RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17311
(310 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 369 bits (950), Expect = e-125
Identities = 68/299 (22%), Positives = 118/299 (39%), Gaps = 44/299 (14%)
Query: 35 YYNYDMYDPENRPIDQ--QQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP-- 90
Y D ++ + + + YD+I+ GGG G VA++L+E +L++E G
Sbjct: 1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60
Query: 91 -DENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYML 149
++ + + P+ + + D Y T P N + GK LGGS+++N
Sbjct: 61 SNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRTNNIKAGKGLGGSTLINGDS 114
Query: 150 YVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYLAK----------------- 191
+ R ++ D WE + G GW +D++ Y KK+E R P A+
Sbjct: 115 WTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGT 174
Query: 192 -----NRSLKLSNGLHD--VEAGQELGYE-NRDINGEKQTGFMVAQGTI-RRGSRCSTAK 242
+ + + + + LG +D G + + R A+
Sbjct: 175 VQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAAR 234
Query: 243 AFLRPVRKRKNLHIAMRAHVTKILVNPAT--KKAYGVQFIRH-GIKQTVLARREELEVI 298
A+L P +R NL I V K+L +A GV F + + V A+ EV+
Sbjct: 235 AWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKH---EVL 290
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 346 bits (890), Expect = e-116
Identities = 82/275 (29%), Positives = 133/275 (48%), Gaps = 39/275 (14%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV--TDVPSLAAWLQL-SKFDW 112
++D++V+G G+AG VVA+RL+E S+L+LEAG + V + P LA L S FDW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 113 QYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGY 171
Y T GYN ++PRG++LGGSS ++YM+ +RG+ D+D + ++ G+ GW +
Sbjct: 62 NYTTTA----QAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 172 DDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHD--------------------VEAGQELG 211
D++ + +K+E P N S + +H + QE
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 212 YE---NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVN 268
E N D+ G + ++ G R S++ A+LRP + R NL + + A VTK++ +
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237
Query: 269 PATKK-----AYGVQFIRHGIKQTVLARREELEVI 298
T TV A++ EV+
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAPTTTVCAKK---EVV 269
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 345 bits (888), Expect = e-116
Identities = 69/282 (24%), Positives = 116/282 (41%), Gaps = 41/282 (14%)
Query: 50 QQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP---DENEVTDVPSLAAWLQ 106
+ R D+I+ GGG G A+RL+E + S+L++E+G D + + + +
Sbjct: 13 KDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIF 72
Query: 107 LSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-G 165
S D Y+T L N G LGGS+++N + R ++ D WE++ G
Sbjct: 73 GSSVDHAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFG 127
Query: 166 NPGWGYDDVLPYFKKSEDNRNPYLA----------------------KNRSLKLSNGLHD 203
N GW +D+V Y ++E R P + + +
Sbjct: 128 NEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVK 187
Query: 204 --VEAGQELGYE-NRDINGEKQTGFMVAQGTIRR-GSRCSTAKAFLRPVRKRKNLHIAMR 259
+ A ++ G +D G + T+ R A+ +L P +R NL +
Sbjct: 188 ALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTG 247
Query: 260 AHVTKILV--NPATKKAYGVQFIRH-GIKQTVLARREELEVI 298
+V K+L+ N T +A GV+F H G V A+ EV+
Sbjct: 248 QYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKH---EVL 286
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 343 bits (882), Expect = e-115
Identities = 75/269 (27%), Positives = 118/269 (43%), Gaps = 37/269 (13%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP---DENEVTDVPSLAAWLQLSKFDW 112
+DF+++GGG+AG VA RL+E + ++L++EAG ++ PS A L+ SK+DW
Sbjct: 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65
Query: 113 QYKTEPTGRACLGYNQGRCSWP--RGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWG 170
YKT + R P RGK LGGSS LNY +V G++ +D WE G W
Sbjct: 66 AYKTTM----VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121
Query: 171 YDDVLPYFKKSEDNRNPYLA-----------------KNRSLKLSNGLHD--VEAGQELG 211
+D ++PY +KS + + + +A + +G
Sbjct: 122 WDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMG 181
Query: 212 YE-NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPA 270
+I + G TI RG R + V+ + N+ I H ++++N A
Sbjct: 182 QPLIENIYDGEMDGLTHCCDTIYRGQRSGSF----LFVKNKPNITIVPEVHSKRLIINEA 237
Query: 271 TKKAYGVQFIRH-GIKQTVLARREELEVI 298
+ GV + G + A R EVI
Sbjct: 238 DRTCKGVTVVTAAGNELNFFADR---EVI 263
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 317 bits (816), Expect = e-106
Identities = 62/273 (22%), Positives = 107/273 (39%), Gaps = 32/273 (11%)
Query: 32 GLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
SY ++ YD + ++ YD++++GGG++G +A+ LSE + +L+LE G
Sbjct: 8 DFSYLSF-AYDATDLELEG-----SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSL 59
Query: 92 ENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYV 151
+V + ++ + + KT ++ RG+VLGG+S++N +Y
Sbjct: 60 PTAYPNVLTADGFVYNLQQEDDGKTPV----ERFVSEDGIDNVRGRVLGGTSIINAGVYA 115
Query: 152 RGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHD--VEAGQE 209
R N Y W D V ++ ED Y K S + +EAG
Sbjct: 116 RANTSIYSAS----GVDWDMDLVNQTYEWVEDTI-VY--KPNSQSWQSVTKTAFLEAGVH 168
Query: 210 LGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILV-N 268
+ + + + G + T A L NL + + A V KI+ N
Sbjct: 169 PNH---GFSLDHEEGTRITGSTFDNKGTRHAADELLNK-GNSNNLRVGVHASVEKIIFSN 224
Query: 269 PATKKAYGVQFIRHGI---KQTVLARREELEVI 298
A GV + + V ++ EVI
Sbjct: 225 APGLTATGVIYRDSNGTPHQAFVRSKG---EVI 254
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 287 bits (737), Expect = 4e-94
Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 33/262 (12%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP-DENEVTDVPSLAAWLQLSKFDWQY 114
D +++GGGSAG+++A+RLSE +LL+EAG + P+ LQ +DW Y
Sbjct: 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDY 76
Query: 115 KTEPT----GRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHW-ESLGNPGW 169
+TE GR W RG+++GGSS L+ M Y+RG+ D+ W ++ G+ W
Sbjct: 77 RTEAQAGTAGR--------AHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRW 128
Query: 170 GYDDVLPYFKKSEDNR---NPY------LAKNRSLKLSNGLHD--VEAGQELGY-ENRDI 217
G+D++LP F+ ED+ + L + + L +EAG LG
Sbjct: 129 GWDELLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGH 188
Query: 218 NGEKQTGFMVAQGTIRRGSRCSTAKAFLRP-VRKRKNLHIAMRAHVTKILVNPATKKAYG 276
N + G IR G R + A A+L VR RKNL I + V ++ + +
Sbjct: 189 NSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRS 246
Query: 277 VQFIRHGIKQTVLARREELEVI 298
++ + V A +++
Sbjct: 247 LEVVGRQGSAEVFAD----QIV 264
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 287 bits (737), Expect = 7e-94
Identities = 73/264 (27%), Positives = 115/264 (43%), Gaps = 29/264 (10%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP-DENEVTDVPS-LAAWLQLSKFDW 112
RE+D+IV+GGGSAGA VA+RLSE S+ L+EAGP D + L S +DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 113 QYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGWGY 171
Y EP R KV+GG S N + R D D WE+ G GW
Sbjct: 72 DYPIEPQE-----NGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 172 DDVLPYFKKSEDNR-----NPYLAKNRSLKLSNG-----LHD--VEAGQELGY-ENRDIN 218
+ P +K+ E N P+ + + L N ++A ++ G +
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNT 186
Query: 219 GEKQT-GFMVAQGTIRR-GSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYG 276
G G Q R G+R S++ +++ P+ +++N + +++ + A ++ G
Sbjct: 187 GTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTG 245
Query: 277 VQFIR--HGIKQTVLARREELEVI 298
V + G + AR EV+
Sbjct: 246 VDIVDSAFGHTHRLTARN---EVV 266
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 248 bits (635), Expect = 1e-78
Identities = 52/263 (19%), Positives = 83/263 (31%), Gaps = 35/263 (13%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP-DENEVTDVPSLAAWLQ--LSKF-- 110
YD+I++G G G + A RLSE +LLLE G + L+KF
Sbjct: 7 PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65
Query: 111 ---DWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNP 167
T+ + + G ++GG + +N LY N D+ +
Sbjct: 66 PGLFESLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SSV 116
Query: 168 GW--GYDDVLPYFKKSEDNR--NPYLAKNRSLKLSNG---LHDVEAGQELGY-ENRDING 219
GW + + PY K + + + L + + GQ D
Sbjct: 117 GWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPN 176
Query: 220 EKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQF 279
K F + G R +L+ R N V+ ++ N + GVQ
Sbjct: 177 YKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQT 234
Query: 280 IR----HGIKQTVLARREELEVI 298
V + VI
Sbjct: 235 NDPTLGPNGFIPVTPKG---RVI 254
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 92.0 bits (228), Expect = 5e-21
Identities = 41/266 (15%), Positives = 68/266 (25%), Gaps = 42/266 (15%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAA------------ 103
+VIG G AV A RL E A L+LE G N+ ++
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63
Query: 104 ----WLQLSKFDWQYKTEPTGRACLGYNQ----GRCSWPRGKVLGGSSVLNYMLYVRGNR 155
L F W G + S G+ +GG S++N + V R
Sbjct: 64 KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123
Query: 156 FDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGL----HDVEAGQELG 211
++ + YF ++ + + + E + G
Sbjct: 124 SYFEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAG 180
Query: 212 YE--------NRDINGEKQTGFMVAQG------TIRRGSRCSTAKAFLRPVRKRKNLHIA 257
+ + G + + S K +L + I
Sbjct: 181 LGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQ 240
Query: 258 MRAHVTKILVNPATKKAYGVQFIRHG 283
V I A V+
Sbjct: 241 TLHQVKTIRQTKDGGYALTVEQKDTD 266
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 78.3 bits (192), Expect = 3e-16
Identities = 45/275 (16%), Positives = 78/275 (28%), Gaps = 43/275 (15%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAA----------WL 105
+VIG G GAV A RL++ A ++E G + + WL
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69
Query: 106 Q---------LSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRF 156
F + +G+ +GG S++N + V R
Sbjct: 70 ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129
Query: 157 DYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAG----QELGY 212
++ + YF ++ + + G Q G+
Sbjct: 130 YFEEI---LPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGF 186
Query: 213 E--------NRDINGEKQTGFMVAQGTIRRGSRC------STAKAFLRPVRKRKNLHIAM 258
+ + ++ G + G S K +L L I
Sbjct: 187 TTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITT 246
Query: 259 RAHVTKILVNPATKKAYGVQFIRHGIKQTVLARRE 293
VTK+ PAT Y V + + V+A +
Sbjct: 247 LHRVTKVA--PATGSGYSVTMEQIDEQGNVVATKV 279
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 72.2 bits (176), Expect = 3e-14
Identities = 31/284 (10%), Positives = 69/284 (24%), Gaps = 55/284 (19%)
Query: 52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFD 111
+ +YD +++G G G A L A + + + + G ++ + ++ K
Sbjct: 42 GMDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNI 100
Query: 112 WQYKTEPTGRACLGYNQGRC---------------------------------SWPRGKV 138
++ G+ +V
Sbjct: 101 DKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRV 160
Query: 139 LGGSSVL-NYMLYVRGNRFDYDHWESLGNPGWG--YDDVLPYFKKSEDNRNPYLAKNRSL 195
+GG S RFD + L + + K+E Y
Sbjct: 161 VGGMSTAWTCATP----RFDREQRPLLVKDDADADDAEWDRLYTKAE----SYFQTGTDQ 212
Query: 196 KLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFL------RPVR 249
+ H+ E + Q + A S+A
Sbjct: 213 FKESIRHN--LVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDA 270
Query: 250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFI--RHGIKQTVLAR 291
+ ++ +++ N + + G + + A
Sbjct: 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKAD 314
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 40.9 bits (95), Expect = 3e-04
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 51 QQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
Q + +D V+G G G +A R++ +L+LE P
Sbjct: 2 QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP 41
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 40.9 bits (96), Expect = 3e-04
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 37 NYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
++ + + + + +D++V+G G G A L + S+L+++AG
Sbjct: 4 SHHHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 7e-04
Identities = 57/376 (15%), Positives = 113/376 (30%), Gaps = 140/376 (37%)
Query: 2 IFALIAFG-------------TILKTGLTIVGTGIWLVPVLIAGLS--------YY--NY 38
+ A+ FG + +T +VG I ++ L +
Sbjct: 156 LVAI--FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 39 DMY----DPENRPIDQQQL-HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG--PD 91
++ +P N P D+ L +IG + ++AH+ + G P
Sbjct: 214 NILEWLENPSNTP-DKDYLLSIPISCPLIG-----------VIQLAHYVVTAKLLGFTPG 261
Query: 92 E---------NEVTDVPSLAAWLQLSKFDWQYKTEPTGRAC-----LGYNQGRC--SWPR 135
E + + A + + W+ +A +G RC ++P
Sbjct: 262 ELRSYLKGATGHSQGLVT-AVAIAETD-SWESFFVSVRKAITVLFFIGV---RCYEAYPN 316
Query: 136 G----KVL-----GGSSVLNYMLYVRG-NRFDYDHWESLGNPGWGYDDVLPYFKKSEDNR 185
+L V + ML + + + V Y K
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQ----------------EQVQDYVNK----T 356
Query: 186 NPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQG----------TIRRG 235
N +L + +++S +NG K +V+ G T+R+
Sbjct: 357 NSHLPAGKQVEISL-----------------VNGAKN--LVVS-GPPQSLYGLNLTLRKA 396
Query: 236 SRCSTAKAFLRPVRKRKNLHIAMR-----A--HVTKILVNPATKKAYGVQFIRHGIKQTV 288
S P +RK L + R + H + +L PA+ + +K V
Sbjct: 397 KAPSGLDQSRIPFSERK-LKFSNRFLPVASPFH-SHLL-VPASDL-----INKDLVKNNV 448
Query: 289 LARREELEVISFRTTT 304
+++++ + T
Sbjct: 449 SFNAKDIQIPVYDTFD 464
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 39.1 bits (90), Expect = 0.001
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
D +VIG G G A RL+++ S +++++
Sbjct: 6 HPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 38.9 bits (89), Expect = 0.002
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVA-HWSILLLEAGPDENEV 95
+D +VIG G GA A L ++A S+LL+E G NE
Sbjct: 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEE 76
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 38.0 bits (89), Expect = 0.003
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
E D++VIG G AGA LS +++LE
Sbjct: 9 EADYLVIGAGIAGASTGYWLSAHG--RVVVLEREAQ 42
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 38.0 bits (89), Expect = 0.003
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
R Y+ +VIGGG G+ +A L++ + + L E+G
Sbjct: 16 RHYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESGT 50
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 37.8 bits (87), Expect = 0.003
Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 44 ENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ ++QQ + +D++++G G AG+V+A RL+ + +L+++ P
Sbjct: 17 QTNTTNEQQESKGFDYLIVGAGFAGSVLAERLAS-SGQRVLIVDRRP 62
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 37.5 bits (88), Expect = 0.004
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
+ + D IVIG G G +A L+ +L+ EA
Sbjct: 1 MSTDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 37.3 bits (87), Expect = 0.005
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+YD I+IG GS GA + A ++L+ +A
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAHM 35
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 37.5 bits (86), Expect = 0.005
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
++IG G G A RL+E+ + + L E
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND 43
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 37.1 bits (87), Expect = 0.006
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 45 NRPIDQQQLHREYDFIVIGGGSAGAVVASR 74
P YD++VIGGGS G + ++R
Sbjct: 9 QGPPPAAGAVASYDYLVIGGGSGG-LASAR 37
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 37.1 bits (86), Expect = 0.006
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
YD IV+GGG +G A L+ A +LLLE
Sbjct: 2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEG 32
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 37.0 bits (86), Expect = 0.006
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
+ D ++G G +G A+ L + A S+ ++EA
Sbjct: 3 TLQRDVAIVGAGPSGLAAATALRK-AGLSVAVIEA 36
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 36.6 bits (84), Expect = 0.008
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
YD+I++G G GAV A+ L + + +L++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKK-LNKKVLVIEKRN 34
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 36.4 bits (85), Expect = 0.008
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
+ + +VIGGG G +A L++ + ++E
Sbjct: 4 EKSEIVVIGGGIVGVTIAHELAK-RGEEVTVIEKR 37
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 36.4 bits (84), Expect = 0.009
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ ++ +IG G AG L + +LE
Sbjct: 3 ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD 40
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 35.8 bits (82), Expect = 0.010
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ E D +V+G GSAG A +S+ + + ++E
Sbjct: 37 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 73
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 35.9 bits (82), Expect = 0.011
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGP 90
D I++G GS+G A +++ + ++E+
Sbjct: 63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 100
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 35.8 bits (82), Expect = 0.013
Identities = 7/36 (19%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ +++G G +GAV+ +L+E + +++
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQRD 36
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 36.1 bits (83), Expect = 0.014
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
+D IVIGGG G+ +AS ++ +LLLE
Sbjct: 5 PEVFDLIVIGGGPGGSTLASFVAM-RGHRVLLLERE 39
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 36.0 bits (83), Expect = 0.015
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
+ + D +V+GGG +G A L + + ++++LEA
Sbjct: 1 MSNKCDVVVVGGGISGMAAAKLLHD-SGLNVVVLEA 35
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 36.0 bits (84), Expect = 0.015
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 54 HREYDFIVIGGGSAGAVVASR 74
+ +D +VIGGGS G + ++
Sbjct: 4 QQSFDLLVIGGGSGG-LACAK 23
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 35.5 bits (82), Expect = 0.016
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
YD +V+GGG G A +++E +L+LE
Sbjct: 3 ESYDVVVVGGGPVGLATAWQVAE-RGHRVLVLERHT 37
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 35.6 bits (83), Expect = 0.017
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 55 REYDFIVIGGGSAGAVVASR 74
R YD +VIG GS G + A
Sbjct: 2 RAYDLVVIGAGSGG-LEAGW 20
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 35.8 bits (81), Expect = 0.017
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 8/119 (6%)
Query: 60 IVIGGGSAGAVVASRLSEV--AHWSILLLEAGPDENEVTD---VPSLAAWLQLSKFDWQY 114
+++GGG+AG + AS L + L+E+G ++ + D +
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDERE 65
Query: 115 KTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDD 173
+W + L V + W ++G+ + +
Sbjct: 66 WLPRC-AGGYKLGIRFENW--SEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSE 121
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 35.6 bits (82), Expect = 0.018
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVP-----SLAAWLQLSKF 110
+YD ++IGGG AG+ A +LS ILL+++ P N + D P S A K
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKP-WNRIGDKPCGDAVSKAH---FDKL 60
Query: 111 DWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHW 161
Y + N + P + + + + L N Y+
Sbjct: 61 GMPYPKGEELENKI--NGIKLYSPDMQTVWTVNGEGFEL----NAPLYNQR 105
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 35.6 bits (83), Expect = 0.018
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
YD++VIGGGS G V ++R
Sbjct: 11 HYDYLVIGGGSGG-VASAR 28
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 35.5 bits (83), Expect = 0.019
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
+YD VIGGGS G V + R
Sbjct: 5 DYDLFVIGGGSGG-VRSGR 22
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 35.6 bits (83), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
++D VIG GS G V A+R
Sbjct: 26 DFDLFVIGSGSGG-VRAAR 43
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 35.2 bits (82), Expect = 0.021
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 55 REYDFIVIGGGSAGAVVASR 74
+ +D I IGGGS G + +
Sbjct: 3 QHFDLIAIGGGSGG-LAVAE 21
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 35.2 bits (82), Expect = 0.025
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 55 REYDFIVIGGGSAGAVVASR 74
+ +D +VIG GS G + A
Sbjct: 6 KAFDLVVIGAGSGG-LEAGW 24
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 35.0 bits (81), Expect = 0.026
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
YD +V+GGG G+ A ++ L++E P+
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPE 38
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 35.0 bits (79), Expect = 0.030
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 23 IWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWS 82
LV + + L + + + I + I+IG G +G A +L
Sbjct: 246 TVLVHRVHSYLERHGLINFG-IYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQS-FGMD 303
Query: 83 ILLLEA 88
+ LLEA
Sbjct: 304 VTLLEA 309
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 34.4 bits (80), Expect = 0.033
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Query: 56 EYDFIVIGGGSAG---AVVASRLSEVAHWSILLLEAG 89
++D I+IGG AG A+ R A +ILL++AG
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGR----ARKNILLVDAG 34
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 34.6 bits (80), Expect = 0.034
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
+YD IVIGGGS G + A +
Sbjct: 107 DYDLIVIGGGSGG-LAAGK 124
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 34.5 bits (80), Expect = 0.035
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 57 YDFIVIGGGSAGAVVASR 74
YD IVIGGGS G + A+R
Sbjct: 3 YDLIVIGGGSGG-MAAAR 19
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 34.5 bits (80), Expect = 0.035
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
+YD I+IGGGS G + A++
Sbjct: 32 DYDLIIIGGGSGG-LAAAK 49
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 34.6 bits (80), Expect = 0.037
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
+D IV+G GS G +L++ LL++A
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAF 35
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 34.4 bits (80), Expect = 0.041
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 47 PIDQQQLHREYDFIVIGGGSAGAVVASR 74
P+ +YD IVIGGGSAG + ++
Sbjct: 3 PVQGSY---DYDLIVIGGGSAG-LACAK 26
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 34.5 bits (78), Expect = 0.041
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 21 TGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAH 80
+ LV + + L + + + I + I+IG G +G A +L
Sbjct: 73 SDTVLVHRVHSYLERHGLINF-GIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQS-FG 130
Query: 81 WSILLLEA 88
+ LLEA
Sbjct: 131 MDVTLLEA 138
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 34.4 bits (78), Expect = 0.045
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
+ I+IG G AG AS L + L+LEA
Sbjct: 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEA 40
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 33.9 bits (78), Expect = 0.056
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 43 PENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLE 87
E + H D +V+G G AG A ++ + ++L+E
Sbjct: 113 SERQAALASAPHDTVDVVVVGSGGAGFSAAISATD-SGAKVILIE 156
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 33.8 bits (77), Expect = 0.079
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 46 RPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
I+ +D IVIGGG G L+ A + LLLEA
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCGLTATRDLTV-AGFKTLLLEA 70
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 33.6 bits (76), Expect = 0.080
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGP 90
H E D +++G GS G A LS + I ++EAG
Sbjct: 77 HAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV 114
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 33.2 bits (77), Expect = 0.083
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 55 REYDFIVIGGGSAGAVVASRLSE 77
+ YD+I IGGGS G +R +
Sbjct: 3 KHYDYIAIGGGSGGIASINRAAM 25
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 33.3 bits (76), Expect = 0.087
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ +++G G+ G A L+ + ++ +L+ P
Sbjct: 5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 33.4 bits (77), Expect = 0.090
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAG 89
+ + YD I++GGG G A L++ + + +LE G
Sbjct: 17 EPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 32.9 bits (76), Expect = 0.094
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 55 REYDFIVIGGGSAG---AVVASRLSEVAHWSILLLEAGPDENEVTD 97
+ D VIG G AG ++V R A I L + + N VT
Sbjct: 5 KYIDCAVIGAGPAGLNASLVLGR----ARKQIALFDNNTNRNRVTQ 46
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 33.3 bits (75), Expect = 0.094
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
YD I++G G +++ LS IL+L+ P
Sbjct: 20 HYDVIILGTGLKECILSGLLSHYGKK-ILVLDRNP 53
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 33.2 bits (76), Expect = 0.099
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ D +VIG G AG V AS +++ + + + ++E
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQK 38
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 33.4 bits (77), Expect = 0.099
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 41 YDPENRPIDQQQLH---REYDFIVIGGGSAGAVVASRLS 76
P+ + REYD I IGGG+AG ++ L
Sbjct: 25 EAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLR 63
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 33.1 bits (74), Expect = 0.11
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
+IG G AG A L+ A + L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTA-AGHQVHLFDKS 34
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 33.0 bits (76), Expect = 0.12
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92
D ++ G G GA++A L ++++E E
Sbjct: 4 DNHIDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARRE 41
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 32.9 bits (75), Expect = 0.13
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
++ + +V+GGG AG A L + A + + +LEA
Sbjct: 7 KVKGSHSVVVLGGGPAGLCSAFELQK-AGYKVTVLEA 42
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 33.0 bits (74), Expect = 0.13
Identities = 20/154 (12%), Positives = 53/154 (34%), Gaps = 8/154 (5%)
Query: 33 LSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92
L NY Y +N+ + Q +++ + + G + ++ I +E
Sbjct: 393 LEIGNYSFYALDNQNLRQLWDWSKHNLTI----TQGKLFFHYNPKLCLSEIHKMEEVSGT 448
Query: 93 NEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVR 152
+ +A + + + +++ W +L +ML+ +
Sbjct: 449 KGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYK 508
Query: 153 ----GNRFDYDHWESLGNPGWGYDDVLPYFKKSE 182
N ++D ++ G+ W D+ P + ++
Sbjct: 509 EAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSND 542
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 33.0 bits (76), Expect = 0.13
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 40 MYDPENRPIDQQQL-HREYDFIVIGGGSAGAVVA----SRLSEVAHWSILLLEAG 89
M+ + R ++ ++ D +VIGGG GA +A R L+E
Sbjct: 1 MFSAKKRDKCIGEMSEKQLDLLVIGGGITGAGIALDAQVR-----GIQTGLVEMN 50
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 32.6 bits (74), Expect = 0.14
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
+IGGG AG+V L + + + E
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERS 55
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 32.5 bits (75), Expect = 0.15
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 57 YDFIVIGGGSAG---AVVASRLSEVAHWSILLLEAGP 90
YD IVIGGG +G A+ A+ ++LLL+ G
Sbjct: 27 YDVIVIGGGPSGLMAAIGAAE----EGANVLLLDKGN 59
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 32.5 bits (75), Expect = 0.16
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEV 78
VIG G A A + E
Sbjct: 4 PVQVAVIGSGGAAMAAALKAVEQ 26
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 32.5 bits (75), Expect = 0.17
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
D +VIG G G +L + + +
Sbjct: 7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 32.3 bits (73), Expect = 0.18
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ V+GGG +G VA L +LLE+
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLRS-RGTDAVLLESSA 49
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 32.5 bits (75), Expect = 0.19
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 50 QQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
++Q E D +V+G G +G RL E S+ ++E D
Sbjct: 10 RRQPPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD 50
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 31.7 bits (72), Expect = 0.19
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 42 DPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
+ ++ I+ +++G G G L L +E +
Sbjct: 29 NQRDQLINPGHAQ----VLILGMGRIGTGAYDELRARYGKISLGIEIREE 74
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 32.2 bits (74), Expect = 0.20
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
D ++IG G+AG +A RL++ +++L GP
Sbjct: 6 EHSCDVLIIGSGAAGLSLALRLAD--QHQVIVLSKGP 40
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 32.2 bits (74), Expect = 0.21
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 48 IDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
+ + D +VIG G G A +++ A +L +EAG D
Sbjct: 1 MSNRAKSPALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 32.0 bits (73), Expect = 0.25
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+V+G GSAG + + A +++L++ P
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKK-AGANVILVDKAP 154
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 32.0 bits (72), Expect = 0.26
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 50 QQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ + VIG G +G A +L ++ + EA
Sbjct: 7 EDKHSSAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEG 46
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 32.0 bits (74), Expect = 0.27
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 51 QQLHREYDFIVIGGGSAG---AVVASRL 75
+ YD IV+G G AG A+ +R
Sbjct: 16 PRGSHMYDVIVVGAGHAGCEAALAVARG 43
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 31.8 bits (73), Expect = 0.30
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
YD +V+G G AG R ++ EA
Sbjct: 20 TSYDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASG 55
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 31.8 bits (71), Expect = 0.34
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 48 IDQQQLHREYDFIVIGGGSAGAVVASRLS 76
+DQ+ + +YD IV+G G +++ LS
Sbjct: 3 MDQETIDTDYDVIVLGTGITECILSGLLS 31
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 31.1 bits (71), Expect = 0.34
Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 55 REYDFIVIGGGSAG---AVVASRL 75
Y +++G G +G A ++
Sbjct: 2 AAYQVLIVGAGFSGAETAFWLAQK 25
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 31.7 bits (73), Expect = 0.37
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
Query: 56 EYDFIVIGGGSAG---AVVASRL 75
E+D +VIGGG AG A+ A+R+
Sbjct: 27 EFDVVVIGGGHAGIEAALAAARM 49
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 31.1 bits (71), Expect = 0.44
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 40 MYDPENRPIDQQQLHRE-YDFIVIGGGSAGAVVA----SRLSEVAHWSILLLEAG 89
M+ + R Q++ +E D ++IGGG GA VA + L+E
Sbjct: 15 MFSNKTRQDSIQKMQQEELDLLIIGGGITGAGVAVQAAAS-----GIKTGLIEMQ 64
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA,
GIDA; tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 31.3 bits (72), Expect = 0.44
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 56 EYDFIVIGGGSAG---AVVASRL 75
+D I+IGGG AG A+ A+R+
Sbjct: 28 PFDVIIIGGGHAGTEAAMAAARM 50
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 31.0 bits (69), Expect = 0.46
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
EYD IV+G G +++ +S V +L ++ P
Sbjct: 6 EYDVIVLGTGLTECILSGIMS-VNGKKVLHMDRNP 39
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 31.0 bits (70), Expect = 0.48
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
IV+G G +G A RLSE +L+LEA
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEA 36
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 30.9 bits (71), Expect = 0.51
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 55 REYDFIVIGGGSAG---AVVASRLSEVAHWSILLLEAGP 90
+ D ++IG G+AG A+ A + +L+++
Sbjct: 26 EKQDVVIIGAGAAGMMCAIEAGKRGR----RVLVIDHAR 60
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 30.9 bits (71), Expect = 0.53
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 57 YDFIVIGGGSAG---AVVASRLSEVAHWSILLLEAGP 90
+ I+IG G+AG A ++L + S+ + + G
Sbjct: 5 SENIIIGAGAAGLFCAAQLAKLGK----SVTVFDNGK 37
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 30.9 bits (70), Expect = 0.54
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 56 EYDFIVIGGGSAG---AVVASRLSEVAHWSILLLE 87
E D ++IGGG +G A A+ +++ + L+E
Sbjct: 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 30.8 bits (70), Expect = 0.57
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 49 DQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ E D +V G G AG + + A +L+LE
Sbjct: 34 TVTEWDYEADVVVAGYGIAGVAASIEAAR-AGADVLVLERTS 74
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 30.9 bits (70), Expect = 0.60
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 60 IVIGGGSAGAVVASRLSE-VAHWSILLLEAGPD 91
+V+GGG+ GA A + + L+E D
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 30.6 bits (70), Expect = 0.65
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 59 FIVIGGGSAGAVVASRLSEVA-HWSILLLEAGPD 91
+++IGG +AG A ++ + +++ LE G
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI 72
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 30.6 bits (70), Expect = 0.66
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 59 FIVIGGGSAGAVVASRLSEVA-HWSILLLEAGPD 91
+V+GG + GA VA+RL ++ I+++E G
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY 72
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 30.5 bits (69), Expect = 0.79
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
D ++IG G AG A + A ++LLE P
Sbjct: 126 TTDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEP 159
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 30.2 bits (68), Expect = 0.80
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
+++G G AG A L+ A + +LEA
Sbjct: 32 NPKHVVIVGAGMAGLSAAYVLAG-AGHQVTVLEA 64
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 30.2 bits (68), Expect = 0.85
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
+ + +IG G+AG +A L + +++LE G
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKG 37
Score = 28.6 bits (64), Expect = 2.7
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 18 IVGTGIWLVPVL--IAGLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRL 75
V TG + P G+ Y + +D + ++VIGG +G A +L
Sbjct: 136 FVATGDYNFPKKPFKYGIHYSEIEDFDN----------FNKGQYVVIGGNESGFDAAYQL 185
Query: 76 SEVAH 80
++
Sbjct: 186 AKNGS 190
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 30.3 bits (69), Expect = 0.86
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 60 IVIGGGSAGAVVASRLSEVA-HWSILLLEAGPD 91
++IGG + GA A+R ++ I++ E G
Sbjct: 5 LIIGGVAGGASAAARARRLSETAEIIMFERGEY 37
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 30.2 bits (69), Expect = 0.90
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 46 RPIDQQQLHREYDFIVIGGGSAG---AVVASR 74
+ ++ R++D +++G G+AG AV A+R
Sbjct: 6 HAVSSEEKERDFDVVIVGAGAAGFSAAVYAAR 37
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur
initiative; 2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 30.2 bits (69), Expect = 0.95
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 60 IVIGGGSAGAVVASRLSEVA-HWSILLLEAGPD 91
+VIG + G A R + + +++
Sbjct: 7 VVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 30.2 bits (68), Expect = 0.95
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 42 DPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAH-----WSILLLEAGPD 91
D ++ ++ E D +++G G AG A+RL ++A + L+E
Sbjct: 21 DKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 75
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 29.4 bits (67), Expect = 1.00
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 57 YDFIVIGGGSAG---AVVASRLSEVAHWSILLLEAG 89
+D IV+GGG +G A+ +R A +L+L+ G
Sbjct: 2 WDVIVVGGGPSGLSAALFLAR----AGLKVLVLDGG 33
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 30.2 bits (69), Expect = 1.0
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 60 IVIGGGSAGAVVASRLSEVA-HWSILLLEAGPD 91
++IGGG+AG ASR+ + W + + EA
Sbjct: 7 VIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW 39
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 29.8 bits (68), Expect = 1.1
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 60 IVIGGGSAGAVVASRLSEVA-HWSILLLEAGPD 91
+V+G + GA AS++ + I++ E D
Sbjct: 5 VVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 29.9 bits (68), Expect = 1.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 55 REYDFIVIGGGSAGAVVASR 74
D +IG G+AG
Sbjct: 7 INVDVAIIGTGTAGMGAYRA 26
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 28.8 bits (65), Expect = 1.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSE 77
+ Y++IVIG +AG + L+
Sbjct: 4 NGRYEYIVIGSEAAGVGLVRELTA 27
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 29.7 bits (67), Expect = 1.2
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 47 PIDQQQLHREYDFIVIGGGSAGAVVASRL 75
+ Q + F++IGGG+A A +
Sbjct: 2 EVPQDKAPSHVPFLLIGGGTAAFAAARSI 30
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 29.8 bits (68), Expect = 1.2
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 5/36 (13%)
Query: 59 FIVIGGGSAGAVVAS---RLSEVAHWSILLLEAGPD 91
++IG AG A + I L++
Sbjct: 5 IVIIGASFAGISAAIASRKKYP--QAEISLIDKQAT 38
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 29.6 bits (67), Expect = 1.3
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 42 DPENRPIDQQQLHREYDFIVIGGGSAG---AVVASRLSEVAHWSILLLEAGP 90
E R + YD +++G G AG AV ++R L+
Sbjct: 198 GAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSAR----KGIRTGLMGERF 245
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 29.7 bits (66), Expect = 1.4
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHW----SILLLEAGPD 91
+D I +G G + +A L E A +L L+ D
Sbjct: 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGD 69
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 29.4 bits (67), Expect = 1.4
Identities = 6/35 (17%), Positives = 9/35 (25%), Gaps = 5/35 (14%)
Query: 60 IVIGGGSAGAVVAS---RLSEVAHWSILLLEAGPD 91
IV+G AG + E +
Sbjct: 4 IVVGCTHAGTFAVKQTIADHP--DADVTAYEMNDN 36
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 29.4 bits (67), Expect = 1.6
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 60 IVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD 91
IV+G G L + I E G
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF 36
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 29.6 bits (66), Expect = 1.6
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 54 HREYDFIVIGGGSAG 68
D +++GGG
Sbjct: 20 EHSVDLLMVGGGMGN 34
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 29.2 bits (65), Expect = 2.0
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 57 YDFIVIGGGSAGAVVASRLS-EVAHWSILLLEAGP 90
+++GGG G A +I LLEAG
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE 39
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 29.0 bits (66), Expect = 2.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 56 EYDFIVIGGGSAGAVVASRLS 76
E D ++IGGG G V A + +
Sbjct: 6 ENDVVIIGGGPGGYVAAIKAA 26
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 29.0 bits (63), Expect = 2.3
Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 18/137 (13%)
Query: 60 IVIGGGSAGAVVASRLSEV--AHWSILLLE------AGPDENEVTDVPS-LAAWLQLSKF 110
+++GGG+AG + AS L + I LL+ G E + ++ + +L + +
Sbjct: 29 LIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPED 88
Query: 111 DWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWG 170
+W + A +W + + G + H L
Sbjct: 89 EWMREC----NASYKVAIKFINWRT-----AGEGTSEARELDGGPDHFYHSFGLLKYHEQ 139
Query: 171 YDDVLPYFKKSEDNRNP 187
+F +S +
Sbjct: 140 IPLSHYWFDRSYRGKTV 156
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 28.6 bits (65), Expect = 2.4
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 55 REYDFIVIGGGSAG---AVVASRLSEVAHWSILLLEAGP 90
++D I++G G A A+ ++R L++ P
Sbjct: 14 EKFDVIIVGLGPAAYGAALYSAR----YMLKTLVIGETP 48
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 28.7 bits (65), Expect = 2.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 56 EYDFIVIGGGSAGAVVA 72
D IVIGGG GA +A
Sbjct: 3 TKDLIVIGGGINGAGIA 19
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 28.9 bits (63), Expect = 2.7
Identities = 20/154 (12%), Positives = 42/154 (27%), Gaps = 12/154 (7%)
Query: 60 IVIGGGSAGAVVASRLSEVAH--WSILLLEAG----PDENEVTDVPSLAAWLQLSKFDWQ 113
+++GGG+AG + AS L +I L+E+ E T + +
Sbjct: 9 VIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKVFFDFLGIPER 68
Query: 114 YKTEPTGRACLGYNQGRCSWPRGKVLGGSSV---LNYMLYVRGNRFDYDHWESLGNPG-- 168
+W + L + +W G
Sbjct: 69 EWMPQVN-GAFKAAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQ 127
Query: 169 WGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLH 202
+ + D + + + ++S+ H
Sbjct: 128 QPMEYACYPQPGALDGKLAPCLSDGTRQMSHAWH 161
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD;
1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 28.2 bits (64), Expect = 2.9
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 57 YDFIVIGGGSAG---AVVASRLSEVAHWSILLLEAGP 90
YD +++G G AG A+ ++R L+
Sbjct: 2 YDVLIVGSGPAGAAAAIYSAR----KGIRTGLMGERF 34
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET:
FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 28.7 bits (65), Expect = 2.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
+++GGG AG A
Sbjct: 2 VTRIVILGGGPAGYEAALV 20
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 28.5 bits (64), Expect = 3.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
D +VIGGG +G L + S ++L+A
Sbjct: 3 SVDVVVIGGGQSGLSAGYFLRR-SGLSYVILDAEAS 37
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 28.3 bits (64), Expect = 3.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
+D ++IGGG AG V A +
Sbjct: 5 SHDVVIIGGGPAGYVAAIK 23
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 28.2 bits (64), Expect = 3.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
YD +V+G G G V A R
Sbjct: 3 HYDVVVLGAGPGGYVAAIR 21
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 28.3 bits (64), Expect = 3.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 56 EYDFIVIGGGSAGAVVASRLS 76
YD IVIG G G V A + +
Sbjct: 25 AYDLIVIGSGPGGYVCAIKAA 45
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A
{Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Length = 286
Score = 28.4 bits (63), Expect = 3.3
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 239 STAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELE 296
+ + K L A+ V + V T A G+K + E L
Sbjct: 218 IQVEFLFEGAKDPKALREALNTRVKALAVGRVTADA----LREWGVKPFYVDETERLG 271
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 28.5 bits (63), Expect = 3.5
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 60 IVIGGGSAGAVVASRLSEV-AHWSILLLEAGP 90
+V+GGG +G + LS ++L+E+
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 28.0 bits (62), Expect = 3.9
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 56 EYDFIVIGGGSAGAVVASRLS-----EVAHWSILLLEAGP 90
+ ++IGGG G A + + + L+EA P
Sbjct: 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 28.2 bits (61), Expect = 4.1
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAG 89
+++G G G++ A+ L + + +
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA 36
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 27.9 bits (63), Expect = 4.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 56 EYDFIVIGGGSAGAVVASRLS 76
+YD +VIG G AG A RL+
Sbjct: 4 KYDVVVIGAGGAGYHGAFRLA 24
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 27.9 bits (63), Expect = 4.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
++D IVIG G G V A +
Sbjct: 3 KFDVIVIGAGPGGYVAAIK 21
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide
dehydrogenase, 2-oxoglutarate dehydrogenase comple
pyruvate dehydrogenase complex; HET: FAD; 1.70A
{Thermus thermophilus} PDB: 2eq7_A*
Length = 455
Score = 27.9 bits (63), Expect = 4.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 57 YDFIVIGGGSAGAVVASRLS 76
YD +VIG G G V A R +
Sbjct: 2 YDLLVIGAGPGGYVAAIRAA 21
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 27.8 bits (63), Expect = 4.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
YD +VIGGG G V + +
Sbjct: 2 PYDVVVIGGGPGGYVASIK 20
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus
thermophilus} PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 27.9 bits (63), Expect = 5.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
YD IVIG G G A R
Sbjct: 6 TYDLIVIGTGPGGYHAAIR 24
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 27.9 bits (63), Expect = 5.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
+ D VIG G G V A +
Sbjct: 6 DADVTVIGSGPGGYVAAIK 24
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} PDB: 1wd7_A 1wcx_A
Length = 261
Score = 27.4 bits (61), Expect = 5.8
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 239 STAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELE 296
+ + K L A+ V + V T A G+K + E L
Sbjct: 193 IQVEFLFEGAKDPKALREALNTRVKALAVGRVTADA----LREWGVKPFYVDETERLG 246
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD;
2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 458
Score = 27.5 bits (62), Expect = 6.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
+ ++IGGG G V A R
Sbjct: 5 QTTLLIIGGGPGGYVAAIR 23
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 27.8 bits (60), Expect = 6.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 60 IVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
I++GGG+AG + A L+ + +L P
Sbjct: 11 IIVGGGTAGWITAGLLAAEHNVDKGVLAHSPK 42
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 27.5 bits (62), Expect = 6.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
E + +V+G G G V A R
Sbjct: 3 ETETLVVGAGPGGYVAAIR 21
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 27.4 bits (61), Expect = 7.0
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 60 IVIGGGSAGAVVASRLSEVA--HWSILLLEAGPD 91
+V+GG A L + + ++
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF 38
>2e2d_C TIMP-2, metalloproteinase inhibitor 2; matrix
metalloproteinase/MMP, collagenase, tissue inhibitor of
metalloproteinases/TIMP, complex, flexibility; 2.00A
{Bos taurus} SCOP: b.40.3.1 PDB: 1bqq_T 1buv_T 1br9_A
1gxd_C 2tmp_A
Length = 180
Score = 26.8 bits (58), Expect = 7.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 122 ACLGYNQGRCSWPRG 136
AC+ + G C+W RG
Sbjct: 166 ACIKRSDGSCAWYRG 180
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 27.2 bits (59), Expect = 7.6
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 60 IVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
+++G G AG V L+ H + +LEA +
Sbjct: 48 LIVGAGIAGLVAGDLLTRAGH-DVTILEANAN 78
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 27.4 bits (61), Expect = 7.8
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 60 IVIGGGSAGAVVASRLSEVAHWS-ILLLEAGP 90
++IG G G +A L W+ I +L+ GP
Sbjct: 8 VIIGAGIVGTNLADELVT-RGWNNITVLDQGP 38
>3fzy_A RTX toxin RTXA; RTXA toxin, CPD, cysteine protease domain,
PRE-cleavage form IDP00167, structural genomics; HET:
IHP; 1.95A {Vibrio cholerae} PDB: 3eeb_A* 3gcd_A*
Length = 234
Score = 27.1 bits (59), Expect = 7.8
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 266 LVNPATKKAYGVQFIR----HGIKQTVLARREELEV 297
LV+ +K +G QFI +G++ V R EL V
Sbjct: 167 LVSDDKQKGFGHQFINAMDANGLRVDVSVRSSELAV 202
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 27.2 bits (61), Expect = 7.8
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 165 GNPGWGYDDVLPY 177
G WGYD V Y
Sbjct: 146 GKRDWGYDGVYLY 158
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 27.3 bits (61), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 55 REYDFIVIGGGSAGAVVASRLSE 77
E+D +V+G G AG A LSE
Sbjct: 17 HEFDAVVVGAGGAGLRAAFGLSE 39
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 27.3 bits (61), Expect = 8.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 55 REYDFIVIGGGSAGAVVASRLSE 77
+ D +VIGGG AG A +
Sbjct: 4 QYCDSLVIGGGLAGLRAAVATQQ 26
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 27.1 bits (61), Expect = 8.9
Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 60 IVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+++G G G +A +LS+ + + +++ P
Sbjct: 12 VIVGNGPGGFELAKQLSQ--TYEVTVIDKEP 40
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 27.1 bits (61), Expect = 8.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
EYD +V+GGG G A
Sbjct: 6 EYDVVVLGGGPGGYSAAFA 24
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 26.1 bits (58), Expect = 9.0
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 58 DFIVIGGGSAGAVVASRLSE 77
F VIG G G + L
Sbjct: 8 QFAVIGLGRFGGSIVKELHR 27
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 26.8 bits (60), Expect = 9.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 55 REYDFIVIGGGSAGAVVASRLSE 77
RE+D +VIG G AG A ++S+
Sbjct: 6 REFDAVVIGAGGAGMRAALQISQ 28
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 26.9 bits (60), Expect = 9.8
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 165 GNPGWGYDDVLPY 177
G GWGYD Y
Sbjct: 171 GQRGWGYDGAAFY 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,003,411
Number of extensions: 304274
Number of successful extensions: 979
Number of sequences better than 10.0: 1
Number of HSP's gapped: 917
Number of HSP's successfully gapped: 176
Length of query: 310
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 217
Effective length of database: 4,105,140
Effective search space: 890815380
Effective search space used: 890815380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)