Query psy17313
Match_columns 197
No_of_seqs 160 out of 1080
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 18:49:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 2.6E-67 8.9E-72 477.9 16.2 182 6-187 210-391 (392)
2 2ohf_A Protein OLA1, GTP-bindi 100.0 5.2E-67 1.8E-71 477.1 16.1 186 6-191 208-393 (396)
3 1jal_A YCHF protein; nucleotid 100.0 1.9E-65 6.6E-70 462.0 14.7 179 5-187 184-363 (363)
4 2dby_A GTP-binding protein; GD 100.0 4.8E-64 1.6E-68 452.5 17.3 180 6-187 187-368 (368)
5 1wxq_A GTP-binding protein; st 100.0 3.1E-36 1.1E-40 272.9 10.3 157 6-186 200-395 (397)
6 4a9a_A Ribosome-interacting GT 100.0 1E-34 3.6E-39 262.6 4.0 154 5-184 209-374 (376)
7 2eki_A DRG 1, developmentally- 99.6 1.5E-15 5.3E-20 113.4 5.2 81 97-189 5-90 (93)
8 3hvz_A Uncharacterized protein 98.4 3.1E-07 1.1E-11 66.1 4.8 60 104-185 8-67 (78)
9 1udx_A The GTP-binding protein 95.3 0.022 7.5E-07 51.6 5.6 42 18-65 267-308 (416)
10 2kmm_A Guanosine-3',5'-BIS(dip 95.2 0.029 9.9E-07 37.9 4.9 55 116-189 12-66 (73)
11 3clv_A RAB5 protein, putative; 93.4 0.25 8.6E-06 37.1 7.1 42 19-65 146-187 (208)
12 4dsu_A GTPase KRAS, isoform 2B 91.0 0.8 2.7E-05 34.1 7.3 44 18-66 107-150 (189)
13 3q72_A GTP-binding protein RAD 90.4 1.4 4.9E-05 32.1 8.1 44 18-65 104-147 (166)
14 2nzj_A GTP-binding protein REM 90.3 0.95 3.2E-05 33.3 7.1 43 19-65 110-152 (175)
15 2a9k_A RAS-related protein RAL 90.3 1.1 3.9E-05 33.1 7.6 43 19-65 122-164 (187)
16 3t1o_A Gliding protein MGLA; G 90.3 0.82 2.8E-05 34.3 6.8 41 19-65 134-175 (198)
17 3q85_A GTP-binding protein REM 90.3 1.4 4.8E-05 32.2 8.0 42 20-65 109-150 (169)
18 1u8z_A RAS-related protein RAL 90.0 1.3 4.5E-05 31.9 7.6 43 19-65 108-150 (168)
19 3bc1_A RAS-related protein RAB 89.5 1.2 4E-05 33.2 7.0 43 19-65 126-168 (195)
20 1c1y_A RAS-related protein RAP 89.3 1.8 6.1E-05 31.4 7.8 44 19-65 107-150 (167)
21 4dhe_A Probable GTP-binding pr 89.3 0.79 2.7E-05 35.6 6.1 47 19-65 143-194 (223)
22 2bov_A RAla, RAS-related prote 89.2 1.4 4.8E-05 33.5 7.4 44 19-66 118-161 (206)
23 3pqc_A Probable GTP-binding pr 89.0 0.83 2.8E-05 34.3 5.9 45 20-65 133-177 (195)
24 1x3s_A RAS-related protein RAB 88.8 1.8 6.1E-05 32.4 7.7 42 19-65 120-161 (195)
25 1z0f_A RAB14, member RAS oncog 88.7 1.3 4.5E-05 32.5 6.8 43 19-65 119-161 (179)
26 2fg5_A RAB-22B, RAS-related pr 88.6 1.3 4.6E-05 33.7 7.0 42 20-65 128-169 (192)
27 1kao_A RAP2A; GTP-binding prot 88.5 1.7 5.9E-05 31.3 7.2 43 19-65 107-149 (167)
28 1g16_A RAS-related protein SEC 88.5 1 3.5E-05 32.8 6.0 42 19-65 107-148 (170)
29 2ce2_X GTPase HRAS; signaling 88.2 1.6 5.5E-05 31.3 6.9 42 19-65 107-148 (166)
30 1wms_A RAB-9, RAB9, RAS-relate 88.2 2.5 8.7E-05 31.0 8.1 43 19-65 115-157 (177)
31 2f7s_A C25KG, RAS-related prot 88.0 1.4 4.9E-05 34.1 6.8 44 19-66 140-183 (217)
32 2efe_B Small GTP-binding prote 88.0 1.3 4.4E-05 32.8 6.3 41 20-64 117-157 (181)
33 1z08_A RAS-related protein RAB 87.9 1.8 6.1E-05 31.6 7.0 43 19-65 110-152 (170)
34 3con_A GTPase NRAS; structural 87.1 1.8 6E-05 32.6 6.7 42 19-65 125-166 (190)
35 2gf9_A RAS-related protein RAB 87.0 1.5 5.2E-05 33.1 6.3 43 19-65 126-168 (189)
36 1r2q_A RAS-related protein RAB 87.0 2.2 7.4E-05 30.9 7.0 43 19-65 110-152 (170)
37 3ihw_A Centg3; RAS, centaurin, 86.8 3.8 0.00013 31.1 8.6 46 19-65 118-163 (184)
38 2y8e_A RAB-protein 6, GH09086P 86.7 2 6.9E-05 31.5 6.8 43 19-65 118-160 (179)
39 2fn4_A P23, RAS-related protei 86.6 2.3 7.8E-05 31.2 7.0 43 19-65 113-155 (181)
40 2oil_A CATX-8, RAS-related pro 86.6 2.2 7.5E-05 32.2 7.1 43 19-65 129-171 (193)
41 3t5g_A GTP-binding protein RHE 86.5 2.4 8.1E-05 31.5 7.1 43 19-65 110-152 (181)
42 3dz8_A RAS-related protein RAB 86.1 1.8 6.1E-05 32.8 6.3 43 19-65 127-169 (191)
43 3tkl_A RAS-related protein RAB 86.0 1.9 6.6E-05 32.4 6.4 42 20-65 121-162 (196)
44 3t5d_A Septin-7; GTP-binding p 86.0 0.13 4.5E-06 42.7 -0.3 55 6-64 132-186 (274)
45 2erx_A GTP-binding protein DI- 85.9 2.6 8.8E-05 30.6 6.9 42 19-64 108-149 (172)
46 3oes_A GTPase rhebl1; small GT 85.8 2.2 7.6E-05 32.7 6.8 43 19-65 128-170 (201)
47 3tw8_B RAS-related protein RAB 85.7 1.9 6.4E-05 31.7 6.1 43 19-65 112-154 (181)
48 3cbq_A GTP-binding protein REM 85.7 3.5 0.00012 31.8 7.9 43 19-65 129-171 (195)
49 1z2a_A RAS-related protein RAB 85.5 1.9 6.4E-05 31.3 6.0 43 19-65 108-150 (168)
50 2iwr_A Centaurin gamma 1; ANK 85.5 2.3 7.7E-05 31.5 6.5 46 19-65 107-152 (178)
51 3kkq_A RAS-related protein M-R 85.3 2.5 8.5E-05 31.4 6.7 42 19-64 122-163 (183)
52 2g6b_A RAS-related protein RAB 84.9 2 6.7E-05 31.8 5.9 43 19-65 115-157 (180)
53 1ky3_A GTP-binding protein YPT 84.8 5.6 0.00019 29.1 8.4 45 19-65 117-161 (182)
54 2atv_A RERG, RAS-like estrogen 84.8 2.9 0.0001 31.7 7.0 44 18-65 130-173 (196)
55 2fu5_C RAS-related protein RAB 84.6 1.8 6.1E-05 32.3 5.6 42 20-65 113-154 (183)
56 2hup_A RAS-related protein RAB 84.4 2.7 9.2E-05 32.4 6.7 43 19-65 133-176 (201)
57 3reg_A RHO-like small GTPase; 84.3 1.9 6.4E-05 32.7 5.7 45 19-65 126-171 (194)
58 2o52_A RAS-related protein RAB 84.1 3.2 0.00011 31.8 7.1 43 19-65 129-171 (200)
59 2gf0_A GTP-binding protein DI- 84.1 2.9 0.0001 31.4 6.7 41 19-64 113-153 (199)
60 2bme_A RAB4A, RAS-related prot 83.7 3.5 0.00012 30.6 6.9 43 19-65 114-156 (186)
61 1z0j_A RAB-22, RAS-related pro 83.7 3.8 0.00013 29.7 6.9 43 19-65 110-152 (170)
62 2hxs_A RAB-26, RAS-related pro 83.4 3.7 0.00013 30.2 6.9 42 20-65 114-156 (178)
63 1f6b_A SAR1; gtpases, N-termin 83.1 5.5 0.00019 30.6 8.0 43 18-64 124-181 (198)
64 2a5j_A RAS-related protein RAB 82.9 3.3 0.00011 31.3 6.5 43 19-65 125-167 (191)
65 1vg8_A RAS-related protein RAB 82.8 3.5 0.00012 31.3 6.7 44 19-66 116-159 (207)
66 1svi_A GTP-binding protein YSX 82.6 2.7 9.2E-05 31.6 5.9 46 19-65 133-178 (195)
67 1zbd_A Rabphilin-3A; G protein 82.2 2.3 7.9E-05 32.4 5.4 44 19-66 112-155 (203)
68 2g3y_A GTP-binding protein GEM 82.0 5.8 0.0002 31.6 8.0 43 19-65 144-186 (211)
69 2bcg_Y Protein YP2, GTP-bindin 81.8 3.4 0.00012 31.6 6.3 43 19-65 112-154 (206)
70 1s0u_A EIF-2-gamma, translatio 81.7 3.1 0.00011 36.6 6.7 54 12-65 127-181 (408)
71 3cph_A RAS-related protein SEC 81.5 2.4 8.2E-05 32.4 5.3 42 20-66 125-166 (213)
72 2il1_A RAB12; G-protein, GDP, 81.1 5 0.00017 30.4 7.0 44 19-65 130-173 (192)
73 3iev_A GTP-binding protein ERA 81.1 6.8 0.00023 33.0 8.5 45 19-65 121-165 (308)
74 3cpj_B GTP-binding protein YPT 81.0 3.5 0.00012 32.2 6.2 43 19-65 117-159 (223)
75 3sjy_A Translation initiation 80.9 2.3 8E-05 37.3 5.6 55 11-65 120-175 (403)
76 2e87_A Hypothetical protein PH 80.8 2.4 8.2E-05 36.5 5.6 41 20-66 280-320 (357)
77 2ew1_A RAS-related protein RAB 80.7 3.7 0.00013 32.0 6.3 42 20-65 131-172 (201)
78 3c5c_A RAS-like protein 12; GD 80.5 4.1 0.00014 30.9 6.3 41 19-63 126-166 (187)
79 2hf9_A Probable hydrogenase ni 80.4 3 0.0001 32.4 5.7 44 20-65 164-207 (226)
80 2wsm_A Hydrogenase expression/ 80.4 3.2 0.00011 32.2 5.8 45 19-65 153-197 (221)
81 4djt_A GTP-binding nuclear pro 80.2 2.8 9.4E-05 32.4 5.3 42 20-65 117-158 (218)
82 1ek0_A Protein (GTP-binding pr 80.1 4.9 0.00017 29.0 6.4 45 19-65 107-152 (170)
83 1wwt_A Threonyl-tRNA synthetas 80.1 1.3 4.6E-05 30.8 3.1 48 118-184 23-71 (88)
84 1m2o_B GTP-binding protein SAR 79.1 7.8 0.00027 29.4 7.5 42 19-64 123-174 (190)
85 4dkx_A RAS-related protein RAB 78.9 4.9 0.00017 32.3 6.6 42 20-65 118-159 (216)
86 1z06_A RAS-related protein RAB 78.5 3.6 0.00012 30.9 5.4 44 18-65 125-168 (189)
87 3iby_A Ferrous iron transport 77.9 2.3 7.9E-05 35.1 4.4 42 20-66 110-151 (256)
88 3ec1_A YQEH GTPase; atnos1, at 77.8 8.7 0.0003 33.5 8.3 111 18-134 96-225 (369)
89 1kk1_A EIF2gamma; initiation o 77.2 3.2 0.00011 36.4 5.4 51 15-65 132-183 (410)
90 2h57_A ADP-ribosylation factor 76.8 12 0.0004 28.0 7.9 43 19-65 125-170 (190)
91 2qu8_A Putative nucleolar GTP- 76.7 5.9 0.0002 31.1 6.4 49 19-67 141-190 (228)
92 1upt_A ARL1, ADP-ribosylation 76.4 5.2 0.00018 29.0 5.6 43 19-65 107-152 (171)
93 3i8s_A Ferrous iron transport 76.3 2.3 7.9E-05 35.3 4.0 42 20-66 112-153 (274)
94 2wji_A Ferrous iron transport 76.0 4.5 0.00015 29.9 5.2 41 20-65 108-148 (165)
95 3h2y_A GTPase family protein; 76.0 7.1 0.00024 34.1 7.2 107 18-134 94-224 (368)
96 1ksh_A ARF-like protein 2; sma 75.8 10 0.00035 28.1 7.2 43 19-65 118-163 (186)
97 2yc2_C IFT27, small RAB-relate 75.3 3.4 0.00012 31.2 4.4 44 19-65 131-174 (208)
98 2p5s_A RAS and EF-hand domain 75.2 7.3 0.00025 29.6 6.4 45 19-65 132-180 (199)
99 3p32_A Probable GTPase RV1496/ 75.1 4.4 0.00015 34.9 5.6 49 19-67 216-269 (355)
100 3bwd_D RAC-like GTP-binding pr 75.1 4.3 0.00015 29.9 4.9 42 20-65 112-164 (182)
101 1zj6_A ADP-ribosylation factor 75.0 14 0.00048 27.5 7.9 44 18-65 115-161 (187)
102 1mh1_A RAC1; GTP-binding, GTPa 74.9 7.2 0.00025 28.7 6.1 44 20-65 109-163 (186)
103 3k53_A Ferrous iron transport 74.8 4.7 0.00016 33.0 5.5 41 21-66 110-150 (271)
104 4bas_A ADP-ribosylation factor 74.7 8.2 0.00028 28.8 6.5 40 20-65 127-172 (199)
105 2cjw_A GTP-binding protein GEM 73.9 15 0.00052 28.0 8.0 44 19-66 113-156 (192)
106 3c5h_A Glucocorticoid receptor 73.4 5.8 0.0002 32.2 5.7 42 19-65 197-238 (255)
107 3a1s_A Iron(II) transport prot 73.3 4.1 0.00014 33.6 4.7 43 20-67 110-152 (258)
108 4gzl_A RAS-related C3 botulinu 72.9 6.8 0.00023 30.1 5.7 45 19-64 133-187 (204)
109 1lnz_A SPO0B-associated GTP-bi 72.7 3.7 0.00012 35.8 4.5 58 18-102 272-329 (342)
110 3b1v_A Ferrous iron uptake tra 72.4 4.3 0.00015 33.9 4.7 41 20-65 107-147 (272)
111 1moz_A ARL1, ADP-ribosylation 72.0 17 0.00057 26.7 7.6 44 18-65 117-163 (183)
112 2h17_A ADP-ribosylation factor 71.0 13 0.00046 27.5 6.9 44 18-65 120-166 (181)
113 2atx_A Small GTP binding prote 70.3 10 0.00036 28.3 6.2 44 20-65 122-176 (194)
114 1r8s_A ADP-ribosylation factor 70.2 7.6 0.00026 28.0 5.2 43 19-65 100-145 (164)
115 3gj0_A GTP-binding nuclear pro 69.6 3 0.0001 32.4 3.0 41 19-65 118-158 (221)
116 2x77_A ADP-ribosylation factor 69.4 6.6 0.00022 29.4 4.8 43 19-65 122-167 (189)
117 2wjg_A FEOB, ferrous iron tran 68.8 7.7 0.00026 28.8 5.0 42 19-65 111-152 (188)
118 2j1l_A RHO-related GTP-binding 68.3 14 0.00047 28.6 6.6 45 19-65 137-192 (214)
119 2gco_A H9, RHO-related GTP-bin 67.7 16 0.00056 27.7 6.9 45 19-65 128-183 (201)
120 2q3h_A RAS homolog gene family 67.4 16 0.00054 27.5 6.7 44 20-65 124-178 (201)
121 2fv8_A H6, RHO-related GTP-bin 66.9 18 0.00062 27.6 7.0 14 19-32 128-141 (207)
122 2j0v_A RAC-like GTP-binding pr 66.7 8 0.00027 29.5 4.9 43 20-65 113-163 (212)
123 1tke_A Threonyl-tRNA synthetas 66.0 2.4 8.3E-05 34.5 1.8 49 117-184 12-60 (224)
124 2lkc_A Translation initiation 65.9 16 0.00056 26.5 6.3 14 19-32 106-119 (178)
125 3q3j_B RHO-related GTP-binding 65.7 15 0.00052 28.4 6.4 45 19-65 130-185 (214)
126 2cxx_A Probable GTP-binding pr 65.6 13 0.00043 27.5 5.7 42 19-65 121-167 (190)
127 2yv5_A YJEQ protein; hydrolase 64.9 1.2 4.3E-05 37.7 -0.2 75 19-103 109-190 (302)
128 1zd9_A ADP-ribosylation factor 64.7 12 0.00043 28.0 5.6 43 19-65 123-168 (188)
129 2dyk_A GTP-binding protein; GT 64.6 6.4 0.00022 28.2 3.7 37 19-64 107-144 (161)
130 2k9x_A Tburm1, uncharacterized 64.6 4 0.00014 30.4 2.6 23 169-191 81-103 (110)
131 1puj_A YLQF, conserved hypothe 64.4 4.2 0.00014 34.2 3.0 49 18-72 48-96 (282)
132 2b6h_A ADP-ribosylation factor 64.0 13 0.00046 28.1 5.7 43 19-65 129-174 (192)
133 2wkq_A NPH1-1, RAS-related C3 63.7 14 0.00048 30.1 6.1 44 20-65 259-313 (332)
134 3l0i_B RAS-related protein RAB 63.3 1.6 5.5E-05 33.4 0.2 41 20-64 138-178 (199)
135 1fzq_A ADP-ribosylation factor 62.8 34 0.0012 25.4 7.8 43 19-65 116-161 (181)
136 1xzp_A Probable tRNA modificat 62.6 19 0.00065 32.8 7.3 44 17-67 347-390 (482)
137 4dcu_A GTP-binding protein ENG 62.5 15 0.00051 32.6 6.4 79 19-100 305-389 (456)
138 3lvq_E ARF-GAP with SH3 domain 59.5 30 0.001 30.6 7.9 58 19-101 422-482 (497)
139 3o47_A ADP-ribosylation factor 59.5 33 0.0011 29.0 7.8 43 19-65 265-310 (329)
140 1u0l_A Probable GTPase ENGC; p 59.3 1.2 4.1E-05 37.7 -1.3 80 19-102 114-194 (301)
141 3u7z_A Putative metal binding 59.2 4.5 0.00015 29.9 2.0 25 164-188 75-100 (101)
142 1ega_A Protein (GTP-binding pr 58.7 16 0.00055 30.6 5.7 44 19-65 115-158 (301)
143 3cnl_A YLQF, putative uncharac 57.0 13 0.00044 30.9 4.7 105 20-136 46-159 (262)
144 2qag_A Septin-2, protein NEDD5 53.9 6.4 0.00022 34.2 2.4 53 9-65 165-217 (361)
145 1m7b_A RND3/RHOE small GTP-bin 52.8 19 0.00066 26.7 4.8 45 19-64 110-164 (184)
146 3gee_A MNME, tRNA modification 52.6 28 0.00096 31.6 6.6 39 20-65 343-381 (476)
147 2qtf_A Protein HFLX, GTP-bindi 52.1 9.5 0.00032 33.3 3.2 70 19-111 291-362 (364)
148 3llu_A RAS-related GTP-binding 51.6 21 0.00071 27.0 4.8 13 19-31 128-140 (196)
149 2p67_A LAO/AO transport system 51.4 20 0.00069 30.5 5.2 50 20-69 194-248 (341)
150 1zun_B Sulfate adenylate trans 50.4 15 0.00053 32.3 4.4 54 17-72 154-214 (434)
151 2zej_A Dardarin, leucine-rich 50.3 18 0.0006 27.1 4.2 14 19-32 111-124 (184)
152 2rcn_A Probable GTPase ENGC; Y 49.0 3.3 0.00011 36.7 -0.3 80 19-102 159-240 (358)
153 2hj1_A Hypothetical protein; s 48.8 19 0.00065 26.1 3.9 51 115-185 28-84 (97)
154 1yrb_A ATP(GTP)binding protein 47.9 23 0.00079 28.0 4.7 14 19-32 170-183 (262)
155 1wb1_A Translation elongation 47.3 18 0.00061 32.7 4.4 46 20-65 125-172 (482)
156 1dm9_A Hypothetical 15.5 KD pr 47.0 14 0.00047 28.0 3.0 27 160-186 30-60 (133)
157 1wgk_A Riken cDNA 2900073H19 p 46.1 13 0.00044 27.6 2.7 22 169-190 87-108 (114)
158 1wf3_A GTP-binding protein; GT 45.2 31 0.0011 29.0 5.3 38 20-64 117-155 (301)
159 2hjg_A GTP-binding protein ENG 45.0 27 0.00091 30.8 5.0 78 19-100 285-369 (436)
160 2gj8_A MNME, tRNA modification 44.7 7.9 0.00027 29.0 1.3 52 20-103 115-166 (172)
161 3dpu_A RAB family protein; roc 44.5 15 0.00051 33.3 3.4 44 20-67 150-193 (535)
162 1v70_A Probable antibiotics sy 44.4 18 0.00061 24.0 3.1 62 107-188 23-84 (105)
163 1t9h_A YLOQ, probable GTPase E 44.3 3 0.0001 36.1 -1.3 48 19-70 116-165 (307)
164 3p26_A Elongation factor 1 alp 44.0 16 0.00055 32.7 3.5 58 15-74 166-230 (483)
165 3j2k_7 ERF3, eukaryotic polype 43.6 20 0.00068 31.9 4.0 63 10-72 145-215 (439)
166 3izy_P Translation initiation 41.9 12 0.00039 34.9 2.2 45 20-65 104-151 (537)
167 3kt9_A Aprataxin; FHA domain, 41.2 13 0.00043 27.4 1.9 45 132-185 47-91 (102)
168 2brf_A Bifunctional polynucleo 40.9 14 0.00048 27.6 2.2 45 132-185 53-97 (110)
169 1gwn_A RHO-related GTP-binding 39.4 39 0.0013 26.0 4.7 45 19-64 131-185 (205)
170 2elf_A Protein translation elo 38.6 40 0.0014 29.3 5.1 44 21-65 112-160 (370)
171 1mky_A Probable GTP-binding pr 38.6 37 0.0013 29.9 4.9 76 19-98 291-373 (439)
172 3r7w_A Gtpase1, GTP-binding pr 37.8 23 0.00078 29.6 3.3 47 19-65 114-165 (307)
173 3r8s_R 50S ribosomal protein L 37.8 17 0.00058 26.8 2.2 19 166-184 5-23 (103)
174 3geh_A MNME, tRNA modification 37.2 25 0.00085 31.8 3.6 40 18-65 328-367 (462)
175 4e2q_A Ureidoglycine aminohydr 36.2 10 0.00035 32.3 0.8 29 162-190 216-244 (266)
176 3h8u_A Uncharacterized conserv 35.3 36 0.0012 23.9 3.6 64 105-188 32-96 (125)
177 1hmj_A RPB5, protein (subunit 35.2 10 0.00035 26.9 0.6 32 72-103 15-49 (78)
178 2opk_A Hypothetical protein; p 35.1 13 0.00043 26.6 1.1 26 163-188 63-90 (112)
179 4i4a_A Similar to unknown prot 34.6 12 0.0004 26.6 0.8 26 163-188 64-89 (128)
180 2arc_A ARAC, arabinose operon 34.6 13 0.00043 27.1 1.0 27 162-188 47-73 (164)
181 3v2d_V 50S ribosomal protein L 34.4 19 0.00063 26.5 1.9 19 166-184 5-23 (101)
182 1jny_A EF-1-alpha, elongation 34.4 31 0.0011 30.4 3.8 55 18-72 142-203 (435)
183 2fh5_B SR-beta, signal recogni 34.3 35 0.0012 25.8 3.6 13 20-32 115-127 (214)
184 2ozj_A Cupin 2, conserved barr 34.0 13 0.00043 26.0 0.9 26 164-189 69-94 (114)
185 2k6p_A Uncharacterized protein 33.8 16 0.00055 25.3 1.4 26 160-185 22-51 (92)
186 3th5_A RAS-related C3 botulinu 39.3 9.1 0.00031 29.1 0.0 13 20-32 134-146 (204)
187 3qq5_A Small GTP-binding prote 32.5 13 0.00043 33.4 0.8 41 20-66 140-180 (423)
188 3d82_A Cupin 2, conserved barr 32.2 17 0.00058 24.3 1.3 24 164-187 61-84 (102)
189 2cu3_A Unknown function protei 31.4 36 0.0012 22.0 2.8 21 169-189 43-63 (64)
190 3mca_A HBS1, elongation factor 31.4 36 0.0012 31.6 3.8 56 17-72 312-373 (592)
191 1sfn_A Conserved hypothetical 31.1 14 0.00048 30.2 0.8 29 162-190 195-223 (246)
192 2qjl_A URM1, ubiquitin-related 30.7 20 0.00069 25.3 1.6 16 169-184 78-93 (99)
193 3izq_1 HBS1P, elongation facto 30.6 46 0.0016 31.1 4.4 62 12-73 297-363 (611)
194 3lxw_A GTPase IMAP family memb 29.4 1.1E+02 0.0038 24.4 6.0 42 20-64 139-185 (247)
195 2g1e_A Hypothetical protein TA 29.4 34 0.0012 23.1 2.5 19 169-187 69-87 (90)
196 2www_A Methylmalonic aciduria 29.1 77 0.0027 27.1 5.3 13 20-32 212-224 (349)
197 1mky_A Probable GTP-binding pr 29.0 55 0.0019 28.7 4.4 41 19-67 109-151 (439)
198 2gu9_A Tetracenomycin polyketi 29.0 16 0.00053 24.9 0.7 25 164-188 55-79 (113)
199 1sq4_A GLXB, glyoxylate-induce 28.9 25 0.00087 29.4 2.1 29 162-190 221-249 (278)
200 3lwc_A Uncharacterized protein 28.7 22 0.00075 25.9 1.5 25 164-188 70-94 (119)
201 2r32_A GCN4-PII/tumor necrosis 28.6 28 0.00095 27.8 2.1 25 168-192 124-148 (166)
202 2hjg_A GTP-binding protein ENG 28.2 36 0.0012 29.9 3.0 15 18-32 109-123 (436)
203 3fjs_A Uncharacterized protein 27.8 17 0.00057 25.9 0.7 62 106-188 30-91 (114)
204 1y9q_A Transcriptional regulat 27.8 26 0.00089 26.8 1.8 26 164-189 137-162 (192)
205 3aqy_A Beta-1,3-glucan-binding 27.8 61 0.0021 23.8 3.8 64 111-187 15-81 (106)
206 1f60_A Elongation factor EEF1A 27.7 43 0.0015 29.8 3.5 54 19-72 144-202 (458)
207 2q30_A Uncharacterized protein 27.5 24 0.00081 23.9 1.4 25 164-188 66-91 (110)
208 4a9a_A Ribosome-interacting GT 27.4 2.2 7.6E-05 38.0 -5.0 36 115-150 302-344 (376)
209 1eik_A RNA polymerase subunit 27.3 11 0.00037 26.7 -0.5 23 72-94 17-40 (77)
210 1wm3_A Ubiquitin-like protein 27.1 20 0.00068 23.8 0.9 14 171-184 58-71 (72)
211 2l52_A Methanosarcina acetivor 27.1 24 0.00081 25.1 1.4 18 169-186 78-95 (99)
212 2io1_B Small ubiquitin-related 27.0 25 0.00087 24.9 1.5 17 171-187 64-80 (94)
213 2kl0_A Putative thiamin biosyn 26.7 34 0.0011 23.2 2.1 20 172-191 47-66 (73)
214 2c78_A Elongation factor TU-A; 26.6 54 0.0018 28.4 3.9 45 20-67 127-179 (405)
215 2qag_C Septin-7; cell cycle, c 26.5 32 0.0011 30.7 2.4 53 8-64 157-209 (418)
216 2b8m_A Hypothetical protein MJ 26.5 28 0.00095 24.3 1.7 25 164-188 58-83 (117)
217 2zjr_O 50S ribosomal protein L 26.5 15 0.00052 26.9 0.2 19 166-184 5-23 (100)
218 2oa2_A BH2720 protein; 1017534 26.4 1E+02 0.0034 22.5 4.9 61 107-187 38-104 (148)
219 1o5u_A Novel thermotoga mariti 26.0 18 0.00062 25.7 0.6 24 165-188 61-85 (101)
220 3a4r_A Nfatc2-interacting prot 25.7 21 0.00072 24.3 0.8 14 171-184 65-78 (79)
221 1yhf_A Hypothetical protein SP 25.7 21 0.00071 24.7 0.8 25 164-188 71-95 (115)
222 3fm3_A Methionine aminopeptida 25.6 29 0.001 30.2 2.0 58 119-187 66-133 (358)
223 3cb4_D GTP-binding protein LEP 25.6 65 0.0022 30.2 4.4 44 19-65 122-165 (599)
224 1sef_A Conserved hypothetical 25.3 20 0.00069 29.6 0.8 27 162-188 212-238 (274)
225 4h7l_A Uncharacterized protein 25.2 25 0.00087 27.7 1.3 26 162-187 77-102 (157)
226 1fm0_D Molybdopterin convertin 24.8 33 0.0011 22.7 1.7 17 169-185 60-76 (81)
227 4db5_A Tumor necrosis factor l 24.2 34 0.0011 26.3 1.8 26 166-191 81-106 (125)
228 2q5w_D Molybdopterin convertin 24.1 52 0.0018 21.5 2.6 19 169-187 56-74 (77)
229 2i45_A Hypothetical protein; n 24.0 25 0.00084 24.2 1.0 24 165-188 60-84 (107)
230 2pmv_A Gastric intrinsic facto 23.8 33 0.0011 31.0 1.9 16 171-186 382-397 (399)
231 3cew_A Uncharacterized cupin p 23.3 21 0.00073 25.3 0.5 57 112-187 26-82 (125)
232 2bps_A YUKD protein; ubiquitin 23.2 27 0.00093 24.6 1.0 13 171-183 68-80 (81)
233 3l2h_A Putative sugar phosphat 23.1 33 0.0011 25.5 1.6 23 164-186 79-101 (162)
234 3kgz_A Cupin 2 conserved barre 22.7 31 0.0011 26.3 1.4 27 162-188 73-99 (156)
235 2f9l_A RAB11B, member RAS onco 22.7 1.3E+02 0.0043 22.4 5.0 42 19-64 109-150 (199)
236 3gkn_A Bacterioferritin comigr 22.5 1.6E+02 0.0056 21.0 5.4 57 19-85 34-91 (163)
237 3fm8_A Kinesin-like protein KI 22.2 64 0.0022 24.0 3.0 18 171-188 101-124 (124)
238 2pfw_A Cupin 2, conserved barr 22.1 29 0.001 23.9 1.0 24 165-188 66-89 (116)
239 3dwg_C 9.5 kDa culture filtrat 21.7 58 0.002 22.3 2.6 20 169-188 72-91 (93)
240 2pyt_A Ethanolamine utilizatio 21.5 41 0.0014 25.0 1.8 24 165-188 87-110 (133)
241 2bb6_A TCII, TC II, transcobal 21.4 39 0.0013 30.7 1.9 16 171-186 397-412 (414)
242 1vjk_A Molybdopterin convertin 21.4 43 0.0015 23.4 1.9 17 169-185 77-93 (98)
243 1ryj_A Unknown; beta/alpha pro 21.3 1.8E+02 0.0061 18.9 7.0 60 109-189 10-69 (70)
244 3jxo_A TRKA-N domain protein; 20.9 95 0.0032 20.5 3.5 23 164-186 50-72 (86)
245 1nrj_B SR-beta, signal recogni 20.8 20 0.0007 27.3 -0.0 14 19-32 119-132 (218)
246 4h87_A Kanadaptin; FHA domain 20.6 49 0.0017 24.6 2.1 14 170-183 106-119 (130)
247 1d2e_A Elongation factor TU (E 20.6 83 0.0028 27.2 3.9 45 20-65 118-168 (397)
248 1f0z_A THis protein; ubiquitin 20.5 40 0.0014 21.8 1.4 54 117-189 10-65 (66)
249 1rc6_A Hypothetical protein YL 20.5 26 0.0009 28.6 0.6 26 163-188 210-235 (261)
250 1oix_A RAS-related protein RAB 20.5 1.6E+02 0.0054 21.9 5.1 40 20-63 134-173 (191)
251 3rpf_C Molybdopterin convertin 20.3 57 0.0019 21.5 2.2 20 169-188 53-72 (74)
No 1
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2.6e-67 Score=477.90 Aligned_cols=182 Identities=51% Similarity=0.897 Sum_probs=171.3
Q ss_pred hHHHHHhhcccccccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHhC
Q psy17313 6 HLRIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK 85 (197)
Q Consensus 6 ~~E~~~i~~~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g 85 (197)
++|+++|+.+.|+|+||++|++|++|.++.+..|++++++++|+++++|+.++||+||++|.+|++|+++|+++||+++|
T Consensus 210 ~~e~e~i~~~~~lt~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g 289 (392)
T 1ni3_A 210 NREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLN 289 (392)
T ss_dssp HHHHHHHHTTCCGGGSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhccCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhC
Confidence 46788999999999999999999999887633589999999999887666889999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhhcCCeEEeecCCCceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCc
Q psy17313 86 ATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGK 165 (197)
Q Consensus 86 ~~sgl~~li~~~y~lL~LitffT~g~~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk 165 (197)
.+|||+++|+++|++||||+|||+||+|+|||||++|+|||||||+|||||+|||||||||+|+||+++||+++||++||
T Consensus 290 ~~~gl~~~i~~~~~~L~l~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~ 369 (392)
T 1ni3_A 290 TKSMLPKIIVTGYNALNLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGK 369 (392)
T ss_dssp CCCSHHHHHHHHHHHTTEEEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHhCCEEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeecCCCEEEEEEcc
Q psy17313 166 YRQQGRAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 166 ~r~eGkdYivqDGDIi~f~fn~ 187 (197)
+|++||||+|||||||+||||+
T Consensus 370 ~r~~gk~y~v~dgdv~~f~f~~ 391 (392)
T 1ni3_A 370 YLTKGKEYVMESGDIAHWKAGK 391 (392)
T ss_dssp SCEEETTCBCCTTCEEECC---
T ss_pred ccccCCceeeeCCCEEEEEccC
Confidence 9999999999999999999997
No 2
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-67 Score=477.09 Aligned_cols=186 Identities=67% Similarity=1.080 Sum_probs=172.4
Q ss_pred hHHHHHhhcccccccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHhC
Q psy17313 6 HLRIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK 85 (197)
Q Consensus 6 ~~E~~~i~~~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g 85 (197)
.+|+++|+.++|||+||++|++|+++.++.++.|++++++++|++.++++.++||+||++|.+|++|+++|+++||+++|
T Consensus 208 ~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g 287 (396)
T 2ohf_A 208 DKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANM 287 (396)
T ss_dssp HHHHHHHHHHCCGGGSCEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhC
Confidence 46788899999999999999999999888755689999999998765446889999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhhcCCeEEeecCCCceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCc
Q psy17313 86 ATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGK 165 (197)
Q Consensus 86 ~~sgl~~li~~~y~lL~LitffT~g~~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk 165 (197)
.+|||++||+++|++||||+|||+||+|+|||||++|+|||||||+|||||+|||||||||+|+||++|||+++||++||
T Consensus 288 ~~~~l~~li~~~~~~L~li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~ 367 (396)
T 2ohf_A 288 TQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGK 367 (396)
T ss_dssp CCCSHHHHHHHHHHHTTEEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHhCCEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCc
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeecCCCEEEEEEccCCCC
Q psy17313 166 YRQQGRAYTVEDGDIIFFKFNAGAGL 191 (197)
Q Consensus 166 ~r~eGkdYivqDGDIi~f~fn~~~~~ 191 (197)
+|++||||+|||||||+|||||+++.
T Consensus 368 ~r~~Gk~y~v~dgDii~f~fn~~~~~ 393 (396)
T 2ohf_A 368 YRQQGRNYIVEDGDIIFFKFNTPQQP 393 (396)
T ss_dssp CEEECTTCBCCTTCEEEEEEC-----
T ss_pred ccccCCCceeeCCCEEEEEecCCccc
Confidence 99999999999999999999998764
No 3
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=1.9e-65 Score=461.99 Aligned_cols=179 Identities=37% Similarity=0.751 Sum_probs=171.5
Q ss_pred ChHHHHHhhcccccccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHh
Q psy17313 5 HHLRIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQ 84 (197)
Q Consensus 5 ~~~E~~~i~~~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~ 84 (197)
.++|.+++++++|+|+||+||++|++|.++. .|++++++++|+.++ +.++||+||++|++|.+|+++++++||+++
T Consensus 184 ~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~--~n~~~~~v~~~~~~~--~~~~i~~sA~~E~el~~l~~~e~~~~l~~~ 259 (363)
T 1jal_A 184 DKEELQAIKSYNFLTLKPTMYIANVNEDGFE--NNPYLDRVREIAAKE--GAVVVPVCAAIESEIAELDDEEKVEFLQDL 259 (363)
T ss_dssp CHHHHHHHGGGCCSTTSCEEEEEECCTTCSS--SCHHHHHHHHHHHHT--TCEEEEECHHHHHHGGGSCSSTTHHHHTTS
T ss_pred CHHHHHHHHHhhcccCCcEEEEEeccccccc--ccHHHHHHHHHHHHc--CCCEEEechHHHHHHHhcCHHHHHHHHHHh
Confidence 3577889999999999999999999998872 578999999999877 578999999999999999999999999999
Q ss_pred C-CcchHHHHHHHHHhhcCCeEEeecCCCceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHc
Q psy17313 85 K-ATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAA 163 (197)
Q Consensus 85 g-~~sgl~~li~~~y~lL~LitffT~g~~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~ 163 (197)
| .+|||+++|+++|++||||+|||+||+|+|||||++|+|||||||+|||||+|||||||||+|+||+++||+++||++
T Consensus 260 g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~ 339 (363)
T 1jal_A 260 GIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEA 339 (363)
T ss_dssp SCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHT
T ss_pred CcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhc
Confidence 9 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceeecCCCEEEEEEcc
Q psy17313 164 GKYRQQGRAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 164 Gk~r~eGkdYivqDGDIi~f~fn~ 187 (197)
||+|+|||||+|||||||+|||||
T Consensus 340 g~~r~egk~y~v~dgDii~f~fn~ 363 (363)
T 1jal_A 340 GKWRLEGKDYIVQDGDVMHFRFNV 363 (363)
T ss_dssp TCCEEECTTCBCCTTCEEEEESCC
T ss_pred CCeeccCCccEecCCCEEEEEecC
Confidence 999999999999999999999997
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=4.8e-64 Score=452.53 Aligned_cols=180 Identities=38% Similarity=0.641 Sum_probs=170.2
Q ss_pred hHHHHHhhcccccccCceEEEEeCCCcccccc-ccccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHh
Q psy17313 6 HLRIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQ 84 (197)
Q Consensus 6 ~~E~~~i~~~~lLT~KP~iyv~Nv~e~d~~~~-~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~ 84 (197)
++|..+++.|+++|+||+||++|++|.++.+. +|.++++++++++++ +.++||+||++|.+|.+|+++++++||+++
T Consensus 187 ~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~--g~~vv~iSAk~E~el~eL~~~~~~~~l~~~ 264 (368)
T 2dby_A 187 EAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEE--GAEVVVVSARLEAELAELSGEEARELLAAY 264 (368)
T ss_dssp HHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHH--TCEEEEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHc--CCeEEEeechhHHHHHHhchHHHHHHHHHh
Confidence 56788899999999999999999999887542 378999999999876 578999999999999999999999999999
Q ss_pred C-CcchHHHHHHHHHhhcCCeEEeecCCCceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHc
Q psy17313 85 K-ATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAA 163 (197)
Q Consensus 85 g-~~sgl~~li~~~y~lL~LitffT~g~~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~ 163 (197)
| .+|||++||+++|++||||+|||+||+|+|||||++|+|||||||+|||||+|||||||||+|+||+++||+++||++
T Consensus 265 g~~~~gl~~li~~~~~~L~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~ 344 (368)
T 2dby_A 265 GLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKER 344 (368)
T ss_dssp TCCSCHHHHHHHHHHHHTTEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHT
T ss_pred CcchhhHHHHHHHHHHHhCCEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhc
Confidence 9 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceeecCCCEEEEEEcc
Q psy17313 164 GKYRQQGRAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 164 Gk~r~eGkdYivqDGDIi~f~fn~ 187 (197)
||+|+|||||+|||||||+|||||
T Consensus 345 g~~r~~gk~y~v~dgdi~~~~f~~ 368 (368)
T 2dby_A 345 GWVRLEGKDYEVQDGDVIYVLFNA 368 (368)
T ss_dssp TCCEEECTTCBCCTTEEEEEEC--
T ss_pred CCccccCCCceecCCCEEEEEecC
Confidence 999999999999999999999997
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=3.1e-36 Score=272.93 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=128.2
Q ss_pred hHHHHHhhcccccccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcC--------------
Q psy17313 6 HLRIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVD-------------- 71 (197)
Q Consensus 6 ~~E~~~i~~~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~-------------- 71 (197)
++|...+..+.++|.||+|||+|++|.. .+++++++.+..... +.++||+||+.|.+|.+
T Consensus 200 ~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~~~~l~~l~~~~~~~--~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~ 273 (397)
T 1wxq_A 200 QDDLLAFASEIRRVNKPMVIAANKADAA----SDEQIKRLVREEEKR--GYIVIPTSAAAELTLRKAAKAGFIEYIPGAS 273 (397)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEECGGGS----CHHHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCSSSCCCCSCC---
T ss_pred HHHHHHHHHhhhccCCCEEEEEeCcccc----chHHHHHHHHHHhhc--CCcEEEEeccchhhHHHHHhhhhhhhcCCCc
Confidence 4566778889999999999999998754 256788887766544 46899999999999876
Q ss_pred -------CCHHHHH-------HHHHHhCCcchHHHHHH-HHHhhcCCeEEeecC----------CCceeeeEecCCCChh
Q psy17313 72 -------MPDDERQ-------RYLDEQKATSVLDKIIT-QGYKSLQLQYFFTAG----------QDEVKAWTIQKGTKAP 126 (197)
Q Consensus 72 -------l~~ee~~-------~fl~~~g~~sgl~~li~-~~y~lL~LitffT~g----------~~EvRAWti~~GstA~ 126 (197)
|++++++ +||+.+| +||++++|+ ++|++|||++|||+| ++|+|+|++++|+||+
T Consensus 274 ~~~~~~~l~~~~~~~~e~ire~~l~~~g-~~g~~~~i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~ 352 (397)
T 1wxq_A 274 EFKVLRDMSEKQKRALMVIKEKVLDRFG-STGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPR 352 (397)
T ss_dssp --------------CTTHHHHHHTSSSS-SCSHHHHHHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHH
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHH
Confidence 4555555 6777888 899999996 669999999999987 3578999999999999
Q ss_pred hhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEEc
Q psy17313 127 QAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 186 (197)
Q Consensus 127 ~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~fn 186 (197)
|+|++|||||++|||+|+ + .+|++| +|++|+|+|||||+|.-.
T Consensus 353 d~a~~iH~d~~~~f~~a~-----~-----------~~~~~~-~g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 353 DLAFKVHTDLGKGFLYAI-----N-----------ARTKRR-VGEDYELQFNDIVKIVSV 395 (397)
T ss_dssp HHHHHHCHHHHHTEEEEE-----E-----------TTTCSB-CCTTCCCCTTEEEEEEEC
T ss_pred HHHHHHhHHHHhhhhhhH-----H-----------hcCCEE-cCCCccccCCCEEEEEeC
Confidence 999999999999999998 2 346676 699999999999999753
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=262.59 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=119.5
Q ss_pred ChHHHHHhhcccccccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHH-----
Q psy17313 5 HHLRIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR----- 79 (197)
Q Consensus 5 ~~~E~~~i~~~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~----- 79 (197)
..+|++.+..+.+||.||++|++|++++++.+ +.+..... ..+++.++++++. ++.++...
T Consensus 209 ~~eeik~il~~~~lt~kpv~~~~nv~eddl~d--------~~~~~~~~--~~p~i~v~nKid~----~~~eele~l~~~~ 274 (376)
T 4a9a_A 209 GNDEIRAVMSEYRINSAEIAFRCDATVDDLID--------VLEASSRR--YMPAIYVLNKIDS----LSIEELELLYRIP 274 (376)
T ss_dssp CHHHHHHHHHHTTCCSEEEEECSCCCHHHHHH--------HHTTTTCE--EECEEEEEECGGG----SCHHHHHHHTTST
T ss_pred cHHHHHHHHHHhcccCCCeeecccCCHHHHHH--------HHHHHHhh--ccceEEEEecccc----cCHHHHHHHhccc
Confidence 35778888899999999999999998876531 22211111 2467888888764 23333222
Q ss_pred -HHHHhC-CcchHHHHHHHHHhhcCCeEEeecCCCceeeeEecCCCChhh-----hhhhhccccccCeeEEEEecchhhh
Q psy17313 80 -YLDEQK-ATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQ-----AAGRIHTDFEKGFIMAEVMHFDDFK 152 (197)
Q Consensus 80 -fl~~~g-~~sgl~~li~~~y~lL~LitffT~g~~EvRAWti~~GstA~~-----aAg~IHsDfekgFI~AeVi~~~D~~ 152 (197)
++...+ .++||++|++++|++||||+|||+||+|+||||++.|++||+ +|+.|||||.+||++|+||+
T Consensus 275 ~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ih~d~~~~F~~a~v~G----- 349 (376)
T 4a9a_A 275 NAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNALVYG----- 349 (376)
T ss_dssp TEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHHHCGGGGGGEEEEEEES-----
T ss_pred chhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHHHHHHHHHhhhHhhhcC-----
Confidence 122223 578999999999999999999999999999999887776665 49999999999999999975
Q ss_pred hcCCHHHHHHcCcccccCCceeecCCCEEEEE
Q psy17313 153 EHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 184 (197)
Q Consensus 153 ~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~ 184 (197)
+ .+|.+| |++||||+|||||||+|.
T Consensus 350 ---s--~~K~~~--r~eGkdyvv~DGDVi~iv 374 (376)
T 4a9a_A 350 ---S--SVKHQP--QYVGLSHILEDEDVVTIL 374 (376)
T ss_dssp ---T--TSSSSS--EEECTTCBCCTTCEEEEE
T ss_pred ---c--ccCCCC--CccCCCcEEcCCCEEEEE
Confidence 3 266766 779999999999999985
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-15 Score=113.43 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=69.5
Q ss_pred HHhhcCCeEEeecCCC----ceeeeEe-cCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCC
Q psy17313 97 GYKSLQLQYFFTAGQD----EVKAWTI-QKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGR 171 (197)
Q Consensus 97 ~y~lL~LitffT~g~~----EvRAWti-~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGk 171 (197)
.|+.|+||.+||..+. -..+.++ ++|+|+.|+|..||+||.+.|.+|.||.-+ ||-.| ++.|.
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~s----------aK~~~--qrVgl 72 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLS----------VKHNP--QKVGK 72 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTT----------SSSSS--EEECS
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEeccc----------ccCCC--EECCC
Confidence 4789999999995543 3468999 999999999999999999999999999853 66666 56999
Q ss_pred ceeecCCCEEEEEEccCC
Q psy17313 172 AYTVEDGDIIFFKFNAGA 189 (197)
Q Consensus 172 dYivqDGDIi~f~fn~~~ 189 (197)
+|+++|||||.|....++
T Consensus 73 dh~L~d~DVV~Iv~~~~~ 90 (93)
T 2eki_A 73 DHTLEDEDVIQIVKKSGP 90 (93)
T ss_dssp SCCCCSSEEECEEECCSC
T ss_pred CcEecCCCEEEEEeCCCC
Confidence 999999999999877544
No 8
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.39 E-value=3.1e-07 Score=66.05 Aligned_cols=60 Identities=27% Similarity=0.330 Sum_probs=49.1
Q ss_pred eEEeecCCCceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEE
Q psy17313 104 QYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 183 (197)
Q Consensus 104 itffT~g~~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f 183 (197)
+.+||-. . ..-.+++|+|+.|+|..||+|+.+.++.|.| .| ++.+.+|.+++||+|.|
T Consensus 8 i~v~tP~-G--~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV-----------------NG--~~v~L~~~L~~gd~VeI 65 (78)
T 3hvz_A 8 VFVFTPK-G--DVISLPIGSTVIDFAYAIHSAVGNRMIGAKV-----------------DG--RIVPIDYKVKTGEIIDV 65 (78)
T ss_dssp EEEECTT-S--CEEEEETTCBHHHHHHHHCHHHHHTEEEEEE-----------------TT--EEECTTCBCCTTCBEEE
T ss_pred EEEECCC-C--CEEEecCCCCHHHHHHHhhhhhhcceEEEEE-----------------CC--EEcCCCcccCCCCEEEE
Confidence 4556522 2 4567999999999999999999999999986 24 45789999999999998
Q ss_pred EE
Q psy17313 184 KF 185 (197)
Q Consensus 184 ~f 185 (197)
.-
T Consensus 66 it 67 (78)
T 3hvz_A 66 LT 67 (78)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 9
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.25 E-value=0.022 Score=51.65 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=28.6
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
|..+|.|+|+|+.|... . ..++.+.+++.+. +.+++++||.-
T Consensus 267 L~~~P~ILVlNKlDl~~---~-~~~~~l~~~l~~~--g~~vi~iSA~~ 308 (416)
T 1udx_A 267 LLRRPSLVALNKVDLLE---E-EAVKALADALARE--GLAVLPVSALT 308 (416)
T ss_dssp HHHSCEEEEEECCTTSC---H-HHHHHHHHHHHTT--TSCEEECCTTT
T ss_pred hhcCCEEEEEECCChhh---H-HHHHHHHHHHHhc--CCeEEEEECCC
Confidence 46799999999976421 1 3455566665544 56799999864
No 10
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=95.24 E-value=0.029 Score=37.87 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=44.7
Q ss_pred eeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEEccCC
Q psy17313 116 AWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGA 189 (197)
Q Consensus 116 AWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~fn~~~ 189 (197)
...++.|+|+.++|..||+++.+..+-|+| .| ++...++.+++||.|.|.-....
T Consensus 12 ~~~~~~g~T~~dla~~i~~~l~~~~vaa~v-----------------Ng--~lvdl~~~L~~~~~Veivt~~~~ 66 (73)
T 2kmm_A 12 IKRLPQGATALDFAYSLHSDLGDHCIGAKV-----------------NH--KLVPLSYVLNSGDQVEVLSSKSL 66 (73)
T ss_dssp EEEECTTCBHHHHHHHHCSHHHHTEEEEEE-----------------TT--EECCTTCBCCSSSBEEEEECCCC
T ss_pred EEEcCCCCcHHHHHHHHhhccccceEEEEE-----------------CC--EEeCCCcCcCCCCEEEEEECCCC
Confidence 467899999999999999999988887763 23 34678999999999988765543
No 11
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.38 E-value=0.25 Score=37.06 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=30.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.+ ......+.+++++.+. +.+++++||+-
T Consensus 146 ~~~piilv~NK~D~~---~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 187 (208)
T 3clv_A 146 SNYIIILVANKIDKN---KFQVDILEVQKYAQDN--NLLFIQTSAKT 187 (208)
T ss_dssp SCCEEEEEEECTTCC----CCSCHHHHHHHHHHT--TCEEEEECTTT
T ss_pred CCCcEEEEEECCCcc---cccCCHHHHHHHHHHc--CCcEEEEecCC
Confidence 348999999998721 1234567788888776 57899999874
No 12
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.01 E-value=0.8 Score=34.14 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=30.2
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
....|+++|+|+.|..- .....+.+..++... +.+++++||.-.
T Consensus 107 ~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~--~~~~~~~Sa~~g 150 (189)
T 4dsu_A 107 SEDVPMVLVGNKCDLPS---RTVDTKQAQDLARSY--GIPFIETSAKTR 150 (189)
T ss_dssp CSCCCEEEEEECTTSSS---CSSCHHHHHHHHHHH--TCCEEECCTTTC
T ss_pred CCCCcEEEEEECccCcc---cccCHHHHHHHHHHc--CCeEEEEeCCCC
Confidence 35689999999976431 233445666666665 578999998743
No 13
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.44 E-value=1.4 Score=32.09 Aligned_cols=44 Identities=11% Similarity=-0.040 Sum_probs=27.9
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...+|+++|+|+.|..- ......+..+.++... +.+++++||+-
T Consensus 104 ~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 147 (166)
T 3q72_A 104 TDDVPIILVGNKSDLVR--SREVSVDEGRACAVVF--DCKFIETSAAL 147 (166)
T ss_dssp --CCCEEEEEECTTCCS--SCCSCHHHHHHHHHHT--TCEEEECBGGG
T ss_pred CCCCCEEEEEecccccc--ccccCHHHHHHHHHHh--CCcEEEeccCC
Confidence 35689999999976421 1122344455666655 57899999874
No 14
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.33 E-value=0.95 Score=33.29 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=27.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- ...-..+..+.++... +.+++++||+-
T Consensus 110 ~~~piilv~NK~Dl~~--~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 152 (175)
T 2nzj_A 110 DHVPIILVGNKADLAR--CREVSVEEGRACAVVF--DCKFIETSATL 152 (175)
T ss_dssp --CCEEEEEECTTCTT--TCCSCHHHHHHHHHHH--TSEEEECBTTT
T ss_pred CCCCEEEEEEChhhcc--ccccCHHHHHHHHHHc--CCeEEEEecCC
Confidence 4689999999976421 1122344556666555 57899999864
No 15
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.33 E-value=1.1 Score=33.13 Aligned_cols=43 Identities=12% Similarity=0.005 Sum_probs=29.7
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|. ........+.++++++.. +.+++++||.-
T Consensus 122 ~~~piilv~nK~Dl--~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 164 (187)
T 2a9k_A 122 ENVPFLLVGNKSDL--EDKRQVSVEEAKNRAEQW--NVNYVETSAKT 164 (187)
T ss_dssp TTCCEEEEEECGGG--GGGCCSCHHHHHHHHHHT--TCEEEECCTTT
T ss_pred CCCCEEEEEECccc--cccCccCHHHHHHHHHHc--CCeEEEeCCCC
Confidence 36899999999764 211233456677777666 57899999874
No 16
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.31 E-value=0.82 Score=34.26 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=30.5
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCC-eEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGA-TIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~-~vv~~sa~~ 65 (197)
...|+++|+|+.|.. .....+.+++++++. +. +++++||+-
T Consensus 134 ~~~piilv~NK~Dl~----~~~~~~~~~~~~~~~--~~~~~~~~Sa~~ 175 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLP----DALPVEMVRAVVDPE--GKFPVLEAVATE 175 (198)
T ss_dssp TSSCEEEEEECTTST----TCCCHHHHHHHHCTT--CCSCEEECBGGG
T ss_pred CCCCEEEEEEchhcc----cccCHHHHHHHHHhc--CCceEEEEecCC
Confidence 678999999997642 134556777888766 56 899999875
No 17
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.27 E-value=1.4 Score=32.24 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=29.2
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
.+|+++|+|+.|.. .......+...+++... +.+++++||+-
T Consensus 109 ~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 150 (169)
T 3q85_A 109 DLPVILVGNKSDLA--RSREVSLEEGRHLAGTL--SCKHIETSAAL 150 (169)
T ss_dssp CCCEEEEEECTTCG--GGCCSCHHHHHHHHHHT--TCEEEECBTTT
T ss_pred CCCEEEEeeCcchh--hcccCCHHHHHHHHHHc--CCcEEEecCcc
Confidence 68999999997642 11233455666777666 57899999864
No 18
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.05 E-value=1.3 Score=31.95 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=29.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. .......+.+++++... +.+++++||.-
T Consensus 108 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 150 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLE--DKRQVSVEEAKNRADQW--NVNYVETSAKT 150 (168)
T ss_dssp TTSCEEEEEECGGGG--GGCCSCHHHHHHHHHHH--TCEEEECCTTT
T ss_pred CCCcEEEEEECcccc--ccCccCHHHHHHHHHHc--CCeEEEeCCCC
Confidence 468999999997642 11223455667777665 56889999864
No 19
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.46 E-value=1.2 Score=33.22 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=29.2
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- ......+.+++++... +.+++++||.-
T Consensus 126 ~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 168 (195)
T 3bc1_A 126 ENPDIVLCGNKSDLED--QRAVKEEEARELAEKY--GIPYFETSAAN 168 (195)
T ss_dssp SSCCEEEEEECTTCGG--GCCSCHHHHHHHHHHH--TCCEEECCTTT
T ss_pred CCCCEEEEEECccccc--ccccCHHHHHHHHHHc--CCCEEEEECCC
Confidence 5789999999976421 1122345667777665 56889999864
No 20
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.32 E-value=1.8 Score=31.39 Aligned_cols=44 Identities=7% Similarity=-0.094 Sum_probs=29.1
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. .......+.+++++.... +.+++++||+-
T Consensus 107 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 150 (167)
T 1c1y_A 107 EDVPMILVGNKCDLE--DERVVGKEQGQNLARQWC-NCAFLESSAKS 150 (167)
T ss_dssp SCCCEEEEEECTTCG--GGCCSCHHHHHHHHHHTT-SCEEEECBTTT
T ss_pred CCCcEEEEEECcccc--ccccCCHHHHHHHHHHcc-CCcEEEecCCC
Confidence 478999999997642 111223456667766542 57899999863
No 21
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.25 E-value=0.79 Score=35.63 Aligned_cols=47 Identities=21% Similarity=0.079 Sum_probs=26.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhc-----CCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN-----DPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~-----~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..-........+.+.+.+... ..+.+++++||+-
T Consensus 143 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~ 194 (223)
T 4dhe_A 143 TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALK 194 (223)
T ss_dssp GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTT
T ss_pred cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCC
Confidence 5689999999975321100111334444433331 1256899999863
No 22
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.22 E-value=1.4 Score=33.47 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=30.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
..+|+++|+|+.|..- ......+.+.+++... +.+++++||.-.
T Consensus 118 ~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g 161 (206)
T 2bov_A 118 ENVPFLLVGNKSDLED--KRQVSVEEAKNRAEQW--NVNYVETSAKTR 161 (206)
T ss_dssp SCCCEEEEEECTTCGG--GCCSCHHHHHHHHHHH--TCEEEEECTTTC
T ss_pred CCCCEEEEEeccCccc--cccccHHHHHHHHHHh--CCeEEEEeCCCC
Confidence 4789999999976421 1223456677777665 578999998753
No 23
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.04 E-value=0.83 Score=34.25 Aligned_cols=45 Identities=20% Similarity=0.133 Sum_probs=27.3
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
.+|+++|+|+.|..-........+.+++++...+ +.+++++||+-
T Consensus 133 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 177 (195)
T 3pqc_A 133 NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG-EYTIIPTSSVT 177 (195)
T ss_dssp TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC-CSCEEECCTTT
T ss_pred CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC-CCceEEEecCC
Confidence 5899999999753211101224455566665532 46799999863
No 24
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.81 E-value=1.8 Score=32.44 Aligned_cols=42 Identities=10% Similarity=-0.022 Sum_probs=29.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- .....+...+++... +.+++++||+-
T Consensus 120 ~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 161 (195)
T 1x3s_A 120 NDIVNMLVGNKIDKEN---REVDRNEGLKFARKH--SMLFIEASAKT 161 (195)
T ss_dssp SCCEEEEEEECTTSSS---CCSCHHHHHHHHHHT--TCEEEECCTTT
T ss_pred CCCcEEEEEECCcCcc---cccCHHHHHHHHHHc--CCEEEEecCCC
Confidence 5689999999986521 122345566777665 57899999864
No 25
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.68 E-value=1.3 Score=32.54 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=29.5
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. .......+.+++++... +.+++++||+-
T Consensus 119 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 161 (179)
T 1z0f_A 119 PNTVIILIGNKADLE--AQRDVTYEEAKQFAEEN--GLLFLEASAKT 161 (179)
T ss_dssp TTCEEEEEEECTTCG--GGCCSCHHHHHHHHHHT--TCEEEECCTTT
T ss_pred CCCcEEEEEECcccc--cccccCHHHHHHHHHHc--CCEEEEEeCCC
Confidence 468999999997642 11223456677777766 57899999863
No 26
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.60 E-value=1.3 Score=33.68 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=28.8
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..|+++|+|+.|.. .......+.+++++++. +.+++++||+-
T Consensus 128 ~~piiiv~NK~Dl~--~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 169 (192)
T 2fg5_A 128 NIVMAIAGNKCDLS--DIREVPLKDAKEYAESI--GAIVVETSAKN 169 (192)
T ss_dssp TCEEEEEEECGGGG--GGCCSCHHHHHHHHHTT--TCEEEECBTTT
T ss_pred CCcEEEEEECcccc--cccccCHHHHHHHHHHc--CCEEEEEeCCC
Confidence 68999999997642 11222456677777665 57889999763
No 27
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.48 E-value=1.7 Score=31.30 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=27.9
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. .......+..++++.+. +.+++++||.-
T Consensus 107 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 149 (167)
T 1kao_A 107 EKVPVILVGNKVDLE--SEREVSSSEGRALAEEW--GCPFMETSAKS 149 (167)
T ss_dssp SCCCEEEEEECGGGG--GGCCSCHHHHHHHHHHH--TSCEEEECTTC
T ss_pred CCCCEEEEEECCccc--ccccCCHHHHHHHHHHh--CCCEEEecCCC
Confidence 468999999997632 11122344556666655 56789999863
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.45 E-value=1 Score=32.82 Aligned_cols=42 Identities=12% Similarity=-0.027 Sum_probs=28.1
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- .....+..++++++. +.+++++||.-
T Consensus 107 ~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 148 (170)
T 1g16_A 107 DEAQLLLVGNKSDMET---RVVTADQGEALAKEL--GIPFIESSAKN 148 (170)
T ss_dssp TTCEEEEEEECTTCTT---CCSCHHHHHHHHHHH--TCCEEECBTTT
T ss_pred CCCcEEEEEECccCCc---CccCHHHHHHHHHHc--CCeEEEEECCC
Confidence 3689999999976421 223445566666665 56789999863
No 29
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.25 E-value=1.6 Score=31.32 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=28.3
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- .....+.+++++++. +.+++++||.-
T Consensus 107 ~~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 148 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAA---RTVESRQAQDLARSY--GIPYIETSAKT 148 (166)
T ss_dssp SCCCEEEEEECTTCSC---CCSCHHHHHHHHHHH--TCCEEEECTTT
T ss_pred CCCcEEEEEEchhhhh---cccCHHHHHHHHHHc--CCeEEEecCCC
Confidence 3689999999976421 123345566666665 56799999864
No 30
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.20 E-value=2.5 Score=31.04 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=29.3
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. . .....+.+++++.... +.+++++||.-
T Consensus 115 ~~~p~i~v~nK~Dl~--~-~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 157 (177)
T 1wms_A 115 ESFPFVILGNKIDIS--E-RQVSTEEAQAWCRDNG-DYPYFETSAKD 157 (177)
T ss_dssp TTSCEEEEEECTTCS--S-CSSCHHHHHHHHHHTT-CCCEEECCTTT
T ss_pred CCCcEEEEEECCccc--c-cccCHHHHHHHHHhcC-CceEEEEeCCC
Confidence 567999999998643 1 2334566777776332 56799999864
No 31
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.98 E-value=1.4 Score=34.06 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=30.3
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
..+|+++|+|+.|.. .......+.+++++... +.+++++||+-.
T Consensus 140 ~~~piilV~NK~Dl~--~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g 183 (217)
T 2f7s_A 140 ENPDIVLIGNKADLP--DQREVNERQARELADKY--GIPYFETSAATG 183 (217)
T ss_dssp TCCEEEEEEECTTCG--GGCCSCHHHHHHHHHHT--TCCEEEEBTTTT
T ss_pred CCCCEEEEEECCccc--cccccCHHHHHHHHHHC--CCcEEEEECCCC
Confidence 578999999997642 11122345677777665 578999998753
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.95 E-value=1.3 Score=32.82 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=27.9
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
..|+++|+|+.|.. .......+.+++++... +.+++++||+
T Consensus 117 ~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 157 (181)
T 2efe_B 117 NMVMALAGNKSDLL--DARKVTAEDAQTYAQEN--GLFFMETSAK 157 (181)
T ss_dssp TCEEEEEEECTTCT--TTCCSCHHHHHHHHHHT--TCEEEECCSS
T ss_pred CCcEEEEEECCccc--ccccCCHHHHHHHHHHc--CCEEEEEECC
Confidence 67899999997642 11122456677777665 5788999975
No 33
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.93 E-value=1.8 Score=31.60 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=28.4
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|.. .......+.+++++... +.+++++||.-
T Consensus 110 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 152 (170)
T 1z08_A 110 NEICLCIVGNKIDLE--KERHVSIQEAESYAESV--GAKHYHTSAKQ 152 (170)
T ss_dssp GGSEEEEEEECGGGG--GGCCSCHHHHHHHHHHT--TCEEEEEBTTT
T ss_pred CCCeEEEEEECcccc--cccccCHHHHHHHHHHc--CCeEEEecCCC
Confidence 468999999997542 11122455667777665 57888999763
No 34
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.06 E-value=1.8 Score=32.60 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=28.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- .....+.+++++++. +.+++++||.-
T Consensus 125 ~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 166 (190)
T 3con_A 125 DDVPMVLVGNKCDLPT---RTVDTKQAHELAKSY--GIPFIETSAKT 166 (190)
T ss_dssp SCCCEEEEEECTTCSC---CCSCHHHHHHHHHHH--TCCEEECCTTT
T ss_pred CCCeEEEEEECCcCCc---ccCCHHHHHHHHHHc--CCeEEEEeCCC
Confidence 3689999999976421 122445666777665 56789999864
No 35
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.03 E-value=1.5 Score=33.13 Aligned_cols=43 Identities=12% Similarity=-0.024 Sum_probs=28.9
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. .......+.++++++.. +.+++++||+-
T Consensus 126 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 168 (189)
T 2gf9_A 126 DNAQVILVGNKCDLE--DERVVPAEDGRRLADDL--GFEFFEASAKE 168 (189)
T ss_dssp TTCEEEEEEECTTCG--GGCCSCHHHHHHHHHHH--TCEEEECBTTT
T ss_pred CCCCEEEEEECcccc--cccCCCHHHHHHHHHHc--CCeEEEEECCC
Confidence 368999999997642 11122345666777665 57899999864
No 36
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.00 E-value=2.2 Score=30.95 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=27.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|.. .......+.+++++... +.+++++||+-
T Consensus 110 ~~~~iilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 152 (170)
T 1r2q_A 110 PNIVIALSGNKADLA--NKRAVDFQEAQSYADDN--SLLFMETSAKT 152 (170)
T ss_dssp TTCEEEEEEECGGGG--GGCCSCHHHHHHHHHHT--TCEEEECCTTT
T ss_pred CCCcEEEEEECccCc--cccccCHHHHHHHHHHc--CCeEEEEeCCC
Confidence 357888889987642 11122345666676655 56788888763
No 37
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.78 E-value=3.8 Score=31.13 Aligned_cols=46 Identities=4% Similarity=-0.052 Sum_probs=29.9
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..-.....-..+.+++++.+.+ ..+++.+||+-
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~ 163 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK-RCTYYETCATY 163 (184)
T ss_dssp GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT-TCEEEEEBTTT
T ss_pred CCCCEEEEEECcccccccccccCHHHHHHHHHHcC-CCeEEEecCCC
Confidence 57899999999764211111224456677777652 36889999864
No 38
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=86.72 E-value=2 Score=31.48 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=26.5
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|.. .......+..+.++... +.+++++||.-
T Consensus 118 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 160 (179)
T 2y8e_A 118 SDVIIMLVGNKTDLS--DKRQVSTEEGERKAKEL--NVMFIETSAKA 160 (179)
T ss_dssp TSSEEEEEEECGGGG--GGCCSCHHHHHHHHHHH--TCEEEEEBTTT
T ss_pred CCCcEEEEEECCccc--ccCcCCHHHHHHHHHHc--CCeEEEEeCCC
Confidence 357899999986532 11122344555666555 56788889763
No 39
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.63 E-value=2.3 Score=31.24 Aligned_cols=43 Identities=5% Similarity=-0.007 Sum_probs=28.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. ....-..+..+.++... +.+++++||+-
T Consensus 113 ~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 155 (181)
T 2fn4_A 113 DDFPVVLVGNKADLE--SQRQVPRSEASAFGASH--HVAYFEASAKL 155 (181)
T ss_dssp SCCCEEEEEECGGGG--GGCCSCHHHHHHHHHHT--TCEEEECBTTT
T ss_pred CCCCEEEEEECcccc--cccccCHHHHHHHHHHc--CCeEEEecCCC
Confidence 467999999997642 11122334556666655 57899999864
No 40
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.59 E-value=2.2 Score=32.24 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=29.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|. ........+.++.++... +.+++++||.-
T Consensus 129 ~~~piilv~nK~Dl--~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 171 (193)
T 2oil_A 129 ATIVVMLVGNKSDL--SQAREVPTEEARMFAENN--GLLFLETSALD 171 (193)
T ss_dssp TTCEEEEEEECGGG--GGGCCSCHHHHHHHHHHT--TCEEEEECTTT
T ss_pred CCCeEEEEEECCCc--ccccccCHHHHHHHHHHc--CCEEEEEeCCC
Confidence 46899999999764 211122455667777665 57899999863
No 41
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=86.51 E-value=2.4 Score=31.51 Aligned_cols=43 Identities=9% Similarity=-0.053 Sum_probs=28.8
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- ......+.+++++... +.+++++||+-
T Consensus 110 ~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 152 (181)
T 3t5g_A 110 VQIPIMLVGNKKDLHM--ERVISYEEGKALAESW--NAAFLESSAKE 152 (181)
T ss_dssp --CCEEEEEECTTCTT--TCCSCHHHHHHHHHHT--TCEEEECCTTS
T ss_pred CCCCEEEEEECccchh--cceecHHHHHHHHHHh--CCcEEEEecCC
Confidence 4689999999976421 1223456677777766 67899999863
No 42
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.09 E-value=1.8 Score=32.84 Aligned_cols=43 Identities=12% Similarity=-0.041 Sum_probs=28.5
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|.. .......+..+.++... +.+++++||+-
T Consensus 127 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 169 (191)
T 3dz8_A 127 DNAQVILVGNKCDME--EERVVPTEKGQLLAEQL--GFDFFEASAKE 169 (191)
T ss_dssp TTCEEEEEEECTTCG--GGCCSCHHHHHHHHHHH--TCEEEECBTTT
T ss_pred CCCCEEEEEECCCCc--cccccCHHHHHHHHHHc--CCeEEEEECCC
Confidence 468999999997642 11223445566666665 57889999864
No 43
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.04 E-value=1.9 Score=32.37 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=28.4
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
.+|+++|+|+.|.. ..........++++... +.+++++||.-
T Consensus 121 ~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 162 (196)
T 3tkl_A 121 NVNKLLVGNKCDLT--TKKVVDYTTAKEFADSL--GIPFLETSAKN 162 (196)
T ss_dssp TCEEEEEEECTTCT--TTCCSCHHHHHHHHHHT--TCCEEEECTTT
T ss_pred CCCEEEEEECcccc--cccccCHHHHHHHHHHc--CCcEEEEeCCC
Confidence 68999999997642 11222345566677665 57899999874
No 44
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=86.01 E-value=0.13 Score=42.72 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=29.5
Q ss_pred hHHHHHhhcccccccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 6 HLRIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 6 ~~E~~~i~~~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
+.+..+++.+.- .+|+|+|+|+.|.--...-....+++.+.+..+ +.+++++||.
T Consensus 132 ~~d~~~l~~l~~--~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~--~i~v~~~sa~ 186 (274)
T 3t5d_A 132 PLDIEFMKRLHE--KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH--KIKIYEFPET 186 (274)
T ss_dssp HHHHHHHHHHTT--TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHT--TCCCCCC---
T ss_pred HHHHHHHHHHhc--cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHc--CCeEEcCCCC
Confidence 344555665543 799999999976421100112334555555554 5667788865
No 45
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.88 E-value=2.6 Score=30.58 Aligned_cols=42 Identities=5% Similarity=-0.015 Sum_probs=25.2
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
..+|+++|+|+.|.. ............++... +.+++++||.
T Consensus 108 ~~~pii~v~nK~Dl~--~~~~v~~~~~~~~~~~~--~~~~~~~Sa~ 149 (172)
T 2erx_A 108 ESIPIMLVGNKCDES--PSREVQSSEAEALARTW--KCAFMETSAK 149 (172)
T ss_dssp -CCCEEEEEECGGGG--GGCCSCHHHHHHHHHHH--TCEEEECBTT
T ss_pred CCCCEEEEEEccccc--cccccCHHHHHHHHHHh--CCeEEEecCC
Confidence 468999999997532 11122233445555554 5678889976
No 46
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=85.83 E-value=2.2 Score=32.68 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=28.2
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- .........+.++... +.+++++||+-
T Consensus 128 ~~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 170 (201)
T 3oes_A 128 TRVPVVLVGNKADLSP--EREVQAVEGKKLAESW--GATFMESSARE 170 (201)
T ss_dssp -CCCEEEEEECTTCGG--GCCSCHHHHHHHHHHH--TCEEEECCTTC
T ss_pred CCCCEEEEEECccCcc--ccccCHHHHHHHHHHh--CCeEEEEeCCC
Confidence 4679999999976421 1222344556666665 57899999874
No 47
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.68 E-value=1.9 Score=31.72 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=27.7
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|.. ............++... +.+++++||.-
T Consensus 112 ~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 154 (181)
T 3tw8_B 112 DDVCRILVGNKNDDP--ERKVVETEDAYKFAGQM--GIQLFETSAKE 154 (181)
T ss_dssp TTSEEEEEEECTTCG--GGCCSCHHHHHHHHHHH--TCCEEECBTTT
T ss_pred CCCCEEEEEECCCCc--hhcccCHHHHHHHHHHc--CCeEEEEECCC
Confidence 358999999997632 11122334555666655 56889999874
No 48
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.67 E-value=3.5 Score=31.78 Aligned_cols=43 Identities=14% Similarity=0.051 Sum_probs=28.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+|+|+|+.|.. ....-..+..++++... +.+++++||+-
T Consensus 129 ~~~piilv~nK~Dl~--~~~~v~~~~~~~~a~~~--~~~~~e~Sa~~ 171 (195)
T 3cbq_A 129 HDLPVILVGNKSDLA--RSREVSLEEGRHLAGTL--SCKHIETSAAL 171 (195)
T ss_dssp SCCCEEEEEECTTCT--TTCCSCHHHHHHHHHHT--TCEEEEEBTTT
T ss_pred CCCCEEEEeechhcc--ccCCcCHHHHHHHHHHh--CCEEEEEcCCC
Confidence 468999999997642 11122345666777665 56889999874
No 49
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.50 E-value=1.9 Score=31.31 Aligned_cols=43 Identities=5% Similarity=-0.269 Sum_probs=28.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|.. .......+.+++++... +.+++++||.-
T Consensus 108 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 150 (168)
T 1z2a_A 108 GDIPTALVQNKIDLL--DDSCIKNEEAEGLAKRL--KLRFYRTSVKE 150 (168)
T ss_dssp CSCCEEEEEECGGGG--GGCSSCHHHHHHHHHHH--TCEEEECBTTT
T ss_pred CCCCEEEEEECcccC--cccccCHHHHHHHHHHc--CCeEEEEecCC
Confidence 468999999997632 11122345666777665 57899999864
No 50
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=85.47 E-value=2.3 Score=31.54 Aligned_cols=46 Identities=0% Similarity=-0.122 Sum_probs=28.8
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..-.....-..+.+++++.... +.+++.+||+-
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~ 152 (178)
T 2iwr_A 107 GGLALALVGTQDRISASSPRVVGDARARALXADMK-RCSYYETXATY 152 (178)
T ss_dssp CCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS-SEEEEEEBTTT
T ss_pred CCCCEEEEEECccccccccCcCCHHHHHHHHHhhc-CCeEEEEeccc
Confidence 46799999999764211111224456667766542 46789999864
No 51
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.33 E-value=2.5 Score=31.44 Aligned_cols=42 Identities=14% Similarity=-0.065 Sum_probs=28.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
...|+++|+|+.|..- ......+.+++++... +.+++++||+
T Consensus 122 ~~~p~ilv~nK~Dl~~--~~~v~~~~~~~~~~~~--~~~~~~~Sa~ 163 (183)
T 3kkq_A 122 ESFPMILVANKVDLMH--LRKVTRDQGKEMATKY--NIPYIETSAK 163 (183)
T ss_dssp SCCCEEEEEECTTCST--TCCSCHHHHHHHHHHH--TCCEEEEBCS
T ss_pred CCCcEEEEEECCCchh--ccCcCHHHHHHHHHHh--CCeEEEeccC
Confidence 5679999999976421 1223445666777666 5779999986
No 52
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.94 E-value=2 Score=31.76 Aligned_cols=43 Identities=9% Similarity=-0.046 Sum_probs=27.5
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- ......+..+++++.. +.+++++||.-
T Consensus 115 ~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 157 (180)
T 2g6b_A 115 HDVALMLLGNKVDSAH--ERVVKREDGEKLAKEY--GLPFMETSAKT 157 (180)
T ss_dssp TTCEEEEEEECCSTTS--CCCSCHHHHHHHHHHH--TCCEEECCTTT
T ss_pred CCCcEEEEEECcccCc--ccccCHHHHHHHHHHc--CCeEEEEeCCC
Confidence 4689999999976421 1122344556666655 56788999763
No 53
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=84.84 E-value=5.6 Score=29.09 Aligned_cols=45 Identities=13% Similarity=-0.075 Sum_probs=28.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..-. ......+.+++++.... +.+++++||.-
T Consensus 117 ~~~p~ilv~nK~Dl~~~-~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~ 161 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEES-KKIVSEKSAQELAKSLG-DIPLFLTSAKN 161 (182)
T ss_dssp TTCCEEEEEECTTSCGG-GCCSCHHHHHHHHHHTT-SCCEEEEBTTT
T ss_pred CCCcEEEEEECCccccc-cccCCHHHHHHHHHhcC-CCeEEEEecCC
Confidence 56799999999874211 01123556667765332 56799999864
No 54
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.77 E-value=2.9 Score=31.74 Aligned_cols=44 Identities=11% Similarity=-0.032 Sum_probs=28.6
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
....|+++|+|+.|..- ......+..++++.+. +.+++++||.-
T Consensus 130 ~~~~piilv~NK~Dl~~--~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 173 (196)
T 2atv_A 130 PKNVTLILVGNKADLDH--SRQVSTEEGEKLATEL--ACAFYECSACT 173 (196)
T ss_dssp TSCCCEEEEEECGGGGG--GCCSCHHHHHHHHHHH--TSEEEECCTTT
T ss_pred CCCCcEEEEEECccccc--ccccCHHHHHHHHHHh--CCeEEEECCCc
Confidence 35689999999976421 1122345566666655 57889999864
No 55
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=84.62 E-value=1.8 Score=32.28 Aligned_cols=42 Identities=12% Similarity=0.001 Sum_probs=25.8
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..|+++|+|+.|..- ......+.+++++... +.+++++||+-
T Consensus 113 ~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 154 (183)
T 2fu5_C 113 DVEKMILGNKCDVND--KRQVSKERGEKLALDY--GIKFMETSAKA 154 (183)
T ss_dssp TCEEEEEEEC--CCS--CCCSCHHHHHHHHHHH--TCEEEECCC--
T ss_pred CCCEEEEEECccCCc--cCcCCHHHHHHHHHHc--CCeEEEEeCCC
Confidence 579999999976421 1122345667777665 57889999863
No 56
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=84.39 E-value=2.7 Score=32.44 Aligned_cols=43 Identities=14% Similarity=0.018 Sum_probs=29.3
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCC-eEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGA-TIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~-~vv~~sa~~ 65 (197)
...|+++|+|+.|..- ......+.+++++... +. +++++||+-
T Consensus 133 ~~~piilv~NK~Dl~~--~~~v~~~~~~~~~~~~--~~~~~~~~SA~~ 176 (201)
T 2hup_A 133 SNIVQLLIGNKSDLSE--LREVSLAEAQSLAEHY--DILCAIETSAKD 176 (201)
T ss_dssp TTCEEEEEEECTTCGG--GCCSCHHHHHHHHHHT--TCSEEEECBTTT
T ss_pred CCCCEEEEEECCcccc--ccccCHHHHHHHHHHc--CCCEEEEEeCCC
Confidence 4589999999976421 1123456677777765 56 889999864
No 57
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.29 E-value=1.9 Score=32.74 Aligned_cols=45 Identities=9% Similarity=-0.076 Sum_probs=27.7
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCe-EEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGAT-IIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~-vv~~sa~~ 65 (197)
...|+++|+|+.|..-........+.+.+++... +.+ ++++||+-
T Consensus 126 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~ 171 (194)
T 3reg_A 126 DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL--GCVAYIEASSVA 171 (194)
T ss_dssp TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH--TCSCEEECBTTT
T ss_pred CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc--CCCEEEEeecCC
Confidence 4589999999976321100123445666777665 445 88899763
No 58
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=84.09 E-value=3.2 Score=31.85 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=28.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|.. ........+..+++... +.+++++||+-
T Consensus 129 ~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~--~~~~~~~SA~~ 171 (200)
T 2o52_A 129 PNIVVILCGNKKDLD--PEREVTFLEASRFAQEN--ELMFLETSALT 171 (200)
T ss_dssp TTCEEEEEEECGGGG--GGCCSCHHHHHHHHHHT--TCEEEEECTTT
T ss_pred CCCcEEEEEECCCcc--cccccCHHHHHHHHHHc--CCEEEEEeCCC
Confidence 368999999997642 11122345566777665 57899999864
No 59
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.06 E-value=2.9 Score=31.41 Aligned_cols=41 Identities=5% Similarity=-0.069 Sum_probs=26.9
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
...|+++|+|+.|..- .....+....++... +.+++++||.
T Consensus 113 ~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~--~~~~~~~Sa~ 153 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQ---REVDTREAQAVAQEW--KCAFMETSAK 153 (199)
T ss_dssp GGSCEEEEEECTTCSS---CSSCHHHHHHHHHHH--TCEEEECBTT
T ss_pred CCCCEEEEEECccCCc---cccCHHHHHHHHHHh--CCeEEEEecC
Confidence 4679999999976421 122344555666555 5678999976
No 60
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=83.74 E-value=3.5 Score=30.64 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=28.4
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|.. ........+.++++... +.+++++||.-
T Consensus 114 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 156 (186)
T 2bme_A 114 QNIVIILCGNKKDLD--ADREVTFLEASRFAQEN--ELMFLETSALT 156 (186)
T ss_dssp TTCEEEEEEECGGGG--GGCCSCHHHHHHHHHHT--TCEEEECCTTT
T ss_pred CCCcEEEEEECcccc--cccccCHHHHHHHHHHc--CCEEEEecCCC
Confidence 467999999997642 11122345666777665 57889999864
No 61
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=83.66 E-value=3.8 Score=29.69 Aligned_cols=43 Identities=12% Similarity=-0.027 Sum_probs=26.8
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..- ......+..+.++... +.+++++||+-
T Consensus 110 ~~~~iilv~nK~Dl~~--~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 152 (170)
T 1z0j_A 110 PSIVVAIAGNKCDLTD--VREVMERDAKDYADSI--HAIFVETSAKN 152 (170)
T ss_dssp TTSEEEEEEECTTCGG--GCCSCHHHHHHHHHHT--TCEEEECBTTT
T ss_pred CCCcEEEEEECCcccc--ccccCHHHHHHHHHHc--CCEEEEEeCCC
Confidence 4568899999976421 1122344556666655 57888889763
No 62
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=83.44 E-value=3.7 Score=30.16 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=25.6
Q ss_pred cCc-eEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKT-QIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP-~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
.+| +++|+|+.|.. .......+.+++++... +.+++++||.-
T Consensus 114 ~~~~iilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 156 (178)
T 2hxs_A 114 TQPLVALVGNKIDLE--HMRTIKPEKHLRFCQEN--GFSSHFVSAKT 156 (178)
T ss_dssp CCCEEEEEEECGGGG--GGCSSCHHHHHHHHHHH--TCEEEEECTTT
T ss_pred CCCeEEEEEEccccc--cccccCHHHHHHHHHHc--CCcEEEEeCCC
Confidence 456 78899997542 11122344566666655 56788888763
No 63
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=83.09 E-value=5.5 Score=30.59 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=26.6
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhhc---------------CCCCeEEEechh
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN---------------DPGATIIPFSGV 64 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~---------------~~~~~vv~~sa~ 64 (197)
...+|+++|+|+.|.. . ....+++++++... ..+.+++++||+
T Consensus 124 ~~~~piilv~NK~Dl~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 181 (198)
T 1f6b_A 124 IANVPILILGNKIDRP--E--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 181 (198)
T ss_dssp GTTSCEEEEEECTTST--T--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred cCCCcEEEEEECCCcc--c--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECC
Confidence 3578999999997642 1 22345666655421 013568888886
No 64
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=82.87 E-value=3.3 Score=31.32 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=28.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..- ...-..+.+++++.+. +.+++++||+-
T Consensus 125 ~~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 167 (191)
T 2a5j_A 125 SNMVIMLIGNKSDLES--RRDVKREEGEAFAREH--GLIFMETSAKT 167 (191)
T ss_dssp TTCEEEEEEECTTCGG--GCCSCHHHHHHHHHHH--TCEEEEECTTT
T ss_pred CCCCEEEEEECcccCC--ccccCHHHHHHHHHHc--CCEEEEEeCCC
Confidence 3689999999976421 1122345666777665 57889999864
No 65
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=82.78 E-value=3.5 Score=31.27 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=29.5
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
..+|+++|+|+.|.. . .....+.+.+++.... +.+++++||+-.
T Consensus 116 ~~~piilv~nK~Dl~--~-~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g 159 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLE--N-RQVATKRAQAWCYSKN-NIPYFETSAKEA 159 (207)
T ss_dssp GGSCEEEEEECTTSS--C-CCSCHHHHHHHHHHTT-SCCEEECBTTTT
T ss_pred CCCcEEEEEECCCCc--c-cccCHHHHHHHHHhcC-CceEEEEeCCCC
Confidence 468999999997643 1 2334556667765322 578999998743
No 66
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.63 E-value=2.7 Score=31.59 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=25.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..-...-....+.+++..... .+.+++++||+-
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~ 178 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-PEDELILFSSET 178 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC-TTSEEEECCTTT
T ss_pred cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc-CCCceEEEEccC
Confidence 4589999999975421100011223444423222 256889999863
No 67
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=82.17 E-value=2.3 Score=32.39 Aligned_cols=44 Identities=9% Similarity=0.004 Sum_probs=29.2
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
..+|+++|+|+.|.. .......+.+++++... +.+++++||+-.
T Consensus 112 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~ 155 (203)
T 1zbd_A 112 DNAQVLLVGNKCDME--DERVVSSERGRQLADHL--GFEFFEASAKDN 155 (203)
T ss_dssp SSCEEEEEEECTTCT--TSCCSCHHHHHHHHHHH--TCEEEECBTTTT
T ss_pred CCCCEEEEEECcccC--cccccCHHHHHHHHHHC--CCeEEEEECCCC
Confidence 468999999997642 11122345666677665 578999998743
No 68
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=82.03 E-value=5.8 Score=31.60 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=26.4
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+|+|+|+.|.. ....-..+..+.++... +.+++.+||+-
T Consensus 144 ~~~piilVgNK~DL~--~~r~v~~~e~~~~a~~~--~~~~~e~SAk~ 186 (211)
T 2g3y_A 144 EDIPIILVGNKSDLV--RCREVSVSEGRACAVVF--DCKFIETSAAV 186 (211)
T ss_dssp TTSCEEEEEECTTCG--GGCCSCHHHHHHHHHHH--TCEEEECBTTT
T ss_pred CCCcEEEEEEChHHh--cCceEeHHHHHHHHHHc--CCEEEEEeCCC
Confidence 368999999997642 11112233444555554 46788899864
No 69
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=81.80 E-value=3.4 Score=31.59 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=28.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..- ......+..+.++... +.+++++||.-
T Consensus 112 ~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 154 (206)
T 2bcg_Y 112 STVLKLLVGNKCDLKD--KRVVEYDVAKEFADAN--KMPFLETSALD 154 (206)
T ss_dssp TTCEEEEEEECTTCTT--TCCSCHHHHHHHHHHT--TCCEEECCTTT
T ss_pred CCCCEEEEEECCCCcc--ccccCHHHHHHHHHHc--CCeEEEEeCCC
Confidence 3589999999976421 1122345666777665 57899999864
No 70
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=81.72 E-value=3.1 Score=36.56 Aligned_cols=54 Identities=28% Similarity=0.258 Sum_probs=29.9
Q ss_pred hhcccccccCceEEEEeCCCccccccccccHHHHHHHHhhcC-CCCeEEEechhh
Q psy17313 12 LNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-PGATIIPFSGVF 65 (197)
Q Consensus 12 i~~~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~-~~~~vv~~sa~~ 65 (197)
+..+..+-.+|+|+|+|+.|..-........+++++++++.. .+.+++++||.-
T Consensus 127 l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~ 181 (408)
T 1s0u_A 127 LMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHH 181 (408)
T ss_dssp HHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC----
T ss_pred HHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCC
Confidence 333344455899999999764211101235567777776421 256899999863
No 71
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.54 E-value=2.4 Score=32.37 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=28.3
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
.+|+++|+|+.|..- .....+..++++... +.+++++||.-.
T Consensus 125 ~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~--~~~~~~~Sa~~~ 166 (213)
T 3cph_A 125 EAQLLLVGNKSDMET---RVVTADQGEALAKEL--GIPFIESSAKND 166 (213)
T ss_dssp CSEEEEEEECTTCSS---CCSCHHHHHHHHHHH--TCCEEECBTTTT
T ss_pred CCCEEEEEECCCCcc---cccCHHHHHHHHHHc--CCEEEEEeCCCC
Confidence 589999999987521 222345556666655 567999998753
No 72
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=81.07 E-value=5 Score=30.44 Aligned_cols=44 Identities=7% Similarity=-0.039 Sum_probs=28.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. .......+.++++++... +.+++++||+-
T Consensus 130 ~~~piilV~NK~Dl~--~~~~v~~~~~~~~~~~~~-~~~~~~~SA~~ 173 (192)
T 2il1_A 130 EDAELLLVGNKLDCE--TDREITRQQGEKFAQQIT-GMRFCEASAKD 173 (192)
T ss_dssp TTCEEEEEEECGGGG--GGCCSCHHHHHHHHHTST-TCEEEECBTTT
T ss_pred CCCcEEEEEECcccc--cccccCHHHHHHHHHhcC-CCeEEEEeCCC
Confidence 368999999997642 111223455666765532 56889999863
No 73
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=81.05 E-value=6.8 Score=33.01 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=27.3
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. .......+.+..+.+..++..+++++||.-
T Consensus 121 ~~~pvilV~NK~Dl~--~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 121 LNKPVIVVINKIDKI--GPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp GCCCEEEEEECGGGS--SSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred cCCCEEEEEECccCC--CCHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 458999999997542 112333444445544432236799999864
No 74
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=81.01 E-value=3.5 Score=32.24 Aligned_cols=43 Identities=12% Similarity=-0.058 Sum_probs=26.5
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. ....-..+.+.+++... +.+++++||+-
T Consensus 117 ~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 159 (223)
T 3cpj_B 117 DNVAVGLIGNKSDLA--HLRAVPTEESKTFAQEN--QLLFTETSALN 159 (223)
T ss_dssp --CEEEEEECCGGGG--GGCCSCHHHHHHHHHHT--TCEEEECCCC-
T ss_pred CCCeEEEEEECcccc--cccccCHHHHHHHHHHc--CCEEEEEeCCC
Confidence 368999999997542 11122345666777665 57888899763
No 75
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=80.86 E-value=2.3 Score=37.27 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=30.9
Q ss_pred HhhcccccccCceEEEEeCCCccccccccccHHHHHHHHhhcC-CCCeEEEechhh
Q psy17313 11 HLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-PGATIIPFSGVF 65 (197)
Q Consensus 11 ~i~~~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~-~~~~vv~~sa~~ 65 (197)
.+.-+..+-.+|+|+|+|+.|..-........+++++++.... .+.+++++||.-
T Consensus 120 ~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~ 175 (403)
T 3sjy_A 120 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALH 175 (403)
T ss_dssp HHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTT
T ss_pred HHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCC
Confidence 3333444455899999999764211001123445555554322 246799999864
No 76
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=80.83 E-value=2.4 Score=36.51 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=26.1
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
.+|+|+|+|+.|..- ...++.+.+++... +.+++++||.-.
T Consensus 280 ~~piilV~NK~Dl~~----~~~~~~~~~~~~~~--~~~~~~iSA~~g 320 (357)
T 2e87_A 280 DLPFLVVINKIDVAD----EENIKRLEKFVKEK--GLNPIKISALKG 320 (357)
T ss_dssp TSCEEEEECCTTTCC----HHHHHHHHHHHHHT--TCCCEECBTTTT
T ss_pred CCCEEEEEECcccCC----hHHHHHHHHHHHhc--CCCeEEEeCCCC
Confidence 789999999876421 11234455555544 467888998653
No 77
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.74 E-value=3.7 Score=31.99 Aligned_cols=42 Identities=10% Similarity=0.049 Sum_probs=25.7
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..|+++|+|+.|.. ....-..+.+++++... +.+++++||+-
T Consensus 131 ~~piilv~NK~Dl~--~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 172 (201)
T 2ew1_A 131 KVITVLVGNKIDLA--ERREVSQQRAEEFSEAQ--DMYYLETSAKE 172 (201)
T ss_dssp TCEEEEEEECGGGG--GGCSSCHHHHHHHHHHH--TCCEEECCTTT
T ss_pred CCCEEEEEECCCCc--cccccCHHHHHHHHHHc--CCEEEEEeCCC
Confidence 57889999986532 11122344555666554 46788888764
No 78
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=80.53 E-value=4.1 Score=30.90 Aligned_cols=41 Identities=10% Similarity=-0.026 Sum_probs=27.4
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEech
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSG 63 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa 63 (197)
...|+++|+|+.|.. ....-..+..++++.+. +.+++.+||
T Consensus 126 ~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~--~~~~~e~Sa 166 (187)
T 3c5c_A 126 RSIPALLLGNKLDMA--QYRQVTKAEGVALAGRF--GCLFFEVSA 166 (187)
T ss_dssp CCCCEEEEEECGGGG--GGCSSCHHHHHHHHHHH--TCEEEECCS
T ss_pred CCCCEEEEEECcchh--hcCccCHHHHHHHHHHc--CCcEEEEee
Confidence 468999999997542 11122345666777666 578888998
No 79
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=80.43 E-value=3 Score=32.42 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=28.4
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
.+|.++|+|+.|.. .......+.+.+++.+.+++.+++++||+-
T Consensus 164 ~~~~iiv~NK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 207 (226)
T 2hf9_A 164 KTADLIVINKIDLA--DAVGADIKKMENDAKRINPDAEVVLLSLKT 207 (226)
T ss_dssp TTCSEEEEECGGGH--HHHTCCHHHHHHHHHHHCTTSEEEECCTTT
T ss_pred hcCCEEEEeccccC--chhHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 47889999997642 111124566666666543457899999863
No 80
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=80.42 E-value=3.2 Score=32.18 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=28.8
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|.++|+|+.|.. .......+++.+++.+.+++.+++++||.-
T Consensus 153 ~~~~~iiv~NK~Dl~--~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 197 (221)
T 2wsm_A 153 FRVADLIVINKVALA--EAVGADVEKMKADAKLINPRAKIIEMDLKT 197 (221)
T ss_dssp HHTCSEEEEECGGGH--HHHTCCHHHHHHHHHHHCTTSEEEECBTTT
T ss_pred hhcCCEEEEecccCC--cchhhHHHHHHHHHHHhCCCCeEEEeecCC
Confidence 358999999997642 111124556666665443457899999863
No 81
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=80.20 E-value=2.8 Score=32.39 Aligned_cols=42 Identities=7% Similarity=-0.029 Sum_probs=26.7
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
.+|+++|+|+.|.. .......+.+..++... +.+++++||.-
T Consensus 117 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 158 (218)
T 4djt_A 117 EAPIVVCANKIDIK--NRQKISKKLVMEVLKGK--NYEYFEISAKT 158 (218)
T ss_dssp SSCEEEEEECTTCC------CCHHHHHHHTTTC--CCEEEEEBTTT
T ss_pred CCCEEEEEECCCCc--cccccCHHHHHHHHHHc--CCcEEEEecCC
Confidence 47999999997642 11122334455666554 67899999864
No 82
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.11 E-value=4.9 Score=28.97 Aligned_cols=45 Identities=7% Similarity=-0.138 Sum_probs=25.6
Q ss_pred ccCceEEEEeCCCcccccc-ccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKK-KNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~-~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..-... ..-..+..++++... +.+++++||+-
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 152 (170)
T 1ek0_A 107 KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK--GLLFFETSAKT 152 (170)
T ss_dssp TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH--TCEEEECCTTT
T ss_pred CCCcEEEEEECCCccccccccCCCHHHHHHHHHHc--CCEEEEEeCCC
Confidence 4678899999865321100 111233445555554 56788888763
No 83
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=80.10 E-value=1.3 Score=30.76 Aligned_cols=48 Identities=15% Similarity=0.085 Sum_probs=38.5
Q ss_pred EecC-CCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEE
Q psy17313 118 TIQK-GTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 184 (197)
Q Consensus 118 ti~~-GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~ 184 (197)
.++. |+|+.++|..||+.+.+.-+-|+| .|++ ..-++.+++|+.|.|.
T Consensus 23 ~~~~~~~T~~dia~~i~~~l~~~~vaakv-----------------Ng~l--~dL~~~l~~d~~ve~v 71 (88)
T 1wwt_A 23 DAESWKTTPYQIACGISQGLADNTVIAKV-----------------NNVV--WDLDRPLEEDCTLELL 71 (88)
T ss_dssp EEETTTCCHHHHHHHSSTTTGGGCCCEEE-----------------SSSE--ECSSSCCCSSEEEEEC
T ss_pred EcccCCCCHHHHHHHhhhccccceEEEEE-----------------CCEE--ECCCcCcCCCCEEEEE
Confidence 3566 899999999999999999888874 2444 4688999999887764
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=79.05 E-value=7.8 Score=29.44 Aligned_cols=42 Identities=10% Similarity=-0.072 Sum_probs=25.9
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhc----------CCCCeEEEechh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN----------DPGATIIPFSGV 64 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~----------~~~~~vv~~sa~ 64 (197)
..+|+++|+|+.|..- ....+++++++... ..+.+++++||+
T Consensus 123 ~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 123 KDVPFVILGNKIDAPN----AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp TTCCEEEEEECTTSTT----CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred cCCCEEEEEECCCCcC----CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 5689999999976421 22345566554321 114568888976
No 85
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=78.94 E-value=4.9 Score=32.30 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=28.0
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
.-|+|+|+|+.|.. ....-..++.++++++. +.+++.+||+-
T Consensus 118 ~~piilVgNK~Dl~--~~r~V~~~e~~~~a~~~--~~~~~e~SAkt 159 (216)
T 4dkx_A 118 DVIIMLVGNKTDLA--DKRQVSIEEGERKAKEL--NVMFIETSAKA 159 (216)
T ss_dssp SSEEEEEEECTTCG--GGCCSCHHHHHHHHHHH--TCEEEEEBTTT
T ss_pred CCeEEEEeeccchH--hcCcccHHHHhhHHHHh--CCeeEEEeCCC
Confidence 45889999997632 11222456667777776 57788888863
No 86
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=78.47 E-value=3.6 Score=30.93 Aligned_cols=44 Identities=9% Similarity=-0.024 Sum_probs=29.2
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...+|+++|+|+.|..- ...-..+..++++... +.+++++||+-
T Consensus 125 ~~~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 168 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRS--AIQVPTDLAQKFADTH--SMPLFETSAKN 168 (189)
T ss_dssp CSCCCEEEEEECTTCGG--GCCSCHHHHHHHHHHT--TCCEEECCSSS
T ss_pred CCCCCEEEEEECccccc--cceeCHHHHHHHHHHc--CCEEEEEeCCc
Confidence 45689999999976421 1122345566677665 56789999874
No 87
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=77.88 E-value=2.3 Score=35.11 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=25.8
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
.+|+++|+|+.|..-...-....+.+.+.. +.+++++||.-.
T Consensus 110 ~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~vi~~SA~~g 151 (256)
T 3iby_A 110 GKPVVVALNMMDIAEHRGISIDTEKLESLL-----GCSVIPIQAHKN 151 (256)
T ss_dssp CSCEEEEEECHHHHHHTTCEECHHHHHHHH-----CSCEEECBGGGT
T ss_pred CCCEEEEEEChhcCCcCCcHHHHHHHHHHc-----CCCEEEEECCCC
Confidence 589999999975421111112344444433 578999998753
No 88
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=77.82 E-value=8.7 Score=33.47 Aligned_cols=111 Identities=12% Similarity=0.185 Sum_probs=56.3
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHH----HhhcCCCC---eEEEechhhchhhcCCCHHHHHHHHHH-----hC
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEW----VDANDPGA---TIIPFSGVFEHQLVDMPDDERQRYLDE-----QK 85 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~----~~~~~~~~---~vv~~sa~~E~el~~l~~ee~~~fl~~-----~g 85 (197)
+..||+++|+|+.| +.. .....+++++| ..+. +. .++++||+--.-+.+|-. .-..+++. .|
T Consensus 96 l~~~piilV~NK~D--Ll~-~~~~~~~~~~~l~~~~~~~--g~~~~~v~~iSA~~g~gi~~L~~-~I~~~~~~~~i~~vG 169 (369)
T 3ec1_A 96 AADNPILLVGNKAD--LLP-RSVKYPKLLRWMRRMAEEL--GLCPVDVCLVSAAKGIGMAKVME-AINRYREGGDVYVVG 169 (369)
T ss_dssp CTTSCEEEEEECGG--GSC-TTCCHHHHHHHHHHHHHTT--TCCCSEEEECBTTTTBTHHHHHH-HHHHHHTTSCEEEEC
T ss_pred hCCCCEEEEEEChh--cCC-CccCHHHHHHHHHHHHHHc--CCCcccEEEEECCCCCCHHHHHH-HHHhhcccCcEEEEc
Confidence 45899999999965 321 12223445544 3333 33 689999875443322211 01111111 14
Q ss_pred -CcchHHHHHHHHHhhc------CCeEEeecCCCceeeeEecCCCChhhhhhhhcc
Q psy17313 86 -ATSVLDKIITQGYKSL------QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHT 134 (197)
Q Consensus 86 -~~sgl~~li~~~y~lL------~LitffT~g~~EvRAWti~~GstA~~aAg~IHs 134 (197)
.+.|-..++++..... --.+-++--..+.....+..+.+..|..|.++.
T Consensus 170 ~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 170 CTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINH 225 (369)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCC
T ss_pred CCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcH
Confidence 4566666776666541 112223211123334445666777777777644
No 89
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=77.17 E-value=3.2 Score=36.39 Aligned_cols=51 Identities=25% Similarity=0.278 Sum_probs=30.0
Q ss_pred ccccccCceEEEEeCCCccccccccccHHHHHHHHhhcC-CCCeEEEechhh
Q psy17313 15 LNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-PGATIIPFSGVF 65 (197)
Q Consensus 15 ~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~-~~~~vv~~sa~~ 65 (197)
+..+-.+|+|+|+|+.|..-........++++++++... .+.+++++||.-
T Consensus 132 ~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~ 183 (410)
T 1kk1_A 132 LQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALH 183 (410)
T ss_dssp HHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTT
T ss_pred HHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCC
Confidence 334445899999999764211001124556667765421 256899999864
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=76.84 E-value=12 Score=28.05 Aligned_cols=43 Identities=9% Similarity=-0.023 Sum_probs=26.2
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHh--hc-CCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVD--AN-DPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~--~~-~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. + ....+.+.+++. .. ..+.+++++||+-
T Consensus 125 ~~~piilv~nK~Dl~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 125 RRIPILFFANKMDLR--D--AVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp SCCCEEEEEECTTST--T--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred CCCeEEEEEeCcCcc--c--CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 468999999997642 1 223455555552 10 1146788999763
No 91
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=76.69 E-value=5.9 Score=31.07 Aligned_cols=49 Identities=16% Similarity=0.030 Sum_probs=26.7
Q ss_pred ccCceEEEEeCCCcccccc-ccccHHHHHHHHhhcCCCCeEEEechhhch
Q psy17313 19 TAKTQIYLVNLSAKDYIKK-KNKWLPKIKEWVDANDPGATIIPFSGVFEH 67 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~-~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~ 67 (197)
..+|+++|+|+.|..-... .....+.+++++...++..+++++||+-..
T Consensus 141 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 190 (228)
T 2qu8_A 141 SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGV 190 (228)
T ss_dssp -CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCT
T ss_pred cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCC
Confidence 4789999999975421110 011122345565544111678999987543
No 92
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=76.39 E-value=5.2 Score=29.01 Aligned_cols=43 Identities=9% Similarity=0.014 Sum_probs=24.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhh---cCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~---~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. . .....++.+.... ...+.+++++||+-
T Consensus 107 ~~~piilv~nK~Dl~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 107 RKAILVVFANKQDME--Q--AMTSSEMANSLGLPALKDRKWQIFKTSATK 152 (171)
T ss_dssp TTCEEEEEEECTTST--T--CCCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred CCCEEEEEEECCCCc--C--CCCHHHHHHHhCchhccCCceEEEECcCCC
Confidence 578999999997642 1 1122333322211 11145788999864
No 93
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=76.31 E-value=2.3 Score=35.28 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=24.9
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
.+|+|+|+|+.|..-...-....+.+.+ .. +.+++++||.-.
T Consensus 112 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~---~l--g~~~i~~SA~~g 153 (274)
T 3i8s_A 112 GIPCIVALNMLDIAEKQNIRIEIDALSA---RL--GCPVIPLVSTRG 153 (274)
T ss_dssp TCCEEEEEECHHHHHHTTEEECHHHHHH---HH--TSCEEECCCGGG
T ss_pred CCCEEEEEECccchhhhhHHHHHHHHHH---hc--CCCEEEEEcCCC
Confidence 6899999999753211111123334433 33 578999998743
No 94
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=76.01 E-value=4.5 Score=29.91 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=23.5
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
.+|+|+|+|+.|..-...-.. ..+++++.. +.+++++||+-
T Consensus 108 ~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~--~~~~~~~SA~~ 148 (165)
T 2wji_A 108 GANLLLALNKMDLAKSLGIEI---DVDKLEKIL--GVKVVPLSAAK 148 (165)
T ss_dssp TCCEEEEEECHHHHHHTTCCC---CHHHHHHHH--TSCEEECBGGG
T ss_pred CCCEEEEEEchHhccccChhh---HHHHHHHHh--CCCEEEEEcCC
Confidence 589999999965321100011 234444444 46788999863
No 95
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=75.96 E-value=7.1 Score=34.10 Aligned_cols=107 Identities=12% Similarity=0.167 Sum_probs=54.6
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHH----HhhcCCCC---eEEEechhhchhhcCCCHHHHHHHHHH-------
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEW----VDANDPGA---TIIPFSGVFEHQLVDMPDDERQRYLDE------- 83 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~----~~~~~~~~---~vv~~sa~~E~el~~l~~ee~~~fl~~------- 83 (197)
+..+|+++|+|+.|- .. .....+++++| +++. +. +++.+||+-..-+.+| .+.+..
T Consensus 94 ~~~~p~ilV~NK~DL--~~-~~~~~~~~~~~l~~~~~~~--g~~~~~v~~iSA~~g~gi~~L-----~~~l~~~~~~~~i 163 (368)
T 3h2y_A 94 VGNNKVLLVGNKADL--IP-KSVKHDKVKHWMRYSAKQL--GLKPEDVFLISAAKGQGIAEL-----ADAIEYYRGGKDV 163 (368)
T ss_dssp SSSSCEEEEEECGGG--SC-TTSCHHHHHHHHHHHHHHT--TCCCSEEEECCTTTCTTHHHH-----HHHHHHHHTTSCE
T ss_pred hCCCcEEEEEEChhc--CC-cccCHHHHHHHHHHHHHHc--CCCcccEEEEeCCCCcCHHHH-----HhhhhhhcccceE
Confidence 357999999999753 21 12223444444 3333 33 7899998754433322 122221
Q ss_pred --hC-CcchHHHHHHHHHhhc-----CCe--EEeecCCCceeeeEecCCCChhhhhhhhcc
Q psy17313 84 --QK-ATSVLDKIITQGYKSL-----QLQ--YFFTAGQDEVKAWTIQKGTKAPQAAGRIHT 134 (197)
Q Consensus 84 --~g-~~sgl~~li~~~y~lL-----~Li--tffT~g~~EvRAWti~~GstA~~aAg~IHs 134 (197)
.| .+.|-..++++..... ... +-++.-........+..+.+..|..|.++.
T Consensus 164 ~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~ 224 (368)
T 3h2y_A 164 YVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINH 224 (368)
T ss_dssp EEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCT
T ss_pred EEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcH
Confidence 14 4566666666665542 121 222211122334455566667777776544
No 96
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=75.85 E-value=10 Score=28.12 Aligned_cols=43 Identities=16% Similarity=-0.005 Sum_probs=25.3
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhh---cCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~---~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- ....+.+.+.... ...+.+++++||+-
T Consensus 118 ~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 118 AGATLLIFANKQDLPG----ALSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp TTCEEEEEEECTTSTT----CCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCCcEEEEEeCccCCC----CCCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 5689999999976421 2233444443321 11245788999864
No 97
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=75.35 E-value=3.4 Score=31.21 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=27.2
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..-. ...-..+.+++++.+. +.+++++||+-
T Consensus 131 ~~~piilv~nK~Dl~~~-~~~v~~~~~~~~~~~~--~~~~~~~Sa~~ 174 (208)
T 2yc2_C 131 RPLRAVLVANKTDLPPQ-RHQVRLDMAQDWATTN--TLDFFDVSANP 174 (208)
T ss_dssp SCCEEEEEEECC--------CCCHHHHHHHHHHT--TCEEEECCC--
T ss_pred cCCcEEEEEECcccchh-hccCCHHHHHHHHHHc--CCEEEEeccCC
Confidence 46899999999764210 1122346677787776 57899999876
No 98
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=75.23 E-value=7.3 Score=29.61 Aligned_cols=45 Identities=11% Similarity=-0.175 Sum_probs=26.0
Q ss_pred ccCceEEEEeCCCcccc----ccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYI----KKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~----~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..-. ....-..+..++++... +.+++++||+-
T Consensus 132 ~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~SA~~ 180 (199)
T 2p5s_A 132 ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY--GALFCETSAKD 180 (199)
T ss_dssp --CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH--TCEEEECCTTT
T ss_pred CCCCEEEEEECcccccccccccccccCHHHHHHHHHHc--CCeEEEeeCCC
Confidence 36899999999764210 00111234455666555 57889999863
No 99
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=75.10 E-value=4.4 Score=34.94 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=26.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcC-----CCCeEEEechhhch
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-----PGATIIPFSGVFEH 67 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~-----~~~~vv~~sa~~E~ 67 (197)
..+|+++|+|+.|..-........+.+.+...... -+.+++++||.-..
T Consensus 216 ~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~ 269 (355)
T 3p32_A 216 LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGR 269 (355)
T ss_dssp GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB
T ss_pred hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCC
Confidence 34799999999874311001122333433321111 13579999997533
No 100
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=75.08 E-value=4.3 Score=29.91 Aligned_cols=42 Identities=14% Similarity=-0.045 Sum_probs=26.3
Q ss_pred cCceEEEEeCCCcccccccc----------ccHHHHHHHHhhcCCCC-eEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKN----------KWLPKIKEWVDANDPGA-TIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~----------~~~~~l~~~~~~~~~~~-~vv~~sa~~ 65 (197)
.+|+++|+|+.|.. .... -..+...+++... +. +++++||+-
T Consensus 112 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 112 GVPIVLVGTKLDLR--DDKQFFIDHPGAVPITTVQGEELKKLI--GAPAYIECSSKS 164 (182)
T ss_dssp TCCEEEEEECHHHH--TCHHHHHHC--CCCCCHHHHHHHHHHH--TCSEEEECCTTT
T ss_pred CCCEEEEEechhhh--cCcccccccccCCCCCHHHHHHHHHHc--CCCEEEEEECCC
Confidence 68999999996532 1111 1234556666655 43 789999863
No 101
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=75.05 E-value=14 Score=27.48 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=25.7
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhh---cCCCCeEEEechhh
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVF 65 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~---~~~~~~vv~~sa~~ 65 (197)
...+|+++|+|+.|.. . ....+++.+.... ...+.+++++||+-
T Consensus 115 ~~~~piilv~NK~Dl~--~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 115 LRKAGLLIFANKQDVK--E--CMTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp GTTCEEEEEEECTTST--T--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred hCCCeEEEEEECCCCc--C--CCCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 3578999999997642 1 1223444443321 11145788999763
No 102
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=74.86 E-value=7.2 Score=28.65 Aligned_cols=44 Identities=14% Similarity=-0.025 Sum_probs=25.8
Q ss_pred cCceEEEEeCCCcccccc----------ccccHHHHHHHHhhcCCCC-eEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKK----------KNKWLPKIKEWVDANDPGA-TIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~----------~~~~~~~l~~~~~~~~~~~-~vv~~sa~~ 65 (197)
.+|+++|+|+.|..-... ..-..+...+++... +. +++++||.-
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~ 163 (186)
T 1mh1_A 109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI--GAVKYLECSALT 163 (186)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--TCSEEEECCTTT
T ss_pred CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc--CCcEEEEecCCC
Confidence 789999999965321000 011233445566555 44 789999863
No 103
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=74.76 E-value=4.7 Score=32.96 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=25.1
Q ss_pred CceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 21 KTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 21 KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
+|+++|+|+.|..-........+.+.+.. +.+++|+||.--
T Consensus 110 ~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~~~~~Sa~~g 150 (271)
T 3k53_A 110 KNIILVLNKFDLLKKKGAKIDIKKMRKEL-----GVPVIPTNAKKG 150 (271)
T ss_dssp CSEEEEEECHHHHHHHTCCCCHHHHHHHH-----SSCEEECBGGGT
T ss_pred CCEEEEEEChhcCcccccHHHHHHHHHHc-----CCcEEEEEeCCC
Confidence 99999999976311111122344444433 578999998753
No 104
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=74.67 E-value=8.2 Score=28.85 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=24.3
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHH------hhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWV------DANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~------~~~~~~~~vv~~sa~~ 65 (197)
.+|+|+|+|+.|..- ....+.+.+.. +.. +.+++++||+-
T Consensus 127 ~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 172 (199)
T 4bas_A 127 RVPFLFFANKMDAAG----AKTAAELVEILDLTTLMGDH--PFVIFASNGLK 172 (199)
T ss_dssp BCCEEEEEECTTSTT----CCCHHHHHHHHTHHHHHTTS--CEEEEECBTTT
T ss_pred CCCEEEEEECcCCCC----CCCHHHHHHHhcchhhccCC--eeEEEEeeCCC
Confidence 789999999976421 21223333221 222 56889999874
No 105
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=73.93 E-value=15 Score=27.95 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=26.9
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
...|+|+|+|+.|.. ....-..+..+.++... +.+++.+||+-.
T Consensus 113 ~~~piilV~NK~Dl~--~~r~v~~~~~~~~a~~~--~~~~~e~SA~~g 156 (192)
T 2cjw_A 113 EDIPIILVGNKSDLV--RXREVSVSEGRAXAVVF--DXKFIETSAAVQ 156 (192)
T ss_dssp SCCCEEEEEECTTCG--GGCCSCHHHHHHHHHHT--TCEEEECBTTTT
T ss_pred CCCeEEEEEechhhh--ccccccHHHHHHHHHHh--CCceEEeccccC
Confidence 358999999997632 11112334444555554 467889998753
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=73.39 E-value=5.8 Score=32.23 Aligned_cols=42 Identities=7% Similarity=0.156 Sum_probs=26.9
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+|+|+|+.|.. ....++.+++++.+.. +.+++.+||+-
T Consensus 197 ~~~piilV~NK~Dl~----~~~~v~~~~~~~~~~~-~~~~~e~SAk~ 238 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEG----VERYIRDAHTFALSKK-NLQVVETSARS 238 (255)
T ss_dssp TTCCEEEEEECGGGB----CHHHHHHHHHHHHTSS-SCCEEECBTTT
T ss_pred CCCCEEEEEEccccc----ccHHHHHHHHHHHhcC-CCeEEEEECCC
Confidence 458999999997532 1223456666765431 46788889763
No 107
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=73.30 E-value=4.1 Score=33.57 Aligned_cols=43 Identities=14% Similarity=-0.041 Sum_probs=25.7
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhch
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEH 67 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~ 67 (197)
.+|+++|+|+.|..-...-... +.++.+.. +.+++++||.-..
T Consensus 110 ~~pvilv~NK~Dl~~~~~i~~~---~~~l~~~l--g~~vi~~SA~~g~ 152 (258)
T 3a1s_A 110 EKKVILAMTAIDEAKKTGMKID---RYELQKHL--GIPVVFTSSVTGE 152 (258)
T ss_dssp TCCEEEEEECHHHHHHTTCCBC---HHHHHHHH--CSCEEECCTTTCT
T ss_pred CCCEEEEEECcCCCCccchHHH---HHHHHHHc--CCCEEEEEeeCCc
Confidence 6899999999764211111112 33444444 5789999986533
No 108
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=72.88 E-value=6.8 Score=30.14 Aligned_cols=45 Identities=9% Similarity=-0.069 Sum_probs=25.6
Q ss_pred ccCceEEEEeCCCcccccc----------ccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 19 TAKTQIYLVNLSAKDYIKK----------KNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~----------~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
..+|+++|+|+.|..-... ..-..+....+++..+ ..+++++||+
T Consensus 133 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~SA~ 187 (204)
T 4gzl_A 133 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-AVKYLECSAL 187 (204)
T ss_dssp SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-CSEEEECCTT
T ss_pred CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC-CcEEEEeeCC
Confidence 4689999999975321000 0012334455665542 2468888876
No 109
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=72.66 E-value=3.7 Score=35.80 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=34.0
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHhCCcchHHHHHHHH
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQG 97 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g~~sgl~~li~~~ 97 (197)
+..+|+++|+|+.|..- ..+ .++++.+......+++++||.- ..|++.|+..+
T Consensus 272 l~~~p~ilV~NK~Dl~~---~~e---~~~~l~~~l~~~~~v~~iSA~t---------------------g~gi~eL~~~l 324 (342)
T 1lnz_A 272 LTERPQIIVANKMDMPE---AAE---NLEAFKEKLTDDYPVFPISAVT---------------------REGLRELLFEV 324 (342)
T ss_dssp TTTSCBCBEEECTTSTT---HHH---HHHHHHHHCCSCCCBCCCSSCC---------------------SSTTHHHHHHH
T ss_pred hcCCCEEEEEECccCCC---CHH---HHHHHHHHhhcCCCEEEEECCC---------------------CcCHHHHHHHH
Confidence 57899999999976421 122 2333333321124678888763 34666666666
Q ss_pred HhhcC
Q psy17313 98 YKSLQ 102 (197)
Q Consensus 98 y~lL~ 102 (197)
.+.|.
T Consensus 325 ~~~l~ 329 (342)
T 1lnz_A 325 ANQLE 329 (342)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66553
No 110
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=72.41 E-value=4.3 Score=33.92 Aligned_cols=41 Identities=10% Similarity=-0.036 Sum_probs=24.4
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
.+|+++|+|+.|..-...-... +.++.+.. +.+++++||.-
T Consensus 107 ~~p~ilv~NK~Dl~~~~~~~~~---~~~l~~~l--g~~vi~~SA~~ 147 (272)
T 3b1v_A 107 GIPVTIALNMIDVLDGQGKKIN---VDKLSYHL--GVPVVATSALK 147 (272)
T ss_dssp CSCEEEEEECHHHHHHTTCCCC---HHHHHHHH--TSCEEECBTTT
T ss_pred CCCEEEEEEChhhCCcCCcHHH---HHHHHHHc--CCCEEEEEccC
Confidence 6899999999653211111112 33344333 57899999874
No 111
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=72.02 E-value=17 Score=26.66 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=26.2
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhhc---CCCCeEEEechhh
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN---DPGATIIPFSGVF 65 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~---~~~~~vv~~sa~~ 65 (197)
...+|+++|+|+.|.. . ....+.+.++.... ..+.+++++||.-
T Consensus 117 ~~~~piilv~nK~Dl~--~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 163 (183)
T 1moz_A 117 LQDAALLVFANKQDQP--G--ALSASEVSKELNLVELKDRSWSIVASSAIK 163 (183)
T ss_dssp TSSCEEEEEEECTTST--T--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred hCCCeEEEEEECCCCC--C--CCCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 4678999999997642 1 22234455443221 1134789999874
No 112
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=71.04 E-value=13 Score=27.53 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=25.3
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhh---cCCCCeEEEechhh
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVF 65 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~---~~~~~~vv~~sa~~ 65 (197)
...+|+++|+|+.|..- ....+.+.++... ...+.+++++||+-
T Consensus 120 ~~~~piilv~NK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 120 LRKAGLLIFANKQDVKE----CMTVAEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp GTTCEEEEEEECTTSTT----CCCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred hCCCeEEEEEECCCccc----CCCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 36789999999976421 1223444443321 11145788999763
No 113
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=70.29 E-value=10 Score=28.33 Aligned_cols=44 Identities=9% Similarity=-0.032 Sum_probs=26.7
Q ss_pred cCceEEEEeCCCccccc----------cccccHHHHHHHHhhcCCCC-eEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIK----------KKNKWLPKIKEWVDANDPGA-TIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~----------~~~~~~~~l~~~~~~~~~~~-~vv~~sa~~ 65 (197)
..|+++|+|+.|..-.. ...-..+...+++.+. +. +++++||+-
T Consensus 122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~ 176 (194)
T 2atx_A 122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI--GACCYVECSALT 176 (194)
T ss_dssp TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH--TCSCEEECCTTT
T ss_pred CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc--CCcEEEEeeCCC
Confidence 68999999997642100 0011234556666655 34 688888763
No 114
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=70.19 E-value=7.6 Score=27.96 Aligned_cols=43 Identities=7% Similarity=-0.072 Sum_probs=23.8
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhh---cCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~---~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..- ....+.+.+.... ...+.+++++||+-
T Consensus 100 ~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 145 (164)
T 1r8s_A 100 RDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRHRNWYIQATCATS 145 (164)
T ss_dssp TTCEEEEEEECTTSTT----CCCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred cCCeEEEEEECcCCcC----CCCHHHHHHHhCcccccCccEEEEEcccCC
Confidence 4689999999976421 2223334332211 01145688888763
No 115
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=69.61 E-value=3 Score=32.38 Aligned_cols=41 Identities=10% Similarity=-0.096 Sum_probs=25.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|.. . .........++... +.+++++||+-
T Consensus 118 ~~~p~ilv~nK~Dl~--~--~~~~~~~~~~~~~~--~~~~~~~Sa~~ 158 (221)
T 3gj0_A 118 ENIPIVLCGNKVDIK--D--RKVKAKSIVFHRKK--NLQYYDISAKS 158 (221)
T ss_dssp TTCCEEEEEECTTSS--S--CSSCGGGCCHHHHH--TCEEEECBGGG
T ss_pred CCCCEEEEEECCccc--c--ccccHHHHHHHHHc--CCEEEEEeCCC
Confidence 368999999997642 1 11112333444444 57899999874
No 116
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=69.45 E-value=6.6 Score=29.38 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=24.6
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhh---cCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~---~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- ....+++.+.... ...+.+++++||+-
T Consensus 122 ~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 122 RKSLLLIFANKQDLPD----AASEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp TTCEEEEEEECTTSTT----CCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCCeEEEEEECCCCcC----CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 5789999999976421 2223344432211 11145789999864
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=68.85 E-value=7.7 Score=28.80 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=24.5
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..-. ......++++++.. +.+++++||+-
T Consensus 111 ~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~--~~~~~~~Sa~~ 152 (188)
T 2wjg_A 111 MGANLLLALNKMDLAKS---LGIEIDVDKLEKIL--GVKVVPLSAAK 152 (188)
T ss_dssp TTCCEEEEEECHHHHHH---TTCCCCHHHHHHHH--TSCEEECBGGG
T ss_pred cCCCEEEEEEhhhcccc---ccchHHHHHHHHHh--CCCeEEEEecC
Confidence 45899999999653211 11112334444444 46789999874
No 118
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=68.31 E-value=14 Score=28.57 Aligned_cols=45 Identities=13% Similarity=-0.037 Sum_probs=26.8
Q ss_pred ccCceEEEEeCCCccccccc----------cccHHHHHHHHhhcCCCC-eEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKK----------NKWLPKIKEWVDANDPGA-TIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~----------~~~~~~l~~~~~~~~~~~-~vv~~sa~~ 65 (197)
...|+++|+|+.|..-.... .-..++..+++... +. +++++||+-
T Consensus 137 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~SA~~ 192 (214)
T 2j1l_A 137 KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV--GAVAYLECSARL 192 (214)
T ss_dssp SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT--TCSEEEECBTTT
T ss_pred CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc--CCCEEEEecCCC
Confidence 46899999999764211000 11223455666655 44 789999864
No 119
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=67.71 E-value=16 Score=27.69 Aligned_cols=45 Identities=9% Similarity=-0.072 Sum_probs=25.5
Q ss_pred ccCceEEEEeCCCcccccc----------ccccHHHHHHHHhhcCCCC-eEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKK----------KNKWLPKIKEWVDANDPGA-TIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~----------~~~~~~~l~~~~~~~~~~~-~vv~~sa~~ 65 (197)
...|+++|+|+.|..-... ..-..+...+++... +. +++++||+-
T Consensus 128 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~SA~~ 183 (201)
T 2gco_A 128 PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI--SAFGYLECSAKT 183 (201)
T ss_dssp TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT--TCSEEEECCTTT
T ss_pred CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC--CCcEEEEeeCCC
Confidence 3689999999976421000 001223444555554 34 788888764
No 120
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=67.40 E-value=16 Score=27.47 Aligned_cols=44 Identities=16% Similarity=-0.079 Sum_probs=26.7
Q ss_pred cCceEEEEeCCCccccc----------cccccHHHHHHHHhhcCCCC-eEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIK----------KKNKWLPKIKEWVDANDPGA-TIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~----------~~~~~~~~l~~~~~~~~~~~-~vv~~sa~~ 65 (197)
..|+++|+|+.|..-.. ...-..+....++... +. +++++||+-
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~ 178 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI--KAASYIECSALT 178 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--TCSEEEECCTTT
T ss_pred CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc--CCcEEEEEecCC
Confidence 68999999997642100 0111334556666554 34 789999864
No 121
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=66.92 E-value=18 Score=27.55 Aligned_cols=14 Identities=14% Similarity=0.041 Sum_probs=11.6
Q ss_pred ccCceEEEEeCCCc
Q psy17313 19 TAKTQIYLVNLSAK 32 (197)
Q Consensus 19 T~KP~iyv~Nv~e~ 32 (197)
..+|+++|+|+.|.
T Consensus 128 ~~~piilv~nK~Dl 141 (207)
T 2fv8_A 128 PNVPIILVANKKDL 141 (207)
T ss_dssp TTCCEEEEEECGGG
T ss_pred CCCCEEEEEEchhh
Confidence 36899999999754
No 122
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=66.70 E-value=8 Score=29.54 Aligned_cols=43 Identities=12% Similarity=-0.096 Sum_probs=26.3
Q ss_pred cCceEEEEeCCCcccccccc--------ccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKN--------KWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~--------~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..|+++|+|+.|. ..... -..+.+.+++...+ ..+++++||.-
T Consensus 113 ~~piilv~nK~Dl--~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~ 163 (212)
T 2j0v_A 113 NVPIVLVGTKLDL--RDDKGYLADHTNVITSTQGEELRKQIG-AAAYIECSSKT 163 (212)
T ss_dssp TCCEEEEEECHHH--HTCHHHHHTCSSCCCHHHHHHHHHHHT-CSEEEECCTTT
T ss_pred CCCEEEEEeCHHh--hhCccccccccCCCCHHHHHHHHHHcC-CceEEEccCCC
Confidence 6899999999653 21001 03455566666552 13788999863
No 123
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=65.97 E-value=2.4 Score=34.50 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=40.3
Q ss_pred eEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEE
Q psy17313 117 WTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 184 (197)
Q Consensus 117 Wti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~ 184 (197)
-.++.|+|+.|+|..||+.+.+.-+-|+| .|++ ...++.+++|+.|.|.
T Consensus 12 ~~~~~g~T~~dia~~i~~~l~~~~vaakv-----------------Ng~l--~dL~~~l~~~~~ve~i 60 (224)
T 1tke_A 12 RHYDHAVSPMDVALDIGPGLAKACIAGRV-----------------NGEL--VDACDLIENDAQLSII 60 (224)
T ss_dssp EECSSCBCHHHHHHHHCHHHHHHCCEEEE-----------------TTEE--EETTCCBCSCEEEEEE
T ss_pred EEecCCCCHHHHHHHHhhhcccceEEEEE-----------------CCEE--eccceEcCCCCeEEEE
Confidence 56789999999999999999999888874 2444 4578999999988764
No 124
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=65.95 E-value=16 Score=26.51 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=11.6
Q ss_pred ccCceEEEEeCCCc
Q psy17313 19 TAKTQIYLVNLSAK 32 (197)
Q Consensus 19 T~KP~iyv~Nv~e~ 32 (197)
...|+++|+|+.|.
T Consensus 106 ~~~p~ilv~nK~Dl 119 (178)
T 2lkc_A 106 ANVPIIVAINKMDK 119 (178)
T ss_dssp GSCCEEEEEETTTS
T ss_pred CCCCEEEEEECccC
Confidence 46899999999764
No 125
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=65.71 E-value=15 Score=28.44 Aligned_cols=45 Identities=9% Similarity=-0.117 Sum_probs=28.5
Q ss_pred ccCceEEEEeCCCcccc----------ccccccHHHHHHHHhhcCCCC-eEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYI----------KKKNKWLPKIKEWVDANDPGA-TIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~----------~~~~~~~~~l~~~~~~~~~~~-~vv~~sa~~ 65 (197)
...|+++|+|+.|..-. ....-..+...+++... +. +++.+||+-
T Consensus 130 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~SA~~ 185 (214)
T 3q3j_B 130 PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL--GAEIYLEGSAFT 185 (214)
T ss_dssp TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH--TCSEEEECCTTT
T ss_pred CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc--CCCEEEEeccCC
Confidence 36899999999764210 00112445666777666 45 788999864
No 126
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=65.63 E-value=13 Score=27.46 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=24.4
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCC-----CeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPG-----ATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~-----~~vv~~sa~~ 65 (197)
...|+++|+|+.|..- ...+.+++++++.+-. .+++++||+-
T Consensus 121 ~~~piilv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIK-----NVQEVINFLAEKFEVPLSEIDKVFIPISAKF 167 (190)
T ss_dssp TTCCEEEEEECGGGCS-----CHHHHHHHHHHHHTCCGGGHHHHEEECCTTT
T ss_pred cCCceEEEeehHhccC-----cHHHHHHHHHHHhhhhhhccCCcEEEEecCC
Confidence 3689999999975421 1133445555444211 1478889863
No 127
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=64.89 E-value=1.2 Score=37.75 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=43.1
Q ss_pred ccCceEEEEeCCCcccccccc-ccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHH-----HhC-CcchHH
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKN-KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD-----EQK-ATSVLD 91 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~-~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~-----~~g-~~sgl~ 91 (197)
..+|+++|+|+.|- ..... ...+.+.++..+. +.+++++||+-..-+.+| .+++. -.| .++|-.
T Consensus 109 ~~~~~ilV~NK~DL--~~~~~v~~~~~~~~~~~~~--g~~~~~~SA~~g~gi~~L-----~~~l~G~i~~l~G~sG~GKS 179 (302)
T 2yv5_A 109 FKVEPVIVFNKIDL--LNEEEKKELERWISIYRDA--GYDVLKVSAKTGEGIDEL-----VDYLEGFICILAGPSGVGKS 179 (302)
T ss_dssp TTCEEEEEECCGGG--CCHHHHHHHHHHHHHHHHT--TCEEEECCTTTCTTHHHH-----HHHTTTCEEEEECSTTSSHH
T ss_pred CCCCEEEEEEcccC--CCccccHHHHHHHHHHHHC--CCeEEEEECCCCCCHHHH-----HhhccCcEEEEECCCCCCHH
Confidence 56899999999753 21010 1244455555554 578999998754323222 12221 224 467777
Q ss_pred HHHHHHHhhcCC
Q psy17313 92 KIITQGYKSLQL 103 (197)
Q Consensus 92 ~li~~~y~lL~L 103 (197)
.|++... ++..
T Consensus 180 TLln~l~-~~~~ 190 (302)
T 2yv5_A 180 SILSRLT-GEEL 190 (302)
T ss_dssp HHHHHHH-SCCC
T ss_pred HHHHHHH-HhhC
Confidence 7888777 6543
No 128
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=64.71 E-value=12 Score=27.98 Aligned_cols=43 Identities=12% Similarity=-0.121 Sum_probs=23.4
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhh---cCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~---~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..- ....+++.+.... ...+.+++++||+-
T Consensus 123 ~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPG----ALDEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp TTCCEEEEEECTTSTT----CCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCCCEEEEEECCCCcc----CCCHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 5789999999976421 1112333322211 11145688888763
No 129
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=64.63 E-value=6.4 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=22.2
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCC-eEEEechh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGA-TIIPFSGV 64 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~-~vv~~sa~ 64 (197)
...|+++|+|+.|..- .. +.++++. +. +. +++++||+
T Consensus 107 ~~~p~ilv~nK~Dl~~---~~---~~~~~~~-~~--~~~~~~~~Sa~ 144 (161)
T 2dyk_A 107 KGKPVILVATKVDDPK---HE---LYLGPLY-GL--GFGDPIPTSSE 144 (161)
T ss_dssp HTCCEEEEEECCCSGG---GG---GGCGGGG-GG--SSCSCEECBTT
T ss_pred cCCCEEEEEECccccc---ch---HhHHHHH-hC--CCCCeEEEecc
Confidence 4689999999976421 11 2233344 22 33 67888976
No 130
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=64.61 E-value=4 Score=30.37 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=17.5
Q ss_pred cCCceeecCCCEEEEEEccCCCC
Q psy17313 169 QGRAYTVEDGDIIFFKFNAGAGL 191 (197)
Q Consensus 169 eGkdYivqDGDIi~f~fn~~~~~ 191 (197)
.|.+|.++|||.|.|---....|
T Consensus 81 ~gldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCCC-
T ss_pred CCcccCCCCcCEEEEeCCCcccc
Confidence 68999999999999955444444
No 131
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=64.40 E-value=4.2 Score=34.21 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=30.3
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcCC
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDM 72 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l 72 (197)
+..||+++|+|+.| +.. ....+...++.++. +.+++++||.-..-+.+|
T Consensus 48 l~~kp~ilVlNK~D--L~~--~~~~~~~~~~~~~~--g~~~i~iSA~~~~gi~~L 96 (282)
T 1puj_A 48 LKNKPRIMLLNKAD--KAD--AAVTQQWKEHFENQ--GIRSLSINSVNGQGLNQI 96 (282)
T ss_dssp CSSSCEEEEEECGG--GSC--HHHHHHHHHHHHTT--TCCEEECCTTTCTTGGGH
T ss_pred HCCCCEEEEEECcc--cCC--HHHHHHHHHHHHhc--CCcEEEEECCCcccHHHH
Confidence 37899999999965 321 12233333444333 567999999865545443
No 132
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=63.96 E-value=13 Score=28.12 Aligned_cols=43 Identities=2% Similarity=-0.062 Sum_probs=24.1
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhh---cCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~---~~~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|.. . ....+++.+.... ...+.+++++||.-
T Consensus 129 ~~~piilv~NK~Dl~--~--~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 129 RDAVLLVFANKQDMP--N--AMPVSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp TTCEEEEEEECTTST--T--CCCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred CCCeEEEEEECCCCC--C--CCCHHHHHHHhCcccccCCceEEEECcCCC
Confidence 468999999997642 1 2223344432211 11135688889763
No 133
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=63.74 E-value=14 Score=30.09 Aligned_cols=44 Identities=14% Similarity=-0.045 Sum_probs=26.7
Q ss_pred cCceEEEEeCCCccccc----------cccccHHHHHHHHhhcCCCC-eEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIK----------KKNKWLPKIKEWVDANDPGA-TIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~----------~~~~~~~~l~~~~~~~~~~~-~vv~~sa~~ 65 (197)
.+|+++|+|+.|..-.. ...-..+...++++.. +. +++++||+-
T Consensus 259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI--GAVKYLECSALT 313 (332)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--TCSEEEECCTTT
T ss_pred CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc--CCcEEEEecCCC
Confidence 78999999997531100 0011334555666665 44 789999863
No 134
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=63.26 E-value=1.6 Score=33.42 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=21.9
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
.+|+++|+|+.|..-. .....+..++++... +.+++++||+
T Consensus 138 ~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~--~~~~~~vSA~ 178 (199)
T 3l0i_B 138 NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSL--GIPFLETSAK 178 (199)
T ss_dssp CSEEEEC-CCSSCC----CCCCSCC-CHHHHTT--TCCBCCCCC-
T ss_pred CCCEEEEEECccCCcc--ccCCHHHHHHHHHHc--CCeEEEEECC
Confidence 6899999999764211 111122344455544 5678888875
No 135
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=62.76 E-value=34 Score=25.40 Aligned_cols=43 Identities=14% Similarity=-0.008 Sum_probs=24.5
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhh---cCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~---~~~~~~vv~~sa~~ 65 (197)
..+|+++|+|+.|..- ....+.+.+.... ...+.+++++||+-
T Consensus 116 ~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 116 SCVPVLIFANKQDLLT----AAPASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp TTCCEEEEEECTTSTT----CCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCEEEEEECcCccc----CCCHHHHHHHhCchhccCCceEEEEccCCC
Confidence 5689999999976421 1223344432211 11145688899863
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=62.55 E-value=19 Score=32.77 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=28.2
Q ss_pred ccccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhch
Q psy17313 17 LLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEH 67 (197)
Q Consensus 17 lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~ 67 (197)
++..+|+|+|+|+.|.. . ....+.++++.. . +.+++++||+-..
T Consensus 347 ~l~~~piivV~NK~DL~--~--~~~~~~~~~~~~-~--~~~~i~iSAktg~ 390 (482)
T 1xzp_A 347 RIKNKRYLVVINKVDVV--E--KINEEEIKNKLG-T--DRHMVKISALKGE 390 (482)
T ss_dssp HHTTSSEEEEEEECSSC--C--CCCHHHHHHHHT-C--STTEEEEEGGGTC
T ss_pred HhcCCCEEEEEECcccc--c--ccCHHHHHHHhc-C--CCcEEEEECCCCC
Confidence 34689999999997642 1 112355655543 1 3578999997543
No 137
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=62.49 E-value=15 Score=32.59 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=43.2
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcC---CCCeEEEechhhchhhcCCCHHHHHHHHHHhC---CcchHHH
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPDDERQRYLDEQK---ATSVLDK 92 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~---~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g---~~sgl~~ 92 (197)
..+|+|+|+|+.|. ........+++.+++.+.- .+.+++++||+-..-+.+|-+. -.+.+.... ..+-+++
T Consensus 305 ~~~~~ilv~NK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~-i~~~~~~~~~~~~t~~ln~ 381 (456)
T 4dcu_A 305 AGKAVVIVVNKWDA--VDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPA-IIKASENHSLRVQTNVLND 381 (456)
T ss_dssp TTCEEEEEEECGGG--SCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHH-HHHHHHHHTCCCCHHHHHH
T ss_pred cCCCEEEEEEChhc--CCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHH-HHHHHHHhcccCCHHHHHH
Confidence 56999999999753 2212223344444443321 1468999999876656554221 112233332 2345777
Q ss_pred HHHHHHhh
Q psy17313 93 IITQGYKS 100 (197)
Q Consensus 93 li~~~y~l 100 (197)
++..+...
T Consensus 382 ~l~~~~~~ 389 (456)
T 4dcu_A 382 VIMDAVAM 389 (456)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77655543
No 138
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=59.54 E-value=30 Score=30.61 Aligned_cols=58 Identities=12% Similarity=-0.036 Sum_probs=33.9
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhc---CCCCeEEEechhhchhhcCCCHHHHHHHHHHhCCcchHHHHHH
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIIT 95 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~---~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g~~sgl~~li~ 95 (197)
..+|+|+|+|+.|.. . ......+.+..... ..+.+++++||.- +.|+++++.
T Consensus 422 ~~~p~ilv~NK~Dl~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~---------------------g~gi~~l~~ 476 (497)
T 3lvq_E 422 RDAIILIFANKQDLP--D--AMKPHEIQEKLGLTRIRDRNWYVQPSCATS---------------------GDGLYEGLT 476 (497)
T ss_dssp TTCEEEEEEECCSSS--S--CCCHHHHHHHTTCTTCCSSCEEEEECBTTT---------------------TBTHHHHHH
T ss_pred CCCcEEEEEECCCCC--c--CCCHHHHHHHhchhhhhcCCeEEEEEECCC---------------------CCCHHHHHH
Confidence 579999999997642 1 22234444332111 1134689999863 346777766
Q ss_pred HHHhhc
Q psy17313 96 QGYKSL 101 (197)
Q Consensus 96 ~~y~lL 101 (197)
.+.+.+
T Consensus 477 ~l~~~~ 482 (497)
T 3lvq_E 477 WLTSNY 482 (497)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 666554
No 139
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=59.53 E-value=33 Score=29.05 Aligned_cols=43 Identities=7% Similarity=-0.065 Sum_probs=25.0
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhc---CCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN---DPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~---~~~~~vv~~sa~~ 65 (197)
..+|+|+|+|+.|..- ....+++....... ..+.+++++||+-
T Consensus 265 ~~~piilV~NK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 265 RDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp TTCEEEEEEECTTSTT----CCCHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred CCCeEEEEEECccCCc----ccCHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 4789999999976421 22234444333221 1245788999863
No 140
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=59.31 E-value=1.2 Score=37.72 Aligned_cols=80 Identities=9% Similarity=0.039 Sum_probs=42.3
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHhC-CcchHHHHHHHH
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQG 97 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g-~~sgl~~li~~~ 97 (197)
..+|+|+|+|+.| +.. ...+++++++++......+++++||+--.-+.+|-...+.++..-+| .++|-..+++..
T Consensus 114 ~~~piilv~NK~D--L~~--~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 114 NELETVMVINKMD--LYD--EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp TTCEEEEEECCGG--GCC--HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEEeHHH--cCC--chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHHHh
Confidence 4689999999965 321 11224456666554201678999987543332221000011112235 567777777766
Q ss_pred HhhcC
Q psy17313 98 YKSLQ 102 (197)
Q Consensus 98 y~lL~ 102 (197)
..++.
T Consensus 190 ~g~~~ 194 (301)
T 1u0l_A 190 NPGLK 194 (301)
T ss_dssp STTCC
T ss_pred ccccc
Confidence 55544
No 141
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=59.17 E-value=4.5 Score=29.89 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=18.9
Q ss_pred CcccccC-CceeecCCCEEEEEEccC
Q psy17313 164 GKYRQQG-RAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 164 Gk~r~eG-kdYivqDGDIi~f~fn~~ 188 (197)
|++-..| .+|.|+|||.|.|++-.+
T Consensus 75 g~~~~~Ga~~~~v~dGD~i~~~~t~~ 100 (101)
T 3u7z_A 75 GEQVNTSADQTPVSDGDAFELTLKEG 100 (101)
T ss_dssp TEECCSCGGGCBCCTTCEEEEEEEEC
T ss_pred CEEhhhchhheEecCCCEEEEEEecC
Confidence 4444444 689999999999998654
No 142
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=58.71 E-value=16 Score=30.61 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=26.4
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+|+|+++|+.|..- ......+.+.++.+..+ -..++|+||+-
T Consensus 115 ~~~P~ilvlNK~D~~~--~~~~~~~~l~~l~~~~~-~~~~i~iSA~~ 158 (301)
T 1ega_A 115 GKAPVILAVNKVDNVQ--EKADLLPHLQFLASQMN-FLDIVPISAET 158 (301)
T ss_dssp SSSCEEEEEESTTTCC--CHHHHHHHHHHHHTTSC-CSEEEECCTTT
T ss_pred cCCCEEEEEECcccCc--cHHHHHHHHHHHHHhcC-cCceEEEECCC
Confidence 3699999999976421 01223344555554432 13689999863
No 143
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=57.03 E-value=13 Score=30.86 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=48.7
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHh-------C-CcchHH
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQ-------K-ATSVLD 91 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~-------g-~~sgl~ 91 (197)
.||.++|+|+.| +.. ....+...++.++. +.++ ++||.-..-+. +-.+.+... | .+.|-.
T Consensus 46 ~k~~iivlNK~D--L~~--~~~~~~~~~~~~~~--g~~v-~iSa~~~~gi~-----~L~~~l~~~~~~v~~vG~~~vGKS 113 (262)
T 3cnl_A 46 RKETIILLNKVD--IAD--EKTTKKWVEFFKKQ--GKRV-ITTHKGEPRKV-----LLKKLSFDRLARVLIVGVPNTGKS 113 (262)
T ss_dssp TSEEEEEEECGG--GSC--HHHHHHHHHHHHHT--TCCE-EECCTTSCHHH-----HHHHHCCCTTCEEEEEESTTSSHH
T ss_pred CCCcEEEEECcc--CCC--HHHHHHHHHHHHHc--CCeE-EEECCCCcCHH-----HHHHHHHHhhhheEEeCCCCCCHH
Confidence 899999999965 332 12233333444443 5667 89986543222 111222221 4 445666
Q ss_pred HHHHHHHhhcCCeEEeecCCC-ceeeeEecCCCChhhhhhhhcccc
Q psy17313 92 KIITQGYKSLQLQYFFTAGQD-EVKAWTIQKGTKAPQAAGRIHTDF 136 (197)
Q Consensus 92 ~li~~~y~lL~LitffT~g~~-EvRAWti~~GstA~~aAg~IHsDf 136 (197)
.+|.+....-...+=-+.|.. ...-..+..+.+..|.+|.....+
T Consensus 114 slin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 114 TIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNI 159 (262)
T ss_dssp HHHHHHHTTCC----------CCSCEEECTTSCEEESSCEECCCCC
T ss_pred HHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcccCcC
Confidence 666555432211111111110 111122345567777777765433
No 144
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=53.94 E-value=6.4 Score=34.18 Aligned_cols=53 Identities=6% Similarity=0.162 Sum_probs=28.4
Q ss_pred HHHhhcccccccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 9 IEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 9 ~~~i~~~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
..+++.+. ...|+|+|+|+.|..-...-....+.+.+++..+ +.+++++||.-
T Consensus 165 ~~~~~~l~--~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~--~i~~~~~Sa~~ 217 (361)
T 2qag_A 165 VAFMKAIH--NKVNIVPVIAKADTLTLKERERLKKRILDEIEEH--NIKIYHLPDAE 217 (361)
T ss_dssp HHHHHHTC--S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC---CCSCCCC---
T ss_pred HHHHHHhc--cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC--CCCEEeCCCcC
Confidence 34555543 5689999999986421100011224566666555 56788888763
No 145
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=52.83 E-value=19 Score=26.70 Aligned_cols=45 Identities=11% Similarity=-0.074 Sum_probs=27.3
Q ss_pred ccCceEEEEeCCCccccc----------cccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 19 TAKTQIYLVNLSAKDYIK----------KKNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~----------~~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
...|+++|+|+.|..-.. ...-..+...+++++.+ ..+++++||+
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~ 164 (184)
T 1m7b_A 110 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATYIECSAL 164 (184)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEEEECBTT
T ss_pred CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-CcEEEEeeec
Confidence 468999999997642100 00112345666776652 2578999986
No 146
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=52.56 E-value=28 Score=31.57 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=22.6
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
.+|+|+|+|+.|..- .... ..+++.+.. ..+++++||+-
T Consensus 343 ~~piIvV~NK~Dl~~----~~~~-~~~~l~~~~--~~~~i~vSAkt 381 (476)
T 3gee_A 343 AAKFLTVANKLDRAA----NADA-LIRAIADGT--GTEVIGISALN 381 (476)
T ss_dssp TSEEEEEEECTTSCT----TTHH-HHHHHHHHH--TSCEEECBTTT
T ss_pred CCCEEEEEECcCCCC----ccch-hHHHHHhcC--CCceEEEEECC
Confidence 799999999976421 1111 112232221 24689999873
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=52.08 E-value=9.5 Score=33.33 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=34.3
Q ss_pred ccCceEEEEeCCCccccccc-cccHHHHHHHHhhc-CCCCeEEEechhhchhhcCCCHHHHHHHHHHhCCcchHHHHHHH
Q psy17313 19 TAKTQIYLVNLSAKDYIKKK-NKWLPKIKEWVDAN-DPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQ 96 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~-~~~~~~l~~~~~~~-~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g~~sgl~~li~~ 96 (197)
..+|+|+|.|+.|. .... ......+..++... .++.+++++||.- ..|++.+...
T Consensus 291 ~~~p~ilV~NK~Dl--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~---------------------g~gi~~L~~~ 347 (364)
T 2qtf_A 291 SGKPILVTLNKIDK--INGDLYKKLDLVEKLSKELYSPIFDVIPISALK---------------------RTNLELLRDK 347 (364)
T ss_dssp CSCCEEEEEECGGG--CCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT---------------------TBSHHHHHHH
T ss_pred CCCCEEEEEECCCC--CCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC---------------------CcCHHHHHHH
Confidence 56899999999653 2111 01112222222322 1134678899752 3466666666
Q ss_pred HHhhcCCeEEeecCC
Q psy17313 97 GYKSLQLQYFFTAGQ 111 (197)
Q Consensus 97 ~y~lL~LitffT~g~ 111 (197)
+.+.+.-...++.+|
T Consensus 348 I~~~l~~~~~~~~~~ 362 (364)
T 2qtf_A 348 IYQLATQLSLEHHHH 362 (364)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHhcccCCCCCCC
Confidence 666655555554443
No 148
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=51.56 E-value=21 Score=26.97 Aligned_cols=13 Identities=0% Similarity=-0.115 Sum_probs=11.3
Q ss_pred ccCceEEEEeCCC
Q psy17313 19 TAKTQIYLVNLSA 31 (197)
Q Consensus 19 T~KP~iyv~Nv~e 31 (197)
...|+++|+|+.|
T Consensus 128 ~~~piilv~nK~D 140 (196)
T 3llu_A 128 PDMNFEVFIHKVD 140 (196)
T ss_dssp TTCEEEEEEECGG
T ss_pred CCCcEEEEEeccc
Confidence 4789999999976
No 149
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=51.38 E-value=20 Score=30.53 Aligned_cols=50 Identities=6% Similarity=0.003 Sum_probs=25.8
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCC-----CCeEEEechhhchhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDP-----GATIIPFSGVFEHQL 69 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~-----~~~vv~~sa~~E~el 69 (197)
.+|.++|+|+.|..-.......++.+++.....++ ..+++++||.-..-+
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi 248 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGI 248 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCH
Confidence 57999999998642100001112234332222111 246899998754433
No 150
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=50.41 E-value=15 Score=32.34 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=32.4
Q ss_pred ccccCceEEEEeCCCccccccccc----cHHHHHHHHhhcC---CCCeEEEechhhchhhcCC
Q psy17313 17 LLTAKTQIYLVNLSAKDYIKKKNK----WLPKIKEWVDAND---PGATIIPFSGVFEHQLVDM 72 (197)
Q Consensus 17 lLT~KP~iyv~Nv~e~d~~~~~~~----~~~~l~~~~~~~~---~~~~vv~~sa~~E~el~~l 72 (197)
.+-.+|+|+|+|+.|.. +.... ..+.+++++++.+ ++.+++++||.-..-+.++
T Consensus 154 ~~~~~~iIvviNK~Dl~--~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 154 LLGIKHIVVAINKMDLN--GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HTTCCEEEEEEECTTTT--TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HcCCCeEEEEEEcCcCC--cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 34457899999997642 10111 2344556665542 1267999999876656554
No 151
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=50.26 E-value=18 Score=27.08 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=11.0
Q ss_pred ccCceEEEEeCCCc
Q psy17313 19 TAKTQIYLVNLSAK 32 (197)
Q Consensus 19 T~KP~iyv~Nv~e~ 32 (197)
...|+|+|+|+.|.
T Consensus 111 ~~~piilv~nK~Dl 124 (184)
T 2zej_A 111 SSSPVILVGTHLDV 124 (184)
T ss_dssp TTCEEEEEEECGGG
T ss_pred CCCcEEEEEECCCc
Confidence 36899999999653
No 152
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=49.00 E-value=3.3 Score=36.68 Aligned_cols=80 Identities=9% Similarity=0.027 Sum_probs=43.1
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhc-CCCCeEEEechhhchhhcCCCHHHHHHHHHHhC-CcchHHHHHHH
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN-DPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQ 96 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~-~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g-~~sgl~~li~~ 96 (197)
..+|.|+|+|+.| +.. ....+.+++|...+ ..|.+++++||.-..-+.+|+...+-+..--.| .++|-..|++.
T Consensus 159 ~~~~~iivlNK~D--L~~--~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~ 234 (358)
T 2rcn_A 159 LQVEPLIVLNKID--LLD--DEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNA 234 (358)
T ss_dssp HTCEEEEEEECGG--GCC--HHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTSSHHHHHHH
T ss_pred cCCCEEEEEECcc--CCC--chhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCccHHHHHHH
Confidence 5688999999965 322 11212344444321 126789999987554444332211111122235 56777778877
Q ss_pred HHhhcC
Q psy17313 97 GYKSLQ 102 (197)
Q Consensus 97 ~y~lL~ 102 (197)
....+.
T Consensus 235 L~g~~~ 240 (358)
T 2rcn_A 235 LLGLQN 240 (358)
T ss_dssp HHCCSS
T ss_pred Hhcccc
Confidence 665554
No 153
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=48.79 E-value=19 Score=26.14 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=30.6
Q ss_pred eeeEecCCCChhhhhhhh-----cccccc-CeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEE
Q psy17313 115 KAWTIQKGTKAPQAAGRI-----HTDFEK-GFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKF 185 (197)
Q Consensus 115 RAWti~~GstA~~aAg~I-----HsDfek-gFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~f 185 (197)
....++.|+|+.|+-... |.++.= ++ ...|. | +...-+++++|||.|.|--
T Consensus 28 ~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~-~V~Vn-----------------g--~~v~~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 28 KSFQVDEGITVQTAITQSGILSQFPEIDLSTN-KIGIF-----------------S--RPIKLTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEETTCBHHHHHHHHTHHHHCTTCCTTTS-EEEEE-----------------E--CSCCTTCBCCTTCEEEECC
T ss_pred EEEEcCCCCcHHHHHHHcCCCccCCccccccc-EEEEc-----------------C--EECCCCccCCCCCEEEEEe
Confidence 355678999998876543 222211 22 22222 2 2245899999999998753
No 154
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=47.93 E-value=23 Score=27.98 Aligned_cols=14 Identities=21% Similarity=0.029 Sum_probs=11.4
Q ss_pred ccCceEEEEeCCCc
Q psy17313 19 TAKTQIYLVNLSAK 32 (197)
Q Consensus 19 T~KP~iyv~Nv~e~ 32 (197)
..+|+++|+|+.|.
T Consensus 170 ~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 170 LGATTIPALNKVDL 183 (262)
T ss_dssp HTSCEEEEECCGGG
T ss_pred cCCCeEEEEecccc
Confidence 36899999999753
No 155
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=47.28 E-value=18 Score=32.70 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=26.7
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhc-C-CCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN-D-PGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~-~-~~~~vv~~sa~~ 65 (197)
..|+|+|+|+.|..-...-+...++++++++.. . ++.+++++||.-
T Consensus 125 ~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 125 NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 478899999976421100122344555665443 1 146799999864
No 156
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=47.01 E-value=14 Score=28.05 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=21.4
Q ss_pred HHHcCcccccCC----ceeecCCCEEEEEEc
Q psy17313 160 CRAAGKYRQQGR----AYTVEDGDIIFFKFN 186 (197)
Q Consensus 160 ak~~Gk~r~eGk----dYivqDGDIi~f~fn 186 (197)
+...|.+++.|+ .|.|+.||+|.|.+.
T Consensus 30 li~~G~V~VNG~~vk~s~~V~~GD~I~I~~~ 60 (133)
T 1dm9_A 30 MIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 (133)
T ss_dssp HHHTTCEEETTEECCTTCBCCTTCEEEEEET
T ss_pred HHHCCcEEECCEEcCCCCEeCCCCEEEEEeC
Confidence 445677877774 789999999999874
No 157
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=46.07 E-value=13 Score=27.60 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.0
Q ss_pred cCCceeecCCCEEEEEEccCCC
Q psy17313 169 QGRAYTVEDGDIIFFKFNAGAG 190 (197)
Q Consensus 169 eGkdYivqDGDIi~f~fn~~~~ 190 (197)
.|.+|.++|||.|.|.=-+...
T Consensus 87 ~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 87 GELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp CTTTCBCCSSEEEEEEECSCCC
T ss_pred CCcCcCCCCCCEEEEeCCCCCC
Confidence 6899999999999996655544
No 158
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=45.18 E-value=31 Score=28.96 Aligned_cols=38 Identities=16% Similarity=0.025 Sum_probs=22.9
Q ss_pred cCceEEEEeCCCccccccccc-cHHHHHHHHhhcCCCCeEEEechh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNK-WLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~-~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
.+|+|+|+|+.|.. . ... ..+.++++ .+..+++|+||.
T Consensus 117 ~~p~ilV~NK~Dl~--~-~~~~~~~~~~~~----~~~~~~~~iSA~ 155 (301)
T 1wf3_A 117 KVPILLVGNKLDAA--K-YPEEAMKAYHEL----LPEAEPRMLSAL 155 (301)
T ss_dssp TSCEEEEEECGGGC--S-SHHHHHHHHHHT----STTSEEEECCTT
T ss_pred CCCEEEEEECcccC--C-chHHHHHHHHHh----cCcCcEEEEeCC
Confidence 68999999997642 1 111 22333343 123578999986
No 159
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=45.00 E-value=27 Score=30.75 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=40.8
Q ss_pred ccCceEEEEeCCCccccccccc----cHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHhC---CcchHH
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNK----WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK---ATSVLD 91 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~----~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g---~~sgl~ 91 (197)
..+|+|+|+|+.|. ...... ..+.+.+..... .+.+++++||+-..-+.+|-+.=.+ .+.... ..+-++
T Consensus 285 ~~~~iiiv~NK~Dl--~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~SA~tg~~v~~l~~~i~~-~~~~~~~~~~t~~ln 360 (436)
T 2hjg_A 285 AGKAVVIVVNKWDA--VDKDESTMKEFEENIRDHFQFL-DYAPILFMSALTKKRIHTLMPAIIK-ASENHSLRVQTNVLN 360 (436)
T ss_dssp TTCEEEEEEECGGG--SCCCTTHHHHHHHHHHHHCGGG-TTSCEEECCTTTCTTGGGHHHHHHH-HHHHHTCCCCHHHHH
T ss_pred cCCcEEEEEECccC--CCcchHHHHHHHHHHHHhcccC-CCCCEEEEecccCCCHHHHHHHHHH-HHHHhhcCCCHHHHH
Confidence 46999999999753 211121 222333222211 1578999999876666554221111 222222 234577
Q ss_pred HHHHHHHhh
Q psy17313 92 KIITQGYKS 100 (197)
Q Consensus 92 ~li~~~y~l 100 (197)
+++..+-..
T Consensus 361 ~~l~~~~~~ 369 (436)
T 2hjg_A 361 DVIMDAVAM 369 (436)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777655543
No 160
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=44.69 E-value=7.9 Score=28.98 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=29.2
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHhCCcchHHHHHHHHHh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYK 99 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g~~sgl~~li~~~y~ 99 (197)
.+|+|+|+|+.|. ..... +++... +.+++++||+- +.|++.+...+.+
T Consensus 115 ~~p~ilv~NK~Dl--~~~~~-------~~~~~~--~~~~~~~SA~~---------------------g~gv~~l~~~l~~ 162 (172)
T 2gj8_A 115 KLPITVVRNKADI--TGETL-------GMSEVN--GHALIRLSART---------------------GEGVDVLRNHLKQ 162 (172)
T ss_dssp TCCEEEEEECHHH--HCCCC-------EEEEET--TEEEEECCTTT---------------------CTTHHHHHHHHHH
T ss_pred CCCEEEEEECccC--Ccchh-------hhhhcc--CCceEEEeCCC---------------------CCCHHHHHHHHHH
Confidence 5899999999653 11001 112122 45788888763 3466666666666
Q ss_pred hcCC
Q psy17313 100 SLQL 103 (197)
Q Consensus 100 lL~L 103 (197)
.+.+
T Consensus 163 ~~~~ 166 (172)
T 2gj8_A 163 SMGF 166 (172)
T ss_dssp HC--
T ss_pred Hhhh
Confidence 5543
No 161
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=44.48 E-value=15 Score=33.28 Aligned_cols=44 Identities=18% Similarity=-0.003 Sum_probs=27.2
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhch
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEH 67 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~ 67 (197)
.+|+|+|+|+.|..- ......+.+++++... +.+++++||+-..
T Consensus 150 ~~pvilV~NK~Dl~~--~~~v~~~~~~~~~~~~--~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 150 KSPVIVVMNKIDENP--SYNIEQKKINERFPAI--ENRFHRISCKNGD 193 (535)
T ss_dssp SCCEEEEECCTTTCT--TCCCCHHHHHHHCGGG--TTCEEECCC----
T ss_pred CCCEEEEEECCCccc--ccccCHHHHHHHHHhc--CCceEEEecCccc
Confidence 489999999976421 1222455666666555 4678999987543
No 162
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=44.36 E-value=18 Score=23.97 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=36.4
Q ss_pred eecCCCceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEEc
Q psy17313 107 FTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 186 (197)
Q Consensus 107 fT~g~~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~fn 186 (197)
|....-++.-++++.|...+ ...|.+.+.-|+--+ -.+.+...|+.|.++.||++.|--+
T Consensus 23 ~~~~~~~~~~~~~~pg~~~~---~H~H~~~~e~~~v~~-----------------G~~~~~~~~~~~~l~~Gd~~~ip~~ 82 (105)
T 1v70_A 23 FQSERMLYDLYALLPGQAQK---VHVHEGSDKVYYALE-----------------GEVVVRVGEEEALLAPGMAAFAPAG 82 (105)
T ss_dssp EEETTEEEEEEEECTTCEEE---EECCSSCEEEEEEEE-----------------SCEEEEETTEEEEECTTCEEEECTT
T ss_pred cCCCceEEEEEEECCCCcCC---ccCCCCCcEEEEEEe-----------------CEEEEEECCEEEEeCCCCEEEECCC
Confidence 33333345567778887654 344543332222211 2345667889999999999987655
Q ss_pred cC
Q psy17313 187 AG 188 (197)
Q Consensus 187 ~~ 188 (197)
++
T Consensus 83 ~~ 84 (105)
T 1v70_A 83 AP 84 (105)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 163
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=44.35 E-value=3 Score=36.07 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=27.9
Q ss_pred ccCceEEEEeCCCcccccccc--ccHHHHHHHHhhcCCCCeEEEechhhchhhc
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKN--KWLPKIKEWVDANDPGATIIPFSGVFEHQLV 70 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~--~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~ 70 (197)
..||.++|+|+.| +..... +.++.+.++.... +.+++++||.-..-+.
T Consensus 116 ~~~~~vivlnK~D--L~~~~~~~~~~~~~~~~y~~~--g~~v~~~sa~~~~g~~ 165 (307)
T 1t9h_A 116 NDIQPIICITKMD--LIEDQDTEDTIQAYAEDYRNI--GYDVYLTSSKDQDSLA 165 (307)
T ss_dssp TTCEEEEEEECGG--GCCCHHHHHHHHHHHHHHHHH--TCCEEECCHHHHTTCT
T ss_pred CCCCEEEEEECCc--cCchhhhHHHHHHHHHHHHhC--CCeEEEEecCCCCCHH
Confidence 5699999999975 322111 1234444443333 5789999986543333
No 164
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=44.02 E-value=16 Score=32.73 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=33.6
Q ss_pred ccccccCceEEEEeCCCccccccccc----cHHHHHHHHhhcC---CCCeEEEechhhchhhcCCCH
Q psy17313 15 LNLLTAKTQIYLVNLSAKDYIKKKNK----WLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPD 74 (197)
Q Consensus 15 ~~lLT~KP~iyv~Nv~e~d~~~~~~~----~~~~l~~~~~~~~---~~~~vv~~sa~~E~el~~l~~ 74 (197)
...+..+|+|+|+|+.|. .+.... ..+.+.+++...+ .+.+++++||.--.-+.++++
T Consensus 166 ~~~~~~~~iIvviNK~Dl--~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 166 ASSLGIHNLIIAMNKMDN--VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp HHHTTCCCEEEEEECGGG--GTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred HHHcCCCcEEEEEECcCc--ccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 334556889999999763 210111 2333444443221 135789999987776777643
No 165
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=43.63 E-value=20 Score=31.88 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=33.3
Q ss_pred HHhhcccccccCceEEEEeCCCcccccc----ccccHHHHHHHHhhcC----CCCeEEEechhhchhhcCC
Q psy17313 10 EHLNKLNLLTAKTQIYLVNLSAKDYIKK----KNKWLPKIKEWVDAND----PGATIIPFSGVFEHQLVDM 72 (197)
Q Consensus 10 ~~i~~~~lLT~KP~iyv~Nv~e~d~~~~----~~~~~~~l~~~~~~~~----~~~~vv~~sa~~E~el~~l 72 (197)
+.+..+..+-.+|+|+|+|+.|..-.+. -+...+++.+++++.+ .+.+++|+||.--.-+.+|
T Consensus 145 e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l 215 (439)
T 3j2k_7 145 EHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQ 215 (439)
T ss_pred HHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccc
Confidence 3333333444455999999987421100 1122334445554321 1357999999765555554
No 166
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=41.87 E-value=12 Score=34.91 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=24.2
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHH---HhhcCCCCeEEEechhh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEW---VDANDPGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~---~~~~~~~~~vv~~sa~~ 65 (197)
..|+|+|+|+.|..-.+ .......+.++ +...+...+++++||.-
T Consensus 104 ~vPiIVViNKiDl~~~~-~~~v~~~l~~~~~~~e~~~~~~~iv~vSAkt 151 (537)
T 3izy_P 104 HVPIVLAINKCDKAEAD-PEKVKKELLAYDVVCEDYGGDVQAVHVSALT 151 (537)
T ss_dssp TCCEEECCBSGGGTTTS-CCSSSSHHHHTTSCCCCSSSSEEECCCCSSS
T ss_pred CCcEEEEEecccccccc-hHHHHHHHHhhhhhHHhcCCCceEEEEECCC
Confidence 47999999997642111 12222333332 22222235788999863
No 167
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=41.19 E-value=13 Score=27.36 Aligned_cols=45 Identities=7% Similarity=0.259 Sum_probs=26.4
Q ss_pred hccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEE
Q psy17313 132 IHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKF 185 (197)
Q Consensus 132 IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~f 185 (197)
+.-|..+|++....++-+. +. -.|+.-.-|..|.++|||++++..
T Consensus 47 L~~~~~~g~v~vk~lg~Np-----~~----vng~~l~k~~~~~L~~GD~l~Ll~ 91 (102)
T 3kt9_A 47 LKAECNKGYVKVKQVGVNP-----TS----IDSVVIGKDQEVKLQPGQVLHMVN 91 (102)
T ss_dssp EEEETTTTEEEEEECSSSC-----CE----ETTEECCBTCEEEECTTCCEEEET
T ss_pred EEEecCCCEEEEEECcCCC-----Ce----ECCEEcCCCCeEEeCCCCEEEEcc
Confidence 3345556776666444222 11 124333345669999999998764
No 168
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=40.86 E-value=14 Score=27.59 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=28.8
Q ss_pred hccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEE
Q psy17313 132 IHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKF 185 (197)
Q Consensus 132 IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~f 185 (197)
++-|..+|++....++-+- +--.|+.-.-|..|.+++||++++..
T Consensus 53 L~ad~~~~~v~vk~lG~Np---------~~vng~~l~k~~~~~L~~GD~leLl~ 97 (110)
T 2brf_A 53 LVADPETRTVAVKQLGVNP---------STTGTQELKPGLEGSLGVGDTLYLVN 97 (110)
T ss_dssp EEEETTTTEEEEEECSSSC---------CEEC-CBCCTTCEEEEETTCEEEEET
T ss_pred EEEecCCCEEEEEEcccCC---------cEECCEEcCCCCEEEecCCCEEEEcc
Confidence 4557778888877654332 11122333458899999999999753
No 169
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=39.44 E-value=39 Score=25.99 Aligned_cols=45 Identities=11% Similarity=-0.074 Sum_probs=27.0
Q ss_pred ccCceEEEEeCCCccccc----------cccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 19 TAKTQIYLVNLSAKDYIK----------KKNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~----------~~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
...|+++|+|+.|..-.. ...-..+..++++++.+ ..+++++||+
T Consensus 131 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk 185 (205)
T 1gwn_A 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATYIECSAL 185 (205)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEEEECCTT
T ss_pred CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-CCEEEEeeec
Confidence 468999999997642100 00112345666666542 2578899986
No 170
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=38.64 E-value=40 Score=29.29 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=26.0
Q ss_pred Cce-EEEEe-CCCccccccccccHHHHHHHHhhcC-CCCeEEE--echhh
Q psy17313 21 KTQ-IYLVN-LSAKDYIKKKNKWLPKIKEWVDAND-PGATIIP--FSGVF 65 (197)
Q Consensus 21 KP~-iyv~N-v~e~d~~~~~~~~~~~l~~~~~~~~-~~~~vv~--~sa~~ 65 (197)
.|. |+++| +.|. -...-....++++++++..+ ...++++ +||.-
T Consensus 112 i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 112 FKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp CCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred CCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 566 99999 8764 11001123355666665432 2468999 99875
No 171
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=38.57 E-value=37 Score=29.86 Aligned_cols=76 Identities=9% Similarity=0.004 Sum_probs=37.9
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHH----hhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHhC---CcchHH
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWV----DANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK---ATSVLD 91 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~----~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g---~~sgl~ 91 (197)
..+|+++|+|+.|.. .......+++.+.. ... .+.+++++||+--.-+.+|-+ .-.+.++.+. ..+-|+
T Consensus 291 ~~~~~ilv~NK~Dl~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~-~i~~~~~~~~~~i~t~~ln 366 (439)
T 1mky_A 291 RGRASVVVFNKWDLV--VHREKRYDEFTKLFREKLYFI-DYSPLIFTSADKGWNIDRMID-AMNLAYASYTTKVPSSAIN 366 (439)
T ss_dssp TTCEEEEEEECGGGS--TTGGGCHHHHHHHHHHHCGGG-TTSCEEECBTTTTBSHHHHHH-HHHHHHHHHTCCCCHHHHH
T ss_pred cCCCEEEEEECccCC--CchhhHHHHHHHHHHHHhccC-CCCcEEEEECCCCCCHHHHHH-HHHHHHHhhcccCCHHHHH
Confidence 569999999997532 11111233332221 111 146899999975543433311 1112223332 234577
Q ss_pred HHHHHHH
Q psy17313 92 KIITQGY 98 (197)
Q Consensus 92 ~li~~~y 98 (197)
+++...-
T Consensus 367 ~~l~~~~ 373 (439)
T 1mky_A 367 SALQKVL 373 (439)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
No 172
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=37.82 E-value=23 Score=29.62 Aligned_cols=47 Identities=13% Similarity=0.018 Sum_probs=28.6
Q ss_pred ccCceEEEEeCCCcccccccc----ccHHHHHHHHhhcC-CCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKN----KWLPKIKEWVDAND-PGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~----~~~~~l~~~~~~~~-~~~~vv~~sa~~ 65 (197)
...|+++|+|+.|..-..... -..+.+++++...+ ++.+++++||.-
T Consensus 114 ~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~ 165 (307)
T 3r7w_A 114 PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD 165 (307)
T ss_dssp TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS
T ss_pred CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC
Confidence 368999999997632100011 12245667776652 126899999875
No 173
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=37.77 E-value=17 Score=26.81 Aligned_cols=19 Identities=16% Similarity=0.506 Sum_probs=16.2
Q ss_pred ccccCCceeecCCCEEEEE
Q psy17313 166 YRQQGRAYTVEDGDIIFFK 184 (197)
Q Consensus 166 ~r~eGkdYivqDGDIi~f~ 184 (197)
++.-||.|.|+.||++.+.
T Consensus 5 i~~gGkQykV~~Gd~i~ve 23 (103)
T 3r8s_R 5 FQSGGKQHRVSEGQTVRLE 23 (103)
T ss_dssp EECSSSEEEEETTCEEEES
T ss_pred EEECCEEEEEeCCCEEEEC
Confidence 4567999999999999874
No 174
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=37.21 E-value=25 Score=31.78 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=22.9
Q ss_pred cccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
+..+|+++|+|+.|..- ......++++. .+.+++++||+-
T Consensus 328 l~~~piivV~NK~Dl~~----~~~~~~~~~~~----~~~~~i~iSAkt 367 (462)
T 3geh_A 328 VKHRPLILVMNKIDLVE----KQLITSLEYPE----NITQIVHTAAAQ 367 (462)
T ss_dssp HTTSCEEEEEECTTSSC----GGGSTTCCCCT----TCCCEEEEBTTT
T ss_pred ccCCcEEEEEECCCCCc----chhhHHHHHhc----cCCcEEEEECCC
Confidence 34589999999976421 11111122221 145789999874
No 175
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=36.20 E-value=10 Score=32.32 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.8
Q ss_pred HcCcccccCCceeecCCCEEEEEEccCCC
Q psy17313 162 AAGKYRQQGRAYTVEDGDIIFFKFNAGAG 190 (197)
Q Consensus 162 ~~Gk~r~eGkdYivqDGDIi~f~fn~~~~ 190 (197)
-+|.+++.|+-|.|+.||+|++.-+++-+
T Consensus 216 G~g~y~l~~~~~~V~~GD~i~~~~~~~h~ 244 (266)
T 4e2q_A 216 GQGIYRLGDNWYPVQAGDVIWMAPFVPQW 244 (266)
T ss_dssp CEEEEEETTEEEEEETTCEEEECTTCCEE
T ss_pred ceEEEEECCEEEEecCCCEEEECCCCcEE
Confidence 56789999999999999999998776643
No 176
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=35.26 E-value=36 Score=23.90 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=38.5
Q ss_pred EEeecCCCceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccc-cCCceeecCCCEEEE
Q psy17313 105 YFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQ-QGRAYTVEDGDIIFF 183 (197)
Q Consensus 105 tffT~g~~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~-eGkdYivqDGDIi~f 183 (197)
.++..+.-.+.-|+++.|...+ -..|..-..-|+--+ -.+.+.. .|+.|.++.||++.|
T Consensus 32 ~~~~~~~~~~~~~~~~pg~~~~---~H~H~~~~e~~~Vl~-----------------G~~~~~~~~~~~~~l~~Gd~~~i 91 (125)
T 3h8u_A 32 VVLETNDSVVVVWHAHPGQEIA---SHVHPHGQDTWTVIS-----------------GEAEYHQGNGIVTHLKAGDIAIA 91 (125)
T ss_dssp EEEECSSCEEEEEEECTTCEEC---CC-CTTCEEEEEEEE-----------------CEEEEECSTTCEEEEETTEEEEE
T ss_pred EEEcCCCEEEEEEEECCCCcCC---cccCCCCeEEEEEEE-----------------eEEEEEECCCeEEEeCCCCEEEE
Confidence 3444444566678888887654 345653223321111 1234556 789999999999988
Q ss_pred EEccC
Q psy17313 184 KFNAG 188 (197)
Q Consensus 184 ~fn~~ 188 (197)
--+++
T Consensus 92 ~~~~~ 96 (125)
T 3h8u_A 92 KPGQV 96 (125)
T ss_dssp CTTCC
T ss_pred CCCCE
Confidence 65554
No 177
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=35.16 E-value=10 Score=26.86 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhC-CcchHHHHHH--HHHhhcCC
Q psy17313 72 MPDDERQRYLDEQK-ATSVLDKIIT--QGYKSLQL 103 (197)
Q Consensus 72 l~~ee~~~fl~~~g-~~sgl~~li~--~~y~lL~L 103 (197)
|++||++++|+.|+ .++.|.++.. -+-.-+|+
T Consensus 15 Ls~eEk~~lL~~y~i~~~qLPrI~~~DPvar~~G~ 49 (78)
T 1hmj_A 15 VPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGA 49 (78)
T ss_pred CCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCC
Confidence 68999999999999 7888887652 33444444
No 178
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=35.05 E-value=13 Score=26.59 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=21.2
Q ss_pred cCcccccCCc--eeecCCCEEEEEEccC
Q psy17313 163 AGKYRQQGRA--YTVEDGDIIFFKFNAG 188 (197)
Q Consensus 163 ~Gk~r~eGkd--YivqDGDIi~f~fn~~ 188 (197)
.+.++..|+. |.++.||.+.|--+++
T Consensus 63 ~~~l~~~~~~~~~~l~~Gd~i~ipa~~~ 90 (112)
T 2opk_A 63 SAGIECEGDTAPRVMRPGDWLHVPAHCR 90 (112)
T ss_dssp CEEEEETTCSSCEEECTTEEEEECTTCC
T ss_pred eEEEEECCEEEEEEECCCCEEEECCCCc
Confidence 3467888999 9999999999976554
No 179
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=34.62 E-value=12 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=21.2
Q ss_pred cCcccccCCceeecCCCEEEEEEccC
Q psy17313 163 AGKYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 163 ~Gk~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
.|.+.+.|+.|.++.||++.|.-+++
T Consensus 64 ~~~~~i~~~~~~l~~Gd~~~i~~~~~ 89 (128)
T 4i4a_A 64 NAIIRINDEDFPVTKGDLIIIPLDSE 89 (128)
T ss_dssp EEEEEETTEEEEEETTCEEEECTTCC
T ss_pred EEEEEECCEEEEECCCcEEEECCCCc
Confidence 45677899999999999999866554
No 180
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=34.58 E-value=13 Score=27.12 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=21.9
Q ss_pred HcCcccccCCceeecCCCEEEEEEccC
Q psy17313 162 AAGKYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 162 ~~Gk~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
-.|.+...|+.|.++.||++.|.=+++
T Consensus 47 G~~~~~i~~~~~~l~~Gd~~~i~p~~~ 73 (164)
T 2arc_A 47 GQGVVKNQGREFVCRPGDILLFPPGEI 73 (164)
T ss_dssp ECEEEEETTEEEEECTTCEEEECTTCC
T ss_pred eEEEEEECCEEEEecCCeEEEEcCCCC
Confidence 446778899999999999998875543
No 181
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=34.43 E-value=19 Score=26.55 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.0
Q ss_pred ccccCCceeecCCCEEEEE
Q psy17313 166 YRQQGRAYTVEDGDIIFFK 184 (197)
Q Consensus 166 ~r~eGkdYivqDGDIi~f~ 184 (197)
++.-||.|.|+.||++.+.
T Consensus 5 i~~gGkQykV~~Gd~i~ve 23 (101)
T 3v2d_V 5 VKTGGKQYRVEPGLKLRVE 23 (101)
T ss_dssp EEETTEEEEECTTCEEEES
T ss_pred EEeCCEEEEEeCCCEEEEC
Confidence 4567999999999999873
No 182
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=34.41 E-value=31 Score=30.40 Aligned_cols=55 Identities=7% Similarity=0.090 Sum_probs=32.2
Q ss_pred cccCceEEEEeCCCccccccc----cccHHHHHHHHhhcC--C-CCeEEEechhhchhhcCC
Q psy17313 18 LTAKTQIYLVNLSAKDYIKKK----NKWLPKIKEWVDAND--P-GATIIPFSGVFEHQLVDM 72 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~d~~~~~----~~~~~~l~~~~~~~~--~-~~~vv~~sa~~E~el~~l 72 (197)
+-.+|+|+++|+.|..-.+.. +...+++++++...+ + +.+++++||.--.-+.++
T Consensus 142 ~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 142 MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 345689999999764210000 123455666665542 1 267999999865555544
No 183
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=34.27 E-value=35 Score=25.81 Aligned_cols=13 Identities=8% Similarity=0.023 Sum_probs=11.1
Q ss_pred cCceEEEEeCCCc
Q psy17313 20 AKTQIYLVNLSAK 32 (197)
Q Consensus 20 ~KP~iyv~Nv~e~ 32 (197)
..|+++|+|+.|.
T Consensus 115 ~~piilv~nK~Dl 127 (214)
T 2fh5_B 115 SPSLLIACNKQDI 127 (214)
T ss_dssp CCEEEEEEECTTS
T ss_pred CCCEEEEEECCCC
Confidence 5899999999764
No 184
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=34.04 E-value=13 Score=25.99 Aligned_cols=26 Identities=4% Similarity=0.003 Sum_probs=21.2
Q ss_pred CcccccCCceeecCCCEEEEEEccCC
Q psy17313 164 GKYRQQGRAYTVEDGDIIFFKFNAGA 189 (197)
Q Consensus 164 Gk~r~eGkdYivqDGDIi~f~fn~~~ 189 (197)
+.+...|+.|.++.||.+.|--+++=
T Consensus 69 ~~~~i~~~~~~l~~Gd~i~i~~~~~H 94 (114)
T 2ozj_A 69 AVITFDDQKIDLVPEDVLMVPAHKIH 94 (114)
T ss_dssp EEEEETTEEEEECTTCEEEECTTCCB
T ss_pred EEEEECCEEEEecCCCEEEECCCCcE
Confidence 45677899999999999998766653
No 185
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=33.77 E-value=16 Score=25.30 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=19.4
Q ss_pred HHHcCcccccCC----ceeecCCCEEEEEE
Q psy17313 160 CRAAGKYRQQGR----AYTVEDGDIIFFKF 185 (197)
Q Consensus 160 ak~~Gk~r~eGk----dYivqDGDIi~f~f 185 (197)
....|.+.+.|+ .|.|+.||+|.|.+
T Consensus 22 li~~G~V~VNg~~~~~~~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 22 MCNVGAVWLNGSCAKASKEVKAGDTISLHY 51 (92)
T ss_dssp HHHHTCCEETTEECCTTCBCCTTCEEEECC
T ss_pred HHHCCcEEECCEEcCCCCCcCCCCEEEEEe
Confidence 344566776664 78999999998865
No 186
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=39.29 E-value=9.1 Score=29.10 Aligned_cols=13 Identities=8% Similarity=-0.141 Sum_probs=11.2
Q ss_pred cCceEEEEeCCCc
Q psy17313 20 AKTQIYLVNLSAK 32 (197)
Q Consensus 20 ~KP~iyv~Nv~e~ 32 (197)
.+|+++|+|+.|.
T Consensus 134 ~~piilv~NK~Dl 146 (204)
T 3th5_A 134 NTPIILVGTKLDL 146 (204)
Confidence 6899999999764
No 187
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=32.49 E-value=13 Score=33.44 Aligned_cols=41 Identities=12% Similarity=-0.072 Sum_probs=26.2
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhhc
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 66 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E 66 (197)
.+|+|+|+|+.|..- ....+..+++.+.. +.+++++||+-.
T Consensus 140 ~~piIvV~NK~Dl~~----~~~~~~~~~l~~~~--g~~v~~vSAktg 180 (423)
T 3qq5_A 140 EIPFVVVVNKIDVLG----EKAEELKGLYESRY--EAKVLLVSALQK 180 (423)
T ss_dssp TCCEEEECCCCTTTT----CCCTHHHHHSSCCT--TCCCCCCSSCCT
T ss_pred CCCEEEEEeCcCCCC----ccHHHHHHHHHHHc--CCCEEEEECCCC
Confidence 689999999976421 11223444554444 567899998753
No 188
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=32.22 E-value=17 Score=24.31 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=19.0
Q ss_pred CcccccCCceeecCCCEEEEEEcc
Q psy17313 164 GKYRQQGRAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 164 Gk~r~eGkdYivqDGDIi~f~fn~ 187 (197)
+.+...|+.|.++.||++.|--++
T Consensus 61 ~~~~~~~~~~~l~~Gd~~~ip~~~ 84 (102)
T 3d82_A 61 LQIAFRDQNITLQAGEMYVIPKGV 84 (102)
T ss_dssp EEEECSSCEEEEETTEEEEECTTC
T ss_pred EEEEECCEEEEEcCCCEEEECCCC
Confidence 346778999999999998875444
No 189
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=31.44 E-value=36 Score=22.02 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=16.0
Q ss_pred cCCceeecCCCEEEEEEccCC
Q psy17313 169 QGRAYTVEDGDIIFFKFNAGA 189 (197)
Q Consensus 169 eGkdYivqDGDIi~f~fn~~~ 189 (197)
...++.++|||.|.|.--++.
T Consensus 43 ~~~~~~L~dgD~v~i~~~V~G 63 (64)
T 2cu3_A 43 EVPDRPLRDGDVVEVVALMQG 63 (64)
T ss_dssp GCCCCCCCTTCEEEEEECCCC
T ss_pred ccCCcCCCCCCEEEEEeeccc
Confidence 345689999999998765543
No 190
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=31.42 E-value=36 Score=31.62 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=29.8
Q ss_pred ccccCceEEEEeCCCcccccc--ccccHHHHHHHH-hhcC---CCCeEEEechhhchhhcCC
Q psy17313 17 LLTAKTQIYLVNLSAKDYIKK--KNKWLPKIKEWV-DAND---PGATIIPFSGVFEHQLVDM 72 (197)
Q Consensus 17 lLT~KP~iyv~Nv~e~d~~~~--~~~~~~~l~~~~-~~~~---~~~~vv~~sa~~E~el~~l 72 (197)
.+-.+|+|+|+|+.|..-.+. -....+.+.+++ ...+ .+.++|++||.--.-+.++
T Consensus 312 ~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~ 373 (592)
T 3mca_A 312 ALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQK 373 (592)
T ss_dssp HSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSC
T ss_pred HcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccc
Confidence 344445999999976321000 011234455555 3321 1247999999866555543
No 191
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=31.07 E-value=14 Score=30.22 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=23.2
Q ss_pred HcCcccccCCceeecCCCEEEEEEccCCC
Q psy17313 162 AAGKYRQQGRAYTVEDGDIIFFKFNAGAG 190 (197)
Q Consensus 162 ~~Gk~r~eGkdYivqDGDIi~f~fn~~~~ 190 (197)
-+|.++..|+.|.|+.||.++|.-+.+-+
T Consensus 195 G~~~~~~~~~~~~l~~GD~~~~~~~~pH~ 223 (246)
T 1sfn_A 195 GEGLYKLEENYYPVTAGDIIWMGAHCPQW 223 (246)
T ss_dssp CEEEEEETTEEEEEETTCEEEECTTCCEE
T ss_pred CEEEEEECCEEEEcCCCCEEEECCCCCEE
Confidence 34567789999999999999998766543
No 192
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=30.70 E-value=20 Score=25.32 Aligned_cols=16 Identities=50% Similarity=0.864 Sum_probs=13.9
Q ss_pred cCCceeecCCCEEEEE
Q psy17313 169 QGRAYTVEDGDIIFFK 184 (197)
Q Consensus 169 eGkdYivqDGDIi~f~ 184 (197)
.|.|+.++|||.|-|-
T Consensus 78 ~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 78 GEKDYILEDGDIISFT 93 (99)
T ss_dssp TGGGCBCCTTCEEEEE
T ss_pred CCCCcCcCCCCEEEEE
Confidence 4789999999999884
No 193
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=30.61 E-value=46 Score=31.08 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=34.4
Q ss_pred hhcccccccCceEEEEeCCCcccccc--ccccHHHHHHHHhhcC---CCCeEEEechhhchhhcCCC
Q psy17313 12 LNKLNLLTAKTQIYLVNLSAKDYIKK--KNKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMP 73 (197)
Q Consensus 12 i~~~~lLT~KP~iyv~Nv~e~d~~~~--~~~~~~~l~~~~~~~~---~~~~vv~~sa~~E~el~~l~ 73 (197)
+..+..+..+|+|+|+|+.|..-.+. -+...+.+..++...+ .+.+++|+||.--.-+.+|+
T Consensus 297 l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 297 MLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 33334455678999999976421000 0112334444443321 13589999998766666653
No 194
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=29.43 E-value=1.1e+02 Score=24.40 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=23.0
Q ss_pred cCceEEEEeCCCccccccccccH-----HHHHHHHhhcCCCCeEEEechh
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWL-----PKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~-----~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
.+|+|++.|++|..-.. -..++ +.++.++++. +..++++++.
T Consensus 139 ~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~--g~~~~~~~~~ 185 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAEC--GGRVCAFDNR 185 (247)
T ss_dssp GGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHT--TTCEEECCTT
T ss_pred ccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHc--CCeEEEEeCC
Confidence 58999999997532100 11222 2355555554 3456667644
No 195
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=29.42 E-value=34 Score=23.13 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=15.3
Q ss_pred cCCceeecCCCEEEEEEcc
Q psy17313 169 QGRAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 169 eGkdYivqDGDIi~f~fn~ 187 (197)
.+.++.++|||.|.|---+
T Consensus 69 ~~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 69 KGLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp CSSSCBCCTTCEEEEECCT
T ss_pred CCCCcCCCCCCEEEEeCCC
Confidence 5789999999999885433
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=29.08 E-value=77 Score=27.05 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=10.8
Q ss_pred cCceEEEEeCCCc
Q psy17313 20 AKTQIYLVNLSAK 32 (197)
Q Consensus 20 ~KP~iyv~Nv~e~ 32 (197)
.+|.++|+|+.|.
T Consensus 212 ~~~~ivVlNK~Dl 224 (349)
T 2www_A 212 EMADLVAVTKSDG 224 (349)
T ss_dssp CSCSEEEECCCSG
T ss_pred hcCCEEEEeeecC
Confidence 4799999999764
No 197
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=29.03 E-value=55 Score=28.70 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=23.8
Q ss_pred ccCceEEEEeCCCccccccccccHHHH-HHHHhhcCCCC-eEEEechhhch
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKI-KEWVDANDPGA-TIIPFSGVFEH 67 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l-~~~~~~~~~~~-~vv~~sa~~E~ 67 (197)
..||+++|+|+.|.. . .....+ .++.. . +. +++++||.--.
T Consensus 109 ~~~p~ilv~NK~D~~--~---~~~~~~~~~~~~-l--g~~~~~~iSA~~g~ 151 (439)
T 1mky_A 109 STVDTILVANKAENL--R---EFEREVKPELYS-L--GFGEPIPVSAEHNI 151 (439)
T ss_dssp HTCCEEEEEESCCSH--H---HHHHHTHHHHGG-G--SSCSCEECBTTTTB
T ss_pred cCCCEEEEEeCCCCc--c---ccHHHHHHHHHh-c--CCCCEEEEeccCCC
Confidence 579999999997642 1 101222 33332 2 23 57899987543
No 198
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=29.03 E-value=16 Score=24.88 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=19.8
Q ss_pred CcccccCCceeecCCCEEEEEEccC
Q psy17313 164 GKYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 164 Gk~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
+.++..|+.|.++.||++.|.-+++
T Consensus 55 ~~~~~~~~~~~l~~Gd~~~i~~~~~ 79 (113)
T 2gu9_A 55 GEAIVDGHTQALQAGSLIAIERGQA 79 (113)
T ss_dssp EEEEETTEEEEECTTEEEEECTTCC
T ss_pred EEEEECCEEEEeCCCCEEEECCCCc
Confidence 4567789999999999998865543
No 199
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=28.89 E-value=25 Score=29.36 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.2
Q ss_pred HcCcccccCCceeecCCCEEEEEEccCCC
Q psy17313 162 AAGKYRQQGRAYTVEDGDIIFFKFNAGAG 190 (197)
Q Consensus 162 ~~Gk~r~eGkdYivqDGDIi~f~fn~~~~ 190 (197)
-+|.++..|+.|.|+.||++.+.-+.+-+
T Consensus 221 G~~~~~~~~~~~~v~~GD~~~~~~~~~h~ 249 (278)
T 1sq4_A 221 GKAVYRLNQDWVEVEAGDFMWLRAFCPQA 249 (278)
T ss_dssp CEEEEEETTEEEEEETTCEEEEEESCCEE
T ss_pred CEEEEEECCEEEEeCCCCEEEECCCCCEE
Confidence 34567889999999999999999877654
No 200
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=28.68 E-value=22 Score=25.90 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.0
Q ss_pred CcccccCCceeecCCCEEEEEEccC
Q psy17313 164 GKYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 164 Gk~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
+.+...|+.|.++.||+++|--+++
T Consensus 70 ~~~~~~g~~~~l~~GD~v~ip~g~~ 94 (119)
T 3lwc_A 70 LSVSTDGETVTAGPGEIVYMPKGET 94 (119)
T ss_dssp EEEEETTEEEEECTTCEEEECTTCE
T ss_pred EEEEECCEEEEECCCCEEEECCCCE
Confidence 4567789999999999999865543
No 201
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=28.60 E-value=28 Score=27.78 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred ccCCceeecCCCEEEEEEccCCCCC
Q psy17313 168 QQGRAYTVEDGDIIFFKFNAGAGLN 192 (197)
Q Consensus 168 ~eGkdYivqDGDIi~f~fn~~~~~~ 192 (197)
.+|--|.++.||.|++.||.+...+
T Consensus 124 ~lGGvfELh~GDsIflnft~~~qV~ 148 (166)
T 2r32_A 124 NVGGTYELHVGDTIDLIFNSEHQVL 148 (166)
T ss_dssp ECCEEEEECTTCEEEEEESSGGGBC
T ss_pred ecCeEEEecCCCEEEEEeCCHHHcc
Confidence 3889999999999999999887654
No 202
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=28.25 E-value=36 Score=29.91 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=12.6
Q ss_pred cccCceEEEEeCCCc
Q psy17313 18 LTAKTQIYLVNLSAK 32 (197)
Q Consensus 18 LT~KP~iyv~Nv~e~ 32 (197)
...+|+++|+|+.|.
T Consensus 109 ~~~~pvilv~NK~D~ 123 (436)
T 2hjg_A 109 RTKKPVVLAVNKLDN 123 (436)
T ss_dssp TCCSCEEEEEECCCC
T ss_pred HcCCCEEEEEECccC
Confidence 367999999999874
No 203
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=27.84 E-value=17 Score=25.90 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=39.3
Q ss_pred EeecCCCceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEE
Q psy17313 106 FFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKF 185 (197)
Q Consensus 106 ffT~g~~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~f 185 (197)
.+....-++.-++++.|...+. .-|... =|++.. +-.+.+...|+.|.++.||.+.|--
T Consensus 30 l~~~~~~~v~~~~l~~G~~~~~---H~H~~~--e~~~Vl----------------~G~~~~~i~~~~~~l~~Gd~i~ip~ 88 (114)
T 3fjs_A 30 LFKEHRLEVMRMVLPAGKQVGS---HSVAGP--STIQCL----------------EGEVEIGVDGAQRRLHQGDLLYLGA 88 (114)
T ss_dssp EEEETTEEEEEEEECTTCEEEE---ECCSSC--EEEEEE----------------ESCEEEEETTEEEEECTTEEEEECT
T ss_pred EEeCCCEEEEEEEECCCCccCc---eeCCCc--EEEEEE----------------ECEEEEEECCEEEEECCCCEEEECC
Confidence 3444444666788888876542 344432 233322 1234567889999999999999876
Q ss_pred ccC
Q psy17313 186 NAG 188 (197)
Q Consensus 186 n~~ 188 (197)
+++
T Consensus 89 ~~~ 91 (114)
T 3fjs_A 89 GAA 91 (114)
T ss_dssp TCC
T ss_pred CCc
Confidence 654
No 204
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=27.78 E-value=26 Score=26.83 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=21.2
Q ss_pred CcccccCCceeecCCCEEEEEEccCC
Q psy17313 164 GKYRQQGRAYTVEDGDIIFFKFNAGA 189 (197)
Q Consensus 164 Gk~r~eGkdYivqDGDIi~f~fn~~~ 189 (197)
+.+...|+.|.++.||.+.|.-+++-
T Consensus 137 ~~~~~~~~~~~l~~GD~i~i~~~~~H 162 (192)
T 1y9q_A 137 MKVFFDEQWHELQQGEHIRFFSDQPH 162 (192)
T ss_dssp EEEEETTEEEEECTTCEEEEECSSSE
T ss_pred EEEEECCEEEEeCCCCEEEEcCCCCe
Confidence 34677899999999999999876653
No 205
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=27.76 E-value=61 Score=23.77 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=44.6
Q ss_pred CCceeeeEecCCCChhhhhhhhcccc---ccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEEcc
Q psy17313 111 QDEVKAWTIQKGTKAPQAAGRIHTDF---EKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 111 ~~EvRAWti~~GstA~~aAg~IHsDf---ekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~fn~ 187 (197)
|+..|.|+-..|.+---.-+.|-..| +.|=+++.|.+ + ..|+.-..-++-.++.||+|++..-|
T Consensus 15 PkG~~vSip~pGi~lfafh~~iN~~~~~~~~g~~~~dit~------------~-~~GrW~~~d~~~~lk~GD~i~Yw~~V 81 (106)
T 3aqy_A 15 PKGLRVSIPDDGFSLFAFHGKLNEEMDGLEAGHWARDITK------------P-KEGRWTFRDRNVKLKLGDKIYFWTYV 81 (106)
T ss_dssp SSCEEEEEECSSCSEEEEEEEESSCCCSSCCCSEEEEECC------------C-BTTEEEEEECSCCCCTTCEEEEEEEE
T ss_pred CCcEEEEEeCCCcEEEEEEEEecCCCCccccceeeeeeeE------------e-cCCEEEEECCceEeCCCCEEEEEEEE
Confidence 46678887766777776666665544 33555665554 2 24777777788899999999988765
No 206
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=27.70 E-value=43 Score=29.84 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=30.4
Q ss_pred ccCceEEEEeCCCcc-cccc-ccccHHHHHHHHhhcCC---CCeEEEechhhchhhcCC
Q psy17313 19 TAKTQIYLVNLSAKD-YIKK-KNKWLPKIKEWVDANDP---GATIIPFSGVFEHQLVDM 72 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d-~~~~-~~~~~~~l~~~~~~~~~---~~~vv~~sa~~E~el~~l 72 (197)
-.+|+|+|+|+.|.. +... -+...++++++++..+- +.+++|+||.--.-+.++
T Consensus 144 ~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 345699999997642 1000 01233445555554321 257999999876656544
No 207
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=27.51 E-value=24 Score=23.92 Aligned_cols=25 Identities=8% Similarity=0.260 Sum_probs=19.7
Q ss_pred Cccccc-CCceeecCCCEEEEEEccC
Q psy17313 164 GKYRQQ-GRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 164 Gk~r~e-GkdYivqDGDIi~f~fn~~ 188 (197)
+.+... |+.|.++.||++.|--+++
T Consensus 66 ~~~~~~~~~~~~l~~Gd~~~ip~~~~ 91 (110)
T 2q30_A 66 GEFVGDGDAVIPAPRGAVLVAPISTP 91 (110)
T ss_dssp EEEECGGGCEEEECTTEEEEEETTSC
T ss_pred EEEEeCCCEEEEECCCCEEEeCCCCc
Confidence 345666 7999999999999876654
No 208
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=27.36 E-value=2.2 Score=37.98 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=26.4
Q ss_pred eeeEecCC----CChhh---hhhhhccccccCeeEEEEecchh
Q psy17313 115 KAWTIQKG----TKAPQ---AAGRIHTDFEKGFIMAEVMHFDD 150 (197)
Q Consensus 115 RAWti~~G----stA~~---aAg~IHsDfekgFI~AeVi~~~D 150 (197)
|=+|-.+| ||.|. +-+.=|+||+++|+++++.+|.+
T Consensus 302 ~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ih~d~~~~F~~ 344 (376)
T 4a9a_A 302 RIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRN 344 (376)
T ss_dssp EEEECCSSSCCCSSSCEEEBTTBCBHHHHHHHHCGGGGGGEEE
T ss_pred EEEeCCCCCcCCCCccccccCCCCcHHHHHHHHHHHHHHhhhH
Confidence 35666555 34332 34477999999999999999987
No 209
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=27.25 E-value=11 Score=26.68 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHhC-CcchHHHHH
Q psy17313 72 MPDDERQRYLDEQK-ATSVLDKII 94 (197)
Q Consensus 72 l~~ee~~~fl~~~g-~~sgl~~li 94 (197)
|++||++++|+.|+ .++.|+++.
T Consensus 17 Ls~eEk~~lL~~y~i~~~qLP~I~ 40 (77)
T 1eik_A 17 LNESEAKRVLKELDAHPEQLPKIK 40 (77)
T ss_dssp ECHHHHHHHHHHTTCCTTTSCCCB
T ss_pred cCHHHHHHHHHHcCCCHHHCCeee
Confidence 57899999999999 777777754
No 210
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=27.13 E-value=20 Score=23.83 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=11.6
Q ss_pred CceeecCCCEEEEE
Q psy17313 171 RAYTVEDGDIIFFK 184 (197)
Q Consensus 171 kdYivqDGDIi~f~ 184 (197)
.+|-|+|||+|++.
T Consensus 58 ~~l~medgD~Idv~ 71 (72)
T 1wm3_A 58 AQLEMEDEDTIDVF 71 (72)
T ss_dssp TTTTCCTTEEEEEE
T ss_pred HHcCCCCCCEEEEE
Confidence 67889999999864
No 211
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=27.08 E-value=24 Score=25.06 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=15.0
Q ss_pred cCCceeecCCCEEEEEEc
Q psy17313 169 QGRAYTVEDGDIIFFKFN 186 (197)
Q Consensus 169 eGkdYivqDGDIi~f~fn 186 (197)
.+.++.++|||.|.|---
T Consensus 78 ~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 78 EGLETLLKDSDEIGILPP 95 (99)
T ss_dssp TSTTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCCCEEEEECC
Confidence 588999999999988543
No 212
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=26.95 E-value=25 Score=24.86 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=14.5
Q ss_pred CceeecCCCEEEEEEcc
Q psy17313 171 RAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 171 kdYivqDGDIi~f~fn~ 187 (197)
.+|-|+|||+|++...-
T Consensus 64 ~dl~medgD~Idv~~~~ 80 (94)
T 2io1_B 64 AQLEMEDEDTIDVFQQQ 80 (94)
T ss_dssp TTTTCCTTCEEEEEECC
T ss_pred HHcCCCCCCEEEEEEec
Confidence 67999999999998753
No 213
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=26.72 E-value=34 Score=23.17 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=16.6
Q ss_pred ceeecCCCEEEEEEccCCCC
Q psy17313 172 AYTVEDGDIIFFKFNAGAGL 191 (197)
Q Consensus 172 dYivqDGDIi~f~fn~~~~~ 191 (197)
++.++|||.|.|.--++...
T Consensus 47 ~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 47 ETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp TCBCCTTCEEEEECCCCCCC
T ss_pred cccCCCCCEEEEEccccCCc
Confidence 68999999999988777653
No 214
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=26.57 E-value=54 Score=28.39 Aligned_cols=45 Identities=7% Similarity=0.081 Sum_probs=26.7
Q ss_pred cCc-eEEEEeCCCccccccccc----cHHHHHHHHhhcC---CCCeEEEechhhch
Q psy17313 20 AKT-QIYLVNLSAKDYIKKKNK----WLPKIKEWVDAND---PGATIIPFSGVFEH 67 (197)
Q Consensus 20 ~KP-~iyv~Nv~e~d~~~~~~~----~~~~l~~~~~~~~---~~~~vv~~sa~~E~ 67 (197)
..| +++++|+.|.. . ... ..+++++++++.+ .+.+++++||.-..
T Consensus 127 ~ip~iivviNK~Dl~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~ 179 (405)
T 2c78_A 127 GVPYIVVFMNKVDMV--D-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLAL 179 (405)
T ss_dssp TCCCEEEEEECGGGC--C-CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHH
T ss_pred CCCEEEEEEECcccc--C-cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhh
Confidence 357 88999997532 1 111 2234556665542 13679999987543
No 215
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=26.51 E-value=32 Score=30.75 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=29.6
Q ss_pred HHHHhhcccccccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 8 RIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 8 E~~~i~~~~lLT~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
+..+++.+. ...|+|+|+|+.|.--...-..+.+.+.+++..+ +.+++.+||.
T Consensus 157 d~~~lk~L~--~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~--~i~~~~~sa~ 209 (418)
T 2qag_C 157 DIEFMKRLH--EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH--KIKIYEFPET 209 (418)
T ss_dssp HHHHHHHHT--TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHH--TCCCCCCC--
T ss_pred HHHHHHHHh--ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHc--CCeEEeCCCC
Confidence 445666554 4689999999976421100112335566666655 4566666753
No 216
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=26.49 E-value=28 Score=24.25 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=20.0
Q ss_pred CcccccCCce-eecCCCEEEEEEccC
Q psy17313 164 GKYRQQGRAY-TVEDGDIIFFKFNAG 188 (197)
Q Consensus 164 Gk~r~eGkdY-ivqDGDIi~f~fn~~ 188 (197)
+.+...|+.| .++.||++.|--+++
T Consensus 58 ~~~~i~~~~~~~l~~Gd~i~ip~~~~ 83 (117)
T 2b8m_A 58 MTLTLEDQEPHNYKEGNIVYVPFNVK 83 (117)
T ss_dssp EEEEETTSCCEEEETTCEEEECTTCE
T ss_pred EEEEECCEEEEEeCCCCEEEECCCCc
Confidence 4567789999 999999998865543
No 217
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=26.49 E-value=15 Score=26.94 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=16.0
Q ss_pred ccccCCceeecCCCEEEEE
Q psy17313 166 YRQQGRAYTVEDGDIIFFK 184 (197)
Q Consensus 166 ~r~eGkdYivqDGDIi~f~ 184 (197)
++.-||.|.|+.||++.+.
T Consensus 5 i~~gGkQykV~~Gd~i~ve 23 (100)
T 2zjr_O 5 IQTGGKQYRVSEGDVIRVE 23 (100)
T ss_dssp CCSSCCSCCSCCEEEEECC
T ss_pred EEECCEEEEEeCCCEEEEc
Confidence 5667999999999998864
No 218
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=26.43 E-value=1e+02 Score=22.54 Aligned_cols=61 Identities=21% Similarity=0.216 Sum_probs=36.5
Q ss_pred eecCCCceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCc------eeecCCCE
Q psy17313 107 FTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRA------YTVEDGDI 180 (197)
Q Consensus 107 fT~g~~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkd------YivqDGDI 180 (197)
++...-++.-++++.|...+ ...|.+.+.-|+--+ -.+.+.+.|+. |.++.||+
T Consensus 38 ~~~~~~~~~~~~l~pg~~~~---~H~H~~~~E~~~Vl~-----------------G~~~~~i~~~~~~~~~~~~l~~Gd~ 97 (148)
T 2oa2_A 38 WTGDHLQVTLMSIQVGEDIG---LEIHPHLDQFLRVEE-----------------GRGLVQMGHRQDNLHFQEEVFDDYA 97 (148)
T ss_dssp EECSSCEEEEEEECTTCBCC---CBCCTTCEEEEEEEE-----------------SEEEEEEESBTTBCCEEEEEETTCE
T ss_pred EcCCceEEEEEEECCCCccC---ceECCCCcEEEEEEe-----------------CEEEEEECCccccceeeEEECCCCE
Confidence 34333455567788887543 345665433232211 23456677887 99999999
Q ss_pred EEEEEcc
Q psy17313 181 IFFKFNA 187 (197)
Q Consensus 181 i~f~fn~ 187 (197)
+.|--++
T Consensus 98 i~ip~g~ 104 (148)
T 2oa2_A 98 ILIPAGT 104 (148)
T ss_dssp EEECTTC
T ss_pred EEECCCC
Confidence 9886444
No 219
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=26.01 E-value=18 Score=25.71 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=19.1
Q ss_pred ccccc-CCceeecCCCEEEEEEccC
Q psy17313 165 KYRQQ-GRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 165 k~r~e-GkdYivqDGDIi~f~fn~~ 188 (197)
.++.. |+.|.++.||++.|.-+++
T Consensus 61 ~~~i~~g~~~~l~~GD~i~ip~g~~ 85 (101)
T 1o5u_A 61 EVTTEDGKKYVIEKGDLVTFPKGLR 85 (101)
T ss_dssp EEEETTCCEEEEETTCEEEECTTCE
T ss_pred EEEECCCCEEEECCCCEEEECCCCc
Confidence 45666 8999999999999865554
No 220
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=25.69 E-value=21 Score=24.30 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=11.1
Q ss_pred CceeecCCCEEEEE
Q psy17313 171 RAYTVEDGDIIFFK 184 (197)
Q Consensus 171 kdYivqDGDIi~f~ 184 (197)
.+|-|+|||+|++.
T Consensus 65 ~~l~medgD~Idv~ 78 (79)
T 3a4r_A 65 ADLGLESGDLIEVW 78 (79)
T ss_dssp HHHTCCTTCEEEEE
T ss_pred HHcCCCCCCEEEEe
Confidence 46779999998864
No 221
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=25.68 E-value=21 Score=24.66 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=19.6
Q ss_pred CcccccCCceeecCCCEEEEEEccC
Q psy17313 164 GKYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 164 Gk~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
+.+...|+.|.++.||++.|--+++
T Consensus 71 ~~~~~~~~~~~l~~Gd~~~ip~~~~ 95 (115)
T 1yhf_A 71 AEITIDQETYRVAEGQTIVMPAGIP 95 (115)
T ss_dssp EEEEETTEEEEEETTCEEEECTTSC
T ss_pred EEEEECCEEEEECCCCEEEECCCCC
Confidence 4566789999999999998765543
No 222
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A*
Probab=25.63 E-value=29 Score=30.24 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=34.8
Q ss_pred ecCCCChhhhhhhhcccccc----------CeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEEcc
Q psy17313 119 IQKGTKAPQAAGRIHTDFEK----------GFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 119 i~~GstA~~aAg~IHsDfek----------gFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~fn~ 187 (197)
|+.|.|-.|.|..+|.-+.+ ||= -.+|.++-+-.|.-. -.-.+.++++||||.|-+.+
T Consensus 66 ikpG~t~~el~~~~e~~i~~~~~~~~~~g~~FP--~ciSvN~~v~Hg~P~---------~~~~~~~L~~GDiV~ID~G~ 133 (358)
T 3fm3_A 66 VRPGITLLEIVRSIEDSTRTLLKGERNNGIGFP--AGMSMNSCAAHYTVN---------PGEQDIVLKEDDVLKIDFGT 133 (358)
T ss_dssp CCTTCBHHHHHHHHHHHHHHHTTTSGGGGEEEE--EEEEETTEEECCCCC---------TTCCCCBCCTTCEEEEEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCcccCCCCC--cEEeeCCEEEecCCC---------CCCCCeEecCCCEEEEEeeE
Confidence 47788888888877643321 342 234555543332210 01247899999999997754
No 223
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=25.57 E-value=65 Score=30.18 Aligned_cols=44 Identities=9% Similarity=0.016 Sum_probs=22.8
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechhh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVF 65 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~ 65 (197)
...|+|+++|+.|..-.+ .....+.+.+...- +..+++++||.-
T Consensus 122 ~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~--~~~~vi~vSAkt 165 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVGI--DATDAVRCSAKT 165 (599)
T ss_dssp TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTCC--CCTTCEEECTTT
T ss_pred CCCCEEEeeeccCccccc-HHHHHHHHHHHhCC--CcceEEEeeccc
Confidence 357999999997643110 11122333332211 123478889763
No 224
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=25.26 E-value=20 Score=29.60 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=22.4
Q ss_pred HcCcccccCCceeecCCCEEEEEEccC
Q psy17313 162 AAGKYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 162 ~~Gk~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
-.|.+++.|+.|.|+.||++.|.-+++
T Consensus 212 G~~~~~i~~~~~~l~~GD~i~i~~~~~ 238 (274)
T 1sef_A 212 GQGMYNLDNEWYPVEKGDYIFMSAYVP 238 (274)
T ss_dssp CEEEEEETTEEEEEETTCEEEECTTCC
T ss_pred CEEEEEECCEEEEECCCCEEEECCCCC
Confidence 345778899999999999999976654
No 225
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=25.23 E-value=25 Score=27.66 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=21.2
Q ss_pred HcCcccccCCceeecCCCEEEEEEcc
Q psy17313 162 AAGKYRQQGRAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 162 ~~Gk~r~eGkdYivqDGDIi~f~fn~ 187 (197)
-.|.+.+.|+.|.|+.||+|.|--++
T Consensus 77 G~g~v~idge~~~l~~GD~v~IPpg~ 102 (157)
T 4h7l_A 77 AHATIELNGQSYPLTKLLAISIPPLV 102 (157)
T ss_dssp TTCEEEETTEEEECCTTEEEEECTTC
T ss_pred cEEEEEECCEEEEeCCCCEEEECCCC
Confidence 44678889999999999999885443
No 226
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=24.78 E-value=33 Score=22.74 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=14.1
Q ss_pred cCCceeecCCCEEEEEE
Q psy17313 169 QGRAYTVEDGDIIFFKF 185 (197)
Q Consensus 169 eGkdYivqDGDIi~f~f 185 (197)
.+.++.++|||.|.|-=
T Consensus 60 v~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 60 VSFDHPLTDGDEVAFFP 76 (81)
T ss_dssp CCTTCBCCTTCEEEEEC
T ss_pred CCCCCCCCCCCEEEEeC
Confidence 45799999999998853
No 227
>4db5_A Tumor necrosis factor ligand superfamily member 1; gitrl, glucocorticoid-induced TNF receptor ligand, immune SY tnfrsf18; HET: B3P; 1.52A {Oryctolagus cuniculus} PDB: 4e4s_A 2r30_A 3b93_A 3b94_A 2q1m_A
Probab=24.24 E-value=34 Score=26.28 Aligned_cols=26 Identities=31% Similarity=0.609 Sum_probs=21.7
Q ss_pred ccccCCceeecCCCEEEEEEccCCCC
Q psy17313 166 YRQQGRAYTVEDGDIIFFKFNAGAGL 191 (197)
Q Consensus 166 ~r~eGkdYivqDGDIi~f~fn~~~~~ 191 (197)
+...|--|.++.||.|++.||.+...
T Consensus 81 ~q~lGGvfeL~~GD~Ifv~vn~~~qV 106 (125)
T 4db5_A 81 IQNLGGIYEFDAGDIIELRFNSDDQV 106 (125)
T ss_dssp CEEEEEEEEECTTCEEEEEESCGGGB
T ss_pred eeecccEEEecCCCEEEEEECChhhe
Confidence 34578889999999999999987654
No 228
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=24.08 E-value=52 Score=21.55 Aligned_cols=19 Identities=5% Similarity=0.020 Sum_probs=14.7
Q ss_pred cCCceeecCCCEEEEEEcc
Q psy17313 169 QGRAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 169 eGkdYivqDGDIi~f~fn~ 187 (197)
..+++.++|||.|.|---+
T Consensus 56 v~~~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 56 VQKSDFIQPNDTVALIPPV 74 (77)
T ss_dssp ECTTSEECTTCEEEEECSC
T ss_pred CCCCCCcCCCCEEEEECCC
Confidence 4568999999999885433
No 229
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=24.01 E-value=25 Score=24.18 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=18.7
Q ss_pred cccccC-CceeecCCCEEEEEEccC
Q psy17313 165 KYRQQG-RAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 165 k~r~eG-kdYivqDGDIi~f~fn~~ 188 (197)
.+...| +.|.++.||++.|.-+++
T Consensus 60 ~~~~~~~~~~~l~~Gd~~~ip~~~~ 84 (107)
T 2i45_A 60 AVDFADGGSMTIREGEMAVVPKSVS 84 (107)
T ss_dssp EEEETTSCEEEECTTEEEEECTTCC
T ss_pred EEEECCCcEEEECCCCEEEECCCCc
Confidence 356677 999999999998865543
No 230
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=23.76 E-value=33 Score=31.04 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=14.9
Q ss_pred CceeecCCCEEEEEEc
Q psy17313 171 RAYTVEDGDIIFFKFN 186 (197)
Q Consensus 171 kdYivqDGDIi~f~fn 186 (197)
.+|.++|||.|.|+|.
T Consensus 382 ~~y~~~~gd~I~f~~~ 397 (399)
T 2pmv_A 382 ADYIPFNHEHITANFT 397 (399)
T ss_dssp TTCCCCTTCEEEEEEE
T ss_pred hheecCCCCEEEEEEe
Confidence 7899999999999985
No 231
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=23.25 E-value=21 Score=25.26 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=35.9
Q ss_pred CceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEEcc
Q psy17313 112 DEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 187 (197)
Q Consensus 112 ~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~fn~ 187 (197)
-++.-++++.|...+. --.|...+--|+--+ -.+.+.+.|+.|.++.||++.|--++
T Consensus 26 ~~~~~~~~~pg~~~~~--~H~H~~~e~~~~vl~-----------------G~~~~~i~~~~~~l~~Gd~i~i~~~~ 82 (125)
T 3cew_A 26 AEVSINHLPAGAGVPF--VHSHKQNEEIYGILS-----------------GKGFITIDGEKIELQAGDWLRIAPDG 82 (125)
T ss_dssp CEEEEEEECTTCBCSS--EEEESSEEEEEEEEE-----------------EEEEEEETTEEEEEETTEEEEECTTC
T ss_pred cEEEEEEECCCCCCCC--CccCCCceEEEEEEe-----------------CEEEEEECCEEEEeCCCCEEEECCCC
Confidence 4555677777765431 245665555542211 22346778899999999999886544
No 232
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=23.19 E-value=27 Score=24.57 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=11.5
Q ss_pred CceeecCCCEEEE
Q psy17313 171 RAYTVEDGDIIFF 183 (197)
Q Consensus 171 kdYivqDGDIi~f 183 (197)
.||.|.|||++.+
T Consensus 68 ~d~~ItnGD~Lei 80 (81)
T 2bps_A 68 SDCGITNGDRLEI 80 (81)
T ss_dssp GGGTCCTTCEEEE
T ss_pred eeCCcCCCCEEEE
Confidence 5899999999986
No 233
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=23.14 E-value=33 Score=25.51 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=19.1
Q ss_pred CcccccCCceeecCCCEEEEEEc
Q psy17313 164 GKYRQQGRAYTVEDGDIIFFKFN 186 (197)
Q Consensus 164 Gk~r~eGkdYivqDGDIi~f~fn 186 (197)
+.+...|+.|.++.||++.|--+
T Consensus 79 ~~~~~~~~~~~l~~Gd~i~i~~~ 101 (162)
T 3l2h_A 79 GTLTMENDQYPIAPGDFVGFPCH 101 (162)
T ss_dssp EEEEETTEEEEECTTCEEEECTT
T ss_pred EEEEECCEEEEeCCCCEEEECCC
Confidence 45677899999999999988665
No 234
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=22.74 E-value=31 Score=26.35 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.4
Q ss_pred HcCcccccCCceeecCCCEEEEEEccC
Q psy17313 162 AAGKYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 162 ~~Gk~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
-.|.+.+.|+.|.|+.||++.|--+++
T Consensus 73 G~~~v~v~g~~~~l~~Gd~i~ip~~~~ 99 (156)
T 3kgz_A 73 GHGQCLVGETISDVAQGDLVFIPPMTW 99 (156)
T ss_dssp EEEEEEETTEEEEEETTCEEEECTTCC
T ss_pred CEEEEEECCEEEEeCCCCEEEECCCCc
Confidence 345678899999999999998865544
No 235
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=22.70 E-value=1.3e+02 Score=22.45 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=25.4
Q ss_pred ccCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEechh
Q psy17313 19 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGV 64 (197)
Q Consensus 19 T~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~ 64 (197)
...|++.|+|+.+..- .........+.++.+. +..++.+||.
T Consensus 109 ~~~~i~~v~nK~Dl~~--~~~~~~~~a~~l~~~~--~~~~~d~Sal 150 (199)
T 2f9l_A 109 SNIVIMLVGNKSDLRH--LRAVPTDEARAFAEKN--NLSFIETSAL 150 (199)
T ss_dssp TTCEEEEEEECTTCGG--GCCSCHHHHHHHHHHT--TCEEEECCTT
T ss_pred CCCeEEEEEECccccc--ccCcCHHHHHHHHHHc--CCeEEEEeCC
Confidence 3578999999975421 1223345566666554 5667777754
No 236
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=22.53 E-value=1.6e+02 Score=20.96 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=30.8
Q ss_pred ccCceEEEEeC-CCccccccccccHHHHHHHHhhcCCCCeEEEechhhchhhcCCCHHHHHHHHHHhC
Q psy17313 19 TAKTQIYLVNL-SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK 85 (197)
Q Consensus 19 T~KP~iyv~Nv-~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa~~E~el~~l~~ee~~~fl~~~g 85 (197)
..||+|+..-- +--......-+.+.++.+..... +..+|.+|.. +++..++|++.++
T Consensus 34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d--------~~~~~~~~~~~~~ 91 (163)
T 3gkn_A 34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA--GAKILGVSRD--------SVKSHDNFCAKQG 91 (163)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT--TCEEEEEESS--------CHHHHHHHHHHHC
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC--CCEEEEEeCC--------CHHHHHHHHHHhC
Confidence 46787766653 22222211122333433322333 5788988853 4566778888877
No 237
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=22.19 E-value=64 Score=24.02 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=13.9
Q ss_pred CceeecCCCEEE------EEEccC
Q psy17313 171 RAYTVEDGDIIF------FKFNAG 188 (197)
Q Consensus 171 kdYivqDGDIi~------f~fn~~ 188 (197)
..+.+++||+|. ||||-|
T Consensus 101 ~~~~L~~GD~I~lG~~~~FrFn~P 124 (124)
T 3fm8_A 101 SPIQLHHGDRILWGNNHFFRLNLP 124 (124)
T ss_dssp SCEEECTTCEEEETTTEEEEEECC
T ss_pred CcEECCCCCEEEECCCeEEEEECc
Confidence 568899999975 677754
No 238
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=22.10 E-value=29 Score=23.88 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=18.9
Q ss_pred cccccCCceeecCCCEEEEEEccC
Q psy17313 165 KYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 165 k~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
.+...|+.|.++.||++.|--+++
T Consensus 66 ~~~~~~~~~~l~~Gd~~~ip~~~~ 89 (116)
T 2pfw_A 66 HVNVDGVIKVLTAGDSFFVPPHVD 89 (116)
T ss_dssp EEEETTEEEEECTTCEEEECTTCC
T ss_pred EEEECCEEEEeCCCCEEEECcCCc
Confidence 456678999999999988865543
No 239
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=21.67 E-value=58 Score=22.28 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=15.6
Q ss_pred cCCceeecCCCEEEEEEccC
Q psy17313 169 QGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 169 eGkdYivqDGDIi~f~fn~~ 188 (197)
.|.++.++|||.|.|-=-++
T Consensus 72 ~~~~~~L~~gDeV~i~Ppv~ 91 (93)
T 3dwg_C 72 GGLATAIADGDSVTILPAVA 91 (93)
T ss_dssp TGGGCBCCTTCEEEEEECCT
T ss_pred CCCCcCCCCCCEEEEECCCC
Confidence 56799999999998864443
No 240
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=21.55 E-value=41 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=19.5
Q ss_pred cccccCCceeecCCCEEEEEEccC
Q psy17313 165 KYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 165 k~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
.+...|+.|.++.||.+.|.-+.+
T Consensus 87 ~l~~~g~~~~l~~GD~i~~p~g~~ 110 (133)
T 2pyt_A 87 HVRHEGETMIAKAGDVMFIPKGSS 110 (133)
T ss_dssp EEEETTEEEEEETTCEEEECTTCE
T ss_pred EEEECCEEEEECCCcEEEECCCCE
Confidence 466789999999999999875543
No 241
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=21.42 E-value=39 Score=30.68 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=15.0
Q ss_pred CceeecCCCEEEEEEc
Q psy17313 171 RAYTVEDGDIIFFKFN 186 (197)
Q Consensus 171 kdYivqDGDIi~f~fn 186 (197)
.+|.++|||.|.|+|.
T Consensus 397 ~~y~~~~ge~I~f~~~ 412 (414)
T 2bb6_A 397 ADYRPKDGETIELRLV 412 (414)
T ss_dssp TTCCCCTTCEEEEEEE
T ss_pred cceecCCCCEEEEEee
Confidence 7899999999999985
No 242
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=21.39 E-value=43 Score=23.41 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=13.9
Q ss_pred cCCceeecCCCEEEEEE
Q psy17313 169 QGRAYTVEDGDIIFFKF 185 (197)
Q Consensus 169 eGkdYivqDGDIi~f~f 185 (197)
...++.++|||.|.|.-
T Consensus 77 v~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 77 VSWDEELKDGDVVGVFP 93 (98)
T ss_dssp CCTTCBCCTTCEEEEES
T ss_pred CCCCCCCCCCCEEEEEC
Confidence 34799999999998853
No 243
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=21.35 E-value=1.8e+02 Score=18.94 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=37.6
Q ss_pred cCCCceeeeEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcccccCCceeecCCCEEEEEEccC
Q psy17313 109 AGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 109 ~g~~EvRAWti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
-|+.+.+...++.|+|..++-..+--+ .++.+-|. + | +...++..++|||.|.|.--++
T Consensus 10 Ng~~~~~~~~~~~~~tv~~Ll~~l~~~-~~~v~vav----N--------------~--~~v~~~~~L~~gD~V~ii~~V~ 68 (70)
T 1ryj_A 10 ITDDGKKILESGAPRRIKDVLGELEIP-IETVVVKK----N--------------G--QIVIDEEEIFDGDIIEVIRVIY 68 (70)
T ss_dssp EETTEEEEEEESSCCBHHHHHHHTTCC-TTTEEEEE----T--------------T--EECCTTSBCCTTCEEEEEECTT
T ss_pred eCccCceeEECCCCCcHHHHHHHhCCC-CCCEEEEE----C--------------C--EECCCcccCCCCCEEEEEeccc
Confidence 354455667888999998887776322 12332111 1 2 3345677999999998876554
Q ss_pred C
Q psy17313 189 A 189 (197)
Q Consensus 189 ~ 189 (197)
.
T Consensus 69 G 69 (70)
T 1ryj_A 69 G 69 (70)
T ss_dssp C
T ss_pred c
Confidence 3
No 244
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=20.94 E-value=95 Score=20.45 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=16.8
Q ss_pred CcccccCCceeecCCCEEEEEEc
Q psy17313 164 GKYRQQGRAYTVEDGDIIFFKFN 186 (197)
Q Consensus 164 Gk~r~eGkdYivqDGDIi~f~fn 186 (197)
|....-..+.+++.||++.+.-.
T Consensus 50 ~~~~~p~~~~~l~~GD~l~v~g~ 72 (86)
T 3jxo_A 50 GVLVVPRGDTEILSGDKLYVIVS 72 (86)
T ss_dssp TEEECCCTTCBCCTTCEEEEEEE
T ss_pred CEEECCCCCCEECCCCEEEEEEC
Confidence 33334567999999999988643
No 245
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=20.80 E-value=20 Score=27.29 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=9.8
Q ss_pred ccCceEEEEeCCCc
Q psy17313 19 TAKTQIYLVNLSAK 32 (197)
Q Consensus 19 T~KP~iyv~Nv~e~ 32 (197)
...|+++|+|+.|.
T Consensus 119 ~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 119 NGIDILIACNKSEL 132 (218)
T ss_dssp TCCCEEEEEECTTS
T ss_pred CCCCEEEEEEchHh
Confidence 45778888887653
No 246
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=20.60 E-value=49 Score=24.65 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=11.5
Q ss_pred CCceeecCCCEEEE
Q psy17313 170 GRAYTVEDGDIIFF 183 (197)
Q Consensus 170 GkdYivqDGDIi~f 183 (197)
++-+.+++||+|.|
T Consensus 106 ~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 106 RTYCRVHVGHVVRF 119 (130)
T ss_dssp TCCEECCTTCEEEE
T ss_pred CceeECCCCCEEEE
Confidence 45688999999876
No 247
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=20.55 E-value=83 Score=27.19 Aligned_cols=45 Identities=16% Similarity=0.052 Sum_probs=25.8
Q ss_pred cCc-eEEEEeCCCccccccc--cccHHHHHHHHhhcC---CCCeEEEechhh
Q psy17313 20 AKT-QIYLVNLSAKDYIKKK--NKWLPKIKEWVDAND---PGATIIPFSGVF 65 (197)
Q Consensus 20 ~KP-~iyv~Nv~e~d~~~~~--~~~~~~l~~~~~~~~---~~~~vv~~sa~~ 65 (197)
..| +|+++|+.|..- ... +...+++++++++.+ .+.+++++||.-
T Consensus 118 ~vp~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~ 168 (397)
T 1d2e_A 118 GVEHVVVYVNKADAVQ-DSEMVELVELEIRELLTEFGYKGEETPIIVGSALC 168 (397)
T ss_dssp TCCCEEEEEECGGGCS-CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred CCCeEEEEEECcccCC-CHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhh
Confidence 357 689999976421 000 112235556665542 135899999875
No 248
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=20.54 E-value=40 Score=21.85 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=31.6
Q ss_pred eEecCCCChhhhhhhhccccccCeeEEEEecchhhhhcCCHHHHHHcCcc--cccCCceeecCCCEEEEEEccCC
Q psy17313 117 WTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKY--RQQGRAYTVEDGDIIFFKFNAGA 189 (197)
Q Consensus 117 Wti~~GstA~~aAg~IHsDfekgFI~AeVi~~~D~~~~g~~~~ak~~Gk~--r~eGkdYivqDGDIi~f~fn~~~ 189 (197)
..++.|+|..++-..+. +....+... ++ |.+ +....++.++|||.|.|.--++.
T Consensus 10 ~~~~~~~tv~~ll~~l~--~~~~~v~va-vN----------------~~~v~~~~~~~~~L~~gD~v~i~~~V~G 65 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQLD--QRQAGAALA-IN----------------QQIVPREQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_dssp ECCCTTCCHHHHHHHHT--CCCSSEEEE-ET----------------TEEECHHHHTTCCCCTTEEECEEESCCC
T ss_pred EEcCCCCcHHHHHHHcC--CCCCCEEEE-EC----------------CEECCchhcCCcCCCCCCEEEEEeeccc
Confidence 45677888888777663 334443222 11 111 11224789999999988765553
No 249
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=20.52 E-value=26 Score=28.57 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=21.2
Q ss_pred cCcccccCCceeecCCCEEEEEEccC
Q psy17313 163 AGKYRQQGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 163 ~Gk~r~eGkdYivqDGDIi~f~fn~~ 188 (197)
.+.+++.|+.|.|+.||++.|.-+++
T Consensus 210 ~~~~~i~~~~~~l~~GD~i~~~~~~~ 235 (261)
T 1rc6_A 210 QGVYNLDNNWIPVKKGDYIFMGAYSL 235 (261)
T ss_dssp EEEEESSSCEEEEETTCEEEECSSEE
T ss_pred EEEEEECCEEEEeCCCCEEEECCCCc
Confidence 34677889999999999999876554
No 250
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=20.50 E-value=1.6e+02 Score=21.90 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=21.7
Q ss_pred cCceEEEEeCCCccccccccccHHHHHHHHhhcCCCCeEEEech
Q psy17313 20 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSG 63 (197)
Q Consensus 20 ~KP~iyv~Nv~e~d~~~~~~~~~~~l~~~~~~~~~~~~vv~~sa 63 (197)
..|++.++|+.+.. ..........++++.+. +..++.+||
T Consensus 134 ~~~i~~v~nK~Dl~--~~~~~~~~~a~~l~~~~--~~~~ld~Sa 173 (191)
T 1oix_A 134 NIVIMLVGNKSDLR--HLRAVPTDEARAFAEKN--GLSFIETSA 173 (191)
T ss_dssp TCEEEEEEECGGGG--GGCCSCHHHHHHHHHHT--TCEEEECCT
T ss_pred CCcEEEEEECcccc--cccccCHHHHHHHHHHc--CCEEEEEeC
Confidence 46788888875432 11223344555666543 455666554
No 251
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=20.29 E-value=57 Score=21.55 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=15.7
Q ss_pred cCCceeecCCCEEEEEEccC
Q psy17313 169 QGRAYTVEDGDIIFFKFNAG 188 (197)
Q Consensus 169 eGkdYivqDGDIi~f~fn~~ 188 (197)
.+.++.++|||.|.|---++
T Consensus 53 ~~~~~~l~~gDeV~i~Ppvs 72 (74)
T 3rpf_C 53 DNLNTPLKDGDVISLLPPVC 72 (74)
T ss_dssp CCTTCCCCTTCEEEEECCBC
T ss_pred CCCCcCCCCCCEEEEECCCC
Confidence 36789999999998865443
Done!