RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17313
(197 letters)
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 142 bits (359), Expect = 4e-45
Identities = 45/84 (53%), Positives = 61/84 (72%)
Query: 103 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRA 162
LQ +FTAG EV+AWT+ G AP+AA IHTDFEKGFI AEV+ ++DF + E +
Sbjct: 1 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKE 60
Query: 163 AGKYRQQGRAYTVEDGDIIFFKFN 186
AGK+R +G+ Y V+DGD++ F+FN
Sbjct: 61 AGKWRLEGKDYIVQDGDVMHFRFN 84
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 82
Score = 135 bits (341), Expect = 2e-42
Identities = 48/82 (58%), Positives = 64/82 (78%)
Query: 103 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRA 162
L +FT G+DEV++WTI+KGTKAPQAAG IHTDFEK F++ E+MH+ D ++ +E ACRA
Sbjct: 1 LINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRA 60
Query: 163 AGKYRQQGRAYTVEDGDIIFFK 184
AGKY +G+ Y +E GDI +K
Sbjct: 61 AGKYLTKGKEYVMESGDIAHWK 82
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 86.4 bits (213), Expect = 4e-21
Identities = 44/93 (47%), Positives = 63/93 (67%)
Query: 9 IEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQ 68
+E +N L LLTAK IYLVN+S +D++++KNK+LPKIK+W+D N PG T+IP S FE +
Sbjct: 203 VEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEER 262
Query: 69 LVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 101
L + ++E + S+L KII GY +L
Sbjct: 263 LTNFTEEEAIEECKKLNTKSMLPKIIVTGYNAL 295
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 65.4 bits (159), Expect = 1e-13
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 13 NKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDM 72
N LT K +Y+ N++ + + N +L +++E A GA ++P E ++ ++
Sbjct: 192 KSYNFLTLKPTMYIANVNEDGF--ENNPYLDRVREI--AAKEGAVVVPVCAAIESEIAEL 247
Query: 73 PDDERQRYLDEQKAT-SVLDKIITQGYKSL 101
D+E+ +L + L+++I GY L
Sbjct: 248 DDEEKVEFLQDLGIEEPGLNRVIRAGYALL 277
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 59.9 bits (144), Expect = 1e-11
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Query: 9 IEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQ 68
+ K + N + ++ + ++ G +IP S E
Sbjct: 203 LLAFASEIRRVNKPMVIAANKADAAS----DEQIKRLVRE--EEKRGYIVIPTSAAAELT 256
Query: 69 LVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQ------LQYFFTAGQDEV 114
L Y+ VL + + ++L L F + G EV
Sbjct: 257 LRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEV 308
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 33.9 bits (78), Expect = 0.001
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 105 YFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAG 164
G + ++KG+ A ++HTD KGF+ A
Sbjct: 12 LTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFL-----------------YAINAR 54
Query: 165 KYRQQGRAYTVEDGDII 181
R+ G Y ++ DI+
Sbjct: 55 TKRRVGEDYELQFNDIV 71
>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 27.9 bits (62), Expect = 0.32
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 18 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATII 59
+TA+ ++Y+ +DY + EW A A +
Sbjct: 1 VTAEIRLYITEGEVEDYRVFLERLEQSGLEWRPATPEDADAV 42
>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
485]}
Length = 402
Score = 26.9 bits (59), Expect = 1.7
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 147 HFDDFKEHGSEAACRAAGKYRQQGRAY 173
D F +G EA AGK + G +
Sbjct: 364 RVDYFWGYGDEAG-ELAGKQKTTGYVW 389
>d2ae0x1 b.52.1.4 (X:3-337) Membrane-bound lytic murein
transglycosylase A, MLTA {Escherichia coli [TaxId: 562]}
Length = 335
Score = 26.7 bits (59), Expect = 1.8
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 147 HFDDFKEHGSEAACRAAGKYRQQGRAY 173
HFD ++ G EA AG Y GR +
Sbjct: 304 HFDIYQGIGPEAG-HRAGWYNHYGRVW 329
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 24.6 bits (54), Expect = 2.5
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 149 DDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIF 182
DDF E AAC+ A ++R ++ T+E D+
Sbjct: 35 DDFIESVVTAACQLA-RHR---KSSTLEVKDVQL 64
>d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein
transglycosylase A, MLTA {Agrobacterium tumefaciens
[TaxId: 358]}
Length = 365
Score = 26.1 bits (57), Expect = 3.2
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 147 HFDDFKEHGSEAACRAAGKYRQQGRAY 173
D F G EA AG R + Y
Sbjct: 328 RGDIFTGSGFEAG-ELAGTVRNEADFY 353
>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId:
51453]}
Length = 314
Score = 25.6 bits (55), Expect = 3.9
Identities = 15/112 (13%), Positives = 23/112 (20%), Gaps = 10/112 (8%)
Query: 81 LDEQKATSVLDKIITQGYKSLQLQYF------FTAGQDEVKAWTIQKGTKAPQAAGRIHT 134
+DE K S + I++ G Y G
Sbjct: 26 IDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKK 85
Query: 135 DFEKGFIMAEVMHFDDFKEHGSEAACRA----AGKYRQQGRAYTVEDGDIIF 182
G + G A+ A + G Y D +
Sbjct: 86 VHALGLKLGIYSTAGTATCAGYPASLGYEDVDAADFADWGVDYLKYDNCNVP 137
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 93
Score = 23.9 bits (52), Expect = 7.8
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 71 DMPDDERQRYLDEQKATSVLDKIITQGYKSL-QLQYFFTAGQDEVKAW 117
D+P +R++ +K V + G +L + + + +E +W
Sbjct: 25 DLPPANTRRWVASRKIAVVRG--VIYGLITLAEAKQTYGLSDEEFNSW 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.407
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 779,048
Number of extensions: 36209
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 18
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)