BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17315
(561 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 310 bits (794), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/295 (55%), Positives = 197/295 (66%), Gaps = 24/295 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHXXXXXXXXXXLVQRG-DKKLKPEYV 325
RAFEDDD+THVEG V+P+RDIEII+EEL+LKD E + RG DKKLKPEY
Sbjct: 125 RAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
D + K+K++V + K Y DW++ +IE LNK LT+K
Sbjct: 184 --------------------DIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSK 223
Query: 386 TQIYLVNLSAKDYIXXXXXXXXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
+YLVNLS KDYI EWVD DPGA +IPFSG E +L ++ +ERQ+YL
Sbjct: 224 PMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYL 283
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+ S L KII G+ +LQL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGFI
Sbjct: 284 EANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFI 343
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
MAEVM ++DFKE GSE A +AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 344 MAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQ--QPKKK 396
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 92/125 (73%), Gaps = 20/125 (16%)
Query: 76 MGPKKTDEGEKKM-LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN 134
M PKK +G K ++GR GT+LK+GIVG+PNVGKSTFFNVLT S A+AENFPFCTIDPN
Sbjct: 1 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN 60
Query: 135 EN-------------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175
E+ +K+PAFLNVVDIAGLVKGA GQGLGNAFLSHISACD I
Sbjct: 61 ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGI 120
Query: 176 FHLCK 180
FHL +
Sbjct: 121 FHLTR 125
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 224 MGPKKTDEGEKKM-LLGRVGTNLKVGIVGVPNVGKSTFFNVLT 265
M PKK +G K ++GR GT+LK+GIVG+PNVGKSTFFNVLT
Sbjct: 1 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLT 43
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 165/283 (58%), Gaps = 19/283 (6%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHXXXXXXXXXXLVQRGDKKLKPEYVS 326
RAF+D ++ HVEG+V+P+RD+ II +EL +KD E + RG L+ +
Sbjct: 124 RAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEXKAKK 183
Query: 327 EVWFSFIYLFIKNGHIGHEDALV-KIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
E E A++ K+ ++ E K+ R GDWSN ++E +N L LLTAK
Sbjct: 184 E-----------------EQAIIEKVYQYLTE-TKQPIRKGDWSNREVEIINSLYLLTAK 225
Query: 386 TQIYLVNLSAKDYIXXXXXXXXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IYLVN S +D++ +W+D N PG T+IP S FE +L + ++E
Sbjct: 226 PVIYLVNXSERDFLRQKNKYLPKIKKWIDENSPGDTLIPXSVAFEERLTNFTEEEAIEEC 285
Query: 446 DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+ S L KII GY +L L +FT G+DEV++WTI+KGTKAPQAAG IHTDFEK F+
Sbjct: 286 KKLNTKSXLPKIIVTGYNALNLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFV 345
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 548
+ E+ H+ D ++ +E ACRAAGKY +G+ Y E GDI +K
Sbjct: 346 VGEIXHYQDLFDYKTENACRAAGKYLTKGKEYVXESGDIAHWK 388
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 72/123 (58%), Gaps = 20/123 (16%)
Query: 78 PKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPNE- 135
P K + K+ GR G NLK GIVG PNVGKSTFF +TKS N+P+ TIDP E
Sbjct: 2 PPKKQQEVVKVQWGRPGNNLKTGIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA 61
Query: 136 ------------------NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
++VPAFL V DIAGL KGA+ G GLGNAFLSH+ A DAI+
Sbjct: 62 KVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQ 121
Query: 178 LCK 180
+ +
Sbjct: 122 VVR 124
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 27/44 (61%)
Query: 226 PKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269
P K + K+ GR G NLK GIVG PNVGKSTFF +TK
Sbjct: 2 PPKKQQEVVKVQWGRPGNNLKTGIVGXPNVGKSTFFRAITKSVL 45
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 144/290 (49%), Gaps = 38/290 (13%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHXXXXXXXXXXLVQRGDKKLKPEYVS 326
R FE+DD+ HV G+++P+ DI+ IN EL L D++ + GDK+ K E
Sbjct: 105 RCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL-- 162
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
V + + G I R +++ + N LT K
Sbjct: 163 SVMEKILPVLENAGMI---------------------RSVGLDKEELQAIKSYNFLTLKP 201
Query: 387 QIYLVNLSAKDYIXXXXXXXXXXXEWVD-----ANDPGATIIPFSGVFEHQLVDMPDDER 441
+Y+ N++ + ++D A GA ++P E ++ ++ D+E+
Sbjct: 202 TMYIANVNEDGF---------ENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEK 252
Query: 442 QRYL-DEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDF 500
+L D L+++I GY L LQ +FTAG EV+AWT+ G AP+AA IHTDF
Sbjct: 253 VEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDF 312
Query: 501 EKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 550
EKGFI AEV+ ++DF + E + AGK+R +G+ Y V+DGD++ F+FN
Sbjct: 313 EKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFN 362
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 61/103 (59%), Gaps = 19/103 (18%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-------------------N 137
K GIVG+PNVGKST FN LTK+ A N+PFCTI+PN
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 138 KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCK 180
+P + VDIAGLV GA++G+GLGN FL++I DAI H+ +
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVR 105
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270
K GIVG+PNVGKST FN LTK E
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIE 28
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 139/286 (48%), Gaps = 26/286 (9%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHXXXXXXXXXXLVQRGDKKLKPEYVS 326
R F D DV HV G V+P+ D E++ EL L D+ R D++ P +
Sbjct: 108 RCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRK-EARADRERLPLLEA 166
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
+Y+ ++ G + AR S A L + LLTAK
Sbjct: 167 A---EGLYVHLQEG--------------------KPARTFPPSEAVARFLKETPLLTAKP 203
Query: 387 QIYLVNLSAKDYIXXXXXXXXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446
IY+ N++ +D A + GA ++ S E +L ++ +E + L
Sbjct: 204 VIYVANVAEEDLPDGRGNPQVEAVRR-KALEEGAEVVVVSARLEAELAELSGEEARELLA 262
Query: 447 EQKAT-SVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
S L ++ GY++L L FFTAG+ EV+AWT+++GTKAP+AAG IH+D E+GFI
Sbjct: 263 AYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFI 322
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551
AEV+ +D E G A + G R +G+ Y V+DGD+I+ FNA
Sbjct: 323 RAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 86/163 (52%), Gaps = 41/163 (25%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID------PNENNK------------ 138
L VGIVG+PNVGKST FN LT+++A A N+PF TID P E+ +
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 139 -----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCK------------- 180
VP + VDIAGLVKGA +G+GLGN FL+HI AI H+ +
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 181 -EKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKK 222
+ L + + T + +L LE R+ LR+ +A+AD ++
Sbjct: 122 VDPLEDAEVV--ETELLLADLATLERRLERLRK--EARADRER 160
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
L VGIVG+PNVGKST FN LT+
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTR 23
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 139/286 (48%), Gaps = 26/286 (9%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHXXXXXXXXXXLVQRGDKKLKPEYVS 326
R F D DV HV G V+P+ D E++ EL L D+ R D++ P +
Sbjct: 108 RCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRK-EARADRERLPLLEA 166
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
+Y+ ++ G + AR S A L + LLTAK
Sbjct: 167 A---EGLYVHLQEG--------------------KPARTFPPSEAVARFLKETPLLTAKP 203
Query: 387 QIYLVNLSAKDYIXXXXXXXXXXXEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446
IY+ N++ +D A + GA ++ S E +L ++ +E + L
Sbjct: 204 VIYVANVAEEDLPDGRGNPQVEAVRR-KALEEGAEVVVVSARLEAELAELSGEEARELLA 262
Query: 447 EQK-ATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
S L ++ GY++L L FFTAG+ EV+AWT+++GTKAP+AAG IH+D E+GFI
Sbjct: 263 AYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDXERGFI 322
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551
AEV+ +D E G A + G R +G+ Y V+DGD+I+ FNA
Sbjct: 323 RAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 86/163 (52%), Gaps = 41/163 (25%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID------PNENNK------------ 138
L VGIVG+PNVGKST FN LT+++A A N+PF TID P E+ +
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 139 -----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCK------------- 180
VP + VDIAGLVKGA +G+GLGN FL+HI AI H+ +
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 181 -EKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKK 222
+ L + + T + +L LE R+ LR+ +A+AD ++
Sbjct: 122 VDPLEDAEVV--ETELLLADLATLERRLERLRK--EARADRER 160
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
L VGIVG+PNVGKST FN LT+
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTR 23
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 82 DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN----ENN 137
+EGEK+ L + VG+VG PN GKS+ +T++ +PF T+ PN E +
Sbjct: 143 EEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS 202
Query: 138 KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLC 179
+ F + DI G+++GA+EG+GLG FL HI+ + ++
Sbjct: 203 EEERF-TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVL 243
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 230 DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 266
+EGEK+ L + VG+VG PN GKS+ +T+
Sbjct: 143 EEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTR 179
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 30/110 (27%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID--------------------PNENN 137
++G+VG PNVGKSTFF+ T N+PF TI+ PN N
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 138 K--------VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLC 179
+P + VD+AGLV GA EG+GLGN FL + A+ H+
Sbjct: 62 YEYRNGLALIP--VKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVV 109
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 246 KVGIVGVPNVGKSTFFNVLT 265
++G+VG PNVGKSTFF+ T
Sbjct: 2 EIGVVGKPNVGKSTFFSAAT 21
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 84 GEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN----ENNKV 139
G+++ ++ + VG+VG P+VGKST +V++ + ++ F T+ PN E +
Sbjct: 146 GKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDG 205
Query: 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKE---KLRNIF--FISLNTI 194
+F+ D+ GL++GA +G GLG+ FL HI I H+ + R+ + ++++N
Sbjct: 206 RSFVX-ADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDXSGLEGRDPYDDYLTINQE 264
Query: 195 TIWRNLKLLE 204
NL+L E
Sbjct: 265 LSEYNLRLTE 274
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 232 GEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLT 265
G+++ ++ + VG+VG P+VGKST +V++
Sbjct: 146 GKERYIVLELKVLADVGLVGFPSVGKSTLLSVVS 179
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTI--DPNENNKVPAFLNVVDIAGLVKGAA 156
VG VG P+VGKST + LT + + A + F T+ P A + ++D+ G++ GA
Sbjct: 75 VGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK 134
Query: 157 EGQGLGNAFLSHISACDAIF 176
+G+G G ++ C+ +F
Sbjct: 135 DGRGRGKQVIAVARTCNLLF 154
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 97 LKVGIVGVPNVGKSTFFN-VLTKSSAAAENFPFCTIDPNENNKVPAFLN-----VVDIAG 150
+KV IVG PNVGKST FN +L K A P T DP ++ F++ VD AG
Sbjct: 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDE---VFIDGRKYVFVDTAG 237
Query: 151 L 151
L
Sbjct: 238 L 238
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 81/198 (40%), Gaps = 33/198 (16%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAF---LNVVDIAGLVKG 154
V IVG PNVGKST FN L K A E+ T DP ++ V + +VD G+
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDT-VEWYGKTFKLVDTCGVFDN 62
Query: 155 AAE--GQGLGNAFLSHISACDAIFHLCK---------EKLRNIFFIS-LNTITIW---RN 199
+ Q L+ I D + + E L + S ++TI + N
Sbjct: 63 PQDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 122
Query: 200 LKLLETRIRDLRRSV------------DAKADSKKKMGPKKTDE-GEKKMLLGRVGTNLK 246
L+ E ++ S+ + D+ + KK +E G + +K
Sbjct: 123 LREFEREVKPELYSLGFGEPIPVSAEHNINLDTXLETIIKKLEEKGLDLESKPEITDAIK 182
Query: 247 VGIVGVPNVGKSTFFNVL 264
V IVG PNVGKST FN +
Sbjct: 183 VAIVGRPNVGKSTLFNAI 200
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST FN L K+
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKK 24
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAG 150
+KV + G PNVGK++ FN LT + N+P T++ E +N++D+ G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
+KV + G PNVGK++ FN LT
Sbjct: 6 VKVALAGCPNVGKTSLFNALT 26
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAG 150
+KV + G PNVGK++ FN LT + N+P T++ E +N++D+ G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
+KV + G PNVGK++ FN LT
Sbjct: 6 VKVALAGCPNVGKTSLFNALT 26
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFL--NVVDIAGL 151
T LKV IVG PNVGKS+ N ++S A + P T D E+ V + V+D AG+
Sbjct: 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGI 282
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTK--RAFEDD 272
T LKV IVG PNVGKS+ N ++ RA D
Sbjct: 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD 254
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAG 150
+KV + G PNVGK++ FN LT + N+P T++ E +N++D+ G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
+KV + G PNVGK++ FN LT
Sbjct: 6 VKVALAGCPNVGKTSLFNALT 26
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE---NNKVPAFLNVVDIAGLVKGA 155
V +VG PNVGK+T FN LT N+P T++ E + FL VVD+ G+
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFL-VVDLPGIYSLT 64
Query: 156 AEG--QGLGNAFLSHISA---CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL 210
A + + F+ +A D + C +RN+F L+L E ++++
Sbjct: 65 AHSIDELIARNFILDGNADVIVDIVDSTC--LMRNLFL----------TLELFEMEVKNI 112
Query: 211 RRSVDAKADSKKKMGPK 227
++ K D KK G K
Sbjct: 113 ILVLN-KFDLLKKKGAK 128
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 27/140 (19%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAF------LNVVDIAGL 151
++ ++G PNVGKST FN LT + N+P T++ E F VVD+ G+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGE----FEYNGEKFKVVDLPGV 64
Query: 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNI---------FFISLNTITIWRNLKL 202
A + I A D I + + + NI +++L + + NL L
Sbjct: 65 YSLTANS-------IDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANL-L 116
Query: 203 LETRIRDLRRSVDAKADSKK 222
L DL +S+ + D K
Sbjct: 117 LALNKMDLAKSLGIEIDVDK 136
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 246 KVGIVGVPNVGKSTFFNVLT 265
++ ++G PNVGKST FN LT
Sbjct: 9 EIALIGNPNVGKSTIFNALT 28
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE 135
++ ++G PNVGKST FN LT + N+P T++ E
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKE 42
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 246 KVGIVGVPNVGKSTFFNVLT 265
++ ++G PNVGKST FN LT
Sbjct: 5 EIALIGNPNVGKSTIFNALT 24
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE 135
++ ++G PNVGKST FN LT + N+P T++ E
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKE 42
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 246 KVGIVGVPNVGKSTFFNVLT 265
++ ++G PNVGKST FN LT
Sbjct: 5 EIALIGNPNVGKSTIFNALT 24
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE 135
++ ++G PNVGKST FN LT + N+P T++ E
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKE 43
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 246 KVGIVGVPNVGKSTFFNVLT 265
++ ++G PNVGKST FN LT
Sbjct: 6 EIALIGNPNVGKSTIFNALT 25
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 98 KVGIVGVPNVGKSTFFN-VLTKSSAAAENFPFCTIDPNE---NNKVPAFLNVVDIAGLVK 153
KV IVG PNVGKS+ FN +L K SA + P T D E FL +VD GL
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFL-LVDTGGLWS 61
Query: 154 G 154
G
Sbjct: 62 G 62
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKR 267
KV IVG PNVGKS+ FN L K+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKK 24
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVL-TKSSAAAENFPFCTIDPNENNKVPAFLN 144
+L + G ++VGI GVP VGKST + L + +AA +DP+ + L
Sbjct: 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILG 104
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVL 264
+L + G ++VGI GVP VGKST + L
Sbjct: 48 VLPQTGRAIRVGITGVPGVGKSTTIDAL 75
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVL-TKSSAAAENFPFCTIDPNENNKVPAFLN 144
+L + G ++VGI GVP VGKST + L + +AA +DP+ + L
Sbjct: 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILG 104
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVL 264
+L + G ++VGI GVP VGKST + L
Sbjct: 48 VLPQTGRAIRVGITGVPGVGKSTTIDAL 75
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPA--FLNVVDIAGLVKGAAEG 158
++G PN GK+T FN LT ++ N+P T++ + + + D+ G+ A
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65
Query: 159 QGLG 162
+G+
Sbjct: 66 EGIS 69
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 79 KKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFN-VLTKSSAAAENFPFCTIDPNENN 137
KK D G +LL R L++ IVG PNVGKST N +L + A + P T D
Sbjct: 232 KKADAG---ILLNR---GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEE 285
Query: 138 KV--PAFLNVVDIAGL 151
V +VD AG+
Sbjct: 286 IVIRGILFRIVDTAGV 301
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 227 KKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK--RAFEDDDVTHVEGEVNPV 284
KK D G +LL R L++ IVG PNVGKST N L RA VT + G V
Sbjct: 232 KKADAG---ILLNR---GLRMVIVGKPNVGKSTLLNRLLNEDRAI----VTDIPGTTRDV 281
Query: 285 RDIEII 290
EI+
Sbjct: 282 ISEEIV 287
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 199 NLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLG---RVGTNLKVGIVGVPNV 255
N+ L IRD RS A+A + + E +++LL G+ + VGI GVP V
Sbjct: 9 NVHELAQSIRDGDRSALARAITLVESTRADHREQAQQLLLDLMPEAGSAMHVGITGVPGV 68
Query: 256 GKSTFFNVLTKRAFE 270
GKST L E
Sbjct: 69 GKSTTIEALGMHLIE 83
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVL-TKSSAAAENFPFCTIDPNENN 137
L+ G+ + VGI GVP VGKST L A +DP+
Sbjct: 50 LMPEAGSAMHVGITGVPGVGKSTTIEALGMHLIEAGHRVAVLAVDPSSTR 99
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE 135
L +G++G PN GK+T FN LT S N+ T++ E
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKE 42
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
L +G++G PN GK+T FN LT
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLT 24
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE 135
L +G++G PN GK+T FN LT S N+ T++ E
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKE 42
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
L +G++G PN GK+T FN LT
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLT 24
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE 135
L +G++G PN GK+T FN LT S N+ T++ E
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKE 42
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
L +G++G PN GK+T FN LT
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLT 24
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-----NNKVPAFLNVVDIAGLVK 153
+GIVG N GK++ FN LT + + F T+ P NN+ + +VD G ++
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK---IMLVDTVGFIR 238
Query: 154 G 154
G
Sbjct: 239 G 239
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE 135
L VG++G PN GK+T FN LT + N+ T++ E
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKE 42
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
L VG++G PN GK+T FN LT
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLT 24
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCT 130
V I G PNVGKST LT + ++PF T
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTT 201
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 103 GVPNVGKSTFFNVLTKSSAAAENFPFCT 130
G PNVGKS+F N++++++ +++ F T
Sbjct: 36 GAPNVGKSSFMNIVSRANVDVQSYSFTT 63
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
G+ ++ ++G PN GK++ FN++T + N+P T++
Sbjct: 1 GSMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
G+ ++ ++G PN GK++ FN++T + N+P T++
Sbjct: 1 GSMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
G+ ++ ++G PN GK++ FN++T + N+P T++
Sbjct: 1 GSMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAA 156
++ I+G+PNVGKST N L K + A + KV L ++D G++
Sbjct: 121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKF 180
Query: 157 EGQGLGNAFLSHISACDAIFHL 178
E + +G + D+I +L
Sbjct: 181 EDELVGLRLAVTGAIKDSIINL 202
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKR 267
++ I+G+PNVGKST N L K+
Sbjct: 121 IRALIIGIPNVGKSTLINRLAKK 143
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-----NNKVPAFLNVVDIAGLVK 153
+GIVG N GK++ FN LT + + F T+ P NN+ + +VD ++
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK---IMLVDTVSFIR 238
Query: 154 G 154
G
Sbjct: 239 G 239
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP 133
+GIVG N GK++ FN LT + + F T+ P
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP 216
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
G+ ++ ++G PN GK++ FN++T + N+P +++
Sbjct: 1 GSMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVE 39
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
G+ ++ ++G PN GK++ FN++T + N+P ++
Sbjct: 1 GSMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVE 39
>pdb|2P67|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM KINASE
Length = 341
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 241 VGTNLKVGIVGVPNVGKSTF---FNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLK 297
G L++G+ G P GKSTF F +L R V V+ +PV I+ ++ R+
Sbjct: 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS-SPVTGGSILGDKTRMN 111
Query: 298 DV 299
D+
Sbjct: 112 DL 113
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 81 TDEGE-KKMLLGRVGTN--LKVGIVGVPNVGKSTFFNVLTKSSAAA 123
T +GE +K+LL ++ + +V IVGVPN GKST N L A++
Sbjct: 81 THKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASS 126
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 229 TDEGE-KKMLLGRVGTN--LKVGIVGVPNVGKSTFFNVLT-KRA 268
T +GE +K+LL ++ + +V IVGVPN GKST N L KRA
Sbjct: 81 THKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA 124
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
G+ ++ ++G P GK++ FN++T + N+P T++
Sbjct: 1 GSMTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 99 VGIVGVPNVGKSTFFN-VLTKSSAAAENFPFCTID 132
V IVG PNVGKST FN + + + E+ P T D
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRD 60
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 247 VGIVGVPNVGKSTFFN 262
V IVG PNVGKST FN
Sbjct: 26 VAIVGRPNVGKSTIFN 41
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 99 VGIVGVPNVGKSTFFN-VLTKSSAAAENFPFCTID 132
V IVG PNVGKST FN + + + E+ P T D
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRD 40
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 247 VGIVGVPNVGKSTFFN 262
V IVG PNVGKST FN
Sbjct: 6 VAIVGRPNVGKSTIFN 21
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 97 LKVGIVGVPNVGKSTFFNVLT-KSSAAAENFPFCTIDP-NENNKVPAF-LNVVDIAGLVK 153
+KV I G PN GKS+ N L + +A + T D E+ + L+++D AGL +
Sbjct: 8 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 67
Query: 154 GAAEGQGLG 162
+ E + +G
Sbjct: 68 ASDEVERIG 76
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFE 270
L+ G + VGI GVP VGKST L E
Sbjct: 49 LMPDAGRAMHVGITGVPGVGKSTSIEALGMHLIE 82
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVL 116
L+ G + VGI GVP VGKST L
Sbjct: 49 LMPDAGRAMHVGITGVPGVGKSTSIEAL 76
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 97 LKVGIVGVPNVGKSTFFNVLT-KSSAAAENFPFCTIDP-NENNKVPAF-LNVVDIAGLVK 153
+KV I G PN GKS+ N L + +A + T D E+ + L+++D AGL +
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64
Query: 154 GAAEGQGLG 162
+ E + +G
Sbjct: 65 ASDEVERIG 73
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFE 270
G +VGI GVP VGKST L E
Sbjct: 77 GNAHRVGITGVPGVGKSTAIEALGMHLIE 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,056,404
Number of Sequences: 62578
Number of extensions: 731762
Number of successful extensions: 2261
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2134
Number of HSP's gapped (non-prelim): 119
length of query: 561
length of database: 14,973,337
effective HSP length: 104
effective length of query: 457
effective length of database: 8,465,225
effective search space: 3868607825
effective search space used: 3868607825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)