Query psy17315
Match_columns 561
No_of_seqs 533 out of 5104
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:51:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09601 GTP-binding protein Y 100.0 3.7E-71 8.1E-76 567.0 28.0 343 96-551 2-364 (364)
2 PTZ00258 GTP-binding protein; 100.0 6E-70 1.3E-74 564.5 27.5 353 89-552 14-389 (390)
3 COG0012 Predicted GTPase, prob 100.0 8.3E-68 1.8E-72 532.3 25.2 343 96-551 2-372 (372)
4 KOG1491|consensus 100.0 4.7E-67 1E-71 513.2 25.9 364 84-551 8-391 (391)
5 TIGR00092 GTP-binding protein 100.0 1.2E-66 2.6E-71 533.7 29.8 344 96-551 2-368 (368)
6 PRK09602 translation-associate 100.0 3.7E-48 8E-53 406.7 21.8 330 96-549 1-394 (396)
7 COG1163 DRG Predicted GTPase [ 100.0 7.9E-39 1.7E-43 313.5 13.9 296 95-549 62-364 (365)
8 cd01900 YchF YchF subfamily. 100.0 1.2E-36 2.7E-41 303.5 19.2 254 99-465 1-274 (274)
9 COG1160 Predicted GTPases [Gen 100.0 4.5E-37 9.7E-42 316.4 5.4 322 97-464 4-372 (444)
10 PF06071 YchF-GTPase_C: Protei 100.0 2.6E-36 5.6E-41 240.0 2.5 84 467-550 1-84 (84)
11 cd04867 TGS_YchF_C TGS_YchF_C: 100.0 2.9E-35 6.3E-40 232.2 6.9 83 467-549 1-83 (83)
12 KOG1486|consensus 100.0 1.4E-29 2.9E-34 239.2 13.9 295 95-547 61-361 (364)
13 cd01899 Ygr210 Ygr210 subfamil 99.9 1.1E-27 2.4E-32 244.8 14.7 242 99-445 1-268 (318)
14 PRK03003 GTP-binding protein D 99.9 5.9E-28 1.3E-32 261.8 13.0 326 94-464 36-403 (472)
15 TIGR03594 GTPase_EngA ribosome 99.9 8.9E-28 1.9E-32 258.4 10.0 317 98-463 1-364 (429)
16 PRK09518 bifunctional cytidyla 99.9 3.2E-27 6.9E-32 267.6 8.0 320 97-463 276-641 (712)
17 PRK00093 GTP-binding protein D 99.9 8E-27 1.7E-31 251.4 8.9 320 97-463 2-364 (435)
18 KOG1487|consensus 99.9 1.1E-24 2.4E-29 206.9 8.1 288 97-547 60-355 (358)
19 KOG2484|consensus 99.9 5.6E-24 1.2E-28 214.1 8.4 161 7-181 148-332 (435)
20 COG1161 Predicted GTPases [Gen 99.9 6.7E-23 1.5E-27 210.8 11.6 142 5-157 34-193 (322)
21 PF02421 FeoB_N: Ferrous iron 99.9 9.7E-22 2.1E-26 179.9 8.0 149 97-264 1-156 (156)
22 KOG1489|consensus 99.8 2.4E-20 5.1E-25 183.0 11.1 159 96-267 196-365 (366)
23 cd04178 Nucleostemin_like Nucl 99.8 3.4E-20 7.5E-25 173.9 10.1 138 7-151 1-172 (172)
24 COG1159 Era GTPase [General fu 99.8 3.2E-20 6.9E-25 182.5 10.2 164 97-274 7-177 (298)
25 KOG2423|consensus 99.8 2E-20 4.4E-25 187.1 8.0 140 7-156 215-367 (572)
26 KOG1424|consensus 99.8 5.9E-20 1.3E-24 190.3 7.7 143 7-156 176-374 (562)
27 COG0536 Obg Predicted GTPase [ 99.8 2.1E-19 4.6E-24 178.6 10.5 161 97-268 160-332 (369)
28 KOG2485|consensus 99.8 1.1E-19 2.3E-24 178.6 8.1 153 7-169 48-226 (335)
29 PRK12299 obgE GTPase CgtA; Rev 99.8 4.5E-19 9.8E-24 183.2 11.7 159 96-268 158-327 (335)
30 PRK12296 obgE GTPase CgtA; Rev 99.8 3E-19 6.4E-24 191.2 9.7 164 94-268 157-339 (500)
31 PRK09563 rbgA GTPase YlqF; Rev 99.8 5.4E-19 1.2E-23 179.7 9.8 140 6-156 25-181 (287)
32 PRK12298 obgE GTPase CgtA; Rev 99.8 1.5E-18 3.3E-23 182.7 13.3 163 97-270 160-334 (390)
33 TIGR03596 GTPase_YlqF ribosome 99.8 8.2E-19 1.8E-23 177.5 9.9 140 6-156 22-178 (276)
34 COG2262 HflX GTPases [General 99.8 1.4E-18 3E-23 177.3 11.1 152 96-268 192-355 (411)
35 PRK12297 obgE GTPase CgtA; Rev 99.8 2.2E-18 4.7E-23 182.5 12.9 157 97-268 159-326 (424)
36 cd01896 DRG The developmentall 99.8 2.9E-18 6.4E-23 169.1 11.8 85 98-182 2-88 (233)
37 TIGR02729 Obg_CgtA Obg family 99.8 4.7E-18 1E-22 175.4 12.7 160 96-267 157-327 (329)
38 cd01858 NGP_1 NGP-1. Autoanti 99.7 4E-18 8.7E-23 157.9 8.7 140 5-151 8-157 (157)
39 TIGR00436 era GTP-binding prot 99.7 1.7E-17 3.7E-22 167.5 12.3 159 98-272 2-167 (270)
40 COG0486 ThdF Predicted GTPase 99.7 1.1E-17 2.3E-22 173.8 8.7 155 93-269 214-376 (454)
41 cd01898 Obg Obg subfamily. Th 99.7 6.4E-17 1.4E-21 150.9 11.9 157 98-267 2-169 (170)
42 TIGR03156 GTP_HflX GTP-binding 99.7 4.5E-17 9.8E-22 169.6 11.8 151 95-267 188-350 (351)
43 cd01857 HSR1_MMR1 HSR1/MMR1. 99.7 5.4E-17 1.2E-21 147.6 9.2 122 6-154 12-141 (141)
44 COG1160 Predicted GTPases [Gen 99.7 1.3E-16 2.8E-21 165.4 12.9 239 6-267 84-349 (444)
45 COG0370 FeoB Fe2+ transport sy 99.7 9.2E-17 2E-21 173.5 11.8 153 97-268 4-163 (653)
46 cd01849 YlqF_related_GTPase Yl 99.7 1.8E-16 3.8E-21 146.6 10.6 137 7-151 1-155 (155)
47 PRK11058 GTPase HflX; Provisio 99.7 2.7E-16 5.9E-21 167.5 11.3 152 97-268 198-361 (426)
48 COG1084 Predicted GTPase [Gene 99.7 2.3E-16 5E-21 156.6 9.9 158 95-266 167-333 (346)
49 cd04938 TGS_Obg-like TGS_Obg-l 99.6 5.7E-17 1.2E-21 130.0 3.4 57 475-549 20-76 (76)
50 PRK15494 era GTPase Era; Provi 99.6 7.8E-16 1.7E-20 160.1 12.5 160 95-272 51-219 (339)
51 KOG0410|consensus 99.6 2.2E-16 4.7E-21 155.4 7.2 156 96-267 178-339 (410)
52 TIGR03594 GTPase_EngA ribosome 99.6 7.4E-16 1.6E-20 165.9 10.8 240 6-267 79-342 (429)
53 KOG1423|consensus 99.6 3E-15 6.6E-20 146.4 10.1 170 94-270 70-272 (379)
54 PRK00089 era GTPase Era; Revie 99.6 3.7E-15 8E-20 152.2 11.1 161 97-271 6-173 (292)
55 PRK00093 GTP-binding protein D 99.6 2.7E-15 5.8E-20 161.9 10.6 240 5-267 80-342 (435)
56 cd01881 Obg_like The Obg-like 99.6 5.2E-15 1.1E-19 138.6 11.0 158 101-266 1-174 (176)
57 PRK03003 GTP-binding protein D 99.6 5.4E-15 1.2E-19 160.7 12.6 240 5-267 117-380 (472)
58 PRK05291 trmE tRNA modificatio 99.6 7.6E-15 1.7E-19 158.1 11.3 150 94-268 213-369 (449)
59 cd01856 YlqF YlqF. Proteins o 99.6 7.5E-15 1.6E-19 138.0 9.7 136 6-152 20-171 (171)
60 PRK09518 bifunctional cytidyla 99.6 1.6E-14 3.5E-19 164.3 13.4 236 6-268 355-620 (712)
61 KOG1191|consensus 99.6 7.3E-15 1.6E-19 152.3 9.2 172 91-268 263-449 (531)
62 cd01897 NOG NOG1 is a nucleola 99.6 2.3E-14 4.9E-19 133.5 11.7 158 97-268 1-167 (168)
63 COG1159 Era GTPase [General fu 99.6 5.5E-16 1.2E-20 152.8 0.4 161 245-442 7-169 (298)
64 COG0218 Predicted GTPase [Gene 99.5 1.2E-14 2.6E-19 136.1 7.9 156 95-267 23-195 (200)
65 KOG1191|consensus 99.5 8.7E-16 1.9E-20 159.1 -0.0 309 98-447 77-452 (531)
66 PRK09554 feoB ferrous iron tra 99.5 2.8E-14 6.1E-19 161.8 11.7 153 96-267 3-166 (772)
67 PRK04213 GTP-binding protein; 99.5 6.9E-14 1.5E-18 134.6 12.4 165 95-268 8-191 (201)
68 COG0486 ThdF Predicted GTPase 99.5 2.1E-15 4.5E-20 156.9 1.3 163 241-447 214-378 (454)
69 cd01878 HflX HflX subfamily. 99.5 4.5E-14 9.9E-19 136.3 10.3 151 96-267 41-203 (204)
70 cd01894 EngA1 EngA1 subfamily. 99.5 5.8E-14 1.3E-18 128.7 9.0 149 100-267 1-156 (157)
71 cd01879 FeoB Ferrous iron tran 99.5 1.2E-13 2.6E-18 127.0 11.1 148 101-267 1-155 (158)
72 PRK13796 GTPase YqeH; Provisio 99.5 7.3E-14 1.6E-18 146.6 8.2 131 8-154 72-223 (365)
73 cd01895 EngA2 EngA2 subfamily. 99.5 2.9E-13 6.3E-18 125.8 11.0 160 96-266 2-172 (174)
74 cd04164 trmE TrmE (MnmE, ThdF, 99.5 2.1E-13 4.6E-18 124.7 9.9 148 96-267 1-155 (157)
75 cd04171 SelB SelB subfamily. 99.5 1.9E-13 4.2E-18 126.3 9.7 151 97-266 1-163 (164)
76 cd01861 Rab6 Rab6 subfamily. 99.5 4.7E-13 1E-17 123.6 11.4 149 98-267 2-160 (161)
77 PF01926 MMR_HSR1: 50S ribosom 99.5 6.2E-14 1.4E-18 122.8 5.1 85 98-182 1-90 (116)
78 cd04142 RRP22 RRP22 subfamily. 99.4 1.1E-12 2.5E-17 126.2 14.1 164 97-273 1-178 (198)
79 cd01855 YqeH YqeH. YqeH is an 99.4 1.5E-13 3.2E-18 131.4 7.6 131 6-151 35-190 (190)
80 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 5.8E-13 1.3E-17 123.9 11.1 151 97-268 3-163 (166)
81 TIGR03598 GTPase_YsxC ribosome 99.4 1.4E-13 3.1E-18 130.1 7.0 151 94-257 16-178 (179)
82 cd04160 Arfrp1 Arfrp1 subfamil 99.4 1E-12 2.2E-17 122.3 12.2 148 98-267 1-167 (167)
83 cd04149 Arf6 Arf6 subfamily. 99.4 8.8E-13 1.9E-17 123.5 11.8 150 95-266 8-167 (168)
84 PF02421 FeoB_N: Ferrous iron 99.4 2.8E-15 6E-20 137.4 -5.1 146 246-438 2-154 (156)
85 cd01859 MJ1464 MJ1464. This f 99.4 4.2E-13 9E-18 124.0 9.1 136 6-151 13-156 (156)
86 cd04154 Arl2 Arl2 subfamily. 99.4 1.1E-12 2.3E-17 123.3 12.0 148 95-266 13-172 (173)
87 cd04163 Era Era subfamily. Er 99.4 6.5E-13 1.4E-17 122.3 10.2 158 96-267 3-167 (168)
88 cd04150 Arf1_5_like Arf1-Arf5- 99.4 1.2E-12 2.7E-17 121.3 12.0 147 97-266 1-158 (159)
89 TIGR00450 mnmE_trmE_thdF tRNA 99.4 4.3E-13 9.2E-18 143.9 10.0 154 92-268 199-359 (442)
90 cd04158 ARD1 ARD1 subfamily. 99.4 1.3E-12 2.8E-17 122.3 11.9 148 98-269 1-161 (169)
91 PRK15467 ethanolamine utilizat 99.4 5.5E-13 1.2E-17 123.7 9.1 138 98-268 3-146 (158)
92 cd01868 Rab11_like Rab11-like. 99.4 1.2E-12 2.6E-17 121.6 11.1 150 97-267 4-163 (165)
93 TIGR03597 GTPase_YqeH ribosome 99.4 3.2E-13 7E-18 141.5 8.0 135 5-155 63-218 (360)
94 cd04109 Rab28 Rab28 subfamily. 99.4 1.2E-12 2.7E-17 127.5 11.6 153 97-270 1-167 (215)
95 cd01865 Rab3 Rab3 subfamily. 99.4 1.5E-12 3.3E-17 121.2 11.4 150 97-267 2-161 (165)
96 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 1.8E-12 4E-17 122.0 12.0 148 96-266 15-173 (174)
97 PRK00454 engB GTP-binding prot 99.4 6.5E-13 1.4E-17 127.1 9.0 160 94-267 22-192 (196)
98 cd04157 Arl6 Arl6 subfamily. 99.4 1.6E-12 3.5E-17 120.0 11.1 149 98-266 1-161 (162)
99 cd01866 Rab2 Rab2 subfamily. 99.4 1.8E-12 3.9E-17 121.1 11.2 152 97-269 5-166 (168)
100 smart00178 SAR Sar1p-like memb 99.4 2E-12 4.3E-17 123.0 11.2 151 94-267 15-183 (184)
101 TIGR00437 feoB ferrous iron tr 99.4 8.8E-13 1.9E-17 146.4 9.8 146 103-267 1-153 (591)
102 cd01867 Rab8_Rab10_Rab13_like 99.4 2.4E-12 5.1E-17 120.1 11.3 152 96-268 3-164 (167)
103 cd04112 Rab26 Rab26 subfamily. 99.4 2.9E-12 6.2E-17 122.5 12.1 154 97-271 1-165 (191)
104 cd01862 Rab7 Rab7 subfamily. 99.4 3.5E-12 7.6E-17 119.0 12.4 153 97-269 1-167 (172)
105 COG2262 HflX GTPases [General 99.4 7.4E-14 1.6E-18 142.9 0.8 160 243-441 191-352 (411)
106 cd04156 ARLTS1 ARLTS1 subfamil 99.4 3E-12 6.6E-17 118.1 11.4 146 98-266 1-159 (160)
107 cd01864 Rab19 Rab19 subfamily. 99.4 4.6E-12 9.9E-17 117.8 12.5 152 96-267 3-164 (165)
108 cd04113 Rab4 Rab4 subfamily. 99.4 5.3E-12 1.2E-16 116.7 12.4 150 97-267 1-160 (161)
109 cd04106 Rab23_lke Rab23-like s 99.4 3.6E-12 7.7E-17 117.8 10.9 150 97-267 1-161 (162)
110 cd04119 RJL RJL (RabJ-Like) su 99.4 5.7E-12 1.2E-16 116.7 12.3 151 97-268 1-166 (168)
111 cd04145 M_R_Ras_like M-Ras/R-R 99.4 6.2E-12 1.3E-16 116.3 12.5 149 97-267 3-162 (164)
112 cd00878 Arf_Arl Arf (ADP-ribos 99.4 4.7E-12 1E-16 116.7 11.6 146 98-266 1-157 (158)
113 cd04122 Rab14 Rab14 subfamily. 99.4 3.8E-12 8.3E-17 118.5 11.1 150 97-268 3-163 (166)
114 cd04136 Rap_like Rap-like subf 99.4 6.1E-12 1.3E-16 116.2 12.2 149 97-267 2-161 (163)
115 smart00177 ARF ARF-like small 99.4 5.1E-12 1.1E-16 119.1 11.6 150 96-267 13-172 (175)
116 cd01666 TGS_DRG_C TGS_DRG_C: 99.4 2.1E-13 4.5E-18 108.8 1.8 70 467-548 1-74 (75)
117 cd01889 SelB_euk SelB subfamil 99.4 1.8E-12 3.9E-17 124.1 8.5 153 97-268 1-185 (192)
118 cd04140 ARHI_like ARHI subfami 99.4 5.1E-12 1.1E-16 117.6 11.3 150 97-267 2-163 (165)
119 smart00173 RAS Ras subfamily o 99.4 6.3E-12 1.4E-16 116.5 11.9 149 97-267 1-160 (164)
120 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 9.5E-12 2.1E-16 119.9 13.5 153 97-269 1-168 (201)
121 cd01863 Rab18 Rab18 subfamily. 99.4 1.1E-11 2.4E-16 114.4 13.5 149 97-267 1-160 (161)
122 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 5.6E-12 1.2E-16 117.1 11.3 150 98-267 2-164 (168)
123 cd04138 H_N_K_Ras_like H-Ras/N 99.3 9.7E-12 2.1E-16 114.4 12.8 148 97-267 2-160 (162)
124 cd04114 Rab30 Rab30 subfamily. 99.3 6.1E-12 1.3E-16 117.2 11.4 151 96-267 7-167 (169)
125 PRK12296 obgE GTPase CgtA; Rev 99.3 1.8E-13 4E-18 146.9 1.2 171 241-444 156-339 (500)
126 cd00157 Rho Rho (Ras homology) 99.3 1.7E-11 3.7E-16 114.2 14.3 154 97-266 1-170 (171)
127 cd04123 Rab21 Rab21 subfamily. 99.3 7E-12 1.5E-16 115.4 11.5 150 97-267 1-160 (162)
128 PRK09866 hypothetical protein; 99.3 3E-13 6.5E-18 145.8 2.6 35 97-131 70-105 (741)
129 TIGR02528 EutP ethanolamine ut 99.3 2.2E-12 4.8E-17 116.8 8.0 140 98-265 2-141 (142)
130 smart00175 RAB Rab subfamily o 99.3 6.8E-12 1.5E-16 115.9 11.1 151 97-268 1-161 (164)
131 cd00154 Rab Rab family. Rab G 99.3 8.8E-12 1.9E-16 113.7 11.6 149 97-266 1-159 (159)
132 cd04151 Arl1 Arl1 subfamily. 99.3 8.8E-12 1.9E-16 115.1 11.6 147 98-266 1-157 (158)
133 cd04155 Arl3 Arl3 subfamily. 99.3 8.9E-12 1.9E-16 116.6 11.7 149 94-266 12-172 (173)
134 PLN00223 ADP-ribosylation fact 99.3 7.9E-12 1.7E-16 118.6 11.4 151 95-268 16-177 (181)
135 TIGR00231 small_GTP small GTP- 99.3 5.5E-12 1.2E-16 114.5 9.9 151 97-265 2-160 (161)
136 cd04175 Rap1 Rap1 subgroup. T 99.3 1E-11 2.3E-16 115.2 11.8 149 97-267 2-161 (164)
137 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.4E-11 2.9E-16 117.1 12.7 150 96-268 3-169 (183)
138 cd04110 Rab35 Rab35 subfamily. 99.3 1.1E-11 2.3E-16 119.5 11.9 152 96-268 6-166 (199)
139 cd01860 Rab5_related Rab5-rela 99.3 1.1E-11 2.4E-16 114.6 11.6 150 97-267 2-161 (163)
140 PLN03118 Rab family protein; P 99.3 9.2E-12 2E-16 121.0 11.5 156 95-271 13-179 (211)
141 cd00880 Era_like Era (E. coli 99.3 3.8E-12 8.3E-17 115.7 8.2 155 101-267 1-162 (163)
142 cd01893 Miro1 Miro1 subfamily. 99.3 1.7E-11 3.7E-16 114.3 12.3 152 97-267 1-162 (166)
143 cd04159 Arl10_like Arl10-like 99.3 6.2E-12 1.3E-16 114.9 9.2 147 99-266 2-158 (159)
144 KOG1490|consensus 99.3 2.1E-12 4.6E-17 133.9 6.7 164 95-268 167-340 (620)
145 cd04127 Rab27A Rab27a subfamil 99.3 1.2E-11 2.7E-16 116.5 11.2 151 97-268 5-176 (180)
146 cd00881 GTP_translation_factor 99.3 6.1E-12 1.3E-16 119.0 9.0 152 98-268 1-186 (189)
147 cd04116 Rab9 Rab9 subfamily. 99.3 2.2E-11 4.9E-16 113.6 12.6 151 96-267 5-169 (170)
148 cd04144 Ras2 Ras2 subfamily. 99.3 1.3E-11 2.9E-16 117.8 11.1 150 98-269 1-163 (190)
149 PTZ00133 ADP-ribosylation fact 99.3 2.2E-11 4.8E-16 115.6 12.5 150 94-267 15-176 (182)
150 cd04161 Arl2l1_Arl13_like Arl2 99.3 4.5E-12 9.8E-17 118.5 7.5 150 98-266 1-166 (167)
151 cd04176 Rap2 Rap2 subgroup. T 99.3 2.5E-11 5.5E-16 112.4 12.4 149 97-267 2-161 (163)
152 cd00879 Sar1 Sar1 subfamily. 99.3 1.6E-11 3.6E-16 116.9 11.4 149 94-267 17-189 (190)
153 cd01669 TGS_Ygr210_C TGS_Ygr21 99.3 9.3E-13 2E-17 105.5 2.2 61 471-548 13-75 (76)
154 cd04120 Rab12 Rab12 subfamily. 99.3 2.5E-11 5.3E-16 117.2 12.6 152 97-268 1-162 (202)
155 cd01890 LepA LepA subfamily. 99.3 1.6E-11 3.6E-16 115.5 11.1 150 98-268 2-176 (179)
156 PTZ00369 Ras-like protein; Pro 99.3 2.5E-11 5.4E-16 115.8 12.4 152 96-268 5-166 (189)
157 cd00877 Ran Ran (Ras-related n 99.3 3.1E-11 6.8E-16 112.7 12.6 151 97-270 1-160 (166)
158 cd04111 Rab39 Rab39 subfamily. 99.3 2E-11 4.3E-16 118.8 11.7 152 97-269 3-166 (211)
159 cd04118 Rab24 Rab24 subfamily. 99.3 4.1E-11 9E-16 114.5 13.6 155 97-269 1-166 (193)
160 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 2.6E-11 5.6E-16 114.0 11.8 152 97-269 3-164 (172)
161 cd04117 Rab15 Rab15 subfamily. 99.3 2.7E-11 6E-16 112.4 11.7 150 97-267 1-160 (161)
162 cd04125 RabA_like RabA-like su 99.3 2.6E-11 5.7E-16 115.4 11.7 151 97-269 1-162 (188)
163 cd04124 RabL2 RabL2 subfamily. 99.3 3.8E-11 8.3E-16 111.3 12.3 148 97-268 1-157 (161)
164 cd04128 Spg1 Spg1p. Spg1p (se 99.3 4.6E-11 9.9E-16 113.4 13.0 156 97-270 1-167 (182)
165 cd04101 RabL4 RabL4 (Rab-like4 99.3 2.4E-11 5.2E-16 112.6 10.8 150 97-267 1-162 (164)
166 cd01876 YihA_EngB The YihA (En 99.3 8.7E-12 1.9E-16 115.1 7.7 157 98-267 1-169 (170)
167 cd04139 RalA_RalB RalA/RalB su 99.3 4.5E-11 9.8E-16 110.3 12.4 150 97-268 1-161 (164)
168 KOG0092|consensus 99.3 3.7E-11 8E-16 110.9 11.4 154 95-273 4-171 (200)
169 cd04121 Rab40 Rab40 subfamily. 99.3 2.5E-11 5.5E-16 115.9 10.8 154 96-270 6-168 (189)
170 cd04132 Rho4_like Rho4-like su 99.3 5.9E-11 1.3E-15 112.8 13.3 155 97-268 1-166 (187)
171 cd00876 Ras Ras family. The R 99.3 2.3E-11 5E-16 111.7 10.1 148 98-267 1-159 (160)
172 TIGR00436 era GTP-binding prot 99.3 7.7E-13 1.7E-17 133.6 -0.3 200 246-485 2-215 (270)
173 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 5.3E-11 1.2E-15 111.6 12.1 153 98-269 2-165 (170)
174 PRK12289 GTPase RsgA; Reviewed 99.2 1E-11 2.2E-16 129.0 7.7 131 7-155 91-238 (352)
175 PF00025 Arf: ADP-ribosylation 99.2 6.4E-11 1.4E-15 111.7 12.3 151 94-267 12-174 (175)
176 cd04126 Rab20 Rab20 subfamily. 99.2 5.7E-11 1.2E-15 116.1 12.2 154 97-268 1-189 (220)
177 cd04137 RheB Rheb (Ras Homolog 99.2 4.4E-11 9.6E-16 112.8 11.0 150 97-268 2-162 (180)
178 cd04146 RERG_RasL11_like RERG/ 99.2 3.8E-11 8.1E-16 111.6 10.4 149 98-267 1-162 (165)
179 PLN03110 Rab GTPase; Provision 99.2 4.3E-11 9.4E-16 116.8 11.1 153 95-268 11-173 (216)
180 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 2E-11 4.3E-16 113.8 8.2 152 98-266 1-163 (164)
181 PLN03071 GTP-binding nuclear p 99.2 7.9E-11 1.7E-15 115.2 12.7 159 95-276 12-179 (219)
182 PRK12297 obgE GTPase CgtA; Rev 99.2 6.3E-13 1.4E-17 141.0 -2.4 163 242-443 156-325 (424)
183 smart00174 RHO Rho (Ras homolo 99.2 1.5E-10 3.2E-15 108.4 13.9 153 99-268 1-171 (174)
184 cd04177 RSR1 RSR1 subgroup. R 99.2 1.3E-10 2.8E-15 108.5 13.4 151 97-268 2-163 (168)
185 cd01892 Miro2 Miro2 subfamily. 99.2 1.3E-10 2.9E-15 108.8 13.4 154 95-268 3-165 (169)
186 PLN03108 Rab family protein; P 99.2 6.5E-11 1.4E-15 115.1 11.4 152 96-268 6-167 (210)
187 cd04166 CysN_ATPS CysN_ATPS su 99.2 1.4E-11 3.1E-16 119.5 6.7 143 98-258 1-183 (208)
188 cd04135 Tc10 TC10 subfamily. 99.2 2.1E-10 4.5E-15 107.4 14.4 153 97-267 1-172 (174)
189 cd01874 Cdc42 Cdc42 subfamily. 99.2 1.9E-10 4.2E-15 108.4 14.0 154 97-267 2-173 (175)
190 cd04115 Rab33B_Rab33A Rab33B/R 99.2 9.4E-11 2E-15 109.7 11.2 151 97-267 3-167 (170)
191 cd04134 Rho3 Rho3 subfamily. 99.2 2.5E-10 5.3E-15 109.0 14.0 156 97-269 1-174 (189)
192 cd04138 H_N_K_Ras_like H-Ras/N 99.2 3.4E-11 7.3E-16 110.8 7.8 153 245-440 2-157 (162)
193 cd04143 Rhes_like Rhes_like su 99.2 2E-10 4.3E-15 114.4 13.7 151 97-268 1-170 (247)
194 cd04136 Rap_like Rap-like subf 99.2 2.4E-11 5.1E-16 112.3 6.6 154 245-440 2-158 (163)
195 cd01870 RhoA_like RhoA-like su 99.2 3.9E-10 8.5E-15 105.7 14.9 153 97-267 2-173 (175)
196 cd04147 Ras_dva Ras-dva subfam 99.2 2.1E-10 4.5E-15 110.3 13.2 151 98-268 1-162 (198)
197 cd04148 RGK RGK subfamily. Th 99.2 1.4E-10 2.9E-15 113.7 11.8 150 97-269 1-163 (221)
198 cd04130 Wrch_1 Wrch-1 subfamil 99.2 5.2E-10 1.1E-14 105.0 15.2 151 97-265 1-170 (173)
199 KOG1489|consensus 99.2 6.4E-13 1.4E-17 131.1 -4.8 163 242-441 194-363 (366)
200 cd01891 TypA_BipA TypA (tyrosi 99.2 1.5E-10 3.2E-15 110.9 11.4 141 97-257 3-170 (194)
201 COG3596 Predicted GTPase [Gene 99.2 1.3E-10 2.8E-15 113.4 10.6 171 93-274 36-227 (296)
202 cd01871 Rac1_like Rac1-like su 99.2 5.6E-10 1.2E-14 105.1 14.7 153 97-267 2-173 (174)
203 COG0218 Predicted GTPase [Gene 99.2 8.1E-12 1.8E-16 117.2 2.0 168 243-441 23-193 (200)
204 cd01884 EF_Tu EF-Tu subfamily. 99.2 5.7E-11 1.2E-15 114.0 7.7 143 97-257 3-171 (195)
205 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 9.6E-11 2.1E-15 112.5 9.2 165 97-270 1-185 (196)
206 PRK15494 era GTPase Era; Provi 99.2 5.4E-12 1.2E-16 131.3 0.1 201 245-485 53-267 (339)
207 cd01867 Rab8_Rab10_Rab13_like 99.2 1.3E-10 2.8E-15 108.3 9.4 159 245-444 4-164 (167)
208 TIGR03598 GTPase_YsxC ribosome 99.1 3.2E-11 6.9E-16 114.1 5.1 154 243-434 17-179 (179)
209 PF10662 PduV-EutP: Ethanolami 99.1 7.8E-11 1.7E-15 105.8 7.3 139 97-266 2-143 (143)
210 cd04133 Rop_like Rop subfamily 99.1 7.3E-10 1.6E-14 104.6 14.3 154 97-267 2-171 (176)
211 TIGR00157 ribosome small subun 99.1 5.5E-11 1.2E-15 118.2 6.5 131 7-155 38-185 (245)
212 cd04145 M_R_Ras_like M-Ras/R-R 99.1 1.1E-10 2.3E-15 108.0 8.0 157 245-440 3-159 (164)
213 PF00009 GTP_EFTU: Elongation 99.1 7.2E-11 1.6E-15 112.6 7.0 152 97-268 4-186 (188)
214 cd04127 Rab27A Rab27a subfamil 99.1 1.9E-10 4E-15 108.4 9.7 159 244-442 4-174 (180)
215 cd04175 Rap1 Rap1 subgroup. T 99.1 1.1E-10 2.3E-15 108.3 7.9 154 245-440 2-158 (164)
216 cd04131 Rnd Rnd subfamily. Th 99.1 7.7E-10 1.7E-14 104.6 13.8 154 97-267 2-174 (178)
217 KOG0092|consensus 99.1 3.4E-11 7.4E-16 111.1 4.3 158 245-443 6-165 (200)
218 TIGR03156 GTP_HflX GTP-binding 99.1 7.9E-12 1.7E-16 130.4 -0.2 58 243-302 188-247 (351)
219 cd04122 Rab14 Rab14 subfamily. 99.1 1.9E-10 4E-15 107.1 9.1 156 245-441 3-160 (166)
220 PRK12299 obgE GTPase CgtA; Rev 99.1 6.9E-11 1.5E-15 122.4 6.7 164 241-442 155-325 (335)
221 KOG0073|consensus 99.1 4.3E-10 9.3E-15 100.9 10.7 155 95-268 15-177 (185)
222 cd04139 RalA_RalB RalA/RalB su 99.1 1.9E-10 4E-15 106.2 8.9 158 246-442 2-159 (164)
223 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 2E-10 4.3E-15 106.8 8.9 156 245-441 3-160 (166)
224 cd01865 Rab3 Rab3 subfamily. 99.1 2.1E-10 4.6E-15 106.7 9.1 156 245-441 2-159 (165)
225 cd04112 Rab26 Rab26 subfamily. 99.1 2.1E-10 4.5E-15 109.7 9.2 160 246-445 2-163 (191)
226 cd04140 ARHI_like ARHI subfami 99.1 1.2E-10 2.6E-15 108.3 7.3 156 245-439 2-159 (165)
227 COG0536 Obg Predicted GTPase [ 99.1 4.2E-12 9.2E-17 126.9 -3.0 166 242-441 157-329 (369)
228 smart00173 RAS Ras subfamily o 99.1 1.5E-10 3.2E-15 107.2 7.5 154 246-441 2-158 (164)
229 TIGR00487 IF-2 translation ini 99.1 5.3E-10 1.1E-14 123.8 13.1 149 94-266 85-247 (587)
230 PRK12298 obgE GTPase CgtA; Rev 99.1 1.7E-11 3.7E-16 129.4 1.2 166 242-443 157-331 (390)
231 PRK12317 elongation factor 1-a 99.1 1.4E-10 3E-15 124.8 8.2 149 95-259 5-195 (425)
232 PRK00089 era GTPase Era; Revie 99.1 1.2E-11 2.6E-16 126.4 -0.3 161 245-442 6-168 (292)
233 cd04144 Ras2 Ras2 subfamily. 99.1 2.1E-10 4.5E-15 109.6 8.2 159 246-444 1-162 (190)
234 KOG0084|consensus 99.1 2E-10 4.2E-15 106.5 7.4 158 243-441 8-168 (205)
235 cd01868 Rab11_like Rab11-like. 99.1 3.6E-10 7.7E-15 104.9 9.3 154 245-440 4-160 (165)
236 cd04176 Rap2 Rap2 subgroup. T 99.1 1.6E-10 3.4E-15 107.0 6.9 154 245-439 2-157 (163)
237 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 3.7E-10 8E-15 106.1 9.5 159 245-444 3-163 (172)
238 PTZ00369 Ras-like protein; Pro 99.1 2.4E-10 5.1E-15 109.1 8.2 165 244-447 5-169 (189)
239 KOG0078|consensus 99.1 2.7E-10 5.8E-15 107.1 8.1 162 242-445 10-174 (207)
240 cd04103 Centaurin_gamma Centau 99.1 1.5E-09 3.2E-14 100.7 13.0 146 97-267 1-157 (158)
241 cd04120 Rab12 Rab12 subfamily. 99.1 3.6E-10 7.8E-15 109.1 9.2 161 246-446 2-164 (202)
242 cd04104 p47_IIGP_like p47 (47- 99.1 4.2E-10 9.1E-15 108.2 9.6 157 96-268 1-183 (197)
243 cd01875 RhoG RhoG subfamily. 99.1 1.7E-09 3.7E-14 103.4 13.7 156 96-268 3-176 (191)
244 cd04119 RJL RJL (RabJ-Like) su 99.1 3.6E-10 7.8E-15 104.6 8.5 158 246-442 2-164 (168)
245 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.1 1.8E-09 4E-14 106.2 13.7 157 95-268 12-187 (232)
246 cd04107 Rab32_Rab38 Rab38/Rab3 99.1 4E-10 8.6E-15 108.6 8.8 164 246-446 2-169 (201)
247 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 2E-09 4.3E-14 102.2 13.4 156 95-267 4-178 (182)
248 cd00882 Ras_like_GTPase Ras-li 99.1 5.6E-10 1.2E-14 100.0 9.2 146 101-266 1-157 (157)
249 cd04177 RSR1 RSR1 subgroup. R 99.1 3E-10 6.6E-15 105.9 7.6 158 245-442 2-161 (168)
250 cd01864 Rab19 Rab19 subfamily. 99.1 5.9E-10 1.3E-14 103.5 9.0 156 245-440 4-161 (165)
251 cd04121 Rab40 Rab40 subfamily. 99.1 6.2E-10 1.4E-14 106.3 9.3 158 244-444 6-166 (189)
252 PRK05291 trmE tRNA modificatio 99.1 7.1E-11 1.5E-15 127.4 3.1 155 242-444 213-369 (449)
253 cd04129 Rho2 Rho2 subfamily. 99.0 4.4E-09 9.5E-14 100.1 15.1 155 97-268 2-172 (187)
254 cd01866 Rab2 Rab2 subfamily. 99.0 6.9E-10 1.5E-14 103.6 9.3 155 244-440 4-161 (168)
255 TIGR00475 selB selenocysteine- 99.0 2.2E-10 4.7E-15 127.3 6.8 152 97-267 1-164 (581)
256 cd04106 Rab23_lke Rab23-like s 99.0 5.7E-10 1.2E-14 103.0 8.3 151 246-439 2-157 (162)
257 TIGR00491 aIF-2 translation in 99.0 1E-09 2.2E-14 121.4 11.5 153 96-266 4-213 (590)
258 PRK05306 infB translation init 99.0 1.3E-09 2.8E-14 123.6 12.6 151 93-266 287-449 (787)
259 KOG0094|consensus 99.0 1.3E-09 2.9E-14 100.7 10.2 158 96-274 22-190 (221)
260 CHL00071 tufA elongation facto 99.0 3.7E-10 8.1E-15 120.7 7.6 145 93-255 9-179 (409)
261 cd04137 RheB Rheb (Ras Homolog 99.0 9.2E-10 2E-14 103.8 9.4 159 245-444 2-162 (180)
262 cd01888 eIF2_gamma eIF2-gamma 99.0 7.5E-10 1.6E-14 107.0 8.9 151 98-269 2-199 (203)
263 CHL00189 infB translation init 99.0 9.8E-10 2.1E-14 123.5 10.9 154 94-267 242-408 (742)
264 PRK10512 selenocysteinyl-tRNA- 99.0 5.4E-10 1.2E-14 124.5 8.7 151 98-267 2-164 (614)
265 cd04171 SelB SelB subfamily. 99.0 1E-10 2.2E-15 107.9 2.4 154 246-438 2-159 (164)
266 KOG0394|consensus 99.0 2.9E-09 6.4E-14 97.5 11.5 158 94-270 7-179 (210)
267 cd04113 Rab4 Rab4 subfamily. 99.0 1.1E-09 2.3E-14 101.2 9.0 154 246-440 2-157 (161)
268 cd04108 Rab36_Rab34 Rab34/Rab3 99.0 1.1E-09 2.4E-14 102.7 9.0 157 246-442 2-162 (170)
269 cd04124 RabL2 RabL2 subfamily. 99.0 8.4E-10 1.8E-14 102.3 8.2 154 246-443 2-156 (161)
270 KOG0070|consensus 99.0 7.2E-10 1.6E-14 102.1 7.4 156 93-268 14-177 (181)
271 KOG0098|consensus 99.0 1E-09 2.2E-14 100.6 8.2 156 245-442 7-165 (216)
272 cd04110 Rab35 Rab35 subfamily. 99.0 1.1E-09 2.3E-14 105.5 9.0 160 244-445 6-167 (199)
273 PRK00098 GTPase RsgA; Reviewed 99.0 5E-10 1.1E-14 114.6 6.7 130 7-153 82-228 (298)
274 PRK11058 GTPase HflX; Provisio 99.0 7.1E-11 1.5E-15 126.1 0.5 58 244-303 197-256 (426)
275 PRK12735 elongation factor Tu; 99.0 9.3E-10 2E-14 117.1 8.6 160 90-267 6-201 (396)
276 cd04116 Rab9 Rab9 subfamily. 99.0 1.1E-09 2.4E-14 102.2 8.1 158 245-440 6-166 (170)
277 cd04118 Rab24 Rab24 subfamily. 99.0 1.1E-09 2.4E-14 104.5 8.3 162 246-446 2-167 (193)
278 smart00176 RAN Ran (Ras-relate 99.0 2.4E-09 5.3E-14 103.1 10.6 149 102-273 1-158 (200)
279 cd04109 Rab28 Rab28 subfamily. 99.0 1.2E-09 2.7E-14 106.4 8.7 158 246-444 2-165 (215)
280 TIGR00450 mnmE_trmE_thdF tRNA 99.0 2E-10 4.3E-15 123.4 3.2 200 197-442 144-357 (442)
281 TIGR02729 Obg_CgtA Obg family 99.0 6.2E-10 1.3E-14 115.2 6.8 61 241-303 154-216 (329)
282 smart00175 RAB Rab subfamily o 99.0 1.8E-09 3.9E-14 99.7 9.1 156 246-442 2-159 (164)
283 cd04142 RRP22 RRP22 subfamily. 99.0 2.3E-09 4.9E-14 103.3 10.0 62 383-447 115-176 (198)
284 cd01860 Rab5_related Rab5-rela 99.0 1.9E-09 4.1E-14 99.6 9.0 155 245-440 2-158 (163)
285 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.0 8.5E-09 1.9E-13 100.9 13.9 155 97-268 2-175 (222)
286 cd04123 Rab21 Rab21 subfamily. 99.0 1.7E-09 3.8E-14 99.3 8.6 154 246-440 2-157 (162)
287 PRK12288 GTPase RsgA; Reviewed 99.0 5.4E-10 1.2E-14 116.2 5.5 99 47-155 160-271 (347)
288 PF00071 Ras: Ras family; Int 99.0 6E-09 1.3E-13 96.2 11.9 149 98-267 1-159 (162)
289 cd01875 RhoG RhoG subfamily. 99.0 1.6E-09 3.5E-14 103.6 8.2 158 245-441 4-173 (191)
290 COG0370 FeoB Fe2+ transport sy 99.0 7.2E-11 1.6E-15 128.3 -1.3 156 245-441 4-160 (653)
291 KOG0075|consensus 99.0 5.7E-10 1.2E-14 98.2 4.4 148 94-267 18-180 (186)
292 cd01863 Rab18 Rab18 subfamily. 99.0 1.9E-09 4.1E-14 99.4 8.2 154 246-440 2-157 (161)
293 cd01861 Rab6 Rab6 subfamily. 99.0 2E-09 4.4E-14 99.1 8.4 153 246-440 2-157 (161)
294 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 2E-09 4.3E-14 105.9 8.7 163 245-446 14-189 (232)
295 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.9 1.9E-09 4.2E-14 102.3 8.2 156 245-439 6-174 (182)
296 cd04125 RabA_like RabA-like su 98.9 2.5E-09 5.5E-14 101.7 8.9 158 246-444 2-161 (188)
297 cd04133 Rop_like Rop subfamily 98.9 8.9E-10 1.9E-14 104.0 5.5 159 245-442 2-170 (176)
298 PRK00049 elongation factor Tu; 98.9 2.4E-09 5.3E-14 113.9 9.4 158 92-267 8-201 (396)
299 PRK04213 GTP-binding protein; 98.9 1.1E-09 2.3E-14 105.5 6.1 54 244-302 9-62 (201)
300 cd04126 Rab20 Rab20 subfamily. 98.9 1.9E-09 4.2E-14 105.3 7.8 160 246-445 2-190 (220)
301 cd01862 Rab7 Rab7 subfamily. 98.9 3.3E-09 7.2E-14 98.8 9.1 160 246-444 2-166 (172)
302 cd04154 Arl2 Arl2 subfamily. 98.9 1.8E-09 3.9E-14 101.2 7.3 152 244-438 14-168 (173)
303 cd04143 Rhes_like Rhes_like su 98.9 2.2E-09 4.7E-14 106.9 8.2 162 246-442 2-168 (247)
304 cd01897 NOG NOG1 is a nucleola 98.9 4.3E-10 9.4E-15 104.5 3.0 55 245-302 1-57 (168)
305 cd01874 Cdc42 Cdc42 subfamily. 98.9 1.6E-09 3.5E-14 102.1 6.8 156 245-440 2-170 (175)
306 cd01853 Toc34_like Toc34-like 98.9 1.9E-09 4E-14 107.2 7.4 89 92-180 27-123 (249)
307 cd04148 RGK RGK subfamily. Th 98.9 2.7E-09 5.8E-14 104.6 8.3 157 246-443 2-161 (221)
308 COG1084 Predicted GTPase [Gene 98.9 3.8E-10 8.2E-15 112.7 2.1 169 234-439 158-330 (346)
309 cd04128 Spg1 Spg1p. Spg1p (se 98.9 3.2E-09 7E-14 100.8 8.4 156 246-442 2-163 (182)
310 KOG0094|consensus 98.9 1.9E-09 4.1E-14 99.7 6.4 157 245-442 23-182 (221)
311 cd04111 Rab39 Rab39 subfamily. 98.9 4.4E-09 9.6E-14 102.3 9.5 157 245-442 3-163 (211)
312 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.9E-09 4.1E-14 109.8 7.1 131 7-154 80-226 (287)
313 smart00174 RHO Rho (Ras homolo 98.9 1.5E-09 3.2E-14 101.6 5.8 155 247-441 1-168 (174)
314 cd04117 Rab15 Rab15 subfamily. 98.9 3.5E-09 7.6E-14 98.2 8.2 153 246-440 2-157 (161)
315 KOG0394|consensus 98.9 1.2E-09 2.5E-14 100.1 4.8 169 244-446 9-179 (210)
316 cd04132 Rho4_like Rho4-like su 98.9 4.2E-09 9.1E-14 99.9 8.9 159 246-445 2-167 (187)
317 PLN03110 Rab GTPase; Provision 98.9 4E-09 8.7E-14 102.9 8.9 157 244-442 12-171 (216)
318 cd01873 RhoBTB RhoBTB subfamil 98.9 2.5E-08 5.5E-13 95.7 14.3 150 97-266 3-193 (195)
319 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.9 5.7E-09 1.2E-13 99.0 9.6 161 244-445 3-170 (183)
320 PRK05506 bifunctional sulfate 98.9 2.3E-09 5.1E-14 120.8 8.1 155 94-266 22-230 (632)
321 PRK00454 engB GTP-binding prot 98.9 9.1E-10 2E-14 105.2 4.0 157 243-439 23-188 (196)
322 cd04160 Arfrp1 Arfrp1 subfamil 98.9 2.9E-09 6.3E-14 98.9 7.3 152 247-437 2-161 (167)
323 KOG0084|consensus 98.9 7.5E-09 1.6E-13 96.1 9.5 154 95-268 8-171 (205)
324 PLN03071 GTP-binding nuclear p 98.9 3.7E-09 8.1E-14 103.4 8.0 157 243-443 12-170 (219)
325 KOG0087|consensus 98.9 3.8E-09 8.2E-14 99.0 7.5 158 242-440 12-171 (222)
326 cd00877 Ran Ran (Ras-related n 98.9 2.8E-09 6E-14 99.5 6.6 154 246-443 2-157 (166)
327 cd04131 Rnd Rnd subfamily. Th 98.9 3.3E-09 7.2E-14 100.3 7.2 155 245-440 2-171 (178)
328 cd04115 Rab33B_Rab33A Rab33B/R 98.9 5.9E-09 1.3E-13 97.5 8.9 152 245-436 3-160 (170)
329 cd04150 Arf1_5_like Arf1-Arf5- 98.9 2E-09 4.4E-14 99.7 5.6 150 246-438 2-154 (159)
330 cd01886 EF-G Elongation factor 98.9 2.8E-09 6E-14 107.5 6.8 78 98-182 1-98 (270)
331 PLN03108 Rab family protein; P 98.9 7.7E-09 1.7E-13 100.5 9.7 158 245-443 7-166 (210)
332 PRK12736 elongation factor Tu; 98.9 5E-09 1.1E-13 111.5 9.0 158 93-268 9-200 (394)
333 cd04101 RabL4 RabL4 (Rab-like4 98.9 6.1E-09 1.3E-13 96.4 8.5 154 246-442 2-161 (164)
334 cd00154 Rab Rab family. Rab G 98.9 5.7E-09 1.2E-13 95.0 8.1 153 246-438 2-155 (159)
335 cd04134 Rho3 Rho3 subfamily. 98.9 3.1E-09 6.8E-14 101.4 6.5 160 246-443 2-172 (189)
336 PLN03118 Rab family protein; P 98.9 7.3E-09 1.6E-13 100.6 9.1 162 243-444 13-176 (211)
337 TIGR01393 lepA GTP-binding pro 98.9 9.4E-09 2E-13 114.4 11.1 149 98-269 5-180 (595)
338 cd01871 Rac1_like Rac1-like su 98.9 4.7E-09 1E-13 98.8 7.4 158 245-440 2-170 (174)
339 cd04149 Arf6 Arf6 subfamily. 98.9 5E-09 1.1E-13 98.0 7.5 151 244-437 9-162 (168)
340 cd04156 ARLTS1 ARLTS1 subfamil 98.9 2E-09 4.3E-14 99.2 4.7 151 246-439 1-156 (160)
341 KOG0079|consensus 98.9 5.8E-09 1.3E-13 91.9 7.3 158 247-447 11-171 (198)
342 cd04158 ARD1 ARD1 subfamily. 98.9 4.6E-09 9.9E-14 98.2 7.0 156 246-444 1-160 (169)
343 cd01895 EngA2 EngA2 subfamily. 98.9 5.1E-10 1.1E-14 103.9 0.4 160 245-440 3-170 (174)
344 cd01883 EF1_alpha Eukaryotic e 98.8 2.7E-09 5.8E-14 104.4 5.4 150 98-258 1-194 (219)
345 PRK04004 translation initiatio 98.8 1.2E-08 2.6E-13 113.3 11.2 154 95-266 5-215 (586)
346 cd01893 Miro1 Miro1 subfamily. 98.8 7.2E-09 1.6E-13 96.5 8.0 158 246-440 2-159 (166)
347 PLN03127 Elongation factor Tu; 98.8 5.9E-09 1.3E-13 112.3 8.4 157 93-267 58-250 (447)
348 TIGR03680 eif2g_arch translati 98.8 7.5E-09 1.6E-13 110.6 9.0 156 95-268 3-195 (406)
349 cd04157 Arl6 Arl6 subfamily. 98.8 4.9E-09 1.1E-13 96.6 6.7 152 247-438 2-157 (162)
350 cd01878 HflX HflX subfamily. 98.8 1E-09 2.2E-14 105.9 2.1 60 242-303 39-100 (204)
351 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 3.1E-09 6.7E-14 99.9 5.2 152 244-438 15-169 (174)
352 smart00177 ARF ARF-like small 98.8 4.3E-09 9.3E-14 99.1 6.1 153 244-439 13-168 (175)
353 cd04146 RERG_RasL11_like RERG/ 98.8 5.4E-09 1.2E-13 97.0 6.4 156 246-441 1-160 (165)
354 TIGR00483 EF-1_alpha translati 98.8 6.7E-09 1.5E-13 111.8 8.0 151 94-259 5-197 (426)
355 cd04147 Ras_dva Ras-dva subfam 98.8 8.9E-09 1.9E-13 99.0 8.0 157 246-442 1-160 (198)
356 cd04103 Centaurin_gamma Centau 98.8 5.4E-09 1.2E-13 96.9 6.1 151 246-440 2-154 (158)
357 cd00876 Ras Ras family. The R 98.8 1E-08 2.2E-13 94.0 8.0 152 246-439 1-155 (160)
358 cd04168 TetM_like Tet(M)-like 98.8 2.3E-08 5E-13 98.9 10.9 79 98-183 1-99 (237)
359 PTZ00133 ADP-ribosylation fact 98.8 5.9E-09 1.3E-13 98.9 6.4 156 243-441 16-174 (182)
360 KOG0080|consensus 98.8 2.7E-08 5.8E-13 89.1 9.9 155 96-272 11-177 (209)
361 PF00350 Dynamin_N: Dynamin fa 98.8 6.2E-09 1.4E-13 97.0 6.4 80 99-182 1-139 (168)
362 cd01898 Obg Obg subfamily. Th 98.8 4.1E-09 8.8E-14 98.1 5.1 56 246-303 2-59 (170)
363 cd04159 Arl10_like Arl10-like 98.8 4.9E-09 1.1E-13 95.6 5.4 150 247-438 2-154 (159)
364 PLN00223 ADP-ribosylation fact 98.8 1.2E-08 2.6E-13 96.8 8.3 154 244-440 17-173 (181)
365 COG1100 GTPase SAR1 and relate 98.8 3.2E-08 6.9E-13 96.3 11.5 155 97-268 6-184 (219)
366 KOG0078|consensus 98.8 2.4E-08 5.1E-13 94.1 9.6 153 95-268 11-173 (207)
367 TIGR00485 EF-Tu translation el 98.8 8.4E-09 1.8E-13 109.9 7.5 155 94-266 10-198 (394)
368 PTZ00132 GTP-binding nuclear p 98.8 5.9E-08 1.3E-12 94.5 12.9 154 95-271 8-170 (215)
369 cd04151 Arl1 Arl1 subfamily. 98.8 4.3E-09 9.2E-14 97.1 4.5 151 246-439 1-154 (158)
370 cd04114 Rab30 Rab30 subfamily. 98.8 1.4E-08 3.1E-13 94.3 8.2 156 244-441 7-165 (169)
371 cd04161 Arl2l1_Arl13_like Arl2 98.8 6.6E-09 1.4E-13 97.1 5.4 66 247-317 2-67 (167)
372 cd01889 SelB_euk SelB subfamil 98.8 1.8E-09 3.9E-14 103.3 1.7 57 383-439 119-180 (192)
373 KOG0088|consensus 98.8 6E-09 1.3E-13 92.8 4.6 161 244-444 13-174 (218)
374 KOG1490|consensus 98.8 8.9E-09 1.9E-13 107.4 6.6 175 239-447 163-343 (620)
375 smart00178 SAR Sar1p-like memb 98.8 1.6E-08 3.6E-13 96.0 8.0 153 242-438 15-178 (184)
376 KOG0080|consensus 98.8 9.1E-09 2E-13 92.0 5.5 157 244-441 11-170 (209)
377 cd04165 GTPBP1_like GTPBP1-lik 98.8 2.4E-08 5.1E-13 98.0 9.0 150 98-266 1-220 (224)
378 cd00879 Sar1 Sar1 subfamily. 98.8 1.9E-08 4.2E-13 95.6 8.2 153 242-438 17-184 (190)
379 cd00878 Arf_Arl Arf (ADP-ribos 98.8 8E-09 1.7E-13 95.0 5.3 150 246-438 1-153 (158)
380 PRK04000 translation initiatio 98.8 2E-08 4.2E-13 107.4 9.1 159 92-268 5-200 (411)
381 KOG0091|consensus 98.8 5E-08 1.1E-12 87.5 10.1 152 245-443 9-171 (213)
382 PRK09554 feoB ferrous iron tra 98.8 1.8E-09 3.8E-14 123.1 1.0 160 245-442 4-165 (772)
383 PRK10218 GTP-binding protein; 98.7 4.3E-08 9.2E-13 108.9 11.4 154 97-270 6-196 (607)
384 cd04130 Wrch_1 Wrch-1 subfamil 98.7 1E-08 2.2E-13 96.2 5.6 152 246-438 2-167 (173)
385 PF00071 Ras: Ras family; Int 98.7 1.7E-08 3.8E-13 93.1 7.1 154 246-441 1-157 (162)
386 cd01892 Miro2 Miro2 subfamily. 98.7 8.3E-09 1.8E-13 96.6 4.5 59 244-302 4-64 (169)
387 PRK05433 GTP-binding protein L 98.7 5.3E-08 1.2E-12 108.6 11.4 150 97-269 8-184 (600)
388 cd01882 BMS1 Bms1. Bms1 is an 98.7 2.9E-08 6.2E-13 97.5 8.2 77 93-182 36-114 (225)
389 TIGR02836 spore_IV_A stage IV 98.7 8.7E-08 1.9E-12 99.2 11.8 124 92-220 13-192 (492)
390 cd01870 RhoA_like RhoA-like su 98.7 1.9E-08 4.2E-13 94.1 6.6 57 245-303 2-60 (175)
391 PRK05124 cysN sulfate adenylyl 98.7 1.7E-08 3.7E-13 109.7 6.9 150 92-259 23-215 (474)
392 cd04162 Arl9_Arfrp2_like Arl9/ 98.7 1.5E-08 3.2E-13 94.4 5.5 68 247-318 2-69 (164)
393 smart00176 RAN Ran (Ras-relate 98.7 2.3E-08 4.9E-13 96.4 6.8 150 250-443 1-152 (200)
394 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.7 4.1E-08 8.8E-13 96.1 8.7 156 245-440 2-171 (222)
395 TIGR00991 3a0901s02IAP34 GTP-b 98.7 1.3E-08 2.8E-13 102.9 5.2 85 94-179 36-126 (313)
396 cd04135 Tc10 TC10 subfamily. 98.7 1.8E-08 4E-13 94.2 5.8 158 246-440 2-169 (174)
397 cd01894 EngA1 EngA1 subfamily. 98.7 8.2E-10 1.8E-14 101.0 -3.4 54 249-304 2-57 (157)
398 PRK09435 membrane ATPase/prote 98.7 5.9E-08 1.3E-12 100.0 9.8 105 140-268 148-259 (332)
399 PLN03126 Elongation factor Tu; 98.7 3.2E-08 6.9E-13 107.3 8.2 145 93-255 78-248 (478)
400 PF08477 Miro: Miro-like prote 98.7 2.3E-08 5E-13 87.5 5.9 78 98-182 1-84 (119)
401 cd00157 Rho Rho (Ras homology) 98.7 2E-08 4.4E-13 93.4 5.8 59 246-304 2-60 (171)
402 KOG0098|consensus 98.7 5.3E-08 1.2E-12 89.5 8.3 148 96-267 6-166 (216)
403 cd01879 FeoB Ferrous iron tran 98.7 1.2E-08 2.6E-13 93.5 4.2 144 249-439 1-151 (158)
404 cd04164 trmE TrmE (MnmE, ThdF, 98.7 1.4E-09 3.1E-14 99.3 -2.3 149 245-440 2-152 (157)
405 TIGR00437 feoB ferrous iron tr 98.7 2.4E-09 5.2E-14 119.2 -0.9 145 251-442 1-152 (591)
406 cd01887 IF2_eIF5B IF2/eIF5B (i 98.7 2E-08 4.3E-13 93.1 5.3 151 245-439 1-160 (168)
407 KOG0086|consensus 98.7 4.5E-08 9.8E-13 86.7 7.2 152 244-436 9-162 (214)
408 cd00881 GTP_translation_factor 98.7 6.8E-09 1.5E-13 98.1 2.1 152 247-438 2-180 (189)
409 cd04170 EF-G_bact Elongation f 98.7 1.5E-08 3.2E-13 102.3 4.7 146 98-266 1-170 (268)
410 KOG0071|consensus 98.7 6.7E-08 1.5E-12 84.6 8.0 151 91-268 12-177 (180)
411 TIGR01394 TypA_BipA GTP-bindin 98.7 6.7E-08 1.5E-12 107.4 10.1 153 98-270 3-192 (594)
412 cd04105 SR_beta Signal recogni 98.7 5.2E-08 1.1E-12 94.2 7.4 78 98-183 2-84 (203)
413 KOG0087|consensus 98.7 1.7E-07 3.8E-12 88.0 10.5 151 95-267 13-174 (222)
414 cd01890 LepA LepA subfamily. 98.6 5.1E-09 1.1E-13 98.4 0.3 54 383-439 118-171 (179)
415 cd01873 RhoBTB RhoBTB subfamil 98.6 4.3E-08 9.4E-13 94.1 6.5 154 245-439 3-190 (195)
416 cd04169 RF3 RF3 subfamily. Pe 98.6 4.1E-08 9E-13 98.8 6.7 78 98-182 4-105 (267)
417 PF03193 DUF258: Protein of un 98.6 2.1E-08 4.6E-13 92.2 4.1 91 56-155 2-101 (161)
418 cd04166 CysN_ATPS CysN_ATPS su 98.6 1.8E-08 3.9E-13 97.8 3.8 53 385-437 131-186 (208)
419 TIGR02034 CysN sulfate adenyly 98.6 4.9E-08 1.1E-12 104.3 7.3 145 97-259 1-187 (406)
420 cd01876 YihA_EngB The YihA (En 98.6 1.7E-08 3.8E-13 92.9 3.4 57 383-439 109-165 (170)
421 KOG0088|consensus 98.6 1.1E-07 2.5E-12 84.8 8.2 156 94-271 11-177 (218)
422 TIGR00484 EF-G translation elo 98.6 8.2E-08 1.8E-12 109.4 9.4 79 97-182 11-109 (689)
423 TIGR00231 small_GTP small GTP- 98.6 2.1E-08 4.7E-13 90.7 3.6 152 245-437 2-156 (161)
424 cd04163 Era Era subfamily. Er 98.6 4.8E-09 1E-13 96.3 -0.7 58 244-303 3-62 (168)
425 cd04102 RabL3 RabL3 (Rab-like3 98.6 1.4E-07 3.1E-12 90.9 9.5 80 97-183 1-89 (202)
426 cd01858 NGP_1 NGP-1. Autoanti 98.6 3.7E-08 8.1E-13 91.1 5.2 56 244-302 102-157 (157)
427 cd04155 Arl3 Arl3 subfamily. 98.6 4E-08 8.7E-13 91.8 5.3 58 243-304 13-70 (173)
428 cd01881 Obg_like The Obg-like 98.6 2E-08 4.4E-13 93.7 3.2 53 249-303 1-55 (176)
429 cd01891 TypA_BipA TypA (tyrosi 98.6 1.8E-08 4E-13 96.4 3.0 55 383-438 116-175 (194)
430 KOG0097|consensus 98.6 1.4E-07 3.1E-12 82.4 8.0 150 245-437 12-165 (215)
431 TIGR02528 EutP ethanolamine ut 98.6 2.1E-08 4.6E-13 90.6 2.8 137 246-438 2-138 (142)
432 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 4.1E-08 9E-13 89.1 4.7 125 163-302 3-138 (141)
433 cd04129 Rho2 Rho2 subfamily. 98.6 7.9E-08 1.7E-12 91.5 6.6 158 245-443 2-171 (187)
434 KOG0073|consensus 98.6 1.2E-07 2.7E-12 85.3 7.2 151 244-435 16-168 (185)
435 PRK15467 ethanolamine utilizat 98.6 1.1E-08 2.4E-13 94.8 0.4 54 384-442 91-144 (158)
436 KOG0074|consensus 98.6 1.6E-07 3.5E-12 82.4 7.3 164 89-267 10-177 (185)
437 cd04104 p47_IIGP_like p47 (47- 98.6 2.9E-08 6.3E-13 95.4 3.0 162 245-443 2-182 (197)
438 KOG0410|consensus 98.6 3.1E-09 6.6E-14 105.4 -4.0 155 242-440 176-336 (410)
439 PRK12739 elongation factor G; 98.6 7.9E-08 1.7E-12 109.5 6.7 79 97-182 9-107 (691)
440 COG4917 EutP Ethanolamine util 98.6 5.4E-08 1.2E-12 83.8 4.0 139 97-267 2-144 (148)
441 PF09439 SRPRB: Signal recogni 98.6 1.4E-07 3.1E-12 88.6 7.1 77 97-182 4-86 (181)
442 smart00053 DYNc Dynamin, GTPas 98.6 1.6E-07 3.5E-12 92.6 7.8 25 96-120 26-50 (240)
443 COG1162 Predicted GTPases [Gen 98.6 1E-07 2.2E-12 95.6 6.3 105 42-155 111-230 (301)
444 PRK00007 elongation factor G; 98.5 1.4E-07 3E-12 107.5 8.0 135 97-254 11-171 (693)
445 cd01884 EF_Tu EF-Tu subfamily. 98.5 6.5E-08 1.4E-12 92.8 4.3 149 245-435 3-173 (195)
446 KOG0095|consensus 98.5 9.8E-08 2.1E-12 84.3 4.7 159 244-445 7-169 (213)
447 PRK00741 prfC peptide chain re 98.5 6E-07 1.3E-11 98.6 11.7 81 96-183 10-114 (526)
448 TIGR00993 3a0901s04IAP86 chlor 98.5 1E-07 2.2E-12 104.0 5.5 85 95-180 117-210 (763)
449 PF04548 AIG1: AIG1 family; I 98.5 1E-07 2.3E-12 92.7 4.8 85 97-181 1-93 (212)
450 cd01888 eIF2_gamma eIF2-gamma 98.5 7.3E-08 1.6E-12 93.1 3.4 56 384-439 137-193 (203)
451 KOG0093|consensus 98.5 1.5E-07 3.3E-12 83.1 5.0 158 242-441 19-179 (193)
452 PF03308 ArgK: ArgK protein; 98.5 3.4E-08 7.3E-13 96.7 0.4 149 92-267 25-228 (266)
453 KOG0081|consensus 98.5 1E-07 2.3E-12 85.1 3.4 162 247-447 12-183 (219)
454 PTZ00141 elongation factor 1- 98.5 2.4E-07 5.3E-12 99.9 7.0 162 94-266 5-222 (446)
455 PTZ00327 eukaryotic translatio 98.5 6.9E-07 1.5E-11 96.3 10.4 157 94-268 32-232 (460)
456 PLN00023 GTP-binding protein; 98.4 4.7E-07 1E-11 92.3 8.3 112 95-223 20-166 (334)
457 KOG0095|consensus 98.4 2.7E-07 5.8E-12 81.6 5.6 145 97-267 8-167 (213)
458 CHL00189 infB translation init 98.4 8.2E-08 1.8E-12 108.2 2.7 155 242-440 242-405 (742)
459 PF00009 GTP_EFTU: Elongation 98.4 3.6E-08 7.9E-13 94.0 -0.3 155 244-439 3-181 (188)
460 PF05049 IIGP: Interferon-indu 98.4 3.1E-07 6.7E-12 95.5 6.2 85 94-182 33-125 (376)
461 PRK05306 infB translation init 98.4 6.1E-08 1.3E-12 110.2 1.0 156 241-440 287-447 (787)
462 cd01883 EF1_alpha Eukaryotic e 98.4 1.3E-07 2.9E-12 92.4 2.9 54 384-437 137-197 (219)
463 PRK13351 elongation factor G; 98.4 1E-06 2.3E-11 100.5 10.5 80 97-183 9-108 (687)
464 PRK13768 GTPase; Provisional 98.4 1.3E-06 2.7E-11 87.4 9.5 120 141-268 97-246 (253)
465 COG1703 ArgK Putative periplas 98.4 1.1E-06 2.4E-11 87.2 8.8 158 88-268 43-253 (323)
466 cd01851 GBP Guanylate-binding 98.4 3.4E-07 7.3E-12 89.9 5.2 85 97-182 8-102 (224)
467 TIGR00475 selB selenocysteine- 98.4 2.2E-07 4.7E-12 103.5 4.2 154 246-441 2-162 (581)
468 TIGR00750 lao LAO/AO transport 98.4 1.2E-06 2.5E-11 89.9 9.2 105 140-267 126-236 (300)
469 TIGR00487 IF-2 translation ini 98.4 9.7E-08 2.1E-12 105.9 1.2 155 242-440 85-245 (587)
470 TIGR00491 aIF-2 translation in 98.4 5.5E-07 1.2E-11 99.9 7.1 28 243-270 3-30 (590)
471 KOG0079|consensus 98.4 6E-07 1.3E-11 79.4 5.8 149 98-267 10-167 (198)
472 cd01855 YqeH YqeH. YqeH is an 98.4 3.5E-07 7.5E-12 87.4 4.7 66 236-302 119-190 (190)
473 KOG1423|consensus 98.4 5.5E-08 1.2E-12 96.1 -0.9 59 243-303 71-131 (379)
474 cd01885 EF2 EF2 (for archaea a 98.4 6.6E-07 1.4E-11 87.6 6.6 78 98-182 2-107 (222)
475 COG0012 Predicted GTPase, prob 98.4 1.1E-07 2.4E-12 97.3 1.2 119 244-379 2-132 (372)
476 KOG1532|consensus 98.4 2.2E-06 4.8E-11 83.6 10.0 28 91-118 14-41 (366)
477 KOG0083|consensus 98.4 4.9E-08 1.1E-12 84.6 -1.2 153 249-444 2-159 (192)
478 KOG4252|consensus 98.3 3E-06 6.6E-11 77.3 9.8 159 244-445 20-181 (246)
479 cd04167 Snu114p Snu114p subfam 98.3 7.1E-07 1.5E-11 86.9 6.1 78 98-182 2-105 (213)
480 PTZ00132 GTP-binding nuclear p 98.3 1.4E-06 3.1E-11 84.7 8.2 157 244-444 9-167 (215)
481 PRK12317 elongation factor 1-a 98.3 2.1E-07 4.5E-12 100.3 1.9 52 385-438 140-198 (425)
482 cd01850 CDC_Septin CDC/Septin. 98.3 1.3E-06 2.9E-11 88.4 7.5 59 96-154 4-76 (276)
483 KOG0072|consensus 98.3 7.1E-07 1.5E-11 78.7 4.7 158 95-268 17-178 (182)
484 KOG1491|consensus 98.3 3.2E-07 6.9E-12 92.0 2.8 126 238-381 14-151 (391)
485 KOG0076|consensus 98.3 1E-06 2.2E-11 80.3 5.7 157 95-269 16-187 (197)
486 KOG0091|consensus 98.3 3.3E-06 7.2E-11 76.0 8.7 150 97-268 9-172 (213)
487 PRK05506 bifunctional sulfate 98.3 3.9E-07 8.5E-12 102.9 3.1 26 243-268 23-48 (632)
488 KOG0462|consensus 98.3 5.4E-06 1.2E-10 87.9 11.1 149 97-268 61-234 (650)
489 cd04165 GTPBP1_like GTPBP1-lik 98.3 3E-07 6.4E-12 90.2 1.5 26 246-271 1-26 (224)
490 PRK10512 selenocysteinyl-tRNA- 98.2 4.7E-07 1E-11 101.2 2.9 153 246-440 2-161 (614)
491 KOG0395|consensus 98.2 4.7E-06 1E-10 80.0 9.4 150 96-267 3-163 (196)
492 COG3596 Predicted GTPase [Gene 98.2 5.2E-07 1.1E-11 88.5 2.6 60 244-305 39-100 (296)
493 PF02824 TGS: TGS domain; Int 98.2 2.4E-07 5.3E-12 71.0 0.2 58 469-548 2-59 (60)
494 TIGR01393 lepA GTP-binding pro 98.2 6.3E-07 1.4E-11 100.0 3.5 56 383-441 121-176 (595)
495 cd01886 EF-G Elongation factor 98.2 1.1E-06 2.4E-11 88.6 4.8 56 372-430 105-160 (270)
496 PF00025 Arf: ADP-ribosylation 98.2 4.9E-07 1.1E-11 85.2 1.9 152 242-436 12-167 (175)
497 TIGR00503 prfC peptide chain r 98.2 2.2E-06 4.9E-11 94.2 7.2 81 95-182 10-114 (527)
498 PRK12740 elongation factor G; 98.2 3.9E-06 8.4E-11 95.7 9.2 75 102-183 1-95 (668)
499 KOG2486|consensus 98.2 1.6E-06 3.6E-11 84.9 5.2 57 95-152 135-194 (320)
500 KOG1145|consensus 98.2 6.6E-06 1.4E-10 87.2 9.9 151 93-266 150-313 (683)
No 1
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=3.7e-71 Score=566.98 Aligned_cols=343 Identities=49% Similarity=0.825 Sum_probs=307.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-------------------cCCeEEEEeCCCcccCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-------------------VPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-------------------~~~~i~l~DtpG~~~~~~ 156 (561)
+++||+||+||||||||||+|++..+.++++||+|++++.+.. .+.++.++||||++.+.+
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 3789999999999999999999999999999999999987621 224699999999998888
Q ss_pred cccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHH
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
.+.+++++|+.++++||+++||||+
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~------------------------------------------------------- 106 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRC------------------------------------------------------- 106 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeC-------------------------------------------------------
Confidence 8888999999999999999999964
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhC
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG 316 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~ 316 (561)
|.+..++++.|+.||.++++.+..||.+||..-++++++++.+.....
T Consensus 107 --------------------------------f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~ 154 (364)
T PRK09601 107 --------------------------------FEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGG 154 (364)
T ss_pred --------------------------------CccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Confidence 255667777789999999999999999999999999999999775433
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChh
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~ 396 (561)
.+....++ +++.+|.+++++ ..+.+...|+++|...|+.+.+++.||+|+|+|+.|.
T Consensus 155 ~~~~~~e~---------------------~~l~~v~~~Le~--~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~ 211 (364)
T PRK09601 155 DKEAKAEL---------------------ELLEKLLEHLEE--GKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDED 211 (364)
T ss_pred chhHHHHH---------------------HHHHHHHHHHHc--CCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCcc
Confidence 22222333 788899999987 7777777899999999999999999999999999976
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccchHHHHHHHHHcccCceeccccCC
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQGYKSLQLQYFFTAGQ 475 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~~t~~~ 475 (561)
|... .+..++++.+++... +.+++++||+.+..|.+|.++.+++|++++| .+++++++++.+|++|+||+|||+|+
T Consensus 212 ~~~~-~~~~~~~i~~~~~~~--~~~~i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~ 288 (364)
T PRK09601 212 DLAD-GNPYVKKVREIAAKE--GAEVVVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGP 288 (364)
T ss_pred cccc-ccHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCC
Confidence 6542 566788888887664 6789999999999999998888899999999 77899999999999999999999999
Q ss_pred CceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEecC
Q psy17315 476 DEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551 (561)
Q Consensus 476 ~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~~~ 551 (561)
+|+|||++++|+||+++||.|||||+||||||+|++|+||+++||+++||++|+.|.+||||+|||||||+||||+
T Consensus 289 ~evrawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~fn~ 364 (364)
T PRK09601 289 KEVRAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFNV 364 (364)
T ss_pred CeEEEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=6e-70 Score=564.51 Aligned_cols=353 Identities=61% Similarity=1.018 Sum_probs=309.8
Q ss_pred hhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-------------------cCCeEEEEeCC
Q psy17315 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-------------------VPAFLNVVDIA 149 (561)
Q Consensus 89 ~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-------------------~~~~i~l~Dtp 149 (561)
...+...+++||+||+||||||||||+|++..+.++++||||++++.+.. .+.++.++|||
T Consensus 14 ~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp 93 (390)
T PTZ00258 14 LLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA 93 (390)
T ss_pred hhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence 44555678999999999999999999999999999999999999988732 24569999999
Q ss_pred CcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCc
Q psy17315 150 GLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKT 229 (561)
Q Consensus 150 G~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~ 229 (561)
|++.+.+.+.+++++|++++++||+++||+|+
T Consensus 94 GLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~------------------------------------------------ 125 (390)
T PTZ00258 94 GLVKGASEGEGLGNAFLSHIRAVDGIYHVVRA------------------------------------------------ 125 (390)
T ss_pred CcCcCCcchhHHHHHHHHHHHHCCEEEEEEeC------------------------------------------------
Confidence 99988887788999999999999999999954
Q ss_pred cHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHH
Q psy17315 230 DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKI 309 (561)
Q Consensus 230 ~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l 309 (561)
|.+.+++++.|+.||.++++.+..+|.+||..-++++++++
T Consensus 126 ---------------------------------------f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~ 166 (390)
T PTZ00258 126 ---------------------------------------FEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDEL 166 (390)
T ss_pred ---------------------------------------CCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35667888889999999999999999999999999999998
Q ss_pred HHHHhh--CCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCce
Q psy17315 310 EKLVQR--GDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQ 387 (561)
Q Consensus 310 ~~~~~~--~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ 387 (561)
.+.... ..+....+. .++..|.+++++ ..+.+...|+++|...+..+.+++.||+
T Consensus 167 ~k~~~~~~~~~~~~~~~---------------------~~l~~v~~~L~~--~~~~~~~~~~~~e~~~l~~l~llt~KP~ 223 (390)
T PTZ00258 167 TKKRKKKKKKKEEKVEL---------------------DVLKKVLEWLEE--GKPVRDGDWTDKEIEILNEYQLLTAKPM 223 (390)
T ss_pred HHHhccccchhhHHHHH---------------------HHHHHHHHHHHc--CCccccCCCCHHHHHHHHHhchhhcCCE
Confidence 876311 111111122 778888999988 7777778999999999999999999999
Q ss_pred EEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCC-CHHHHHHHHHHhc-ccchHHHHHHHHHccc
Q psy17315 388 IYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDM-PDDERQRYLDEQK-ATSVLDKIITQGYKSL 465 (561)
Q Consensus 388 iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L-~~~~~~~~~~~~~-~~~~l~~li~~~~~~l 465 (561)
|||+|+.+.|.....+..++.+.+++.... +.+++++||+.+..|.+| .++++.+|++++| .+++++++++.+|++|
T Consensus 224 iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~-~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL 302 (390)
T PTZ00258 224 IYLVNMSEKDFIRQKNKWLAKIKEWVGEKG-GGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLL 302 (390)
T ss_pred EEEEECchhhhcccchHHHHHHHHHHHhcC-CCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHh
Confidence 999999965542224557788888776531 367999999999999999 9899999999999 7789999999999999
Q ss_pred CceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEE
Q psy17315 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDII 545 (561)
Q Consensus 466 ~li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~ 545 (561)
+||+|||+||+|+|||++++|+||+++|+.|||||+||||||+||+|+||+++||+++||++|+.|++||||+|+|||||
T Consensus 303 ~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi 382 (390)
T PTZ00258 303 NLIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDII 382 (390)
T ss_pred CCEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC
Q psy17315 546 FFKFNAG 552 (561)
Q Consensus 546 ~~~~~~~ 552 (561)
+||||++
T Consensus 383 ~f~fnv~ 389 (390)
T PTZ00258 383 FFKFNVS 389 (390)
T ss_pred EEEecCC
Confidence 9999996
No 3
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-68 Score=532.31 Aligned_cols=343 Identities=50% Similarity=0.828 Sum_probs=303.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--------------------cccCCeEEEEeCCCcccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--------------------NKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--------------------~~~~~~i~l~DtpG~~~~~ 155 (561)
.+++||||+||||||||||+||...+.+++|||||.+|+.+ ...+..+.++|.+|+++++
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 57899999999999999999999999999999999999998 1134569999999999999
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKK 235 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~ 235 (561)
++|+|++++||++||++|+|+|||
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVV-------------------------------------------------------- 105 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVV-------------------------------------------------------- 105 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEE--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhh
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQR 315 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~ 315 (561)
++|.+.++.+++|.+||++|+++++.||++||...++++|+++.+....
T Consensus 106 -------------------------------r~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~ 154 (372)
T COG0012 106 -------------------------------RCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKA 154 (372)
T ss_pred -------------------------------EecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557788899999999999999999999999999999999999988765
Q ss_pred CC---ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCccc---CCCCCHHHHHHHHhhhhccCCceEE
Q psy17315 316 GD---KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHAR---YGDWSNADIEHLNKLNLLTAKTQIY 389 (561)
Q Consensus 316 ~~---~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~---~~~~~~~e~~~l~~~~~l~~kP~ii 389 (561)
+. +....++ ..+..+...+.+ ..+.+ ...|++++...+..+.+++.||+||
T Consensus 155 ~~~~~k~~~~~l---------------------~~l~~~~~~l~~--~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~ly 211 (372)
T COG0012 155 GKKLDKELKEEL---------------------SLLGKLEEHLEE--GKPARGLDLSKWSEEDLEALASLNLLTAKPMLY 211 (372)
T ss_pred ccchHHHHHHHH---------------------HHHHhHHHHHHh--hhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEE
Confidence 43 2222222 555555555555 44433 3469999999999999999999999
Q ss_pred EecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH-HHHHHHHHHhc-ccchHHHHHHHHHcccCc
Q psy17315 390 LVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD-DERQRYLDEQK-ATSVLDKIITQGYKSLQL 467 (561)
Q Consensus 390 v~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~-~~~~~~~~~~~-~~~~l~~li~~~~~~l~l 467 (561)
|+||.|.+... .+.++++++++.... +.++||+||+.+..|.+|.+ ++..+|+...+ .++++++++++.|+.|||
T Consensus 212 vaN~~e~~~~~-~n~~~~~i~~~~~~~--~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl 288 (372)
T COG0012 212 VANVSEDDLAN-LNEYVKRLKELAAKE--NAEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGL 288 (372)
T ss_pred EEECCcccccc-hhHHHHHHHHHhhhc--CCcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccch
Confidence 99999776543 255688888887654 67899999999999999987 88888999988 568999999999999999
Q ss_pred eeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 468 QYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 468 i~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
++|||.|++|+|+|++++|++|+++||.||||+.+|||+|+|++|+||+.++|+..|+++|+.|.+||||+|||||||+|
T Consensus 289 ~~~ft~g~~evrawti~~g~kap~aaG~Ih~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 289 QTYFTAGVKEVRAWTIKDGSKAPDAAGVIHPDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHF 368 (372)
T ss_pred hHHHhhcCCeEEEEEeccCCcccccCCccccchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q psy17315 548 KFNA 551 (561)
Q Consensus 548 ~~~~ 551 (561)
|||+
T Consensus 369 k~~~ 372 (372)
T COG0012 369 KFNV 372 (372)
T ss_pred EecC
Confidence 9985
No 4
>KOG1491|consensus
Probab=100.00 E-value=4.7e-67 Score=513.18 Aligned_cols=364 Identities=63% Similarity=0.989 Sum_probs=325.9
Q ss_pred hhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-------------------cccCCeEE
Q psy17315 84 GEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-------------------NKVPAFLN 144 (561)
Q Consensus 84 ~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-------------------~~~~~~i~ 144 (561)
.++....+|.+..+++||||+|||||||+||+||+..+.++++||||.+|+.+ ...+..+.
T Consensus 8 ~~~~~~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~ 87 (391)
T KOG1491|consen 8 EEKKVLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLT 87 (391)
T ss_pred ccccccccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEE
Confidence 34456788888899999999999999999999999998899999999999887 22456799
Q ss_pred EEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcC
Q psy17315 145 VVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKM 224 (561)
Q Consensus 145 l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~ 224 (561)
++|++|++++++.++|++++||+++|.+|.|+|||
T Consensus 88 v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVV--------------------------------------------- 122 (391)
T KOG1491|consen 88 VYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVV--------------------------------------------- 122 (391)
T ss_pred EEeecccccCcccCcCchHHHHHhhhhccceeEEE---------------------------------------------
Confidence 99999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH
Q psy17315 225 GPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 225 ~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
+.|.+..+.|+.|.+||++|++++..||++||..-+++
T Consensus 123 ------------------------------------------r~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k 160 (391)
T KOG1491|consen 123 ------------------------------------------RAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEK 160 (391)
T ss_pred ------------------------------------------EecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHH
Confidence 45577778899999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCc-ccCCCCCHHHHHHHHhhhhcc
Q psy17315 305 EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRH-ARYGDWSNADIEHLNKLNLLT 383 (561)
Q Consensus 305 ~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~-~~~~~~~~~e~~~l~~~~~l~ 383 (561)
.++++.+...+..... +..+.. .+.+++..|..++.+. .++ .....|++++++++..+.+++
T Consensus 161 ~~e~~~k~~~~~~~~~--~~~q~k--------------~e~~~l~~v~~~ll~~-kk~~~~~~~W~d~eieiln~~~lLt 223 (391)
T KOG1491|consen 161 RLEKLEKKHKRTKSNL--ETKQLK--------------FEYGLLEKVKEKLLDG-KKPVRPKEKWNDEEIEILNKLFLLT 223 (391)
T ss_pred HHHHHhhhhhcccCcH--HHHHHH--------------HHHhHHHHHHHHHhcc-CCCCcchhhcCHHHHHHHHHhhhhh
Confidence 9999998887655432 111111 0127788888887762 232 334689999999999999999
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHc
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYK 463 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~ 463 (561)
.||+||++|++|.|..+.++..+..+.+|.+...|+..++++|+..+..+..+.++++.+|++..+..+.++.+|...|.
T Consensus 224 ~kP~Vyl~N~se~dy~r~knk~l~~i~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~ 303 (391)
T KOG1491|consen 224 AKPTVYLLNLSEHDYARKKNKKLPKIKEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYS 303 (391)
T ss_pred cCceEEEEecCcchhhhHHHHHHhhhhhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHH
Confidence 99999999999998888788889999999988778899999999999999999999999999999877999999999999
Q ss_pred ccCceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCC
Q psy17315 464 SLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGD 543 (561)
Q Consensus 464 ~l~li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~d 543 (561)
.|+|++|||+|++||++|+|++|++|+++|+.||+||.++||.|+|+.|+||+.+||+.+||.+|+.|++||+|+|+|||
T Consensus 304 ~L~li~fFt~G~~eV~~WtIr~gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGD 383 (391)
T KOG1491|consen 304 ALNLIVFFTCGEDEVRAWTIRKGTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGD 383 (391)
T ss_pred hhCceEEEeeCCchheeeehhhccccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC
Q psy17315 544 IIFFKFNA 551 (561)
Q Consensus 544 i~~~~~~~ 551 (561)
||+||||.
T Consensus 384 Ii~FK~~~ 391 (391)
T KOG1491|consen 384 IIFFKFNP 391 (391)
T ss_pred EEEEeecC
Confidence 99999984
No 5
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=1.2e-66 Score=533.67 Aligned_cols=344 Identities=42% Similarity=0.642 Sum_probs=302.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCcccc-------------------ccCCeEEEEeCCCcccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNENN-------------------KVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~~-------------------~~~~~i~l~DtpG~~~~~ 155 (561)
++++||||+||+|||||||+||+... .++++|+||.+++.+. ..+..+.++|.||++.+.
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 37899999999999999999999997 9999999999998871 123579999999999999
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKK 235 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~ 235 (561)
+.+.+++++|+++++++|+++||+
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVv-------------------------------------------------------- 105 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVV-------------------------------------------------------- 105 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEE--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhh
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQR 315 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~ 315 (561)
+.|.+.+++|+.|..||++++..++.++.++|..-++++++++.+....
T Consensus 106 -------------------------------r~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~ 154 (368)
T TIGR00092 106 -------------------------------RCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEG 154 (368)
T ss_pred -------------------------------eCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 4457778888889899999999999999999999999999998876542
Q ss_pred CCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCCh
Q psy17315 316 GDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSA 395 (561)
Q Consensus 316 ~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D 395 (561)
. +....+. .++..+..++++ .++.+...+++++..+++.+.+++.||+++|+|-.+
T Consensus 155 ~-k~~~~e~---------------------~ll~~~~~~Le~--~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e 210 (368)
T TIGR00092 155 G-KDKKEEL---------------------LLLEIILPLLNG--GQMARHVDLSKEELILIKSLNLLTKKPIILIANVSE 210 (368)
T ss_pred c-hhhHHHH---------------------HHHHHHHHHHhC--CCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCH
Confidence 1 2222233 788888888887 788887788999999999999999999999999875
Q ss_pred hhhhhhccchHHHHHHHHHhcCC-CCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccc-hHHHHHHHHHcccCceeccc
Q psy17315 396 KDYIKKKNKWLPKIKEWVDANDP-GATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATS-VLDKIITQGYKSLQLQYFFT 472 (561)
Q Consensus 396 ~d~~~~~~~~~~~l~~~~~~~~~-~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~-~l~~li~~~~~~l~li~~~t 472 (561)
.+..++.+.+...++ |.....| +..++++||+.+..+.+|.++++.+|++.++ .++ +++++++..|++|+|++|||
T Consensus 211 ~~~~~~n~~~~~~~~-~~~~~~~~~~~~~~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT 289 (368)
T TIGR00092 211 DYLRNLNNNYLLIVE-WIAAYSKGDPKVVFVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFT 289 (368)
T ss_pred HHhhhcccHHHHHHH-HHhhcCcCCCeEEEeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEc
Confidence 443221133444444 7666322 4678999999999999999999999999999 777 99999999999999999999
Q ss_pred cCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEecC
Q psy17315 473 AGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551 (561)
Q Consensus 473 ~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~~~ 551 (561)
+|++|+|||++++|+||++|||.|||||+||||+|||++|+||+++||+++||++|+.|++||+|+|||||||+||||+
T Consensus 290 ~g~~EvRaWti~~G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~fnv 368 (368)
T TIGR00092 290 GGKEEVRAWTRKGGWAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFAFNV 368 (368)
T ss_pred CCCceeEEeecCCCCchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=3.7e-48 Score=406.71 Aligned_cols=330 Identities=28% Similarity=0.412 Sum_probs=250.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--------------------------ccCCeEEEEeCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--------------------------KVPAFLNVVDIA 149 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--------------------------~~~~~i~l~Dtp 149 (561)
+++||+||+||||||||||+|++....++++||+|++++.+. ..+..++++|||
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 368999999999999999999999888899999999998863 122468899999
Q ss_pred CcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCc
Q psy17315 150 GLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKT 229 (561)
Q Consensus 150 G~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~ 229 (561)
|++.+.+.+.+++++|++++++||+++||+|+..
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~---------------------------------------------- 114 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG---------------------------------------------- 114 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC----------------------------------------------
Confidence 9999888888999999999999999999997531
Q ss_pred cHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHH
Q psy17315 230 DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKI 309 (561)
Q Consensus 230 ~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l 309 (561)
..-..+.+.+ .|..||.++++++..||.+||..-+++++.++
T Consensus 115 -------------------------------------~~~~~~~~~~-~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~ 156 (396)
T PRK09602 115 -------------------------------------STDEEGNPVE-PGSHDPVEDIKFLEEELDMWIYGILEKNWEKF 156 (396)
T ss_pred -------------------------------------CcccCCcccC-CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0001122233 57889999999999999999999999998888
Q ss_pred HHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEE
Q psy17315 310 EKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIY 389 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ii 389 (561)
.+....+......+.+... . .-++.. ..|.+++++. ..+.+...|++++...+..+.+++.||+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~l-~--------~~~~~e----~~v~~~L~~~-g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~ 222 (396)
T PRK09602 157 SRKAQAEKFDIEEALAEQL-S--------GLGINE----EHVKEALREL-GLPEDPSKWTDEDLLELARELRKISKPMVI 222 (396)
T ss_pred HHHHhcCCcchHHHHHHHH-h--------hhccCH----HHHHHHHHHc-CCcCcccCCCHHHHHHHHHhhhhcCCCEEE
Confidence 7665432211111110000 0 001111 3455666532 455666789999999999888888899999
Q ss_pred EecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCC---------------------CCHHHH------H
Q psy17315 390 LVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVD---------------------MPDDER------Q 442 (561)
Q Consensus 390 v~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~---------------------L~~~~~------~ 442 (561)
|+||+|. .. .+..+..+.++ ++..++++||+.|.++.+ +.++.. .
T Consensus 223 VlNK~D~--~~-~~~~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IR 294 (396)
T PRK09602 223 AANKADL--PP-AEENIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIR 294 (396)
T ss_pred EEEchhc--cc-chHHHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHH
Confidence 9999953 22 22234444443 356799999999999877 433321 2
Q ss_pred HHHHHhcccchHHHHH-HHHHcccCceeccccCC----------CceeccccCCCCCccccccccccccCCCeEEEEEec
Q psy17315 443 RYLDEQKATSVLDKII-TQGYKSLQLQYFFTAGQ----------DEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMH 511 (561)
Q Consensus 443 ~~~~~~~~~~~l~~li-~~~~~~l~li~~~t~~~----------~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~ 511 (561)
+|+..++. +++.+++ +.+|+.|+|++|||+++ .+.|+|++++|+||+|+|+.|||||+++||||+.
T Consensus 295 k~l~~~g~-~~~~~~i~~~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~-- 371 (396)
T PRK09602 295 EVLKKYGG-TGVQEAINTAVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAID-- 371 (396)
T ss_pred HHHHHhCC-chHHHHHHHHHHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhc--
Confidence 67777776 5677777 99999999999999875 4567999999999999999999999999999992
Q ss_pred hhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEe
Q psy17315 512 FDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKF 549 (561)
Q Consensus 512 ~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~ 549 (561)
|+ +.|++|++|+|+|||||+|.-
T Consensus 372 ------------~~---~~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 372 ------------AR---TKRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred ------------cc---CCcccCCCcEecCCCEEEEEe
Confidence 22 579999999999999999974
No 7
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=7.9e-39 Score=313.54 Aligned_cols=296 Identities=24% Similarity=0.306 Sum_probs=203.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...+|++||+||||||||+|+||+.+..++.+||||..+..++ +.+.+|+++|+||++.+++.+.+.+.++++.+|+|
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 3468999999999999999999999999999999999999985 46679999999999999999999999999999999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEcc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~ 252 (561)
|+|++|+|+.. ...+++.+..+|...+.. +|| ..+.+.+--+
T Consensus 142 DlIiiVld~~~------------~~~~~~~i~~ELe~~GIr-lnk-------------------------~~p~V~I~kk 183 (365)
T COG1163 142 DLIIIVLDVFE------------DPHHRDIIERELEDVGIR-LNK-------------------------RPPDVTIKKK 183 (365)
T ss_pred CEEEEEEecCC------------ChhHHHHHHHHHHhcCeE-ecC-------------------------CCCceEEEEe
Confidence 99999997641 122244555555443211 111 0011111111
Q ss_pred CCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh-HhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhh
Q psy17315 253 PNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN-EELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFS 331 (561)
Q Consensus 253 ~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~-~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 331 (561)
...| +.+.+ .+++=.|..-+ ..+-+.+
T Consensus 184 ~~gG------------------------------I~i~~t~~l~~~d~~~i----r~iL~Ey------------------ 211 (365)
T COG1163 184 ESGG------------------------------IRINGTGPLTHLDEDTV----RAILREY------------------ 211 (365)
T ss_pred ccCC------------------------------EEEecccccccCCHHHH----HHHHHHh------------------
Confidence 1111 11111 11222332222 1111121
Q ss_pred hhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHH
Q psy17315 332 FIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKE 411 (561)
Q Consensus 332 di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~ 411 (561)
.|.++++.. +.....++-+..+... ..++|+|+|+||+ |+.. .+.++.+.+
T Consensus 212 ---------~I~nA~V~I--------------r~dvTlDd~id~l~~n--rvY~p~l~v~NKi--D~~~--~e~~~~l~~ 262 (365)
T COG1163 212 ---------RIHNADVLI--------------REDVTLDDLIDALEGN--RVYKPALYVVNKI--DLPG--LEELERLAR 262 (365)
T ss_pred ---------CcccceEEE--------------ecCCcHHHHHHHHhhc--ceeeeeEEEEecc--cccC--HHHHHHHHh
Confidence 111112211 0011112223333333 2589999999999 4432 223333333
Q ss_pred HHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCceeccccCCCce----eccccCCCC
Q psy17315 412 WVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEV----KAWTIQKGT 487 (561)
Q Consensus 412 ~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~~t~~~~ev----~a~~~~~g~ 487 (561)
..+.+++||+.+.|+++| .+.+|+.|+|+++||..+++. ++..+++|+
T Consensus 263 -------~~~~v~isa~~~~nld~L---------------------~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~Gs 314 (365)
T COG1163 263 -------KPNSVPISAKKGINLDEL---------------------KERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGS 314 (365)
T ss_pred -------ccceEEEecccCCCHHHH---------------------HHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCC
Confidence 236899999999997666 334799999999999988876 788999999
Q ss_pred CccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEe
Q psy17315 488 KAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKF 549 (561)
Q Consensus 488 ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~ 549 (561)
|+.|+|.+||+||.+.|.||.||+.+- +..+|++|.+|+|+|||||+|+-
T Consensus 315 TV~Dvc~~IH~~l~~~FryA~VWGkSv------------k~~~QrVG~dHvLeD~DIV~I~~ 364 (365)
T COG1163 315 TVGDVCRKIHRDLVENFRYARVWGKSV------------KHPGQRVGLDHVLEDEDIVEIHA 364 (365)
T ss_pred cHHHHHHHHHHHHHHhcceEEEeccCC------------CCCccccCcCcCccCCCeEEEee
Confidence 999999999999999999999999973 55679999999999999999873
No 8
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=1.2e-36 Score=303.51 Aligned_cols=254 Identities=50% Similarity=0.800 Sum_probs=214.8
Q ss_pred EEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-------------------cCCeEEEEeCCCcccCCcccc
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-------------------VPAFLNVVDIAGLVKGAAEGQ 159 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-------------------~~~~i~l~DtpG~~~~~~~~~ 159 (561)
||+||+||||||||||+||+....++++||+|++++.+.. .+.++.++||||++.+.+.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999999999999999999988621 123599999999999888888
Q ss_pred ccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhh
Q psy17315 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLG 239 (561)
Q Consensus 160 ~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~ 239 (561)
+++++|+.++++||+++||||+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~---------------------------------------------------------- 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC---------------------------------------------------------- 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC----------------------------------------------------------
Confidence 9999999999999999999953
Q ss_pred hcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 240 RVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 240 ~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
|.+..++++.|.+||++|+.++..|+.+||..-++++++++.+...+..+.
T Consensus 103 -----------------------------f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~~~ 153 (274)
T cd01900 103 -----------------------------FEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGDKE 153 (274)
T ss_pred -----------------------------cCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHH
Confidence 355667777899999999999999999999999999999988775433222
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
...++ .++.+|.+++++ ..+.+...|+++|.+.|+.+.+++.||+++|+|+.|.|..
T Consensus 154 ~~~e~---------------------~~l~~~~~~L~~--~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~ 210 (274)
T cd01900 154 AKAEL---------------------ELLEKIKEHLEE--GKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLA 210 (274)
T ss_pred HHHHH---------------------HHHHHHHHHHHc--CCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhc
Confidence 22222 788889999988 7777778999999999999999999999999999976654
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccchHHHHHHHHHccc
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQGYKSL 465 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~~l~~li~~~~~~l 465 (561)
. .+....++..+.... +.+++++||+.+..|.+|.++++++|++.+| .+++++++++.+|+.|
T Consensus 211 ~-~~~~~~~~~~~~~~~--~~~~i~~sa~~E~eL~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 211 N-GNNKVLKVREIAAKE--GAEVIPISAKIEAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred c-ccHHHHHHHHHHhcC--CCeEEEeeHHHHHHHHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 2 344455565555442 6789999999999999999999999999999 7789999999999875
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=4.5e-37 Score=316.44 Aligned_cols=322 Identities=22% Similarity=0.262 Sum_probs=219.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc--cccCCeEEEEeCCCcccCC--cccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGA--AEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~--~~~~~~~~~~l~~i~~ 171 (561)
..|+|||.||||||||||+|+++. +.|+++||+|+|...+ .+.+..+.++||+|+.... .-...+..+.+.++.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 569999999999999999999998 8999999999999876 3567789999999998644 2234566777889999
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcC---------CCC-----CccHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKM---------GPK-----KTDEGE 233 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~---------~~~-----~~~~~~ 233 (561)
||++|+|||+.. ....-| .+.+.|+...++ |+||+|..+.. +++ ++.|..
T Consensus 84 ADvilfvVD~~~------------Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGRE------------GITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCC------------CCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhcc
Confidence 999999999752 011112 233445544344 89999997442 221 233322
Q ss_pred -----HHHHhhhc---------C--CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhh
Q psy17315 234 -----KKMLLGRV---------G--TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELR 295 (561)
Q Consensus 234 -----l~~l~~~~---------~--~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~ 295 (561)
++.+...+ . ...+++++|+||+|||+|+|+|.++ +...++..+||| |++. .+++.+..+.
T Consensus 152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilge--eR~Iv~~~aGTTRD~I~~~~e~~~~~~~ 229 (444)
T COG1160 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGE--ERVIVSDIAGTTRDSIDIEFERDGRKYV 229 (444)
T ss_pred CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccC--ceEEecCCCCccccceeeeEEECCeEEE
Confidence 33333331 1 2468999999999999999999998 888899999997 6663 4566678899
Q ss_pred cccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH
Q psy17315 296 LKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH 375 (561)
Q Consensus 296 l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~ 375 (561)
++||+|++++-. +.. . .|..+.+ .....|.+++++..|+|+. ...+++|..+
T Consensus 230 liDTAGiRrk~k-i~e--------~-~E~~Sv~--------rt~~aI~~a~vvllviDa~----------~~~~~qD~~i 281 (444)
T COG1160 230 LIDTAGIRRKGK-ITE--------S-VEKYSVA--------RTLKAIERADVVLLVIDAT----------EGISEQDLRI 281 (444)
T ss_pred EEECCCCCcccc-ccc--------c-eEEEeeh--------hhHhHHhhcCEEEEEEECC----------CCchHHHHHH
Confidence 999999865311 110 0 0111111 0112233344444333321 2456667666
Q ss_pred HHhhhhccCCceEEEecCChhhhhhhccchHH----HHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--
Q psy17315 376 LNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLP----KIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-- 449 (561)
Q Consensus 376 l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~----~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-- 449 (561)
...... .++++++|+||| |+++..+...+ +++..+... .+.|+++|||+++.|+.+|.+...+.|.....
T Consensus 282 a~~i~~-~g~~~vIvvNKW--Dl~~~~~~~~~~~k~~i~~~l~~l-~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri 357 (444)
T COG1160 282 AGLIEE-AGRGIVIVVNKW--DLVEEDEATMEEFKKKLRRKLPFL-DFAPIVFISALTGQGLDKLFEAIKEIYECATRRI 357 (444)
T ss_pred HHHHHH-cCCCeEEEEEcc--ccCCchhhHHHHHHHHHHHHhccc-cCCeEEEEEecCCCChHHHHHHHHHHHHHhcccc
Confidence 554443 799999999999 44432222333 333333222 37899999999999999999888887765533
Q ss_pred ccchHHHHHHHHHcc
Q psy17315 450 ATSVLDKIITQGYKS 464 (561)
Q Consensus 450 ~~~~l~~li~~~~~~ 464 (561)
+++.+++.++.+...
T Consensus 358 ~Ts~LN~~l~~a~~~ 372 (444)
T COG1160 358 STSLLNRVLEDAVAK 372 (444)
T ss_pred CHHHHHHHHHHHHHh
Confidence 889999998887654
No 10
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=100.00 E-value=2.6e-36 Score=240.04 Aligned_cols=84 Identities=68% Similarity=1.097 Sum_probs=76.4
Q ss_pred ceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEE
Q psy17315 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIF 546 (561)
Q Consensus 467 li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~ 546 (561)
|++|||+||+|+|||++++|+||+++||.|||||+||||+|||++|+||+++||+++||++|+.|++||||+|||||||+
T Consensus 1 L~tffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~ 80 (84)
T PF06071_consen 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIH 80 (84)
T ss_dssp EEEEEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEE
T ss_pred CceEEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q psy17315 547 FKFN 550 (561)
Q Consensus 547 ~~~~ 550 (561)
|+||
T Consensus 81 f~fN 84 (84)
T PF06071_consen 81 FRFN 84 (84)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 9998
No 11
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=100.00 E-value=2.9e-35 Score=232.20 Aligned_cols=83 Identities=75% Similarity=1.193 Sum_probs=82.1
Q ss_pred ceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEE
Q psy17315 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIF 546 (561)
Q Consensus 467 li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~ 546 (561)
|++|||+|++|+|||++++|+||+++||.|||||+||||+|||++|+||+++||+++||++|+.|.+||+|+|+||||++
T Consensus 1 L~tffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~ 80 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIF 80 (83)
T ss_pred CccEECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q psy17315 547 FKF 549 (561)
Q Consensus 547 ~~~ 549 (561)
|+|
T Consensus 81 f~f 83 (83)
T cd04867 81 FKF 83 (83)
T ss_pred EEC
Confidence 998
No 12
>KOG1486|consensus
Probab=99.96 E-value=1.4e-29 Score=239.20 Aligned_cols=295 Identities=19% Similarity=0.281 Sum_probs=206.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...+|+++|+|.||||||+..+|+.+...+.+.|+|..-..+. +.+..|+++|.||++++++++.+.+++..+..|.|
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 3468999999999999999999999988899999999887774 45678999999999999999999999999999999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEcc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~ 252 (561)
|+|++|+|++- ...+-..+..+|...+.+ +|| ..+.|.+--+
T Consensus 141 DlilMvLDatk------------~e~qr~~le~ELe~vGiR-LNk-------------------------~~Pniy~k~k 182 (364)
T KOG1486|consen 141 DLILMVLDATK------------SEDQREILEKELEAVGIR-LNK-------------------------RKPNIYFKKK 182 (364)
T ss_pred cEEEEEecCCc------------chhHHHHHHHHHHHhcee-ccC-------------------------CCCCeEEEee
Confidence 99999999862 122233455555554322 222 2233433333
Q ss_pred CCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhh
Q psy17315 253 PNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSF 332 (561)
Q Consensus 253 ~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~d 332 (561)
.+.|+ ++ +++.|...+ | ++.+..+-..+
T Consensus 183 k~gGi-----------------~f--~~T~~lT~~----------~----ek~i~~ILhey------------------- 210 (364)
T KOG1486|consen 183 KTGGI-----------------SF--NTTVPLTHC----------D----EKLIYTILHEY------------------- 210 (364)
T ss_pred ccCCe-----------------EE--eeeeccccc----------c----HHHHHHHHHHH-------------------
Confidence 33332 22 122222111 1 11111111121
Q ss_pred hhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHH
Q psy17315 333 IYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEW 412 (561)
Q Consensus 333 i~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~ 412 (561)
.|.+++++. +.....++-+.++.... ...|+++|.||+|. + .++++...
T Consensus 211 --------kI~Naevl~--------------ReD~t~DdfIDvi~gnr--~Y~~ClYvYnKID~--v-----s~eevdrl 259 (364)
T KOG1486|consen 211 --------KIHNAEVLF--------------REDCTVDDFIDVIEGNR--VYIKCLYVYNKIDQ--V-----SIEEVDRL 259 (364)
T ss_pred --------eeccceEEE--------------ecCCChHHHHHHHhccc--eEEEEEEEeeccce--e-----cHHHHHHH
Confidence 122222211 11122233344454333 47899999999943 3 24455554
Q ss_pred HHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCceeccccCCCce----eccccCCCCC
Q psy17315 413 VDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEV----KAWTIQKGTK 488 (561)
Q Consensus 413 ~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~~t~~~~ev----~a~~~~~g~t 488 (561)
++. ++.+.||+....|++ .+++.+|+.|+|.++||..+++. ++..+++|+|
T Consensus 260 Ar~----PnsvViSC~m~lnld---------------------~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~t 314 (364)
T KOG1486|consen 260 ARQ----PNSVVISCNMKLNLD---------------------RLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGST 314 (364)
T ss_pred hcC----CCcEEEEeccccCHH---------------------HHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCc
Confidence 432 345778988777744 44566899999999999987765 8899999999
Q ss_pred ccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 489 APQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 489 a~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
..++|..||.+|...|.||-||+.+. +..+|++|-.|.++|+|||.+
T Consensus 315 ve~~C~~iHr~l~~qfkyAlVWGtSa------------khsPQrvgl~h~~~dEdvvqi 361 (364)
T KOG1486|consen 315 VEDVCHRIHRTLAAQFKYALVWGTSA------------KHSPQRVGLGHTLEDEDVVQI 361 (364)
T ss_pred HHHHHHHHHHHHHHhhceeeEecccc------------ccCcceeccccccccccceee
Confidence 99999999999999999999999985 788999999999999999986
No 13
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.95 E-value=1.1e-27 Score=244.82 Aligned_cols=242 Identities=26% Similarity=0.402 Sum_probs=176.4
Q ss_pred EEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--------------------------cCCeEEEEeCCCcc
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--------------------------VPAFLNVVDIAGLV 152 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--------------------------~~~~i~l~DtpG~~ 152 (561)
|++||+||||||||||+||+....++++||+|.+++.+.. ....++++||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999998899999999999987611 12368999999999
Q ss_pred cCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHH
Q psy17315 153 KGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEG 232 (561)
Q Consensus 153 ~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~ 232 (561)
++.+.+.+++++|++++++||+++||+|...
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~------------------------------------------------- 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG------------------------------------------------- 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC-------------------------------------------------
Confidence 8888788899999999999999999997541
Q ss_pred HHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHH
Q psy17315 233 EKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKL 312 (561)
Q Consensus 233 ~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~ 312 (561)
.-....++++.|..||.++++++..||.+||..-+++++.++.+.
T Consensus 112 -----------------------------------~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~ 156 (318)
T cd01899 112 -----------------------------------GTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRK 156 (318)
T ss_pred -----------------------------------CcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 002334567778899999999999999999999999999998876
Q ss_pred HhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEec
Q psy17315 313 VQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVN 392 (561)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~N 392 (561)
...+........ ...+ ..-++.+ ..|...++.. ..+.+...|++.+.+.+....+++.+|+|+|+|
T Consensus 157 ~~~~~~~~~~~~-~~~~--------~~~~~~~----~~v~~~L~~~-~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlN 222 (318)
T cd01899 157 ADAEKTDIVEAL-SEQL--------SGFGVNE----KDVIEALEEL-ELPEDLSKWTDEDLLRLARALRKRSKPMVIAAN 222 (318)
T ss_pred HhcCCccHHHHH-HHHH--------hhccccH----HHHHHHHHhC-CCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 653322211111 0000 0001122 2334455441 324555689999999988888888999999999
Q ss_pred CChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 393 LSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 393 K~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
|+| +.. .+...+.+.. ..++.+++++||+.|.++.+|.++...+|+
T Consensus 223 K~D--l~~-~~~~~~~l~~----~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 223 KAD--IPD-AENNISKLRL----KYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred HHH--ccC-hHHHHHHHHh----hCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 995 332 2223333322 123578999999999999998765555554
No 14
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.95 E-value=5.9e-28 Score=261.84 Aligned_cols=326 Identities=20% Similarity=0.219 Sum_probs=192.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc-cccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i 169 (561)
....+|++||.||||||||+|+|++.. ..+++.||+|++..... ..+..+.++||||+...... ...+......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 445789999999999999999999877 67889999999876642 23456899999998632211 112223334567
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcC---------CCC----------
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKM---------GPK---------- 227 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~---------~~~---------- 227 (561)
+.||++++|+|++..... . -..+.+.+.....+ |+||+|+.+.. ++.
T Consensus 116 ~~aD~il~VvD~~~~~s~--------~---~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g 184 (472)
T PRK03003 116 RTADAVLFVVDATVGATA--------T---DEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHG 184 (472)
T ss_pred HhCCEEEEEEECCCCCCH--------H---HHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCC
Confidence 899999999998732110 0 01122233333333 89999986421 110
Q ss_pred CccHHHHHHHhhhc----------CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhhHhhh
Q psy17315 228 KTDEGEKKMLLGRV----------GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIINEELR 295 (561)
Q Consensus 228 ~~~~~~l~~l~~~~----------~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~~el~ 295 (561)
......++.+.... ....++++.|.+|+|||+|+|.+++..+ ..++..+||+ |+... +...+..+.
T Consensus 185 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~--~~~s~~~gtT~d~~~~~~~~~~~~~~ 262 (472)
T PRK03003 185 RGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEER--SVVDDVAGTTVDPVDSLIELGGKTWR 262 (472)
T ss_pred CCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCccCCcceEEEEECCEEEE
Confidence 11111222222221 1246899999999999999999998742 3344555665 55432 334455678
Q ss_pred cccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH
Q psy17315 296 LKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH 375 (561)
Q Consensus 296 l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~ 375 (561)
+|||||+++....... .++...+ .....+..++++..|++.. ...+..+...
T Consensus 263 l~DTaG~~~~~~~~~~----------~e~~~~~--------~~~~~i~~ad~vilV~Da~----------~~~s~~~~~~ 314 (472)
T PRK03003 263 FVDTAGLRRRVKQASG----------HEYYASL--------RTHAAIEAAEVAVVLIDAS----------EPISEQDQRV 314 (472)
T ss_pred EEECCCccccccccch----------HHHHHHH--------HHHHHHhcCCEEEEEEeCC----------CCCCHHHHHH
Confidence 9999997532111000 0000000 0000112223333332211 1234445555
Q ss_pred HHhhhhccCCceEEEecCChhhhhhhc--cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--cc
Q psy17315 376 LNKLNLLTAKTQIYLVNLSAKDYIKKK--NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--AT 451 (561)
Q Consensus 376 l~~~~~l~~kP~iiv~NK~D~d~~~~~--~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~~ 451 (561)
+..... .++|+|+|+||+|. .... ......+.+.+... .+.+++++||++|.|++++.+...+.+..... ++
T Consensus 315 ~~~~~~-~~~piIiV~NK~Dl--~~~~~~~~~~~~i~~~l~~~-~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t 390 (472)
T PRK03003 315 LSMVIE-AGRALVLAFNKWDL--VDEDRRYYLEREIDRELAQV-PWAPRVNISAKTGRAVDKLVPALETALESWDTRIPT 390 (472)
T ss_pred HHHHHH-cCCCEEEEEECccc--CChhHHHHHHHHHHHhcccC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCH
Confidence 554433 58999999999954 3211 11122333322221 25789999999999999998887776654422 78
Q ss_pred chHHHHHHHHHcc
Q psy17315 452 SVLDKIITQGYKS 464 (561)
Q Consensus 452 ~~l~~li~~~~~~ 464 (561)
+.+++++..+...
T Consensus 391 ~~ln~~~~~~~~~ 403 (472)
T PRK03003 391 GRLNAWLGELVAA 403 (472)
T ss_pred HHHHHHHHHHHHc
Confidence 8899998887654
No 15
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.94 E-value=8.9e-28 Score=258.39 Aligned_cols=317 Identities=21% Similarity=0.238 Sum_probs=188.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc-ccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~D 173 (561)
+|+++|.||||||||+|+|++.. +.+++.||+|++..... ..+..+.++||||+...... ...+......+++++|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 48999999999999999999987 67899999999876652 34567999999998532211 1223344566789999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcCC---------CC-----C-----cc
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKMG---------PK-----K-----TD 230 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~~---------~~-----~-----~~ 230 (561)
++++|+|++.. ....+ .+...+.....+ |+||+|..+... +. + ..
T Consensus 81 ~vl~vvD~~~~------------~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREG------------LTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCC------------CCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCCh
Confidence 99999987521 01111 123334444444 899999865421 10 1 11
Q ss_pred HHHHHHHhhhcC----------CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhccc
Q psy17315 231 EGEKKMLLGRVG----------TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKD 298 (561)
Q Consensus 231 ~~~l~~l~~~~~----------~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~D 298 (561)
...++.+..... ...++.+.|.+|+|||+|+|++++.. ...++..+||+ ++.. .+...+..+.+||
T Consensus 149 ~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~liD 226 (429)
T TIGR03594 149 GDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE--RVIVSDIAGTTRDSIDIPFERNGKKYLLID 226 (429)
T ss_pred HHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC--eeecCCCCCceECcEeEEEEECCcEEEEEE
Confidence 112222222221 12579999999999999999999863 22334455665 4432 2233445789999
Q ss_pred HHHHHHHHH---HHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH
Q psy17315 299 VEHIEKEIN---KIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH 375 (561)
Q Consensus 299 t~Gi~~~~~---~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~ 375 (561)
|||+.+... .++.... ...+. .+..+|+++.|++.. ...+..+..+
T Consensus 227 T~G~~~~~~~~~~~e~~~~-------~~~~~--------------~~~~ad~~ilV~D~~----------~~~~~~~~~~ 275 (429)
T TIGR03594 227 TAGIRRKGKVTEGVEKYSV-------LRTLK--------------AIERADVVLLVLDAT----------EGITEQDLRI 275 (429)
T ss_pred CCCccccccchhhHHHHHH-------HHHHH--------------HHHhCCEEEEEEECC----------CCccHHHHHH
Confidence 999753210 0111100 00000 011123333332211 1234455555
Q ss_pred HHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--c
Q psy17315 376 LNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--A 450 (561)
Q Consensus 376 l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~ 450 (561)
+..... .++|+++|+||+|. .+ .....+.+.+.+... .++.+++++||++|.|+.++.+.....|..... +
T Consensus 276 ~~~~~~-~~~~iiiv~NK~Dl--~~-~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~ 351 (429)
T TIGR03594 276 AGLILE-AGKALVIVVNKWDL--VK-DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRIS 351 (429)
T ss_pred HHHHHH-cCCcEEEEEECccc--CC-CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCC
Confidence 544333 57999999999954 31 112222333222211 135789999999999999998877766654432 6
Q ss_pred cchHHHHHHHHHc
Q psy17315 451 TSVLDKIITQGYK 463 (561)
Q Consensus 451 ~~~l~~li~~~~~ 463 (561)
++.++.++..+..
T Consensus 352 t~~ln~~l~~~~~ 364 (429)
T TIGR03594 352 TSKLNRVLEEAVA 364 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 6778877766543
No 16
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.94 E-value=3.2e-27 Score=267.62 Aligned_cols=320 Identities=19% Similarity=0.207 Sum_probs=190.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCc-cccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAA-EGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~-~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||||+|++.. +.+++.||+|++..... +.+..+.+|||||+..... ....+..+...+++.|
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 355 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLA 355 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhC
Confidence 689999999999999999999987 67889999999876642 2345799999999864221 1112333445567899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcC---------CCC----------Cc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKM---------GPK----------KT 229 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~---------~~~----------~~ 229 (561)
|++++|+|++.. ....+ .+.+.+.....+ |+||+|..+.. +.. ..
T Consensus 356 D~iL~VvDa~~~------------~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 356 DAVVFVVDGQVG------------LTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred CEEEEEEECCCC------------CCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCC
Confidence 999999998521 01111 122333333333 88999975431 110 11
Q ss_pred cHHHHHHHhhhc------------CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhhHhhh
Q psy17315 230 DEGEKKMLLGRV------------GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIINEELR 295 (561)
Q Consensus 230 ~~~~l~~l~~~~------------~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~~el~ 295 (561)
....+..+.... ....++.+.|.+|+|||+|+|.+++... ..++..+||+ |+... +.+.+..+.
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~--~~v~~~~gtT~d~~~~~~~~~~~~~~ 501 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEER--AVVNDLAGTTRDPVDEIVEIDGEDWL 501 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccc--cccCCCCCCCcCcceeEEEECCCEEE
Confidence 111122222211 1236899999999999999999998742 2334445564 55432 334556788
Q ss_pred cccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH
Q psy17315 296 LKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH 375 (561)
Q Consensus 296 l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~ 375 (561)
+|||||+.+........ ++...+ .....+..++++..|++.. ...+..+...
T Consensus 502 liDTaG~~~~~~~~~~~----------e~~~~~--------r~~~~i~~advvilViDat----------~~~s~~~~~i 553 (712)
T PRK09518 502 FIDTAGIKRRQHKLTGA----------EYYSSL--------RTQAAIERSELALFLFDAS----------QPISEQDLKV 553 (712)
T ss_pred EEECCCcccCcccchhH----------HHHHHH--------HHHHHhhcCCEEEEEEECC----------CCCCHHHHHH
Confidence 99999975422111100 000000 0000112223433332211 1234445555
Q ss_pred HHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHh---cCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--c
Q psy17315 376 LNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA---NDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--A 450 (561)
Q Consensus 376 l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~---~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~ 450 (561)
+..... .++|+++|+||+|. ... ...+.+.+.+.. ..++.+++++||++|.|+.+|.+...+.+..... +
T Consensus 554 ~~~~~~-~~~piIiV~NK~DL--~~~--~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~ 628 (712)
T PRK09518 554 MSMAVD-AGRALVLVFNKWDL--MDE--FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIP 628 (712)
T ss_pred HHHHHH-cCCCEEEEEEchhc--CCh--hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCC
Confidence 544332 57999999999954 321 112222222221 1235788999999999999998887777655433 6
Q ss_pred cchHHHHHHHHHc
Q psy17315 451 TSVLDKIITQGYK 463 (561)
Q Consensus 451 ~~~l~~li~~~~~ 463 (561)
++.+++++..+.+
T Consensus 629 T~~Ln~~l~~~~~ 641 (712)
T PRK09518 629 TGKLNAFLGKIQA 641 (712)
T ss_pred hHHHHHHHHHHHh
Confidence 7788888877664
No 17
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=8e-27 Score=251.40 Aligned_cols=320 Identities=20% Similarity=0.235 Sum_probs=188.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCc-cccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAA-EGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~-~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|+|++.. +.+++.||+|++..... ..+..+.+|||||+..... ....+......+++.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 479999999999999999999987 67889999999876542 2346799999999975221 0112333345667899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch---hhccccccCcC---------CCC----------Cc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS---VDAKADSKKKM---------GPK----------KT 229 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~---v~NK~D~~~~~---------~~~----------~~ 229 (561)
|++++|+|++... ... ..+.+.+.....+ |+||+|..+.. +.. ..
T Consensus 82 d~il~vvd~~~~~------------~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGL------------TPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCC------------CHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCC
Confidence 9999999876310 001 1122333333333 89999965421 111 11
Q ss_pred cHHHHHHHhhh---------cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhccc
Q psy17315 230 DEGEKKMLLGR---------VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKD 298 (561)
Q Consensus 230 ~~~~l~~l~~~---------~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~D 298 (561)
....++.+... .....++++.|.+|+|||+|+|++++. ....++..+|++ +.+. .+...+..+.++|
T Consensus 150 v~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~--~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvD 227 (435)
T PRK00093 150 IGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGE--ERVIVSDIAGTTRDSIDTPFERDGQKYTLID 227 (435)
T ss_pred HHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCC--CceeecCCCCceEEEEEEEEEECCeeEEEEE
Confidence 11223333221 123468999999999999999999986 333344555665 3332 2333456789999
Q ss_pred HHHHHHHHH---HHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH
Q psy17315 299 VEHIEKEIN---KIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH 375 (561)
Q Consensus 299 t~Gi~~~~~---~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~ 375 (561)
|||+.+... .++.... ...+. .+..+|+++.|++.. ...+..+..+
T Consensus 228 T~G~~~~~~~~~~~e~~~~-------~~~~~--------------~~~~ad~~ilViD~~----------~~~~~~~~~i 276 (435)
T PRK00093 228 TAGIRRKGKVTEGVEKYSV-------IRTLK--------------AIERADVVLLVIDAT----------EGITEQDLRI 276 (435)
T ss_pred CCCCCCCcchhhHHHHHHH-------HHHHH--------------HHHHCCEEEEEEeCC----------CCCCHHHHHH
Confidence 999743210 0111000 00000 011123333332211 1234455554
Q ss_pred HHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--ccch
Q psy17315 376 LNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--ATSV 453 (561)
Q Consensus 376 l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~~~~ 453 (561)
+..... .++|+++|+||+|...........+.+.+.+... ++.+++++||++|.|+.++.+...+.|.+... +++.
T Consensus 277 ~~~~~~-~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~-~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ 354 (435)
T PRK00093 277 AGLALE-AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFL-DYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSV 354 (435)
T ss_pred HHHHHH-cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccc-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHH
Confidence 443332 5799999999995421110111222333222221 36789999999999999998877666654433 6677
Q ss_pred HHHHHHHHHc
Q psy17315 454 LDKIITQGYK 463 (561)
Q Consensus 454 l~~li~~~~~ 463 (561)
+++++..+..
T Consensus 355 ln~~l~~~~~ 364 (435)
T PRK00093 355 LNRVLEEAVE 364 (435)
T ss_pred HHHHHHHHHH
Confidence 8887776543
No 18
>KOG1487|consensus
Probab=99.91 E-value=1.1e-24 Score=206.90 Aligned_cols=288 Identities=19% Similarity=0.298 Sum_probs=190.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
.+|+++|+|.+||||+++.|++...++..+-|+|.-...+. +.+..+++.|.||+++++..+.+.+.+.+...|.|.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 38999999999999999999999988999999998777763 4567899999999999999999999999999999999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCC
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPN 254 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~ 254 (561)
|+.|+|.- .+...-..++.+|...+.+ +||
T Consensus 140 i~~vld~~------------kp~~hk~~ie~eleg~gir-lnk------------------------------------- 169 (358)
T KOG1487|consen 140 IFIVLDVL------------KPLSHKKIIEKELEGFGIR-LNK------------------------------------- 169 (358)
T ss_pred EEEEeecc------------CcccHHHHHHHhhhcceee-ccC-------------------------------------
Confidence 99999642 2233333444444433211 111
Q ss_pred CCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhh
Q psy17315 255 VGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFI 333 (561)
Q Consensus 255 ~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di 333 (561)
+..++ |+. ...-++.+.+.+ .|+.-+...+ ..++....
T Consensus 170 ---------------~pp~i----~~kkKdkgGInlt~~~---LdlD~~rsil----~eyR~hsA--------------- 208 (358)
T KOG1487|consen 170 ---------------QPPNI----GTKKKDKGGINLTGTH---LDLDLQRSIL----SEYRIHSA--------------- 208 (358)
T ss_pred ---------------CCCCc----cccccccCceeeecch---hhHHHHHHHH----HHhhhcch---------------
Confidence 00111 111 000112222111 1211111111 11110000
Q ss_pred hhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHH
Q psy17315 334 YLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWV 413 (561)
Q Consensus 334 ~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~ 413 (561)
+. .++.....++-+..++... ...|+++++||+| .+. ++++. +.
T Consensus 209 ------------di--------------~Lr~DaT~DdLIdvVegnr--~yVp~iyvLNkId--sIS-----iEELd-ii 252 (358)
T KOG1487|consen 209 ------------DI--------------ALRFDATADDLIDVVEGNR--IYVPCIYVLNKID--SIS-----IEELD-II 252 (358)
T ss_pred ------------he--------------eeecCcchhhhhhhhccCc--eeeeeeeeecccc--eee-----eeccc-ee
Confidence 10 0011112222233333332 4799999999994 332 12221 10
Q ss_pred HhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCceeccccCCCceecccc----C-CCCC
Q psy17315 414 DANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTI----Q-KGTK 488 (561)
Q Consensus 414 ~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~~t~~~~ev~a~~~----~-~g~t 488 (561)
+.....+|+||.++.++++| +..+++.|+|...||..+++.-.+.. . .-++
T Consensus 253 ---~~iphavpISA~~~wn~d~l---------------------L~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~s 308 (358)
T KOG1487|consen 253 ---YTIPHAVPISAHTGWNFDKL---------------------LEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRS 308 (358)
T ss_pred ---eeccceeecccccccchHHH---------------------HHHHhhcchheEEecCCCCCCCCCCCCceecCCccc
Confidence 11356799999999997766 34479999999999998777744333 3 3488
Q ss_pred ccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 489 APQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 489 a~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
..|+|.+||+++.+.|.+|-||+.+- +..+|++|++|+++|.|||.|
T Consensus 309 v~dfc~~ih~~~~~~fk~alvwg~s~------------kh~pq~vg~~h~l~dedvv~i 355 (358)
T KOG1487|consen 309 VEDFCNKIHKSILKQFKYALVWGSSV------------KHNPQRVGKEHVLEDEDVVQI 355 (358)
T ss_pred HHHHHHHHHHHHHHhhhhheEecccc------------CcChhhcchhheeccchhhhh
Confidence 99999999999999999999999885 677899999999999999976
No 19
>KOG2484|consensus
Probab=99.90 E-value=5.6e-24 Score=214.10 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=119.2
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhh-h-cCCCCc-----cCCCChHHHHHHHHHHHhcCCCc-cccccccCC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQIL-I-SDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK-ADSKKKMGP 78 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~-~-~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~-~~~~~~~~~ 78 (561)
+++|||+|||+| +||||+..|+ +++ . ++|+.+ .||+|++++++|+.||+.+++.+ +.+.++...
T Consensus 148 DVVleVlDARDP------lgtR~~~vE~--~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 148 DVVLEVLDARDP------LGTRCPEVEE--AVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred heEEEeeeccCC------CCCCChhHHH--HHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccc
Confidence 689999999999 9999999999 221 1 455554 99999999999999999999998 222222211
Q ss_pred CC-----------c----hhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCe
Q psy17315 79 KK-----------T----DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAF 142 (561)
Q Consensus 79 ~~-----------~----~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~ 142 (561)
.. . ......+..+.....+++||||+|||||||+||+|...+ +.+++.||.|+..+. ...+..
T Consensus 220 ~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe-V~Ldk~ 298 (435)
T KOG2484|consen 220 SNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE-VKLDKK 298 (435)
T ss_pred ccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh-eeccCC
Confidence 10 1 111111223334677999999999999999999999888 999999999999766 778889
Q ss_pred EEEEeCCCcccCCccccccccccccccccCCEEEEEecc
Q psy17315 143 LNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKE 181 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~ 181 (561)
|.|+|.||++.+...+.. --.+++|.-+-.+.|.
T Consensus 299 i~llDsPgiv~~~~~~~~-----~~~Lrn~~~i~~~~dp 332 (435)
T KOG2484|consen 299 IRLLDSPGIVPPSIDEKD-----ALALRNCIPIGKVADP 332 (435)
T ss_pred ceeccCCceeecCCCccc-----hhhhhcccccccccCc
Confidence 999999999976654332 1224556555556543
No 20
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=6.7e-23 Score=210.78 Aligned_cols=142 Identities=25% Similarity=0.357 Sum_probs=116.2
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcC-CCc--ccccccc
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKL-RPK--ADSKKKM 76 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~-~~~--~~~~~~~ 76 (561)
..++++||+|||+| ++||||.+++ +..+|+++ +||+|+..+++|.+++.++. ... .+++.+.
T Consensus 34 ~~d~vvevvDar~P------~~s~~~~l~~----~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~ 103 (322)
T COG1161 34 SVDVVVEVVDARDP------LGTRNPELER----IVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQ 103 (322)
T ss_pred cCCEEEEEEecccc------ccccCccHHH----HHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeeccc
Confidence 46789999999999 9999999999 99999886 99999999999999999885 333 6666666
Q ss_pred CCCCch---------hhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEE
Q psy17315 77 GPKKTD---------EGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVV 146 (561)
Q Consensus 77 ~~~~~~---------~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~ 146 (561)
+.+... ........+......++++||+||||||||||+|.++. +.+++.||+|++.+. ......++|+
T Consensus 104 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~-i~~~~~i~Ll 182 (322)
T COG1161 104 GGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQW-IKLDDGIYLL 182 (322)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEE-EEcCCCeEEe
Confidence 555522 22222233334456889999999999999999999998 899999999999765 6777789999
Q ss_pred eCCCcccCCcc
Q psy17315 147 DIAGLVKGAAE 157 (561)
Q Consensus 147 DtpG~~~~~~~ 157 (561)
||||++.+...
T Consensus 183 DtPGii~~~~~ 193 (322)
T COG1161 183 DTPGIIPPKFD 193 (322)
T ss_pred cCCCcCCCCcc
Confidence 99999987754
No 21
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=9.7e-22 Score=179.86 Aligned_cols=149 Identities=24% Similarity=0.339 Sum_probs=109.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc--ccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||||+|+|.+..++++||+|.+...+.. .+..+.++||||+....+. ++.+...++. -...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 479999999999999999999999999999999999877643 4678999999999865432 2233333332 2678
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|++++|+|++. +.+.+. +..++.++..+ ++||+|..++.+... +.+.+++.++. +.+++
T Consensus 80 D~ii~VvDa~~------------l~r~l~-l~~ql~e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~----pvi~~ 141 (156)
T PF02421_consen 80 DLIIVVVDATN------------LERNLY-LTLQLLELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGV----PVIPV 141 (156)
T ss_dssp SEEEEEEEGGG------------HHHHHH-HHHHHHHTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-----EEEE
T ss_pred CEEEEECCCCC------------HHHHHH-HHHHHHHcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCC----CEEEE
Confidence 99999998762 334443 45566777777 999999998887654 34455555543 79999
Q ss_pred EccCCCCHHHHHHHH
Q psy17315 250 VGVPNVGKSTFFNVL 264 (561)
Q Consensus 250 sg~~~~Gks~l~~~l 264 (561)
||+++.|.+.|++++
T Consensus 142 sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 142 SARTGEGIDELKDAI 156 (156)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred EeCCCcCHHHHHhhC
Confidence 999999999999875
No 22
>KOG1489|consensus
Probab=99.83 E-value=2.4e-20 Score=183.00 Aligned_cols=159 Identities=26% Similarity=0.454 Sum_probs=133.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
-..||+||+||+|||||+|+|+..+..++.|+|||..|+.+... ..++.+-|.||++++++.+.+++-.||.+|..|
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 35799999999999999999999999999999999999988432 235889999999999999999999999999999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch--------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS--------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+.+++|+|.+... ...+++++++|..+|..+.+. |+||+|.++ +....++.+...+...
T Consensus 276 ~~l~fVvD~s~~~-------~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e------ae~~~l~~L~~~lq~~ 342 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQ-------LRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE------AEKNLLSSLAKRLQNP 342 (366)
T ss_pred ceEEEEEECCCcc-------cCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh------HHHHHHHHHHHHcCCC
Confidence 9999999875221 146788888888888765544 899999972 2333357777777777
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.++++|++++.|...|++.|.+.
T Consensus 343 ~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 343 HVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred cEEEeeeccccchHHHHHHHhhc
Confidence 89999999999999999988653
No 23
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.82 E-value=3.4e-20 Score=173.86 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=100.1
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc-cccccccC---
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK-ADSKKKMG--- 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~-~~~~~~~~--- 77 (561)
+++|+|+|||.| ++++|+.+.+.......++|.+ +||++++.+..|++++++....+ +.+.....
T Consensus 1 DvVl~VvDar~p------~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (172)
T cd04178 1 DVILEVLDARDP------LGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKN 74 (172)
T ss_pred CEEEEEEECCCC------CCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccc
Confidence 468999999999 9999999988211113568887 99999999999999998876544 22211111
Q ss_pred CCC--------------------chh----hhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCccccc
Q psy17315 78 PKK--------------------TDE----GEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTID 132 (561)
Q Consensus 78 ~~~--------------------~~~----~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~ 132 (561)
... .+. .............++++++|+||||||||||+|++.. +.+++.||+|++
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~ 154 (172)
T cd04178 75 LGQKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS 154 (172)
T ss_pred hhhcccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc
Confidence 000 000 0111122223445899999999999999999999988 799999999998
Q ss_pred CccccccCCeEEEEeCCCc
Q psy17315 133 PNENNKVPAFLNVVDIAGL 151 (561)
Q Consensus 133 ~~~~~~~~~~i~l~DtpG~ 151 (561)
.+. ...+.+++++||||+
T Consensus 155 ~~~-~~~~~~~~l~DtPGi 172 (172)
T cd04178 155 MQE-VHLDKKVKLLDSPGI 172 (172)
T ss_pred eEE-EEeCCCEEEEECcCC
Confidence 665 444567999999996
No 24
>COG1159 Era GTPase [General function prediction only]
Probab=99.82 E-value=3.2e-20 Score=182.48 Aligned_cols=164 Identities=20% Similarity=0.144 Sum_probs=121.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc-ccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~ 172 (561)
.-|++||.||||||||+|+|.|.+ +.+|+.|.|||....+.. ...++.++||||+..+.+. +..|......++.++
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccC
Confidence 358999999999999999999999 889999999999988854 3569999999999988653 445666678889999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|+++||+|+...- . ..-..+.+.+.....+ +.||+|..+.... .......+....+....+++
T Consensus 87 Dlilfvvd~~~~~---------~--~~d~~il~~lk~~~~pvil~iNKID~~~~~~~---l~~~~~~~~~~~~f~~ivpi 152 (298)
T COG1159 87 DLILFVVDADEGW---------G--PGDEFILEQLKKTKTPVILVVNKIDKVKPKTV---LLKLIAFLKKLLPFKEIVPI 152 (298)
T ss_pred cEEEEEEeccccC---------C--ccHHHHHHHHhhcCCCeEEEEEccccCCcHHH---HHHHHHHHHhhCCcceEEEe
Confidence 9999999875200 0 0011222333332122 8999999854321 12334455555677789999
Q ss_pred EccCCCCHHHHHHHHHhhccCCCcc
Q psy17315 250 VGVPNVGKSTFFNVLTKRAFEDDDV 274 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~~~~~~v 274 (561)
||+.|.|++.|++.+...+++...+
T Consensus 153 SA~~g~n~~~L~~~i~~~Lpeg~~~ 177 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLPEGPWY 177 (298)
T ss_pred eccccCCHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999987654443
No 25
>KOG2423|consensus
Probab=99.81 E-value=2e-20 Score=187.08 Aligned_cols=140 Identities=20% Similarity=0.223 Sum_probs=106.9
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc--------cCCCChHHHHHHHHHHHhcCCCc-cccccc--
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW--------GDGDGPKAPKRRKQHLSDKLRPK-ADSKKK-- 75 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l--------~DL~~~~~~~~w~~~l~~~~~~~-~~~~~~-- 75 (561)
++++.|+|||+| .+|||+.+++ .+...+|+- +||+|.+++.+|+..|.++.+++ ..+.-.
T Consensus 215 DVvvqVlDARDP------mGTrc~~ve~---ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~ns 285 (572)
T KOG2423|consen 215 DVVVQVLDARDP------MGTRCKHVEE---YLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNS 285 (572)
T ss_pred ceeEEeeeccCC------cccccHHHHH---HHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCc
Confidence 678999999999 9999999999 333444443 99999999999999999999888 222222
Q ss_pred cCCCCchhhhHhhh-hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCccc
Q psy17315 76 MGPKKTDEGEKKML-LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVK 153 (561)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~ 153 (561)
.+........+.-. ..-....+.||+|||||+||||+||+|..++ +.+++.||.|+-.+. ...-..|+|||+||++.
T Consensus 286 fGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQY-ItLmkrIfLIDcPGvVy 364 (572)
T KOG2423|consen 286 FGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQY-ITLMKRIFLIDCPGVVY 364 (572)
T ss_pred cchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHH-HHHHhceeEecCCCccC
Confidence 22222222222222 2223456899999999999999999999988 999999999986554 44556799999999998
Q ss_pred CCc
Q psy17315 154 GAA 156 (561)
Q Consensus 154 ~~~ 156 (561)
+..
T Consensus 365 ps~ 367 (572)
T KOG2423|consen 365 PSS 367 (572)
T ss_pred CCC
Confidence 775
No 26
>KOG1424|consensus
Probab=99.80 E-value=5.9e-20 Score=190.31 Aligned_cols=143 Identities=19% Similarity=0.155 Sum_probs=109.1
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--ccccc--ccC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKK--KMG 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~--~~~ 77 (561)
++++.|+|||.| +-.|||.|++|.+.+..+|..+ +||.++++..+|.+||++++..+ .++.. ...
T Consensus 176 DivvqIVDARnP------llfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~ 249 (562)
T KOG1424|consen 176 DIVVQIVDARNP------LLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQL 249 (562)
T ss_pred ceEEEEeecCCc------cccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccc
Confidence 678999999999 9999999999777777766655 99999999999999999988766 22222 000
Q ss_pred CC----C----------chh----------hhHhh-----------h-----------hcCCCCCcEEEEEEcCCCCHHH
Q psy17315 78 PK----K----------TDE----------GEKKM-----------L-----------LGRVGTNLKVGIVGVPNVGKST 111 (561)
Q Consensus 78 ~~----~----------~~~----------~~~~~-----------~-----------~~~~~~~~~v~ivG~pnvGKSt 111 (561)
.. . ... ..+.. . ..+...-++||+||||||||||
T Consensus 250 ~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSS 329 (562)
T KOG1424|consen 250 ESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSS 329 (562)
T ss_pred cccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhH
Confidence 00 0 000 00000 0 0001113799999999999999
Q ss_pred HHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCc
Q psy17315 112 FFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 112 lin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~ 156 (561)
+||+|.|.+ +.|+.+||.|++.++ ..+...+.|+||||++.|..
T Consensus 330 TINaLvG~KkVsVS~TPGkTKHFQT-i~ls~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 330 TINALVGRKKVSVSSTPGKTKHFQT-IFLSPSVCLCDCPGLVFPSF 374 (562)
T ss_pred HHHHHhcCceeeeecCCCCcceeEE-EEcCCCceecCCCCccccCC
Confidence 999999998 999999999999988 67778899999999997764
No 27
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.79 E-value=2.1e-19 Score=178.59 Aligned_cols=161 Identities=26% Similarity=0.387 Sum_probs=122.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..||+||+||||||||+|+++..+..+++|||||..|+-+.. ....+.+-|.||++++++++.+++.+||.+|..|-
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 469999999999999999999999999999999999988842 24468999999999999999999999999999999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch--------hhccccccCcCCCCCccHHHHHHHhh-hcCCC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS--------VDAKADSKKKMGPKKTDEGEKKMLLG-RVGTN 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------v~NK~D~~~~~~~~~~~~~~l~~l~~-~~~~~ 244 (561)
+++||+|.+..+ ...+.+....+.++|..+... |+||+|..... .....+...+. .....
T Consensus 240 vL~hviD~s~~~-------~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~----e~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 240 VLLHVIDLSPID-------GRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE----EELEELKKALAEALGWE 308 (369)
T ss_pred eeEEEEecCccc-------CCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH----HHHHHHHHHHHHhcCCC
Confidence 999999876322 234556666677777655433 89999966211 11122222222 22222
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+|+.++.|++.|...+.+..
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHH
Confidence 233399999999999999887764
No 28
>KOG2485|consensus
Probab=99.79 E-value=1.1e-19 Score=178.61 Aligned_cols=153 Identities=25% Similarity=0.279 Sum_probs=111.7
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc---cccccccC-
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK---ADSKKKMG- 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~---~~~~~~~~- 77 (561)
+.+|||+|||+| +||||+.+++ +...||+| .||+|+...+..+++|+.+.... .++.....
T Consensus 48 D~iiEvrDaRiP------Lssrn~~~~~----~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~ 117 (335)
T KOG2485|consen 48 DCIIEVRDARIP------LSSRNELFQD----FLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNK 117 (335)
T ss_pred cEEEEeeccccC------CccccHHHHH----hcCCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhh
Confidence 468999999999 9999999999 88899998 99999999999999999875444 33333322
Q ss_pred -CCC-----chhhhHhhhhcC-CCCCcEEEEEEcCCCCHHHHHHHHhcC-----C-CcccCCCcccccCccccc--cCCe
Q psy17315 78 -PKK-----TDEGEKKMLLGR-VGTNLKVGIVGVPNVGKSTFFNVLTKS-----S-AAAENFPFCTIDPNENNK--VPAF 142 (561)
Q Consensus 78 -~~~-----~~~~~~~~~~~~-~~~~~~v~ivG~pnvGKStlin~L~~~-----~-~~~~~~~~~T~~~~~~~~--~~~~ 142 (561)
... ....+......+ ....+.++++|.||||||||||++... + +.+++.||+|+....... ....
T Consensus 118 ~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~ 197 (335)
T KOG2485|consen 118 QVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPP 197 (335)
T ss_pred ccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCc
Confidence 111 111222222222 456789999999999999999999642 2 789999999998766433 3346
Q ss_pred EEEEeCCCcccCCccc--ccccccccccc
Q psy17315 143 LNVVDIAGLVKGAAEG--QGLGNAFLSHI 169 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~--~~~~~~~l~~i 169 (561)
++++||||+..|...+ .+++.++...+
T Consensus 198 vy~iDTPGil~P~I~~~e~~lKLAL~g~V 226 (335)
T KOG2485|consen 198 VYLIDTPGILVPSIVDVEDGLKLALCGLV 226 (335)
T ss_pred eEEecCCCcCCCCCCCHHHhhhhhhcccc
Confidence 9999999999887543 34444444333
No 29
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=4.5e-19 Score=183.16 Aligned_cols=159 Identities=27% Similarity=0.411 Sum_probs=119.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-c--CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-V--PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
-..|++||+||||||||+|+|++....++++||+|+.++.+.. . ...+.++||||+++..+.+.++...|+.++..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3579999999999999999999988889999999999988743 2 347999999999988877778888999999999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
|++++|+|++..+ .++.+..+.+++..+. .+ |+||+|+.+.... ........... ...
T Consensus 238 ~vlI~ViD~s~~~----------s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~---~~~~~~~~~~~-~~~ 303 (335)
T PRK12299 238 RLLLHLVDIEAVD----------PVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE---REKRAALELAA-LGG 303 (335)
T ss_pred CEEEEEEcCCCCC----------CHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH---HHHHHHHHHHh-cCC
Confidence 9999999986322 2444455555554432 12 8999999743221 11112211111 235
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|++++.|+..|+++|.+..
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998764
No 30
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=3e-19 Score=191.20 Aligned_cols=164 Identities=24% Similarity=0.355 Sum_probs=120.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+.-..|++||+||||||||||+|++....++++||+|+.++.+.. .+..+.++||||+++..+.+.++...|+.++..
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 344689999999999999999999988888999999999988743 345799999999998887777888889999999
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--------------ch---hhccccccCcCCCCCccHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--------------RS---VDAKADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------------~~---v~NK~D~~~~~~~~~~~~~~l 234 (561)
||+|+||+|++..+ +.......++.+.++|..+. .+ |+||+|+++.... ...+
T Consensus 237 advLv~VVD~s~~e------~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el----~e~l 306 (500)
T PRK12296 237 CAVLVHVVDCATLE------PGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL----AEFV 306 (500)
T ss_pred cCEEEEEECCcccc------cccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH----HHHH
Confidence 99999999986311 11123334444444443322 12 8999999743211 1112
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...... ..+..+.+|+.++.|+..|+.+|.+..
T Consensus 307 ~~~l~~-~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 307 RPELEA-RGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred HHHHHH-cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 222221 135789999999999999999998764
No 31
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.78 E-value=5.4e-19 Score=179.74 Aligned_cols=140 Identities=28% Similarity=0.374 Sum_probs=107.3
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|+|+|||.| ++++|+.+++ +..++|.+ +||+++...+.|.+++++.+..+ .++..+.+.
T Consensus 25 aDvIL~VvDar~p------~~~~~~~l~~----~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi 94 (287)
T PRK09563 25 VDVVIEVLDARIP------LSSENPMIDK----IIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGV 94 (287)
T ss_pred CCEEEEEEECCCC------CCCCChhHHH----HhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccH
Confidence 4688999999999 9999999988 56678877 99998877889999997655433 566665554
Q ss_pred CCchhhhHh---------hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeC
Q psy17315 79 KKTDEGEKK---------MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 79 ~~~~~~~~~---------~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dt 148 (561)
......... ...+....+.+++++|+||||||||||+|++.. +.+++.||+|++.+. ...+.+++++||
T Consensus 95 ~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~-~~~~~~~~l~Dt 173 (287)
T PRK09563 95 KKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW-IKLGKGLELLDT 173 (287)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE-EEeCCcEEEEEC
Confidence 432111100 011123456899999999999999999999988 799999999999754 556678999999
Q ss_pred CCcccCCc
Q psy17315 149 AGLVKGAA 156 (561)
Q Consensus 149 pG~~~~~~ 156 (561)
||+..+..
T Consensus 174 PGi~~~~~ 181 (287)
T PRK09563 174 PGILWPKL 181 (287)
T ss_pred CCcCCCCC
Confidence 99987654
No 32
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=1.5e-18 Score=182.67 Aligned_cols=163 Identities=28% Similarity=0.424 Sum_probs=120.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-c-C-CeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-V-P-AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~-~-~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..|++||+||||||||+|+|++.+..++++|+||+.++.+.. . + ..+.++||||+..+.+.+.++...|+.++..+|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 479999999999999999999988889999999999988753 2 2 359999999999888776778888999999999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC-C
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT-N 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~-~ 244 (561)
++++|+|++..+ .......+..+.+++..+. .+ |+||+|+..... ....+..+...... .
T Consensus 240 vlL~VVD~s~~~-------~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e----l~~~l~~l~~~~~~~~ 308 (390)
T PRK12298 240 VLLHLIDIAPID-------GSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE----AEERAKAIVEALGWEG 308 (390)
T ss_pred EEEEEeccCccc-------ccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH----HHHHHHHHHHHhCCCC
Confidence 999999875110 1122333444444444432 22 899999874321 11223333333332 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|+.++.|+..|+++|.+...+
T Consensus 309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 309 PVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 68999999999999999999887543
No 33
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.77 E-value=8.2e-19 Score=177.45 Aligned_cols=140 Identities=29% Similarity=0.355 Sum_probs=107.2
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|+|+|||.| ++++|+.+++ +..++|.+ +||+++...+.|.+++++.+..+ .+++.+.+.
T Consensus 22 aDvVl~V~Dar~p------~~~~~~~i~~----~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi 91 (276)
T TIGR03596 22 VDVVIEVLDARIP------LSSRNPMIDE----IRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGV 91 (276)
T ss_pred CCEEEEEEeCCCC------CCCCChhHHH----HHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccH
Confidence 4688999999999 9999999988 56678877 99999887899999987655443 666666555
Q ss_pred CCchhhhHh---------hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeC
Q psy17315 79 KKTDEGEKK---------MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 79 ~~~~~~~~~---------~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dt 148 (561)
......... ...+......+++++|+||||||||+|+|++.. +.+++.||+|+..+. ......++++||
T Consensus 92 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~-~~~~~~~~l~Dt 170 (276)
T TIGR03596 92 KKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW-IKLSDGLELLDT 170 (276)
T ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE-EEeCCCEEEEEC
Confidence 442111111 011122456899999999999999999999988 889999999998764 455567999999
Q ss_pred CCcccCCc
Q psy17315 149 AGLVKGAA 156 (561)
Q Consensus 149 pG~~~~~~ 156 (561)
||+..+..
T Consensus 171 PG~~~~~~ 178 (276)
T TIGR03596 171 PGILWPKF 178 (276)
T ss_pred CCcccCCC
Confidence 99987653
No 34
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=177.34 Aligned_cols=152 Identities=22% Similarity=0.266 Sum_probs=119.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-cc--CCeEEEEeCCCcccCCcccccccccc---cccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KV--PAFLNVVDIAGLVKGAAEGQGLGNAF---LSHI 169 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~--~~~i~l~DtpG~~~~~~~~~~~~~~~---l~~i 169 (561)
-+.|++|||+|+|||||||+||+....+.+..|.|.++++.. .. +..+.|-||-|++..-+ +.+..+| |+.+
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP--~~LV~AFksTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLP--HPLVEAFKSTLEEV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCC--hHHHHHHHHHHHHh
Confidence 368999999999999999999999888899999999998863 22 35799999999997765 4566666 6778
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+||+++||||++.+ ....+++...+.|.++... +.||+|+..... .+..+....
T Consensus 270 ~~aDlllhVVDaSdp----------~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-------~~~~~~~~~-- 330 (411)
T COG2262 270 KEADLLLHVVDASDP----------EILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-------ILAELERGS-- 330 (411)
T ss_pred hcCCEEEEEeecCCh----------hHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-------hhhhhhhcC--
Confidence 999999999998742 4567777777778776443 999999873322 122222221
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...|.+|+.+|.|++.|...|.+..
T Consensus 331 ~~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 331 PNPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred CCeEEEEeccCcCHHHHHHHHHHHh
Confidence 2689999999999999999999875
No 35
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=2.2e-18 Score=182.48 Aligned_cols=157 Identities=27% Similarity=0.417 Sum_probs=120.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--c-CCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--V-PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~-~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..|++||+||||||||+|+|++.+..++++||+|+.++.+.. . ...+.++||||+....+.+.+++..|+.++..+|
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 489999999999999999999988888999999999987742 2 4579999999999877777788889999999999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+++||+|++..+ .....+.++.+.++|..+. .+ |+||+|+... ...+..+...+. ..
T Consensus 239 llI~VID~s~~~-------~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-------~e~l~~l~~~l~-~~ 303 (424)
T PRK12297 239 VIVHVIDMSGSE-------GRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-------EENLEEFKEKLG-PK 303 (424)
T ss_pred EEEEEEeCCccc-------cCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-------HHHHHHHHHHhC-Cc
Confidence 999999875211 1234445555555555432 12 9999997421 122333333333 56
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+.++.|+..|++++.+..
T Consensus 304 i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 304 VFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 36
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.76 E-value=2.9e-18 Score=169.08 Aligned_cols=85 Identities=28% Similarity=0.528 Sum_probs=71.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
+|+++|.||+|||||+|+|++....++++||+|.++..+. ..+..++++||||+.+......++..+++..++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999998877899999999887763 34567999999999876544445556677889999999
Q ss_pred EEEeccc
Q psy17315 176 FHLCKEK 182 (561)
Q Consensus 176 l~VvD~~ 182 (561)
++|+|++
T Consensus 82 l~V~D~t 88 (233)
T cd01896 82 LMVLDAT 88 (233)
T ss_pred EEEecCC
Confidence 9999875
No 37
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.75 E-value=4.7e-18 Score=175.42 Aligned_cols=160 Identities=25% Similarity=0.388 Sum_probs=119.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cC-CeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VP-AFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~-~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
-..|++||+||||||||+|+|++....++++|++|+.++.+.. .+ ..+.++||||+++..+...++...|+.++..|
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 3579999999999999999999988889999999999987743 22 57999999999988777677888999999999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
|++++|+|++..+ ....++.+..+.+++..+. .+ |+||+|+..... .....+.+.... ..
T Consensus 237 d~ll~VvD~s~~~-------~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~----~~~~~~~l~~~~-~~ 304 (329)
T TIGR02729 237 RVLLHLIDISPLD-------GRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE----LAELLKELKKAL-GK 304 (329)
T ss_pred CEEEEEEcCcccc-------ccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH----HHHHHHHHHHHc-CC
Confidence 9999999976321 1123444555555554432 12 899999974321 111222232222 24
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|++++.|++.|++++.+.
T Consensus 305 ~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 305 PVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred cEEEEEccCCcCHHHHHHHHHHH
Confidence 68999999999999999999764
No 38
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.74 E-value=4e-18 Score=157.93 Aligned_cols=140 Identities=17% Similarity=0.148 Sum_probs=99.8
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc---ccccccc
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK---ADSKKKM 76 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~---~~~~~~~ 76 (561)
..+++|.|+|||.| .+++++.+.+.......++|.+ +||++++....|+.++++..... .++..+.
T Consensus 8 ~aD~il~VvD~~~p------~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 8 SSDVVIQVLDARDP------MGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hCCEEEEEEECCCC------ccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 35789999999999 8888998887333222346766 99999988889999987654322 3444444
Q ss_pred CCCCchhhhHhhhh-cCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCc
Q psy17315 77 GPKKTDEGEKKMLL-GRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGL 151 (561)
Q Consensus 77 ~~~~~~~~~~~~~~-~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~ 151 (561)
+............. .......+|+++|.||||||||+|+|.+.. +.+++.||+|++.+. ...+..++++||||+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~-~~~~~~~~liDtPGi 157 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY-ITLMKRIYLIDCPGV 157 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE-EEcCCCEEEEECcCC
Confidence 43321111111110 112345789999999999999999999987 789999999998654 445567999999996
No 39
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.73 E-value=1.7e-17 Score=167.52 Aligned_cols=159 Identities=19% Similarity=0.120 Sum_probs=109.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc-ccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~D 173 (561)
+|+++|.||||||||+|+|++.+ ..+++.|++|++...+.. ...++.++||||+...... ...+...+...++++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999988 678999999998765532 3357999999999865321 1122333456789999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIV 250 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~is 250 (561)
++++|+|++..... . ..+.+.+.....+ |.||+|+..... .......+.........+++|
T Consensus 82 vvl~VvD~~~~~~~----------~--~~i~~~l~~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~v~~iS 145 (270)
T TIGR00436 82 LILFVVDSDQWNGD----------G--EFVLTKLQNLKRPVVLTRNKLDNKFKDK----LLPLIDKYAILEDFKDIVPIS 145 (270)
T ss_pred EEEEEEECCCCCch----------H--HHHHHHHHhcCCCEEEEEECeeCCCHHH----HHHHHHHHHhhcCCCceEEEe
Confidence 99999998631100 0 1222333333333 899999973211 112223333333344789999
Q ss_pred ccCCCCHHHHHHHHHhhccCCC
Q psy17315 251 GVPNVGKSTFFNVLTKRAFEDD 272 (561)
Q Consensus 251 g~~~~Gks~l~~~l~~~~~~~~ 272 (561)
|++|.|++.|++++.+..+...
T Consensus 146 A~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 146 ALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred cCCCCCHHHHHHHHHHhCCCCC
Confidence 9999999999999998865433
No 40
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.72 E-value=1.1e-17 Score=173.81 Aligned_cols=155 Identities=22% Similarity=0.216 Sum_probs=110.3
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc--ccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG--QGLGNAFLS 167 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~ 167 (561)
.+.+++++++|.||||||||+|+|++.+ +.|++.||||||..... ..+..+.++||+|+.+....- .|+ ++...
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGI-eRs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGI-ERAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHH-HHHHH
Confidence 4578999999999999999999999999 89999999999987763 245579999999998544321 233 23467
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+.+||++++|+|++..- .......+. ......+ |.||+|+........ . ......
T Consensus 293 ~i~~ADlvL~v~D~~~~~----------~~~d~~~~~--~~~~~~~~i~v~NK~DL~~~~~~~~--------~-~~~~~~ 351 (454)
T COG0486 293 AIEEADLVLFVLDASQPL----------DKEDLALIE--LLPKKKPIIVVLNKADLVSKIELES--------E-KLANGD 351 (454)
T ss_pred HHHhCCEEEEEEeCCCCC----------chhhHHHHH--hcccCCCEEEEEechhcccccccch--------h-hccCCC
Confidence 789999999999986310 000011111 1111111 899999985433211 1 222344
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+.+|+++|.|++.|.++|.+...
T Consensus 352 ~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 352 AIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred ceEEEEecCccCHHHHHHHHHHHHh
Confidence 6899999999999999999988643
No 41
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.71 E-value=6.4e-17 Score=150.92 Aligned_cols=157 Identities=27% Similarity=0.398 Sum_probs=109.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCC-eEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPA-FLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~-~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
.|+++|.||||||||+|+|++....++..|++|.++..+.. .+. .+.++||||+.........+...++..++.+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 48999999999999999999887778888999988766532 233 799999999865443333455666777788999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+++|+|++..+ ..+..+..+.+.+.... .+ |+||+|+.+.... ................
T Consensus 82 vi~v~D~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~ 148 (170)
T cd01898 82 LLHVIDLSGDD---------DPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL----FELLKELLKELWGKPV 148 (170)
T ss_pred EEEEEecCCCC---------CHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh----HHHHHHHHhhCCCCCE
Confidence 99999986431 12233333444443321 22 8999998754322 1223333333234568
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..+++++.+.
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 149 FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 999999999999999998763
No 42
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.71 E-value=4.5e-17 Score=169.64 Aligned_cols=151 Identities=23% Similarity=0.287 Sum_probs=104.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCcccccccc---ccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGN---AFLSH 168 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~---~~l~~ 168 (561)
..++|+++|+||||||||+|+|++....+.+.||+|+++.+... .+..+.++||||++...+. .+.. ..+..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~--~lie~f~~tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPH--ELVAAFRATLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCH--HHHHHHHHHHHH
Confidence 34899999999999999999999988778899999999876532 2357999999999653221 1222 23556
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+++||++++|+|++... ...+++.+.+.+..+. .+ |.||+|+... ..+..... .
T Consensus 266 ~~~ADlil~VvD~s~~~----------~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--------~~v~~~~~--~ 325 (351)
T TIGR03156 266 VREADLLLHVVDASDPD----------REEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--------PRIERLEE--G 325 (351)
T ss_pred HHhCCEEEEEEECCCCc----------hHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--------HhHHHHHh--C
Confidence 88999999999986432 1122222233343332 12 9999999732 11111111 1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.+|+++|.|+..|+++|.+.
T Consensus 326 ~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 2357999999999999999998753
No 43
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.69 E-value=5.4e-17 Score=147.62 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=95.6
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+.+|.|+|||.| .++.+..+.+.......++|.+ +||++++....|.+++++.+..+ .++..+.
T Consensus 12 aD~vl~ViD~~~p------~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~-- 83 (141)
T cd01857 12 SDIVVQIVDARNP------LLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKEN-- 83 (141)
T ss_pred CCEEEEEEEccCC------cccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCC--
Confidence 5678999999999 8888888877222222367776 99999888889999998877544 3443321
Q ss_pred CCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccC
Q psy17315 79 KKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~ 154 (561)
.+++++|.||||||||+|+|++.. ..++..||+|++... ...+..+.++||||+..|
T Consensus 84 ------------------~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~p 141 (141)
T cd01857 84 ------------------ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT-IFLTPTITLCDCPGLVFP 141 (141)
T ss_pred ------------------cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE-EEeCCCEEEEECCCcCCC
Confidence 169999999999999999999988 688899999998654 445557999999999753
No 44
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=1.3e-16 Score=165.35 Aligned_cols=239 Identities=16% Similarity=0.115 Sum_probs=154.2
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhh-cCCCCc-----cCCCChHHHHHHHHHHHhcCCC--c-ccccccc
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILI-SDKPTW-----GDGDGPKAPKRRKQHLSDKLRP--K-ADSKKKM 76 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~-~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~--~-~~~~~~~ 76 (561)
++++|=|+|+|.= .+.....+.+ .+. .+||.+ +|--. .+.-...|-+.|.. + +++..+.
T Consensus 84 ADvilfvVD~~~G------it~~D~~ia~---~Lr~~~kpviLvvNK~D~~~---~e~~~~efyslG~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREG------ITPADEEIAK---ILRRSKKPVILVVNKIDNLK---AEELAYEFYSLGFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCC------CCHHHHHHHH---HHHhcCCCEEEEEEcccCch---hhhhHHHHHhcCCCCceEeehhhcc
Confidence 4678999999986 5555555554 233 346776 55442 22333333343332 2 6777666
Q ss_pred CCCCchhhhHhhh----hcCC---CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEE
Q psy17315 77 GPKKTDEGEKKML----LGRV---GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVV 146 (561)
Q Consensus 77 ~~~~~~~~~~~~~----~~~~---~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~ 146 (561)
+............ .... ..++++++||.||||||||+|+|+|.. +-+++.||+|++...... .+..+.++
T Consensus 152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~li 231 (444)
T COG1160 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLI 231 (444)
T ss_pred CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEE
Confidence 6654211111111 0011 246899999999999999999999998 899999999999876543 36689999
Q ss_pred eCCCcccCCccccc----cccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcccc
Q psy17315 147 DIAGLVKGAAEGQG----LGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKAD 219 (561)
Q Consensus 147 DtpG~~~~~~~~~~----~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D 219 (561)
||+|+.+...-.+. -..+.+.++..||++++|+|++..- ..+-..+-..+.+.++. +.||.|
T Consensus 232 DTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~-----------~~qD~~ia~~i~~~g~~~vIvvNKWD 300 (444)
T COG1160 232 DTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGI-----------SEQDLRIAGLIEEAGRGIVIVVNKWD 300 (444)
T ss_pred ECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCc-----------hHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 99999854422111 1123467889999999999986311 11111122223333333 899999
Q ss_pred ccCcCCCC-CccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 220 SKKKMGPK-KTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 220 ~~~~~~~~-~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+..... ......+...+...+..+.+.+||.+|.|+..|+..+.+-
T Consensus 301 l~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 301 LVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred cCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 98652221 1223345566667788899999999999999999998775
No 45
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.69 E-value=9.2e-17 Score=173.51 Aligned_cols=153 Identities=28% Similarity=0.345 Sum_probs=122.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccC--CccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKG--AAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~--~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|-||||||||||+|||....++|+||+|.+..++. ..+.++.++|+||..+- .+.++.+...|+.. .++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~-~~~ 82 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE-GKP 82 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc-CCC
Confidence 56999999999999999999999999999999999988874 34557999999999863 34455555566532 567
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|+|+.|+|++. +.+++- +.-|+.+++.+ +.|++|..++.+... +.+.+++.++. +.+.+
T Consensus 83 D~ivnVvDAtn------------LeRnLy-ltlQLlE~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGv----PVv~t 144 (653)
T COG0370 83 DLIVNVVDATN------------LERNLY-LTLQLLELGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGV----PVVPT 144 (653)
T ss_pred CEEEEEcccch------------HHHHHH-HHHHHHHcCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCC----CEEEE
Confidence 99999998872 223332 33467777777 899999999988866 56667777776 99999
Q ss_pred EccCCCCHHHHHHHHHhhc
Q psy17315 250 VGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~ 268 (561)
|+.+|.|.+.++..+.+..
T Consensus 145 vA~~g~G~~~l~~~i~~~~ 163 (653)
T COG0370 145 VAKRGEGLEELKRAIIELA 163 (653)
T ss_pred EeecCCCHHHHHHHHHHhc
Confidence 9999999999999998764
No 46
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.68 E-value=1.8e-16 Score=146.61 Aligned_cols=137 Identities=23% Similarity=0.314 Sum_probs=100.4
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC-Cc--cccccccCC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR-PK--ADSKKKMGP 78 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~-~~--~~~~~~~~~ 78 (561)
+++|.|+|||.| .++.+..++. ......++|.+ +||++++....|+.+++.... .+ .+++.+.+.
T Consensus 1 Dvvl~VvD~~~p------~~~~~~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDP------LGTRSPDIER-VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCC------ccccCHHHHH-HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcCh
Confidence 468999999999 9999888872 11223456776 999998888899877765433 22 677777666
Q ss_pred CCchhhhHh---------hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeC
Q psy17315 79 KKTDEGEKK---------MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 79 ~~~~~~~~~---------~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dt 148 (561)
......... ..........+++++|.||||||||+|+|++.. ..+++.||+|++... ...+..++++||
T Consensus 74 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~liDt 152 (155)
T cd01849 74 EKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE-VKLDNKIKLLDT 152 (155)
T ss_pred hhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE-EEecCCEEEEEC
Confidence 553221100 011113456889999999999999999999987 788999999999766 445567999999
Q ss_pred CCc
Q psy17315 149 AGL 151 (561)
Q Consensus 149 pG~ 151 (561)
||+
T Consensus 153 PG~ 155 (155)
T cd01849 153 PGI 155 (155)
T ss_pred CCC
Confidence 996
No 47
>PRK11058 GTPase HflX; Provisional
Probab=99.66 E-value=2.7e-16 Score=167.52 Aligned_cols=152 Identities=23% Similarity=0.324 Sum_probs=103.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-c-C-CeEEEEeCCCcccCCcccccccccc---ccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-V-P-AFLNVVDIAGLVKGAAEGQGLGNAF---LSHIS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~-~-~~i~l~DtpG~~~~~~~~~~~~~~~---l~~i~ 170 (561)
++|+++|+||||||||||+|++....+++.||+|+++..... . + ..+.++||||++...+ ..+..+| +..++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp--~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLP--HDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCC--HHHHHHHHHHHHHhh
Confidence 589999999999999999999988668899999999877522 2 2 3789999999965322 1222223 56678
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+||++++|+|++... ...++..+.+.+.++. .+ |.||+|+.+... ...... .....
T Consensus 276 ~ADlIL~VvDaS~~~----------~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~------~~~~~~--~~~~~ 337 (426)
T PRK11058 276 QATLLLHVVDAADVR----------VQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE------PRIDRD--EENKP 337 (426)
T ss_pred cCCEEEEEEeCCCcc----------HHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh------HHHHHH--hcCCC
Confidence 999999999986322 2233333333444432 22 999999963211 011111 11112
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|++.|++++.+..
T Consensus 338 ~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 338 IRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHh
Confidence 248899999999999999998874
No 48
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=2.3e-16 Score=156.57 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=105.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCccc-CCcccccccccc---ccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVK-GAAEGQGLGNAF---LSH 168 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~-~~~~~~~~~~~~---l~~ 168 (561)
...++.|.|+||||||||+++||+.+..+++|||||+..+.|.. .+..++++||||+.. |..+-..+..+. +.+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999988843 345899999999984 322211222222 445
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+. ++|+|++|++ ..+.+.+..++.++.+.-.....+ |.||+|....... ..............
T Consensus 247 l~--~~IlF~~D~S-------e~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~-----~~~~~~~~~~~~~~ 312 (346)
T COG1084 247 LA--GVILFLFDPS-------ETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKL-----EEIEASVLEEGGEE 312 (346)
T ss_pred hc--CeEEEEEcCc-------cccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHH-----HHHHHHHHhhcccc
Confidence 54 8899999986 234456677777766655544433 9999998832211 11111112212222
Q ss_pred EEEEEccCCCCHHHHHHHHHh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~ 266 (561)
...+++..++|.+.+...+.+
T Consensus 313 ~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 313 PLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred ccceeeeehhhHHHHHHHHHH
Confidence 355666677777665555544
No 49
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.65 E-value=5.7e-17 Score=130.00 Aligned_cols=57 Identities=33% Similarity=0.412 Sum_probs=53.3
Q ss_pred CCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEe
Q psy17315 475 QDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKF 549 (561)
Q Consensus 475 ~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~ 549 (561)
+.+.++|++++|+|++++|+.||+||.++|++|+||+ +|++|++|+|+|||||+|.+
T Consensus 20 ~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~------------------~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 20 NVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR------------------RRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred CccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc------------------CEEECCCEEecCCCEEEEEC
Confidence 3466999999999999999999999999999999997 59999999999999999975
No 50
>PRK15494 era GTPase Era; Provisional
Probab=99.65 E-value=7.8e-16 Score=160.05 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=107.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc-ccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~ 170 (561)
...+|+++|.||||||||+|+|++.. ..+++.|++|++...+. ..+.++.+|||||+..+... ...+....+.+++
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 34689999999999999999999988 66788999998865542 23457999999999754321 1223333445678
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHh-hhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLL-GRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~-~~~~~~~ 245 (561)
.||++++|+|+.. .+...+ .+.+.+.....+ |+||+|+.+. ....+.... .......
T Consensus 131 ~aDvil~VvD~~~------------s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~------~~~~~~~~l~~~~~~~~ 192 (339)
T PRK15494 131 SADLVLLIIDSLK------------SFDDITHNILDKLRSLNIVPIFLLNKIDIESK------YLNDIKAFLTENHPDSL 192 (339)
T ss_pred hCCEEEEEEECCC------------CCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc------cHHHHHHHHHhcCCCcE
Confidence 9999999998642 011111 112222222222 8999998632 112222222 2223456
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCC
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDD 272 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~ 272 (561)
.+++||++|.|++.|+++|.+..++..
T Consensus 193 i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 193 LFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred EEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 899999999999999999999875533
No 51
>KOG0410|consensus
Probab=99.64 E-value=2.2e-16 Score=155.37 Aligned_cols=156 Identities=22% Similarity=0.299 Sum_probs=126.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc---cccCCeEEEEeCCCcccCCcccccccccc---cccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAF---LSHI 169 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~---l~~i 169 (561)
...|++|||+|+|||||+|+||+......+.-|.|.|++.. ...+..+.+.||-|+++..+ ..+..+| ++++
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP--~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLP--IQLVAAFQATLEEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCc--HHHHHHHHHHHHHH
Confidence 46899999999999999999997777788889999998765 22345789999999998766 3556555 7788
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
..+|+|+||+|.+.++...+......+.+.++.-...+..-+..|.||+|..+..-..+ ....+.+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------------~n~~v~i 321 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------------KNLDVGI 321 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------------cCCcccc
Confidence 99999999999998887777777778888887766666666667999999986544432 2347999
Q ss_pred EccCCCCHHHHHHHHHhh
Q psy17315 250 VGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~ 267 (561)
|+.+|.|...+.+.+-..
T Consensus 322 saltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETK 339 (410)
T ss_pred ccccCccHHHHHHHHHHH
Confidence 999999999999998765
No 52
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.63 E-value=7.4e-16 Score=165.92 Aligned_cols=240 Identities=18% Similarity=0.160 Sum_probs=142.5
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC-Cc--cccccccC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR-PK--ADSKKKMG 77 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~-~~--~~~~~~~~ 77 (561)
.+.+|-|+|++.+ .+.....+.+... ..++|.+ +|+.+.+... ..+...+. .+ +++..+.+
T Consensus 79 ad~vl~vvD~~~~------~~~~d~~i~~~l~--~~~~piilVvNK~D~~~~~~~~---~~~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 79 ADVILFVVDGREG------LTPEDEEIAKWLR--KSGKPVILVANKIDGKKEDAVA---AEFYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred CCEEEEEEeCCCC------CCHHHHHHHHHHH--HhCCCEEEEEECccCCcccccH---HHHHhcCCCCeEEEeCCcCCC
Confidence 4678999999998 6555444444111 1245665 8987654321 22333343 22 66666665
Q ss_pred CCCchhhhHhhh------hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeC
Q psy17315 78 PKKTDEGEKKML------LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDI 148 (561)
Q Consensus 78 ~~~~~~~~~~~~------~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~Dt 148 (561)
............ .......++++++|.||+|||||+|+|++.. ..+++.||+|++..... ..+..+.++||
T Consensus 148 v~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT 227 (429)
T TIGR03594 148 IGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDT 227 (429)
T ss_pred hHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEEC
Confidence 543211110000 0112235799999999999999999999987 67889999999875432 23457999999
Q ss_pred CCcccCCccccccc----cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcccccc
Q psy17315 149 AGLVKGAAEGQGLG----NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSK 221 (561)
Q Consensus 149 pG~~~~~~~~~~~~----~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~ 221 (561)
||+.........+. .+.+.+++.||++++|+|++.... ..... +...+.....+ |+||+|+.
T Consensus 228 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~----------~~~~~-~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 228 AGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT----------EQDLR-IAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc----------HHHHH-HHHHHHHcCCcEEEEEECcccC
Confidence 99975543221111 122456899999999999863110 11111 11222222233 89999997
Q ss_pred CcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 222 KKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 222 ~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+....-......+..........+.+.+||++|.|+..+++++.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 297 KDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred CCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 2100000011112222222345678999999999999999998775
No 53
>KOG1423|consensus
Probab=99.60 E-value=3e-15 Score=146.42 Aligned_cols=170 Identities=18% Similarity=0.109 Sum_probs=106.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccccc--CCeEEEEeCCCcccCCcc-ccccc----ccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKV--PAFLNVVDIAGLVKGAAE-GQGLG----NAF 165 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~--~~~i~l~DtpG~~~~~~~-~~~~~----~~~ 165 (561)
.+.+.|++||.||||||||.|.+.|.+ +.++..+.||++...+... ..++.|+||||++..... ...+. ...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 345789999999999999999999999 8899999999998887543 358999999999975532 11222 233
Q ss_pred ccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCC--------CCccHHH-HHH
Q psy17315 166 LSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGP--------KKTDEGE-KKM 236 (561)
Q Consensus 166 l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~--------~~~~~~~-l~~ 236 (561)
..++..||+++.|+|++..... -...+ ++.+.......-.-++||+|..+.+.. +...... .-+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~----l~p~v---l~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTP----LHPRV---LHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCc----cChHH---HHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 5667889999999998721100 00000 011111110000015666666654321 0000000 001
Q ss_pred Hhhhc---C-------------CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 237 LLGRV---G-------------TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 237 l~~~~---~-------------~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
+.+.+ + ....+++||++|.|+.+|.++|....+.
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 11111 1 2247999999999999999999988643
No 54
>PRK00089 era GTPase Era; Reviewed
Probab=99.60 E-value=3.7e-15 Score=152.25 Aligned_cols=161 Identities=21% Similarity=0.187 Sum_probs=109.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc-ccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~ 172 (561)
..|+++|.||||||||+|+|+|.. +.+++.|++|+....+.. ...++.++||||+..+... +..+.......+..+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 459999999999999999999988 678899999988765533 2358999999999765421 122223345567899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|++++|+|++.. .......+.+.+.....+ |+||+|+.... ......+..+.........+.+
T Consensus 86 D~il~vvd~~~~-----------~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~---~~l~~~~~~l~~~~~~~~i~~i 151 (292)
T PRK00089 86 DLVLFVVDADEK-----------IGPGDEFILEKLKKVKTPVILVLNKIDLVKDK---EELLPLLEELSELMDFAEIVPI 151 (292)
T ss_pred CEEEEEEeCCCC-----------CChhHHHHHHHHhhcCCCEEEEEECCcCCCCH---HHHHHHHHHHHhhCCCCeEEEe
Confidence 999999987630 001111222223222223 89999997321 0112233444444455678999
Q ss_pred EccCCCCHHHHHHHHHhhccCC
Q psy17315 250 VGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~~~~ 271 (561)
|+++|.|...|++++.+..+..
T Consensus 152 SA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred cCCCCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999886543
No 55
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=2.7e-15 Score=161.88 Aligned_cols=240 Identities=16% Similarity=0.143 Sum_probs=141.4
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCC-c--ccccccc
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRP-K--ADSKKKM 76 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~-~--~~~~~~~ 76 (561)
+.+++|-|+|++.+ .+.....+.+.. -..++|.+ +|+.+.+. .. ..+...+.. + +++..+.
T Consensus 80 ~ad~il~vvd~~~~------~~~~~~~~~~~l--~~~~~piilv~NK~D~~~~~~--~~-~~~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAG------LTPADEEIAKIL--RKSNKPVILVVNKVDGPDEEA--DA-YEFYSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCC------CCHHHHHHHHHH--HHcCCcEEEEEECccCccchh--hH-HHHHhcCCCCCEEEEeeCCC
Confidence 45778999999998 555443333311 11245555 89765321 11 222233322 2 6666665
Q ss_pred CCCCchhhhHh-----hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeC
Q psy17315 77 GPKKTDEGEKK-----MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDI 148 (561)
Q Consensus 77 ~~~~~~~~~~~-----~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~Dt 148 (561)
+....-..... .........++|+++|.||+|||||+|+|++.. ..+++.||+|++..... ..+..+.++||
T Consensus 149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT 228 (435)
T PRK00093 149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDT 228 (435)
T ss_pred CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEEC
Confidence 55431110000 000002346899999999999999999999887 77899999999875432 23457999999
Q ss_pred CCcccCCccccccc----cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcccccc
Q psy17315 149 AGLVKGAAEGQGLG----NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSK 221 (561)
Q Consensus 149 pG~~~~~~~~~~~~----~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~ 221 (561)
||+.........+. ...+.+++.+|++++|+|++.... .... .+...+.+...+ ++||+|+.
T Consensus 229 ~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~----------~~~~-~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 229 AGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGIT----------EQDL-RIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCC----------HHHH-HHHHHHHHcCCcEEEEEECccCC
Confidence 99976543221111 223457889999999999863210 0111 111222222333 89999997
Q ss_pred CcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 222 KKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 222 ~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..... ......+..........+.+.+||++|.|+..+++.+.+.
T Consensus 298 ~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 298 DEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred CHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 22110 0011112222233345688999999999999999988764
No 56
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.59 E-value=5.2e-15 Score=138.60 Aligned_cols=158 Identities=31% Similarity=0.473 Sum_probs=103.0
Q ss_pred EEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--cc-CCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KV-PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 101 ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~-~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
++|.+|||||||+|+|++....++++|++|.++..+. .. +..+.++||||+.......+.+...++..++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5799999999999999998777788999998887653 23 56799999999975444334455566777889999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHH----------hcch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRD----------LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----------~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
|+|++..... ......+....+...+.. ...+ |+||+|+........ ............
T Consensus 81 v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~----~~~~~~~~~~~~ 152 (176)
T cd01881 81 VVDASEDDDI----GGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEE----ELVRELALEEGA 152 (176)
T ss_pred EEeccCCccc----cccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHH----HHHHHHhcCCCC
Confidence 9998643100 000111111111112211 1222 899999974322111 001122223456
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+|+.++.|+..+++++..
T Consensus 153 ~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 153 EVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred CEEEEehhhhcCHHHHHHHHHh
Confidence 6899999999999999998865
No 57
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=5.4e-15 Score=160.72 Aligned_cols=240 Identities=20% Similarity=0.156 Sum_probs=139.1
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC--Cc-ccccccc
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR--PK-ADSKKKM 76 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~--~~-~~~~~~~ 76 (561)
+.+.+|=|+|++.+ .+.....+.+ .....++|.+ +|+..... ...+.+ ..+. .+ +++..+.
T Consensus 117 ~aD~il~VvD~~~~------~s~~~~~i~~--~l~~~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 117 TADAVLFVVDATVG------ATATDEAVAR--VLRRSGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHGR 185 (472)
T ss_pred hCCEEEEEEECCCC------CCHHHHHHHH--HHHHcCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCCC
Confidence 46788999999988 5433333322 0111345665 99865321 111111 2222 12 7777776
Q ss_pred CCCCch-hhhHhhh-----hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEe
Q psy17315 77 GPKKTD-EGEKKML-----LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVD 147 (561)
Q Consensus 77 ~~~~~~-~~~~~~~-----~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~D 147 (561)
+....- ....... .......++|+++|.||||||||+|+|++.. ..+++.||+|++..... ..+..+.++|
T Consensus 186 gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~D 265 (472)
T PRK03003 186 GVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVD 265 (472)
T ss_pred CcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEE
Confidence 665521 1110000 0011345899999999999999999999987 57889999999876542 2345689999
Q ss_pred CCCcccCCcccc--cccc--ccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccc
Q psy17315 148 IAGLVKGAAEGQ--GLGN--AFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADS 220 (561)
Q Consensus 148 tpG~~~~~~~~~--~~~~--~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~ 220 (561)
|||+........ .... ....+++.||++++|+|++.... ...+..+ ..+.....+ |+||+|+
T Consensus 266 TaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s----------~~~~~~~-~~~~~~~~piIiV~NK~Dl 334 (472)
T PRK03003 266 TAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS----------EQDQRVL-SMVIEAGRALVLAFNKWDL 334 (472)
T ss_pred CCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC----------HHHHHHH-HHHHHcCCCEEEEEECccc
Confidence 999864322111 1000 11235789999999999863210 1111111 122222333 8999999
Q ss_pred cCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 221 KKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 221 ~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.... ......+..........+.+.+||++|.|+..+++.+.+.
T Consensus 335 ~~~~~~-~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~ 380 (472)
T PRK03003 335 VDEDRR-YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETA 380 (472)
T ss_pred CChhHH-HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 742110 0001112222222234577999999999999999999875
No 58
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.57 E-value=7.6e-15 Score=158.09 Aligned_cols=150 Identities=22% Similarity=0.195 Sum_probs=103.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccc-cccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGL-GNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~i 169 (561)
..+++|+++|+||||||||+|+|++.. ..+++.||+|++..... ..+..+.++||||+..+...-+.. ....+..+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 456899999999999999999999987 57889999999876542 234578999999986432211111 11235678
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+++|++++|+|++.... ......+.. ....+ |+||+|+.+..... .......
T Consensus 293 ~~aD~il~VvD~s~~~s----------~~~~~~l~~---~~~~piiiV~NK~DL~~~~~~~------------~~~~~~~ 347 (449)
T PRK05291 293 EEADLVLLVLDASEPLT----------EEDDEILEE---LKDKPVIVVLNKADLTGEIDLE------------EENGKPV 347 (449)
T ss_pred HhCCEEEEEecCCCCCC----------hhHHHHHHh---cCCCCcEEEEEhhhccccchhh------------hccCCce
Confidence 99999999999863221 111122211 11122 99999997432110 1223467
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.|++++.+..
T Consensus 348 i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 348 IRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred EEEEeeCCCCHHHHHHHHHHHH
Confidence 9999999999999999998874
No 59
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.57 E-value=7.5e-15 Score=138.00 Aligned_cols=136 Identities=27% Similarity=0.386 Sum_probs=98.1
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|.|+||+.| .++.+..+.+ ...++|.+ +||.+++....|+++++..+..+ .++..+.+.
T Consensus 20 aD~il~v~D~~~~------~~~~~~~i~~----~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi 89 (171)
T cd01856 20 VDLVIEVRDARIP------LSSRNPLLEK----ILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGV 89 (171)
T ss_pred CCEEEEEeeccCc------cCcCChhhHh----HhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccH
Confidence 4678999999999 7777766655 44566666 99998877778998887765544 666665554
Q ss_pred CCchhhhHhh--------hhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCC
Q psy17315 79 KKTDEGEKKM--------LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIA 149 (561)
Q Consensus 79 ~~~~~~~~~~--------~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dtp 149 (561)
.......... .........+++++|.||||||||+|+|++.. ..+++.||+|+..+. ...+..+.++|||
T Consensus 90 ~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~-~~~~~~~~~iDtp 168 (171)
T cd01856 90 KKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW-IKISPGIYLLDTP 168 (171)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE-EEecCCEEEEECC
Confidence 4321111110 11123345789999999999999999999987 688899999998765 3334679999999
Q ss_pred Ccc
Q psy17315 150 GLV 152 (561)
Q Consensus 150 G~~ 152 (561)
|+.
T Consensus 169 G~~ 171 (171)
T cd01856 169 GIL 171 (171)
T ss_pred CCC
Confidence 984
No 60
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=1.6e-14 Score=164.28 Aligned_cols=236 Identities=18% Similarity=0.156 Sum_probs=139.2
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC--Cc-cccccccC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR--PK-ADSKKKMG 77 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~--~~-~~~~~~~~ 77 (561)
.+.+|=|+|++.+ +......+.+ ..-..++|.+ +|+...... ...+...+. .. +++..+.+
T Consensus 355 aD~iL~VvDa~~~------~~~~d~~i~~--~Lr~~~~pvIlV~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 355 ADAVVFVVDGQVG------LTSTDERIVR--MLRRAGKPVVLAVNKIDDQASEYD---AAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred CCEEEEEEECCCC------CCHHHHHHHH--HHHhcCCCEEEEEECcccccchhh---HHHHHHcCCCCeEEEECCCCCC
Confidence 3577889999987 4433333322 1112356666 898654221 111212222 12 77777777
Q ss_pred CCCchh-hhHhhhhc-------CCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEE
Q psy17315 78 PKKTDE-GEKKMLLG-------RVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVV 146 (561)
Q Consensus 78 ~~~~~~-~~~~~~~~-------~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~ 146 (561)
....-. ........ .....++|+++|.||||||||+|+|++.. ..++++||+|++..... ..+..+.++
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~li 503 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFI 503 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEE
Confidence 655211 11000000 01234799999999999999999999987 56889999999876542 344578899
Q ss_pred eCCCcccCCcccccc--c--cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcccc
Q psy17315 147 DIAGLVKGAAEGQGL--G--NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKAD 219 (561)
Q Consensus 147 DtpG~~~~~~~~~~~--~--~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D 219 (561)
||||+........+. . .....+++.+|++++|+|++.... ...+..+ ..+.+...+ |+||+|
T Consensus 504 DTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s----------~~~~~i~-~~~~~~~~piIiV~NK~D 572 (712)
T PRK09518 504 DTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS----------EQDLKVM-SMAVDAGRALVLVFNKWD 572 (712)
T ss_pred ECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC----------HHHHHHH-HHHHHcCCCEEEEEEchh
Confidence 999987533221110 0 112345789999999999863210 1111111 122222333 899999
Q ss_pred ccCcCCCCCccHHHHHH-Hh---hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 220 SKKKMGPKKTDEGEKKM-LL---GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 220 ~~~~~~~~~~~~~~l~~-l~---~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+... ...+.. +. ......+.+.+||++|.|+..|++.+.+..
T Consensus 573 L~~~~~-----~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 573 LMDEFR-----RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred cCChhH-----HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 974211 112222 11 222345679999999999999999998863
No 61
>KOG1191|consensus
Probab=99.56 E-value=7.3e-15 Score=152.28 Aligned_cols=172 Identities=23% Similarity=0.256 Sum_probs=106.6
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccc---cccccc
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEG---QGLGNA 164 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~---~~~~~~ 164 (561)
.+...+++|+|+|.||||||||+|+|++.+ ..|++.||+|+|...... .+..++|+||+|+.+..... .++. +
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~-r 341 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIE-R 341 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHH-H
Confidence 344578999999999999999999999998 889999999999876532 45579999999998733221 1222 3
Q ss_pred cccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHH------Hhcch--hhccccccCc-CCCCCccHHHHH
Q psy17315 165 FLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIR------DLRRS--VDAKADSKKK-MGPKKTDEGEKK 235 (561)
Q Consensus 165 ~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~~--v~NK~D~~~~-~~~~~~~~~~l~ 235 (561)
....++.||+|++|+|+-.-+.. ......+.+.....-+. +..+. +.||+|.... ..........+.
T Consensus 342 A~k~~~~advi~~vvda~~~~t~----sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~ 417 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTE----SDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS 417 (531)
T ss_pred HHHHHhhcCEEEEEecccccccc----cchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccc
Confidence 34567899999999998210000 00000011110000000 00111 7899998754 111111111111
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
. ...-.......+|+.++.|.+.|.+.+.+..
T Consensus 418 ~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 418 A-EGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred c-ccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 1 1111233445599999999999999999874
No 62
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.56 E-value=2.3e-14 Score=133.49 Aligned_cols=158 Identities=20% Similarity=0.162 Sum_probs=97.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccc-ccccccccc-cccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQ-GLGNAFLSH-ISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~-~~~~~~l~~-i~~~ 172 (561)
++|+++|.||||||||+|+|++....++++|++|.+...+.. ....+.++||||+........ .+....+.. ...+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 368999999999999999999988667778898887765422 235799999999853221111 010011111 1235
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
|++++|+|++.... ... .....+.+.+... ..+ |+||+|+....... ...... .......+
T Consensus 81 d~~l~v~d~~~~~~-------~~~-~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~-----~~~~~~-~~~~~~~~ 146 (168)
T cd01897 81 AAVLFLFDPSETCG-------YSL-EEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS-----EIEEEE-ELEGEEVL 146 (168)
T ss_pred CcEEEEEeCCcccc-------cch-HHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHH-----HHHHhh-hhccCceE
Confidence 89999998763210 000 1111122223222 122 99999997433221 112222 22456789
Q ss_pred EEEccCCCCHHHHHHHHHhhc
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+|+++|.|+..+++++.+..
T Consensus 147 ~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 147 KISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred EEEecccCCHHHHHHHHHHHh
Confidence 999999999999999998753
No 63
>COG1159 Era GTPase [General function prediction only]
Probab=99.55 E-value=5.5e-16 Score=152.76 Aligned_cols=161 Identities=24% Similarity=0.285 Sum_probs=115.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
-.+++.|+||+|||||+|.|.+. ..+.+|+.+.|| +.++++.. .+.+++|+||||+.+.-..+.+.+.+...+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~--KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl- 83 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ--KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL- 83 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC--ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh-
Confidence 35899999999999999999999 778999988887 55566543 45789999999998876666666543333322
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++|+++++++... .|...|..+++.+.. ...|+++++||+ |...++
T Consensus 84 --------------------~dvDlilfvvd~~~----------~~~~~d~~il~~lk~-~~~pvil~iNKI--D~~~~~ 130 (298)
T COG1159 84 --------------------KDVDLILFVVDADE----------GWGPGDEFILEQLKK-TKTPVILVVNKI--DKVKPK 130 (298)
T ss_pred --------------------ccCcEEEEEEeccc----------cCCccHHHHHHHHhh-cCCCeEEEEEcc--ccCCcH
Confidence 33377776655422 366677777776654 467999999999 444322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.. +..+.+.+....++..++|+||+.|.|+..|.+....
T Consensus 131 ~~-l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~ 169 (298)
T COG1159 131 TV-LLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKE 169 (298)
T ss_pred HH-HHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHH
Confidence 21 2344455555556889999999999999999765544
No 64
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=136.08 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=103.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCc-c--cccc---ccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAA-E--GQGL---GNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~-~--~~~~---~~~~l 166 (561)
....|+++|++|||||||||+|++++ +.+|..||.|+..+. ......+.++|.||+.-..- . -+.+ ...++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf-f~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF-FEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEE-EEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999977 999999999999876 44455699999999963221 0 1111 12223
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHh---h
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLL---G 239 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~---~ 239 (561)
..=.+-..+++++|++. .....|. +-+.+.+...+ ++||+|+.+..+. .+.+..+. .
T Consensus 102 ~~R~~L~~vvlliD~r~------------~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~----~k~l~~v~~~l~ 165 (200)
T COG0218 102 EKRANLKGVVLLIDARH------------PPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER----NKQLNKVAEELK 165 (200)
T ss_pred hhchhheEEEEEEECCC------------CCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH----HHHHHHHHHHhc
Confidence 22223466778887752 2233332 33445555554 8999999954332 12222332 2
Q ss_pred hcCCCc--EEEEEccCCCCHHHHHHHHHhh
Q psy17315 240 RVGTNL--KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 240 ~~~~~~--~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+. .+..|..++.|++.|.+.|.+.
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHHHHH
Confidence 223333 8999999999999999998775
No 65
>KOG1191|consensus
Probab=99.54 E-value=8.7e-16 Score=159.06 Aligned_cols=309 Identities=17% Similarity=0.163 Sum_probs=163.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc------------------
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE------------------ 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~------------------ 157 (561)
.+++.|.||+||++|.|. ...+.+.+.+|+|+|...+. +.|..+...||.|+.-....
T Consensus 77 s~~v~~~~~~~~~~l~~~--~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~~hgs~avv~~~l~a~~~sg~~~i 154 (531)
T KOG1191|consen 77 SVMVPKRRNAGLRALYNP--EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQTHGSSAVVVGVLTALGASGIPGI 154 (531)
T ss_pred ccccCCCCccccccccCh--hhcccccCCCCcchhhhhhccccCCceeeeeeeEEEEEecCccchhhHHHHhhhccCCCc
Confidence 478899999999999998 22255677889999987663 45667888899888522111
Q ss_pred -----cccccccccc---cc----ccCCEEEEEecccccchh-hhccchhh-HhhhHHHHHHHHHHhcchhhccccccCc
Q psy17315 158 -----GQGLGNAFLS---HI----SACDAIFHLCKEKLRNIF-FISLNTIT-IWRNLKLLETRIRDLRRSVDAKADSKKK 223 (561)
Q Consensus 158 -----~~~~~~~~l~---~i----~~~D~il~VvD~~~~~~~-~~~~~~~~-~~~~~~~l~~~l~~~~~~v~NK~D~~~~ 223 (561)
++....+|++ .+ ...|+|....++...... ........ .+. +...+-+....+.--+|..+.
T Consensus 155 r~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l~~~----~r~~lIe~~a~l~a~idf~e~ 230 (531)
T KOG1191|consen 155 RLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALALCFG----WRKILIEALAGLEARIDFEEE 230 (531)
T ss_pred cccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHHhhhh----HHHHHHHHHhccceeechhhc
Confidence 1111111111 11 112333333322100000 00000000 000 112222222222233444333
Q ss_pred CCCC-----CccHHHHH---H---------HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc
Q psy17315 224 MGPK-----KTDEGEKK---M---------LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR 285 (561)
Q Consensus 224 ~~~~-----~~~~~~l~---~---------l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~ 285 (561)
..+. ......++ + .......+..|++.|+||+|||+|+|+|.+. +.++|++++||| |.++
T Consensus 231 ~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~--drsIVSpv~GTTRDaie 308 (531)
T KOG1191|consen 231 RPLEEIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSRE--DRSIVSPVPGTTRDAIE 308 (531)
T ss_pred CchhhccchhhhhHHHHHHHHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcC--CceEeCCCCCcchhhhe
Confidence 3221 11111111 1 1233467899999999999999999999999 889999999998 4443
Q ss_pred -chhhhhHhhhcccHHHHHH-HHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcc
Q psy17315 286 -DIEIINEELRLKDVEHIEK-EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHA 363 (561)
Q Consensus 286 -~~~~~~~el~l~Dt~Gi~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~ 363 (561)
.+++.+..+.|.||+|+++ .-+.+++.....+++.+.+ +|++..|++..+.
T Consensus 309 a~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~---------------------advi~~vvda~~~------ 361 (531)
T KOG1191|consen 309 AQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIER---------------------ADVILLVVDAEES------ 361 (531)
T ss_pred eEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhh---------------------cCEEEEEeccccc------
Confidence 3566678899999999987 4444555554443333222 2555544443221
Q ss_pred cCCCCCHHHHH---HHHhhh--------hccCCceEEEecCChhhhhhhccchHHHHHHHHHh-cCC-CCeEEeechhhh
Q psy17315 364 RYGDWSNADIE---HLNKLN--------LLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA-NDP-GATIIPFSGVFE 430 (561)
Q Consensus 364 ~~~~~~~~e~~---~l~~~~--------~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~-~~~-~~~vi~iSA~~~ 430 (561)
+..++.. .|.... ....+|+++++||+|. ...-.........+... ..+ +..++.+||+++
T Consensus 362 ----~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~--~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tk 435 (531)
T KOG1191|consen 362 ----DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL--VSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTK 435 (531)
T ss_pred ----ccccchHHHHHHHHhccceEEEeccccccceEEEechhhc--cCccccccCCceeccccccCcccceEEEeeechh
Confidence 1111211 121111 0123899999999954 32101110000011111 111 234555999999
Q ss_pred hhhCCCCHHHHHHHHHH
Q psy17315 431 HQLVDMPDDERQRYLDE 447 (561)
Q Consensus 431 ~gl~~L~~~~~~~~~~~ 447 (561)
+|+.+|.......+...
T Consensus 436 eg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 436 EGCERLSTALLNIVERL 452 (531)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 99999988777666544
No 66
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.53 E-value=2.8e-14 Score=161.84 Aligned_cols=153 Identities=20% Similarity=0.304 Sum_probs=106.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc------cccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE------GQGLGNAFLS 167 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~------~~~~~~~~l~ 167 (561)
.++|+++|.||||||||+|+|+|....++++||+|.+...+.. .+..+.++||||+.+.... ++.+...++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l- 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI- 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH-
Confidence 3589999999999999999999998889999999998766532 3457999999999754321 111111111
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
....+|++++|+|++..+ +.+. +..++.+...+ +.||+|..++.+... ..+.+....+ .
T Consensus 82 ~~~~aD~vI~VvDat~le------------r~l~-l~~ql~e~giPvIvVlNK~Dl~~~~~i~i----d~~~L~~~LG-~ 143 (772)
T PRK09554 82 LSGDADLLINVVDASNLE------------RNLY-LTLQLLELGIPCIVALNMLDIAEKQNIRI----DIDALSARLG-C 143 (772)
T ss_pred hccCCCEEEEEecCCcch------------hhHH-HHHHHHHcCCCEEEEEEchhhhhccCcHH----HHHHHHHHhC-C
Confidence 125789999999986311 1222 33455555555 999999986554421 2233322222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+.+|.|++.+.+.+.+.
T Consensus 144 pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 144 PVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred CEEEEEeecCCCHHHHHHHHHHh
Confidence 78999999999999999999765
No 67
>PRK04213 GTP-binding protein; Provisional
Probab=99.53 E-value=6.9e-14 Score=134.64 Aligned_cols=165 Identities=18% Similarity=0.137 Sum_probs=96.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCC--cc--cccccc---ccc-
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGA--AE--GQGLGN---AFL- 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~--~~--~~~~~~---~~l- 166 (561)
...+|+++|.+|||||||+|+|++....++..||+|.+..... . ..+.+|||||+.... +. .+.+.. .++
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~-~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYD-W-GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEe-e-cceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999998877888999998765422 2 269999999973211 10 011111 112
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
..+..+|++++|+|++.................-..+...+.....+ |+||+|+.+.. ......+......
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~------~~~~~~~~~~~~~ 159 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR------DEVLDEIAERLGL 159 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH------HHHHHHHHHHhcC
Confidence 23456789999998752110000000000000000111222222223 99999986432 1122222222221
Q ss_pred --------CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 --------NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 --------~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+||++| |++.++++|.+..
T Consensus 160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred CccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 25799999999 9999999998863
No 68
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.52 E-value=2.1e-15 Score=156.92 Aligned_cols=163 Identities=26% Similarity=0.318 Sum_probs=118.6
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
.+.+.++.+.|+||+|||||+|+|.++ +.++|+.++||| |.++ ++...+..+.+.||+|+++.-+.+++...++.+
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~--d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGR--DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcC--CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 378899999999999999999999999 899999999998 4443 356677899999999999888888888776555
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
+.+.++ |.++.+++.. ..++.++...+. .....+|+++|.||. |+
T Consensus 292 ~~i~~A---------------------DlvL~v~D~~----------~~~~~~d~~~~~--~~~~~~~~i~v~NK~--DL 336 (454)
T COG0486 292 KAIEEA---------------------DLVLFVLDAS----------QPLDKEDLALIE--LLPKKKPIIVVLNKA--DL 336 (454)
T ss_pred HHHHhC---------------------CEEEEEEeCC----------CCCchhhHHHHH--hcccCCCEEEEEech--hc
Confidence 443433 6655554421 124556666665 222579999999999 55
Q ss_pred hhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 399 IKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
... .....+ ++ .++.+++.+||+++.||+.|.++..+.|...
T Consensus 337 ~~~--~~~~~~-~~----~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 337 VSK--IELESE-KL----ANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccc--cccchh-hc----cCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 431 112222 11 1245799999999999999988777766544
No 69
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.52 E-value=4.5e-14 Score=136.31 Aligned_cols=151 Identities=22% Similarity=0.272 Sum_probs=99.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cC-CeEEEEeCCCcccCCcccccccc---cccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VP-AFLNVVDIAGLVKGAAEGQGLGN---AFLSHI 169 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~-~~i~l~DtpG~~~~~~~~~~~~~---~~l~~i 169 (561)
-++|+++|.||||||||+|+|++....+.+.++.|.++..... .+ ..+.++||||+....+. .+.. ..+..+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH--QLVEAFRSTLEEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCH--HHHHHHHHHHHHH
Confidence 3689999999999999999999987666677788877655421 12 27999999999643221 1111 123446
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
..+|++++|+|++.... ......+.+.+..+. .+ |+||+|+...... ... .....
T Consensus 119 ~~~d~ii~v~D~~~~~~----------~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~--------~~~-~~~~~ 179 (204)
T cd01878 119 AEADLLLHVVDASDPDY----------EEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL--------EER-LEAGR 179 (204)
T ss_pred hcCCeEEEEEECCCCCh----------hhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH--------HHH-hhcCC
Confidence 78999999998863221 111222223333221 12 9999999743221 111 11234
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+.+|+++|.|+..++++|...
T Consensus 180 ~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 180 PDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CceEEEEcCCCCCHHHHHHHHHhh
Confidence 568999999999999999998764
No 70
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.50 E-value=5.8e-14 Score=128.67 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=97.3
Q ss_pred EEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCc-cccccccccccccccCCEE
Q psy17315 100 GIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAA-EGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 100 ~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~-~~~~~~~~~l~~i~~~D~i 175 (561)
+++|.+|||||||+|+|++.. ..+++.|++|++..... ..+..+.++||||+..... ....+...+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 478999999999999999887 55677888887765432 2345789999999975432 1112223344567889999
Q ss_pred EEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEcc
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~ 252 (561)
++|+|+..... .... .+...+.....+ ++||+|..+.... ............+.+|++
T Consensus 81 i~v~d~~~~~~----------~~~~-~~~~~~~~~~~piiiv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~Sa~ 141 (157)
T cd01894 81 LFVVDGREGLT----------PADE-EIAKYLRKSKKPVILVVNKVDNIKEEDE--------AAEFYSLGFGEPIPISAE 141 (157)
T ss_pred EEEEeccccCC----------ccHH-HHHHHHHhcCCCEEEEEECcccCChHHH--------HHHHHhcCCCCeEEEecc
Confidence 99998752110 0011 112223222333 9999999753211 111222333467999999
Q ss_pred CCCCHHHHHHHHHhh
Q psy17315 253 PNVGKSTFFNVLTKR 267 (561)
Q Consensus 253 ~~~Gks~l~~~l~~~ 267 (561)
+|.|+..+++++.+.
T Consensus 142 ~~~gv~~l~~~l~~~ 156 (157)
T cd01894 142 HGRGIGDLLDAILEL 156 (157)
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999998764
No 71
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.50 E-value=1.2e-13 Score=126.97 Aligned_cols=148 Identities=24% Similarity=0.270 Sum_probs=97.9
Q ss_pred EEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc--ccccccccccccccCCEEE
Q psy17315 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 101 ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~~D~il 176 (561)
++|.+|||||||+|++++....++.+|++|.+..... ..+..+.++||||+...... ...+...++.. ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 5799999999999999998777888999999876542 22357899999998643321 11233334433 6899999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccC
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVP 253 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~ 253 (561)
+|+|+...+ .... +..++.....+ ++||+|+......... ...+.... ..+.+.+|+.+
T Consensus 80 ~v~d~~~~~------------~~~~-~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~----~~~~~~~~-~~~~~~iSa~~ 141 (158)
T cd01879 80 NVVDATNLE------------RNLY-LTLQLLELGLPVVVALNMIDEAEKRGIKID----LDKLSELL-GVPVVPTSARK 141 (158)
T ss_pred EEeeCCcch------------hHHH-HHHHHHHcCCCEEEEEehhhhcccccchhh----HHHHHHhh-CCCeEEEEccC
Confidence 999876311 0111 11223333333 9999999755433221 12222221 24689999999
Q ss_pred CCCHHHHHHHHHhh
Q psy17315 254 NVGKSTFFNVLTKR 267 (561)
Q Consensus 254 ~~Gks~l~~~l~~~ 267 (561)
|.|+..+++++...
T Consensus 142 ~~~~~~l~~~l~~~ 155 (158)
T cd01879 142 GEGIDELKDAIAEL 155 (158)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998764
No 72
>PRK13796 GTPase YqeH; Provisional
Probab=99.47 E-value=7.3e-14 Score=146.58 Aligned_cols=131 Identities=21% Similarity=0.203 Sum_probs=93.8
Q ss_pred CceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCCh----HHHHHHHHHHH-hcCCC---c--ccc
Q psy17315 8 PTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGP----KAPKRRKQHLS-DKLRP---K--ADS 72 (561)
Q Consensus 8 ~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~----~~~~~w~~~l~-~~~~~---~--~~~ 72 (561)
+++-|+|++++ .++.++.+.+ +.+++|.+ +||.++ +.++.|++.+. ..+.. + .++
T Consensus 72 lIv~VVD~~D~------~~s~~~~L~~----~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA 141 (365)
T PRK13796 72 LVVNVVDIFDF------NGSWIPGLHR----FVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA 141 (365)
T ss_pred EEEEEEECccC------CCchhHHHHH----HhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence 78999999999 8999999988 66677776 999863 45677876554 34432 2 566
Q ss_pred ccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcC-----C-CcccCCCcccccCccccccCCeEEEE
Q psy17315 73 KKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKS-----S-AAAENFPFCTIDPNENNKVPAFLNVV 146 (561)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~-----~-~~~~~~~~~T~~~~~~~~~~~~i~l~ 146 (561)
..+.+.+....... . ...+.++.+||.||||||||||+|.+. . ..+++.||||++... ...+....++
T Consensus 142 k~g~gI~eL~~~I~---~--~~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~-~~l~~~~~l~ 215 (365)
T PRK13796 142 QKGHGIDELLEAIE---K--YREGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE-IPLDDGSFLY 215 (365)
T ss_pred CCCCCHHHHHHHHH---H--hcCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE-EEcCCCcEEE
Confidence 66555433211111 1 112458999999999999999999853 2 458999999999765 3445567999
Q ss_pred eCCCcccC
Q psy17315 147 DIAGLVKG 154 (561)
Q Consensus 147 DtpG~~~~ 154 (561)
||||+...
T Consensus 216 DTPGi~~~ 223 (365)
T PRK13796 216 DTPGIIHR 223 (365)
T ss_pred ECCCcccc
Confidence 99999743
No 73
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.46 E-value=2.9e-13 Score=125.83 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=100.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccc----cccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLG----NAFLSH 168 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~----~~~l~~ 168 (561)
+++|+++|.||+|||||+|+|++.. ...++.|++|++..... ..+..+.+|||||+....+....+. ...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4789999999999999999999877 56677888888764432 2344688999999975533211111 122345
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCC-ccHHHHHHHhhhcCCC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKK-TDEGEKKMLLGRVGTN 244 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~-~~~~~l~~l~~~~~~~ 244 (561)
++.+|++++|+|+..... ..... +...+.....+ ++||+|+.+...... .....+..........
T Consensus 82 ~~~~d~vi~v~d~~~~~~----------~~~~~-~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (174)
T cd01895 82 IERADVVLLVIDATEGIT----------EQDLR-IAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYA 150 (174)
T ss_pred HhhcCeEEEEEeCCCCcc----------hhHHH-HHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCC
Confidence 678999999998753210 01111 11122222233 899999975421100 0011122222222346
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
+.+.+|++++.|+..+++++..
T Consensus 151 ~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 151 PIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred ceEEEeccCCCCHHHHHHHHHH
Confidence 7899999999999999998865
No 74
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.46 E-value=2.1e-13 Score=124.74 Aligned_cols=148 Identities=22% Similarity=0.189 Sum_probs=99.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc-ccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG-QGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~-~~~~~~~l~~i~~ 171 (561)
+++|+++|.||+|||||+|+|++.. ..+++.|++|.+..... .....+.++||||+....... ..........+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987 56788899998765432 223478999999986543210 0011123455678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+|++++|+|++... .......+.. ....+ +.||+|+...... .......+.+.
T Consensus 81 ~~~~v~v~d~~~~~----------~~~~~~~~~~---~~~~~vi~v~nK~D~~~~~~~-----------~~~~~~~~~~~ 136 (157)
T cd04164 81 ADLVLFVIDASRGL----------DEEDLEILEL---PADKPIIVVLNKSDLLPDSEL-----------LSLLAGKPIIA 136 (157)
T ss_pred CCEEEEEEECCCCC----------CHHHHHHHHh---hcCCCEEEEEEchhcCCcccc-----------ccccCCCceEE
Confidence 99999999886311 0011111111 12222 8999999854322 12223557899
Q ss_pred EEccCCCCHHHHHHHHHhh
Q psy17315 249 IVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~ 267 (561)
+|+.+|.|+..|+++|.+.
T Consensus 137 ~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 137 ISAKTGEGLDELKEALLEL 155 (157)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 75
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.46 E-value=1.9e-13 Score=126.26 Aligned_cols=151 Identities=20% Similarity=0.133 Sum_probs=91.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCcccc--cc-CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNENN--KV-PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~~--~~-~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
|.|+++|.||||||||+|+|++.. ......+++|.+..... .. ...+.+|||||.... .......++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~-------~~~~~~~~~ 73 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF-------IKNMLAGAG 73 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH-------HHHHHhhhh
Confidence 468999999999999999999754 22223456676543321 11 457999999997422 122345578
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhccccccCcCCCCCccHHHHHHHhhhc--CCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAKADSKKKMGPKKTDEGEKKMLLGRV--GTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~--~~~ 244 (561)
.+|++++|+|++.. ........+.. +..... + ++||+|+....... .....+....... ...
T Consensus 74 ~ad~ii~V~d~~~~-------~~~~~~~~~~~----~~~~~~~~~ilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04171 74 GIDLVLLVVAADEG-------IMPQTREHLEI----LELLGIKRGLVVLTKADLVDEDWLE-LVEEEIRELLAGTFLADA 141 (164)
T ss_pred cCCEEEEEEECCCC-------ccHhHHHHHHH----HHHhCCCcEEEEEECccccCHHHHH-HHHHHHHHHHHhcCcCCC
Confidence 89999999987521 00111111111 111222 3 89999997421100 0011222222221 346
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
+.+.+|+++|.|+..+++.+..
T Consensus 142 ~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 142 PIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cEEEEeCCCCcCHHHHHHHHhh
Confidence 7899999999999999998753
No 76
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.45 E-value=4.7e-13 Score=123.57 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=96.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc----cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+|+++|.||||||||+|+|++.....+..|++|.+...... ....+.+|||||..... ......++.+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR-------SLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhccCC
Confidence 79999999999999999999988666667777766543211 12358899999964322 11233468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-hc--ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-LR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
++++|+|.+.++ .++.++.+...+.. .. .+ ++||+|+...... .......+.... ....+
T Consensus 75 ~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~---~~~~~~~~~~~~-~~~~~ 140 (161)
T cd01861 75 VAVVVYDITNRQ----------SFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQV---STEEGEKKAKEL-NAMFI 140 (161)
T ss_pred EEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCcc---CHHHHHHHHHHh-CCEEE
Confidence 999999875321 23333332222222 11 22 8999999633222 222222222222 25679
Q ss_pred EEEccCCCCHHHHHHHHHhh
Q psy17315 248 GIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~ 267 (561)
.+|+.+|.|.+.+++++.+.
T Consensus 141 ~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 141 ETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999764
No 77
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.45 E-value=6.2e-14 Score=122.83 Aligned_cols=85 Identities=34% Similarity=0.448 Sum_probs=67.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccc--ccccccccccccC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQ--GLGNAFLSHISAC 172 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~--~~~~~~l~~i~~~ 172 (561)
+|+++|.||||||||+|+|++.. ..+++.+++|+.+.... .....+.++||||+..+..... .....+++.+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999976 78999999999985432 3445789999999987654322 1334567778999
Q ss_pred CEEEEEeccc
Q psy17315 173 DAIFHLCKEK 182 (561)
Q Consensus 173 D~il~VvD~~ 182 (561)
|++++|+|+.
T Consensus 81 d~ii~vv~~~ 90 (116)
T PF01926_consen 81 DLIIYVVDAS 90 (116)
T ss_dssp SEEEEEEETT
T ss_pred CEEEEEEECC
Confidence 9999999864
No 78
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.45 E-value=1.1e-12 Score=126.18 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=100.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc-C--CeEEEEeCCCcccCCc-ccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV-P--AFLNVVDIAGLVKGAA-EGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~-~--~~i~l~DtpG~~~~~~-~~~~~~~~~l~~i~~ 171 (561)
++|+++|.||||||||+|++.+........|.++.+.... ... + ..+.+|||||...... .+..........++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 4799999999999999999998764333344444332111 111 2 3578999999854221 111111112345789
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc------ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+|++++|+|.+.. ..++.+..+.+.+.... .+ |+||+|+.+.... .......+.....
T Consensus 81 ad~iilv~D~~~~----------~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~---~~~~~~~~~~~~~ 147 (198)
T cd04142 81 SRAFILVYDICSP----------DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA---PRHVLSVLVRKSW 147 (198)
T ss_pred CCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc---cHHHHHHHHHHhc
Confidence 9999999987632 23334444444444432 11 8999999753221 2222333322223
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDD 273 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~ 273 (561)
..+.+.+|+++|.|+..|++.+....+....
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 3467999999999999999999987554333
No 79
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.44 E-value=1.5e-13 Score=131.39 Aligned_cols=131 Identities=20% Similarity=0.114 Sum_probs=87.3
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHH----HHHHHHHH--HhcCC---Cc--
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKA----PKRRKQHL--SDKLR---PK-- 69 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~----~~~w~~~l--~~~~~---~~-- 69 (561)
.+.+|.|+|++.| ..+.++.+.. ...++|.+ +||.+++. .+.|.+.+ +..+. .+
T Consensus 35 ad~il~VvD~~~~------~~~~~~~l~~----~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (190)
T cd01855 35 KALVVHVVDIFDF------PGSLIPRLRL----FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVIL 104 (190)
T ss_pred CcEEEEEEECccC------CCccchhHHH----hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEE
Confidence 4688999999999 7777776633 33456655 99986543 34465212 22221 22
Q ss_pred cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC---------CcccCCCcccccCccccccC
Q psy17315 70 ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS---------AAAENFPFCTIDPNENNKVP 140 (561)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~---------~~~~~~~~~T~~~~~~~~~~ 140 (561)
+++..+.+........ ......+.+++++|.||||||||||+|.+.. ..++..||+|++++.. ..+
T Consensus 105 vSA~~~~gi~eL~~~l----~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~-~~~ 179 (190)
T cd01855 105 ISAKKGWGVEELINAI----KKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKI-PLG 179 (190)
T ss_pred EECCCCCCHHHHHHHH----HHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEE-ecC
Confidence 6666665554421111 1111245689999999999999999999743 4678899999998763 334
Q ss_pred CeEEEEeCCCc
Q psy17315 141 AFLNVVDIAGL 151 (561)
Q Consensus 141 ~~i~l~DtpG~ 151 (561)
..+.++||||+
T Consensus 180 ~~~~~~DtPG~ 190 (190)
T cd01855 180 NGKKLYDTPGI 190 (190)
T ss_pred CCCEEEeCcCC
Confidence 46899999996
No 80
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.44 E-value=5.8e-13 Score=123.90 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=94.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|++.+........|..+.+.... .. ....+.++||||...... .....++++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 75 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------ITSSYYRGA 75 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH-------HHHHHhCcC
Confidence 5899999999999999999998764333334333322211 11 123588999999643221 112346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|++..+ .+..+..+...+.... .+ ++||+|+.+...... .....+.... ..+.
T Consensus 76 ~~ii~v~d~~~~~----------s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~~ 141 (166)
T cd01869 76 HGIIIVYDVTDQE----------SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY---SEAQEFADEL-GIPF 141 (166)
T ss_pred CEEEEEEECcCHH----------HHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH---HHHHHHHHHc-CCeE
Confidence 9999999876321 2333333333333322 12 899999875443321 2222222222 3468
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|+..++.++.+..
T Consensus 142 ~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 142 LETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 81
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.44 E-value=1.4e-13 Score=130.12 Aligned_cols=151 Identities=21% Similarity=0.152 Sum_probs=91.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccc------cccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQ------GLGNAF 165 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~------~~~~~~ 165 (561)
....+|+++|.+|+|||||+|+|++.. ..+++.+|+|.+..... .+..+.++||||+........ .+...+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE-VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE-eCCcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 455799999999999999999999875 56788899998765432 234799999999864322111 111223
Q ss_pred ccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc-
Q psy17315 166 LSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV- 241 (561)
Q Consensus 166 l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~- 241 (561)
+.....+|++++|+|++..- . ..... +...+.....+ +.||+|+....... .....++......
T Consensus 95 l~~~~~~~~ii~vvd~~~~~---------~-~~~~~-~~~~~~~~~~pviiv~nK~D~~~~~~~~-~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPL---------K-ELDLE-MLEWLRERGIPVLIVLTKADKLKKSELN-KQLKKIKKALKKDA 162 (179)
T ss_pred HHhChhhcEEEEEecCCCCC---------C-HHHHH-HHHHHHHcCCCEEEEEECcccCCHHHHH-HHHHHHHHHHhhcc
Confidence 33334578999999875210 0 01111 11223333333 89999997322111 1112233333322
Q ss_pred CCCcEEEEEccCCCCH
Q psy17315 242 GTNLKVGIVGVPNVGK 257 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gk 257 (561)
.....+.+|+++|.|+
T Consensus 163 ~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGI 178 (179)
T ss_pred CCCceEEEECCCCCCC
Confidence 2347899999999985
No 82
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.43 E-value=1e-12 Score=122.26 Aligned_cols=148 Identities=21% Similarity=0.208 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcc----cCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAA----ENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~----~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+|+++|.+|||||||+|+|++..... ...+..|.....+ ...+..+.++||||...... .+...++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRS-------LWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHH-------HHHHHhCC
Confidence 48999999999999999998754211 1122333333222 12345789999999853221 22344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh----
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR---- 240 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~---- 240 (561)
+|++++|+|++..+ .+.... .+...+.. ...+ ++||+|...... ..........
T Consensus 74 ~~~~v~vvd~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~-----~~~~~~~~~~~~~~ 138 (167)
T cd04160 74 CHAIIYVIDSTDRE----------RFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS-----VEEIKEVFQDKAEE 138 (167)
T ss_pred CCEEEEEEECchHH----------HHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC-----HHHHHHHhcccccc
Confidence 99999999876321 111111 11111111 1112 899999864321 1222222221
Q ss_pred c--CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 241 V--GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 241 ~--~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
. .....+.+|+++|.|+.+++++|.++
T Consensus 139 ~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 139 IGRRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred ccCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence 1 23468999999999999999999753
No 83
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.43 E-value=8.8e-13 Score=123.48 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=90.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
..++|+++|.+|||||||+++|+.... ....|.++.+..........+.++||||...... .....++.||+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~a~~ 79 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP-------LWRHYYTGTQG 79 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccceEEEEECCEEEEEEECCCCHHHHH-------HHHHHhccCCE
Confidence 347999999999999999999986542 1122322222211122345699999999853321 12234688999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhhc----CCC
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----GTN 244 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----~~~ 244 (561)
+++|+|++... ...+....+.+.+... ..+ |+||+|+.+.. ...++....... ...
T Consensus 80 ii~v~D~t~~~---------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~ 145 (168)
T cd04149 80 LIFVVDSADRD---------RIDEARQELHRIINDREMRDALLLVFANKQDLPDAM-----KPHEIQEKLGLTRIRDRNW 145 (168)
T ss_pred EEEEEeCCchh---------hHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC-----CHHHHHHHcCCCccCCCcE
Confidence 99999986321 1111112222222211 112 89999986431 223333332211 123
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+||++|.|+..++++|.+
T Consensus 146 ~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 146 YVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEEeeCCCCCChHHHHHHHhc
Confidence 5688999999999999999975
No 84
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.43 E-value=2.8e-15 Score=137.36 Aligned_cols=146 Identities=19% Similarity=0.239 Sum_probs=84.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhhHhhhcccHHHHHHH-----HHHHHHHHhhCCc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIINEELRLKDVEHIEKE-----INKIEKLVQRGDK 318 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~~el~l~Dt~Gi~~~-----~~~l~~~~~~~~~ 318 (561)
+|++.|.||+|||+|||+|++.....+++ ||+| ++..+ +...+.++.++||||+... -+++...+...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~---pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~-- 76 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNW---PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS-- 76 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEES---TTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCC---CCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh--
Confidence 68999999999999999999997554444 5664 54443 4555678999999997431 01111111000
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
...|++..|+|+ .. .+.++..+.++.. .++|+|+|+||+|.-.
T Consensus 77 ------------------------~~~D~ii~VvDa-----------~~-l~r~l~l~~ql~e-~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 77 ------------------------EKPDLIIVVVDA-----------TN-LERNLYLTLQLLE-LGIPVVVVLNKMDEAE 119 (156)
T ss_dssp ------------------------TSSSEEEEEEEG-----------GG-HHHHHHHHHHHHH-TTSSEEEEEETHHHHH
T ss_pred ------------------------cCCCEEEEECCC-----------CC-HHHHHHHHHHHHH-cCCCEEEEEeCHHHHH
Confidence 000111111111 01 1233444444433 5899999999996533
Q ss_pred hhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 399 IKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
........+.+.+.+ +.|++++||+++.|+++|.+
T Consensus 120 ~~g~~id~~~Ls~~L-----g~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 120 RKGIEIDAEKLSERL-----GVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp HTTEEE-HHHHHHHH-----TS-EEEEBTTTTBTHHHHHH
T ss_pred HcCCEECHHHHHHHh-----CCCEEEEEeCCCcCHHHHHh
Confidence 222233456666665 78999999999999988744
No 85
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.43 E-value=4.2e-13 Score=124.04 Aligned_cols=136 Identities=25% Similarity=0.301 Sum_probs=93.2
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|.|+|++.| ..+.+..+.+ .....++|.+ +||.+.+..+.|..+.+..+..+ .+++.+.+.
T Consensus 13 aD~vl~V~D~~~~------~~~~~~~l~~--~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi 84 (156)
T cd01859 13 SDVVLEVLDARDP------ELTRSRKLER--YVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGT 84 (156)
T ss_pred CCEEEEEeeCCCC------cccCCHHHHH--HHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccH
Confidence 4678999999999 7777766654 1112356766 99998766677764444334333 677766665
Q ss_pred CCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCc
Q psy17315 79 KKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGL 151 (561)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~ 151 (561)
+.......... .......+++++|.||+|||||+|+|.+.. ..+++.+|+|++.+. ...+..++++||||+
T Consensus 85 ~~L~~~l~~~~-~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~DtpGi 156 (156)
T cd01859 85 KILRRTIKELA-KIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL-VKITSKIYLLDTPGV 156 (156)
T ss_pred HHHHHHHHHHH-hhcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE-EEcCCCEEEEECcCC
Confidence 44222221111 122345789999999999999999999876 678889999977543 334557999999996
No 86
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.43 E-value=1.1e-12 Score=123.27 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=91.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
...+|+++|.+|||||||+|+|++.. ....+..|...... ......+.++||||...... .+...++.+|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~--~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~~d 83 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTL--EYEGYKLNIWDVGGQKTLRP-------YWRNYFESTD 83 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEE--EECCEEEEEEECCCCHHHHH-------HHHHHhCCCC
Confidence 45789999999999999999999875 23333333222111 11234689999999753221 1234468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhH-HHHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh----cC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VG 242 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~ 242 (561)
++++|+|++..+. +... ..+...+.. ...+ ++||+|+.+.. ........... ..
T Consensus 84 ~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~ 148 (173)
T cd04154 84 ALIWVVDSSDRLR----------LDDCKRELKELLQEERLAGATLLILANKQDLPGAL-----SEEEIREALELDKISSH 148 (173)
T ss_pred EEEEEEECCCHHH----------HHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-----CHHHHHHHhCccccCCC
Confidence 9999998763221 1111 112222211 1112 89999997432 22333333322 13
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+.+|+++|.|++.+++++.+
T Consensus 149 ~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 149 HWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ceEEEeccCCCCcCHHHHHHHHhc
Confidence 446899999999999999999864
No 87
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.42 E-value=6.5e-13 Score=122.25 Aligned_cols=158 Identities=20% Similarity=0.146 Sum_probs=101.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc-cccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~ 171 (561)
..+|+++|.||+|||||+|+|++.. +.+.+.+.+|+....... ....+.++||||+..+... ...+.......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 3679999999999999999999987 556666777765544322 2246889999998754421 11122223445788
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+|++++|+|++.. .......+.+.+.....+ +.||+|+.... ......+..+.........+.
T Consensus 83 ~d~i~~v~d~~~~-----------~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~ 148 (168)
T cd04163 83 VDLVLFVVDASEP-----------IGEGDEFILELLKKSKTPVILVLNKIDLVKDK---EDLLPLLEKLKELGPFAEIFP 148 (168)
T ss_pred CCEEEEEEECCCc-----------cCchHHHHHHHHHHhCCCEEEEEEchhccccH---HHHHHHHHHHHhccCCCceEE
Confidence 9999999987632 011111222233332222 89999997311 111222344444444567899
Q ss_pred EEccCCCCHHHHHHHHHhh
Q psy17315 249 IVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~ 267 (561)
+|++++.|...++++|.+.
T Consensus 149 ~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 149 ISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEeccCCChHHHHHHHHhh
Confidence 9999999999999999764
No 88
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.42 E-value=1.2e-12 Score=121.30 Aligned_cols=147 Identities=15% Similarity=0.145 Sum_probs=85.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
+||+++|.+|||||||++++...... ...|.+.............+.++||||..... ..+...++.||+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~~i 72 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGLI 72 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCCEEE
Confidence 47999999999999999999654421 22232211111111223568999999974322 12234579999999
Q ss_pred EEecccccchhhhccchhhHhhhH-HHHHHHHHH--h-cch---hhccccccCcCCCCCccHHHHHHHhhh----cCCCc
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNL-KLLETRIRD--L-RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VGTNL 245 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~--~-~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~~~~ 245 (561)
+|+|++..+ .++.. +.+.+.+.. . ..+ ++||+|+.+... ..++...... .....
T Consensus 73 ~v~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~i~~~~~~~~~~~~~~~ 137 (159)
T cd04150 73 FVVDSNDRE----------RIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-----AAEVTDKLGLHSLRNRNWY 137 (159)
T ss_pred EEEeCCCHH----------HHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-----HHHHHHHhCccccCCCCEE
Confidence 999986322 11111 112222211 1 112 899999964321 1122111111 12234
Q ss_pred EEEEEccCCCCHHHHHHHHHh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~ 266 (561)
.+.+||++|.|+++++++|.+
T Consensus 138 ~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 138 IQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEeeCCCCCCHHHHHHHHhc
Confidence 568999999999999999975
No 89
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.42 E-value=4.3e-13 Score=143.88 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=99.0
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccc-ccccc
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLG-NAFLS 167 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~-~~~l~ 167 (561)
....+++|+++|.||||||||+|+|++.. ..++++||+|++..... ..+..+.++||||+......-+..+ .....
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 34567899999999999999999999987 67899999999875542 2345689999999964332111111 22345
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.++++|++++|+|++.... .+.. +...+.....+ |+||+|+.+. ....+. .. ...
T Consensus 279 ~~~~aD~il~V~D~s~~~s----------~~~~--~l~~~~~~~~piIlV~NK~Dl~~~------~~~~~~---~~-~~~ 336 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLT----------KDDF--LIIDLNKSKKPFILVLNKIDLKIN------SLEFFV---SS-KVL 336 (442)
T ss_pred HHhhCCEEEEEEECCCCCC----------hhHH--HHHHHhhCCCCEEEEEECccCCCc------chhhhh---hh-cCC
Confidence 6789999999999863211 1111 11122222222 8999999643 111111 11 112
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++ .|+..+++.+.+..
T Consensus 337 ~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 337 NSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred ceEEEEEec-CCHHHHHHHHHHHH
Confidence 467899998 57777777776653
No 90
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.42 E-value=1.3e-12 Score=122.29 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=88.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
+|+++|.+|||||||+|+|++.... . +..|...... ......+.++||||..... ..+...++.+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-------~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR-------PLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-C--cCCcCceeEEEEEECCEEEEEEECCCChhcc-------hHHHHHhccCCEE
Confidence 5899999999999999999976421 1 2223222111 1234578999999975322 1233456889999
Q ss_pred EEEecccccchhhhccchhhHhhhHHHHHHHHHH--hc-ch---hhccccccCcCCCCCccHHHHHHHhhhcC-----CC
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD--LR-RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG-----TN 244 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~-~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~-----~~ 244 (561)
++|+|++..+.. .+-...+.+.+.. .. .+ ++||+|+... ........+..... ..
T Consensus 71 i~V~D~s~~~s~---------~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~ 136 (169)
T cd04158 71 VFVVDSSHRDRV---------SEAHSELAKLLTEKELRDALLLIFANKQDVAGA-----LSVEEMTELLSLHKLCCGRSW 136 (169)
T ss_pred EEEEeCCcHHHH---------HHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-----CCHHHHHHHhCCccccCCCcE
Confidence 999988642211 1111111112211 11 12 8999998632 12222333222111 12
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.+|+++|.|+.+++++|.+...
T Consensus 137 ~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 137 YIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred EEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999988743
No 91
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.42 E-value=5.5e-13 Score=123.69 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=85.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
+|+++|.||||||||+|+|+|...... .|.... .... .+|||||...... .+...+...++.+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~~----~~~~v~---~~~~--~~iDtpG~~~~~~---~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLAR----KTQAVE---FNDK--GDIDTPGEYFSHP---RWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccCc----cceEEE---ECCC--CcccCCccccCCH---HHHHHHHHHHhcCCEEEE
Confidence 699999999999999999998652111 111111 1111 2699999864432 122233445789999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcC-CCcEEEEEc
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG-TNLKVGIVG 251 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~-~~~~i~isg 251 (561)
|+|++..+.. .. .++... ..+ +.||+|+.+. ....+........ ..+.+.+|+
T Consensus 71 v~d~~~~~s~---------~~------~~~~~~~~~~~ii~v~nK~Dl~~~------~~~~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 71 VHGANDPESR---------LP------AGLLDIGVSKRQIAVISKTDMPDA------DVAATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred EEeCCCcccc---------cC------HHHHhccCCCCeEEEEEccccCcc------cHHHHHHHHHHcCCCCCEEEEEC
Confidence 9998643211 00 011111 112 8999998641 1223333333333 258899999
Q ss_pred cCCCCHHHHHHHHHhhc
Q psy17315 252 VPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 252 ~~~~Gks~l~~~l~~~~ 268 (561)
++|.|++.|+.++.+..
T Consensus 130 ~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 130 HDPQSVQQLVDYLASLT 146 (158)
T ss_pred CCccCHHHHHHHHHHhc
Confidence 99999999999998764
No 92
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.41 E-value=1.2e-12 Score=121.59 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=93.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|+|.+........|.++.+.... ... ...+.++||||...... + ....++.+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~~~ 76 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA----I---TSAYYRGA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH----H---HHHHHCCC
Confidence 5899999999999999999998774433344444332221 111 23588999999753221 1 12345789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .+..+..+...+.+... + |+||+|+....... ......+.... ....
T Consensus 77 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~~ 142 (165)
T cd01868 77 VGALLVYDITKKQ----------TFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP---TEEAKAFAEKN-GLSF 142 (165)
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC---HHHHHHHHHHc-CCEE
Confidence 9999999875311 23333333333333221 2 89999987543222 22233333222 3467
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..+++++.+.
T Consensus 143 ~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 143 IETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999865
No 93
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.41 E-value=3.2e-13 Score=141.54 Aligned_cols=135 Identities=22% Similarity=0.204 Sum_probs=97.6
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCCh----HHHHHHHH-HHHhcCCC---c--
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGP----KAPKRRKQ-HLSDKLRP---K-- 69 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~----~~~~~w~~-~l~~~~~~---~-- 69 (561)
.+.+++.|+|++++ .++.++.+.+ ..+++|.+ +||.++ +..+.|++ +++..+.. +
T Consensus 63 ~~~~Il~VvD~~d~------~~s~~~~l~~----~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~ 132 (360)
T TIGR03597 63 SNALIVYVVDIFDF------EGSLIPELKR----FVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIIL 132 (360)
T ss_pred CCcEEEEEEECcCC------CCCccHHHHH----HhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEE
Confidence 34588999999999 9999999988 55677776 999865 35677874 45555542 2
Q ss_pred cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC------CcccCCCcccccCccccccCCeE
Q psy17315 70 ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS------AAAENFPFCTIDPNENNKVPAFL 143 (561)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~------~~~~~~~~~T~~~~~~~~~~~~i 143 (561)
+++..+.+........... ..+.++++||.||||||||||+|++.. ..+++.||+|++... ...+..+
T Consensus 133 vSAk~g~gv~eL~~~l~~~-----~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~-~~~~~~~ 206 (360)
T TIGR03597 133 VSAKKGNGIDELLDKIKKA-----RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE-IPLDDGH 206 (360)
T ss_pred ecCCCCCCHHHHHHHHHHH-----hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE-EEeCCCC
Confidence 5666665544321111111 124689999999999999999999753 578999999998765 3344568
Q ss_pred EEEeCCCcccCC
Q psy17315 144 NVVDIAGLVKGA 155 (561)
Q Consensus 144 ~l~DtpG~~~~~ 155 (561)
.++||||+....
T Consensus 207 ~l~DtPG~~~~~ 218 (360)
T TIGR03597 207 SLYDTPGIINSH 218 (360)
T ss_pred EEEECCCCCChh
Confidence 999999998543
No 94
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.41 E-value=1.2e-12 Score=127.55 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=96.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc----cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||+|+|++........|..+.+.... .. ....+.+|||||...+. .+. -..+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~----~l~---~~~~~~ 73 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG----KML---DKYIYG 73 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH----HHH---HHHhhc
Confidence 4799999999999999999997764333334443332211 11 12468899999964322 122 233689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc------h---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR------S---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+|++++|+|.+..+ .++.+..+...+..... + |+||+|+.+..... ......+....+
T Consensus 74 ad~iilV~D~t~~~----------s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~---~~~~~~~~~~~~ 140 (215)
T cd04109 74 AHAVFLVYDVTNSQ----------SFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK---DDKHARFAQANG 140 (215)
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC---HHHHHHHHHHcC
Confidence 99999999876322 23444444444443321 1 89999997443322 222333332222
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
...+.+|+++|.|+..+++++.+....
T Consensus 141 -~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 141 -MESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred -CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357889999999999999999987543
No 95
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.41 E-value=1.5e-12 Score=121.16 Aligned_cols=150 Identities=16% Similarity=0.138 Sum_probs=91.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccC--ccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP--NEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~--~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|+|++........|..+.+. ... ......+.+|||||...... .....++.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~-------~~~~~~~~~ 74 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT-------ITTAYYRGA 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHccCC
Confidence 5899999999999999999998763222222221111 110 11124689999999753221 123446899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .++.+..+...+..... + |+||+|+.+..... ......+.... ..+.
T Consensus 75 ~~~l~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~~ 140 (165)
T cd01865 75 MGFILMYDITNEE----------SFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS---SERGRQLADQL-GFEF 140 (165)
T ss_pred cEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC---HHHHHHHHHHc-CCEE
Confidence 9999999875321 22233322233332221 1 89999997543322 12222222222 2358
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..++.++...
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 141 FEASAKENINVKQVFERLVDI 161 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999875
No 96
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.40 E-value=1.8e-12 Score=121.95 Aligned_cols=148 Identities=18% Similarity=0.110 Sum_probs=90.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
..+|+++|.+|||||||+++|++.. ....+..|.+... .......+.++||||..... ..+..+++.+|+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~ 85 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVYKNIRFLMWDIGGQESLR-------SSWNTYYTNTDA 85 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEECCeEEEEEECCCCHHHH-------HHHHHHhhcCCE
Confidence 4789999999999999999998765 3333333333221 12234579999999975322 223345689999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhh----cCCC
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VGTN 244 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~~~ 244 (561)
+++|+|++..+ ......+.+...+... ..+ ++||+|+.... ...++...+.. ....
T Consensus 86 vi~V~D~s~~~---------~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~-----~~~~i~~~l~~~~~~~~~~ 151 (174)
T cd04153 86 VILVIDSTDRE---------RLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM-----TPAEISESLGLTSIRDHTW 151 (174)
T ss_pred EEEEEECCCHH---------HHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC-----CHHHHHHHhCcccccCCce
Confidence 99999986422 1111111222222211 112 89999986421 12222222221 1223
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+|+++|.|+..++++|.+
T Consensus 152 ~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 152 HIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEEecccCCCCCHHHHHHHHhc
Confidence 5789999999999999999975
No 97
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.40 E-value=6.5e-13 Score=127.06 Aligned_cols=160 Identities=20% Similarity=0.148 Sum_probs=99.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCccc------ccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEG------QGLGNAF 165 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~ 165 (561)
...++|+++|.+|||||||+|+|++.. ..+++.+|+|+..... ..+.++.++||||+....... ..+...+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFF-EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEE-ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 355789999999999999999999874 6778889998876542 234679999999975322111 1112233
Q ss_pred ccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 166 LSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 166 l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+.....++++++|+|+.... ..... .+.+.+.....+ +.||+|+....... .....+.......
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~--------~~~~~---~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~-~~~~~i~~~l~~~- 167 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPL--------KELDL---QMIEWLKEYGIPVLIVLTKADKLKKGERK-KQLKKVRKALKFG- 167 (196)
T ss_pred HHhCccceEEEEEEecCCCC--------CHHHH---HHHHHHHHcCCcEEEEEECcccCCHHHHH-HHHHHHHHHHHhc-
Confidence 44445668888998765211 00000 111222332222 89999986321110 0011122222221
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.+||+++.|...+++.|.+.
T Consensus 168 ~~~~~~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 168 DDEVILFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998764
No 98
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.40 E-value=1.6e-12 Score=120.04 Aligned_cols=149 Identities=18% Similarity=0.139 Sum_probs=87.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC---cccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA---AAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~---~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
+|+++|.+|||||||+++|++... ...+..|.+.... ......+.++||||...... .+...++.+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~--~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~ 71 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF--EKGNLSFTAFDMSGQGKYRG-------LWEHYYKNIQG 71 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE--EECCEEEEEEECCCCHhhHH-------HHHHHHccCCE
Confidence 489999999999999999998642 2334444332211 12345689999999753321 12234688999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHHHHHH--HHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc----CCCc
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKLLETR--IRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----GTNL 245 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----~~~~ 245 (561)
+++|+|++...... .....++.+.+. +.....+ ++||+|+.+.. ....+...+... ....
T Consensus 72 ii~v~D~~~~~~~~------~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-----~~~~~~~~l~~~~~~~~~~~ 140 (162)
T cd04157 72 IIFVIDSSDRLRLV------VVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-----TAVKITQLLGLENIKDKPWH 140 (162)
T ss_pred EEEEEeCCcHHHHH------HHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-----CHHHHHHHhCCccccCceEE
Confidence 99999986322100 001111111110 0111122 99999997432 122233222211 1224
Q ss_pred EEEEEccCCCCHHHHHHHHHh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~ 266 (561)
.+.+|+++|.|++.++++|.+
T Consensus 141 ~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 141 IFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEeeCCCCCchHHHHHHHhc
Confidence 678999999999999999865
No 99
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.40 E-value=1.8e-12 Score=121.14 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=93.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCccc--CCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAE--NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~--~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|++++...... +..|.+...... ......+.++||||..... ......++.+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR-------SITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhccC
Confidence 6899999999999999999998763322 222332221111 1112368899999954221 1123456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|++.. ..++.+..+...+..... + |+||+|+.+.... .......+.... ....
T Consensus 78 d~il~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~---~~~~~~~~~~~~-~~~~ 143 (168)
T cd01866 78 AGALLVYDITRR----------ETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREV---SYEEGEAFAKEH-GLIF 143 (168)
T ss_pred CEEEEEEECCCH----------HHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCC---CHHHHHHHHHHc-CCEE
Confidence 999999987632 223333333333333221 1 8999999753322 222233332222 3357
Q ss_pred EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+|+..|.|++.++..+....+
T Consensus 144 ~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 144 METSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999987643
No 100
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.39 E-value=2e-12 Score=122.95 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=91.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
....+|+++|.+|||||||+|+|.+.. ..+.+..+.+.... ...+..+.++||||...... .+..+++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~a 85 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEEL--AIGNIKFTTFDLGGHQQARR-------LWKDYFPEV 85 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEE--EECCEEEEEEECCCCHHHHH-------HHHHHhCCC
Confidence 455899999999999999999999875 22222222221111 12245688999999753321 223456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhhc-----
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----- 241 (561)
|++++|+|++..+. .......+.+.+.. ...+ ++||+|+.... ...++...++..
T Consensus 86 d~ii~vvD~~~~~~---------~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-----~~~~i~~~l~l~~~~~~ 151 (184)
T smart00178 86 NGIVYLVDAYDKER---------FAESKRELDALLSDEELATVPFLILGNKIDAPYAA-----SEDELRYALGLTNTTGS 151 (184)
T ss_pred CEEEEEEECCcHHH---------HHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC-----CHHHHHHHcCCCccccc
Confidence 99999999863221 11111111111111 1112 99999986321 223333332211
Q ss_pred ------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 ------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+....+.+|+++|.|++.++++|.++
T Consensus 152 ~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 152 KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 34457999999999999999999864
No 101
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.39 E-value=8.8e-13 Score=146.39 Aligned_cols=146 Identities=24% Similarity=0.281 Sum_probs=99.6
Q ss_pred EcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc--ccccccccccccccCCEEEEE
Q psy17315 103 GVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISACDAIFHL 178 (561)
Q Consensus 103 G~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~~D~il~V 178 (561)
|.||||||||+|+|++....++++||+|.+...+. ..+..+.++||||..+.... .+.+...++. .+.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLL-NEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHh-hcCCCEEEEE
Confidence 88999999999999998888999999999876542 23457899999999754321 1122222221 2578999999
Q ss_pred ecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCC
Q psy17315 179 CKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNV 255 (561)
Q Consensus 179 vD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~ 255 (561)
+|++.. .+.+... .++.+...+ ++||+|+.++.+... +.+.+++.. ..+.+.+|+++|.
T Consensus 80 vDat~l------------er~l~l~-~ql~~~~~PiIIVlNK~Dl~~~~~i~~-d~~~L~~~l----g~pvv~tSA~tg~ 141 (591)
T TIGR00437 80 VDASNL------------ERNLYLT-LQLLELGIPMILALNLVDEAEKKGIRI-DEEKLEERL----GVPVVPTSATEGR 141 (591)
T ss_pred ecCCcc------------hhhHHHH-HHHHhcCCCEEEEEehhHHHHhCCChh-hHHHHHHHc----CCCEEEEECCCCC
Confidence 988631 1122221 233333444 899999976555432 222233322 2478999999999
Q ss_pred CHHHHHHHHHhh
Q psy17315 256 GKSTFFNVLTKR 267 (561)
Q Consensus 256 Gks~l~~~l~~~ 267 (561)
|++++++++.+.
T Consensus 142 Gi~eL~~~i~~~ 153 (591)
T TIGR00437 142 GIERLKDAIRKA 153 (591)
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
No 102
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.39 E-value=2.4e-12 Score=120.13 Aligned_cols=152 Identities=17% Similarity=0.112 Sum_probs=93.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.||||||||+|++++........|..+.+.... .. ....+.++||||...... .....+++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------~~~~~~~~ 75 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-------ITTAYYRG 75 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH-------HHHHHhCC
Confidence 36899999999999999999998763332223222221111 11 123688999999643221 12344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.. ..++.+..+...+..... + ++||+|+.+..... ......+.... ..+
T Consensus 76 ad~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~ 141 (167)
T cd01867 76 AMGIILVYDITDE----------KSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS---KEEGEALADEY-GIK 141 (167)
T ss_pred CCEEEEEEECcCH----------HHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC---HHHHHHHHHHc-CCE
Confidence 9999999987532 223333333333333221 1 89999998543322 22222332222 235
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+.+|.|+..++.++.+..
T Consensus 142 ~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 142 FLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
No 103
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.38 E-value=2.9e-12 Score=122.54 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=94.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCccc-ccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCT-IDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T-~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||++++++.......++.++ .+.... ... ...+.+|||||...... .....++.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 73 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS-------VTHAYYRD 73 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH-------hhHHHccC
Confidence 4799999999999999999998764433333222 221110 111 23688999999643221 12334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.. ..+..+..+...+.+... + ++||+|+....... ......+.... ..+
T Consensus 74 ad~~i~v~D~~~~----------~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~---~~~~~~l~~~~-~~~ 139 (191)
T cd04112 74 AHALLLLYDITNK----------ASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVK---REDGERLAKEY-GVP 139 (191)
T ss_pred CCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccC---HHHHHHHHHHc-CCe
Confidence 9999999987532 122333333333443322 1 89999997432221 12233333222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
.+.+|+++|.|++.++.++.+.....
T Consensus 140 ~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 140 FMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 79999999999999999999876443
No 104
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.38 E-value=3.5e-12 Score=118.96 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=93.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c-c--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N-K--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~-~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|+|.+........+..+.+.... . . ....+.++||||...... .....++.+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~ 73 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS-------LGVAFYRGA 73 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh-------HHHHHhcCC
Confidence 4799999999999999999998763322222222111111 1 1 123477999999643221 123446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
|++++|+|+...+ .+..+..+...+.... .+ ++||+|+...... .......+....+
T Consensus 74 d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 140 (172)
T cd01862 74 DCCVLVYDVTNPK----------SFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV---STKKAQQWCQSNG 140 (172)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc---CHHHHHHHHHHcC
Confidence 9999999875321 1222322222222211 12 8899999852221 2333444544444
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
....+.+|+++|.|+..+++++.+..+
T Consensus 141 ~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 141 NIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999987643
No 105
>COG2262 HflX GTPases [General function prediction only]
Probab=99.38 E-value=7.4e-14 Score=142.94 Aligned_cols=160 Identities=20% Similarity=0.191 Sum_probs=107.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh-hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII-NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~-~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
.-+.|++.|+||+|||+|+|.|++......+..| .|.||. +.+.+. +..+.+.||.|+ ++.++......++.+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF--ATLdpttR~~~l~~g~~vlLtDTVGF---I~~LP~~LV~AFksT 265 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLF--ATLDPTTRRIELGDGRKVLLTDTVGF---IRDLPHPLVEAFKST 265 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecccccc--ccccCceeEEEeCCCceEEEecCccC---cccCChHHHHHHHHH
Confidence 4578999999999999999999988766666655 566776 445555 467999999999 777777776666666
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+++. .++|+++||+|+.+. ......+....+|..+.. ..+|+|+|+||+ |.+.
T Consensus 266 LEE~------------------~~aDlllhVVDaSdp------~~~~~~~~v~~vL~el~~-~~~p~i~v~NKi--D~~~ 318 (411)
T COG2262 266 LEEV------------------KEADLLLHVVDASDP------EILEKLEAVEDVLAEIGA-DEIPIILVLNKI--DLLE 318 (411)
T ss_pred HHHh------------------hcCCEEEEEeecCCh------hHHHHHHHHHHHHHHcCC-CCCCEEEEEecc--cccC
Confidence 5554 445788877775332 111111223445666654 579999999999 4443
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
. ......+.. . ....|++||++|.|++.|.+...
T Consensus 319 ~-~~~~~~~~~----~--~~~~v~iSA~~~~gl~~L~~~i~ 352 (411)
T COG2262 319 D-EEILAELER----G--SPNPVFISAKTGEGLDLLRERII 352 (411)
T ss_pred c-hhhhhhhhh----c--CCCeEEEEeccCcCHHHHHHHHH
Confidence 1 112222222 1 12589999999999988755443
No 106
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.38 E-value=3e-12 Score=118.10 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=86.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
+|+++|.+|||||||+|++++.. ....+..+.+..... ......+.++||||..... ..+...++.+|+++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~~~iv 72 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQ-LEKHLSLTVWDVGGQEKMR-------TVWKCYLENTDGLV 72 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEE-eCCceEEEEEECCCCHhHH-------HHHHHHhccCCEEE
Confidence 48999999999999999999876 333333332221111 1123468999999975322 12334568899999
Q ss_pred EEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhh--hc---CCC
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLG--RV---GTN 244 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~--~~---~~~ 244 (561)
+|+|++... .+...+ .+.+.+.. ...+ ++||+|+.... ....+..... .. ...
T Consensus 73 ~v~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~ 137 (160)
T cd04156 73 YVVDSSDEA----------RLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-----TAEEITRRFKLKKYCSDRDW 137 (160)
T ss_pred EEEECCcHH----------HHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-----CHHHHHHHcCCcccCCCCcE
Confidence 999876321 111111 11222211 1112 99999996321 1222222211 11 123
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+.+|+++|.|++.++++|.+
T Consensus 138 ~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEEecccccCCChHHHHHHHhc
Confidence 4678999999999999999864
No 107
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.38 E-value=4.6e-12 Score=117.79 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=91.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..+|+++|.+|||||||++++.+........+..+.+.... ...+ ..+.++||||..... ......++.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~ 75 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR-------TITQSYYRS 75 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhcc
Confidence 36899999999999999999987652211111111111111 1111 368899999964221 112334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++... .+..+..+...+..... + |+||+|+.+.... .......+........
T Consensus 76 ~d~~llv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 142 (165)
T cd01864 76 ANGAIIAYDITRRS----------SFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREV---LFEEACTLAEKNGMLA 142 (165)
T ss_pred CCEEEEEEECcCHH----------HHHhHHHHHHHHHHhCCCCCcEEEEEECccccccccc---CHHHHHHHHHHcCCcE
Confidence 99999999876322 22233222222322211 1 8999999754332 2223333434444456
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..+++.+.+.
T Consensus 143 ~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 143 VLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999864
No 108
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.37 E-value=5.3e-12 Score=116.69 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=92.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--c--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--N--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.||||||||+|+|.+........|..+.+.... . .....+.++||||...... .....++.+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~~ 73 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS-------VTRSYYRGA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH-------hHHHHhcCC
Confidence 4799999999999999999998763332223222221111 1 1123588999999743221 123346789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .++++..+...+...... ++||+|..+.... .......+..... ...
T Consensus 74 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-~~~ 139 (161)
T cd04113 74 AGALLVYDITNRT----------SFEALPTWLSDARALASPNIVVILVGNKSDLADQREV---TFLEASRFAQENG-LLF 139 (161)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccC---CHHHHHHHHHHcC-CEE
Confidence 9999999876322 223333333333222211 8999999753322 2233333333333 578
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..+++++...
T Consensus 140 ~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 140 LETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 109
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.36 E-value=3.6e-12 Score=117.81 Aligned_cols=150 Identities=18% Similarity=0.137 Sum_probs=90.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c-----ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N-----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~-----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
++|+++|.+|+|||||+|++++........|..+.+.... . .....+.++||||...... + ....++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~ 73 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA----I---TKAYYR 73 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH----h---HHHHhc
Confidence 4799999999999999999998653222222222222111 0 1123689999999642221 1 233468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+........ .+...+.... ..+
T Consensus 74 ~~~~~v~v~d~~~~~----------s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~---~~~~~~~~~~-~~~ 139 (162)
T cd04106 74 GAQACILVFSTTDRE----------SFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN---EEAEALAKRL-QLP 139 (162)
T ss_pred CCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH---HHHHHHHHHc-CCe
Confidence 999999999875322 2233333222222211 11 899999975433221 2222222222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..++.+|.+.
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 140 LFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999764
No 110
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.36 E-value=5.7e-12 Score=116.74 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=91.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|+|++........|..+.+.... ......+.++||||..... .+. ...++.+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~---~~~~~~~ 73 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL----EVR---NEFYKDT 73 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH----HHH---HHHhccC
Confidence 4799999999999999999998773322223222221110 1123468899999974322 111 2235789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--------ch---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
|++++|+|.+.++ .+..+..+..++.... .+ |+||+|+.+.... .......+....
T Consensus 74 d~~ilv~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~ 140 (168)
T cd04119 74 QGVLLVYDVTDRQ----------SFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV---SEDEGRLWAESK 140 (168)
T ss_pred CEEEEEEECCCHH----------HHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccccc---CHHHHHHHHHHc
Confidence 9999999876321 2233333333332221 11 8999999742222 122222222222
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..+++++.+..
T Consensus 141 -~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 141 -GFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred -CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 24579999999999999999998764
No 111
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.36 E-value=6.2e-12 Score=116.33 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=91.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|++.+... +..++.++.+.... ... ...+.++||||...... + ....++.+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA----M---REQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH----H---HHHHHhhC
Confidence 6899999999999999999987653 23333333322111 111 23578999999753321 1 22345789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .++.+..+...+.... .+ ++||+|+.+..... ......+.... ..+
T Consensus 75 ~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~---~~~~~~~~~~~-~~~ 140 (164)
T cd04145 75 EGFLLVFSVTDRG----------SFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS---REEGQELARKL-KIP 140 (164)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec---HHHHHHHHHHc-CCc
Confidence 9999999876322 1223333333333221 12 89999997543221 12222232222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..+++++.+.
T Consensus 141 ~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 141 YIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHh
Confidence 7999999999999999999764
No 112
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.36 E-value=4.7e-12 Score=116.68 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=89.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
||+++|.+|||||||+|++++.. ....+..+.+.... ......+.++||||...... .+...++.+|+++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~~~~i 71 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETV--EYKNVSFTVWDVGGQDKIRP-------LWKHYYENTNGII 71 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEE--EECCEEEEEEECCCChhhHH-------HHHHHhccCCEEE
Confidence 58999999999999999999886 23333333333221 12245799999999753321 2233457889999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh----cCCCcE
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VGTNLK 246 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~~~~~ 246 (561)
+|+|++..+ ........+...+.. ...+ ++||+|..... ....+...... ....+.
T Consensus 72 ~v~D~~~~~---------~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 137 (158)
T cd00878 72 FVVDSSDRE---------RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-----SVSELIEKLGLEKILGRRWHI 137 (158)
T ss_pred EEEECCCHH---------HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-----CHHHHHHhhChhhccCCcEEE
Confidence 999986322 111111111111111 1112 89999997532 12223332222 134468
Q ss_pred EEEEccCCCCHHHHHHHHHh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~ 266 (561)
+.+|+++|.|...++++|..
T Consensus 138 ~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 138 QPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEeeCCCCCCHHHHHHHHhh
Confidence 99999999999999999865
No 113
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.36 E-value=3.8e-12 Score=118.50 Aligned_cols=150 Identities=19% Similarity=0.124 Sum_probs=92.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--c---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||++++.+.... ..++.++...... . .....+.+|||||...... .....+++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 74 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA-------VTRSYYRG 74 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHHHhcC
Confidence 68999999999999999999977522 1222221111100 1 1123688999999743221 12345689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.++ .++.+..+.+.+...... |+||+|+.+..... ......+... ....
T Consensus 75 ~~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~---~~~~~~~~~~-~~~~ 140 (166)
T cd04122 75 AAGALMVYDITRRS----------TYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT---YEEAKQFADE-NGLL 140 (166)
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC---HHHHHHHHHH-cCCE
Confidence 99999999876322 233333333333222211 89999997554332 2222223222 2346
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+.+++..+....
T Consensus 141 ~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 141 FLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998764
No 114
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.36 E-value=6.1e-12 Score=116.24 Aligned_cols=149 Identities=18% Similarity=0.190 Sum_probs=90.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|++.+.... ..++.++.+.... ... ...+.++||||...... +. -..++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~~ 73 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA----MR---DLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEEEEEEEEECCCccccch----HH---HHHhhcC
Confidence 58999999999999999999876522 2223333221111 111 23577899999754331 11 2235789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .++.+..+.+.+.... .+ ++||+|+.+.... .......+..... .+
T Consensus 74 ~~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-~~ 139 (163)
T cd04136 74 QGFVLVYSITSQS----------SFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVV---SREEGQALARQWG-CP 139 (163)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccee---cHHHHHHHHHHcC-Ce
Confidence 9999999875321 2233333333333321 12 8999998753222 1222222322222 56
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..++.++.+.
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 140 FYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHh
Confidence 7999999999999999999864
No 115
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.36 E-value=5.1e-12 Score=119.12 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=88.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
.++|+++|.+|||||||++++..... ....|.+..+..........+.++||||...... .+...+++||++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~ad~i 84 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-VTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRP-------LWRHYYTNTQGL 84 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CCcCCccccceEEEEECCEEEEEEECCCChhhHH-------HHHHHhCCCCEE
Confidence 47999999999999999999964432 1122322222111122334689999999753221 223346899999
Q ss_pred EEEecccccchhhhccchhhHhhhHHHHHHHHHH--hc-ch---hhccccccCcCCCCCccHHHHHHHhhh----cCCCc
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD--LR-RS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VGTNL 245 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~-~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~~~~ 245 (561)
++|+|++.++. ..+..+.+...+.+ .. .+ ++||+|+.+... ..++....+. .....
T Consensus 85 i~v~D~t~~~s---------~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~i~~~~~~~~~~~~~~~ 150 (175)
T smart00177 85 IFVVDSNDRDR---------IDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK-----AAEITEKLGLHSIRDRNWY 150 (175)
T ss_pred EEEEECCCHHH---------HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC-----HHHHHHHhCccccCCCcEE
Confidence 99999874221 11111222222211 11 12 899999864321 1222222211 12234
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+++++++|.+.
T Consensus 151 ~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 151 IQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 5689999999999999999765
No 116
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.36 E-value=2.1e-13 Score=108.76 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=62.8
Q ss_pred ceeccccCCCce----eccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCC
Q psy17315 467 LQYFFTAGQDEV----KAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDG 542 (561)
Q Consensus 467 li~~~t~~~~ev----~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 542 (561)
|+.+||..++.. ++..+|+|+|+.|+|..||+|+.+.|.+|.||+-+- +...|++|.+|+|+||
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~------------~~~gq~Vgl~~~L~d~ 68 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSV------------KHSPQRVGLDHVLEDE 68 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCC------------cCCCeECCCCCEecCC
Confidence 588999987764 999999999999999999999999999999998663 3356999999999999
Q ss_pred CEEEEE
Q psy17315 543 DIIFFK 548 (561)
Q Consensus 543 di~~~~ 548 (561)
|||+|.
T Consensus 69 DvVeI~ 74 (75)
T cd01666 69 DVVQIV 74 (75)
T ss_pred CEEEEe
Confidence 999984
No 117
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.35 E-value=1.8e-12 Score=124.07 Aligned_cols=153 Identities=15% Similarity=0.120 Sum_probs=93.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-------CcccCCCcccccCcccc--c--------------cCCeEEEEeCCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-------AAAENFPFCTIDPNENN--K--------------VPAFLNVVDIAGLVK 153 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-------~~~~~~~~~T~~~~~~~--~--------------~~~~i~l~DtpG~~~ 153 (561)
++|+++|.+|+|||||+|+|++.. ......+|+|.+..... . ....+.+|||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 369999999999999999999731 22333556776654321 1 145789999999732
Q ss_pred CCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCcc
Q psy17315 154 GAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 154 ~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~ 230 (561)
+...+...++.+|++++|+|++... .....+.+. .......+ ++||+|+........ .
T Consensus 81 -------~~~~~~~~~~~~d~vi~VvD~~~~~-------~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~~~~~-~ 141 (192)
T cd01889 81 -------LIRTIIGGAQIIDLMLLVVDATKGI-------QTQTAECLV----IGEILCKKLIVVLNKIDLIPEEERER-K 141 (192)
T ss_pred -------HHHHHHHHHhhCCEEEEEEECCCCc-------cHHHHHHHH----HHHHcCCCEEEEEECcccCCHHHHHH-H
Confidence 2334455567889999999876311 001111111 11112223 899999874322110 1
Q ss_pred HHHHHH----Hhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 231 EGEKKM----LLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 231 ~~~l~~----l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.. .... ....+.+.+|+++|.|+..|++++.+..
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 142 IEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 111211 1111 1345789999999999999999998874
No 118
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.35 E-value=5.1e-12 Score=117.63 Aligned_cols=150 Identities=18% Similarity=0.119 Sum_probs=88.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCC---cccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFP---FCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~---~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
++|+++|.+|||||||+|++++........| ..+............+.++||||...... + ....++.+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~~ 74 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA----M---QRLSISKGH 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH----H---HHHHhhcCC
Confidence 5899999999999999999997763221111 11111000011234688999999853321 1 123457889
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc------ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
++++|+|.+.. ..++.+..+.+.+.+.. .+ |+||+|+.+...... ....... .....
T Consensus 75 ~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~-~~~~~ 140 (165)
T cd04140 75 AFILVYSVTSK----------QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS---NEGAACA-TEWNC 140 (165)
T ss_pred EEEEEEECCCH----------HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH---HHHHHHH-HHhCC
Confidence 99999987532 22333333333333321 11 899999975322211 1111111 11223
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|+++|.|+..++++|.+.
T Consensus 141 ~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 141 AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred cEEEeecCCCCCHHHHHHHHHhc
Confidence 56899999999999999999764
No 119
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.35 E-value=6.3e-12 Score=116.48 Aligned_cols=149 Identities=16% Similarity=0.162 Sum_probs=90.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.||+++|.||||||||+|++.+..... .++.++.+.... ... ...+.++||||...... +. ...++.+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~---~~~~~~~ 72 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA----MR---DQYMRTG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH----HH---HHHHhhC
Confidence 379999999999999999999866322 222222221111 111 23578999999754321 11 2335788
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|++..+ .++.+..+...+... ..+ ++||+|+.+..... ......+.... ..+
T Consensus 73 ~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~ 138 (164)
T smart00173 73 EGFLLVYSITDRQ----------SFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVS---TEEGKELARQW-GCP 138 (164)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEc---HHHHHHHHHHc-CCE
Confidence 9999999876321 222333222232222 112 89999997543222 12222222222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..+++++.+.
T Consensus 139 ~~~~Sa~~~~~i~~l~~~l~~~ 160 (164)
T smart00173 139 FLETSAKERVNVDEAFYDLVRE 160 (164)
T ss_pred EEEeecCCCCCHHHHHHHHHHH
Confidence 7999999999999999999875
No 120
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=9.5e-12 Score=119.94 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=94.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c----ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||+|++++........|..+.+.... . .....+.+|||||..... ......+++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~ 73 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG-------GMTRVYYRG 73 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh-------hhHHHHhCC
Confidence 4799999999999999999997653222222222221111 1 112358899999974322 112334689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-------cch---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-------RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
+|++++|+|.+.++ .++.+..+...+... ..+ |+||+|+.+.... .......+....
T Consensus 74 a~~~ilv~D~t~~~----------s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~ 140 (201)
T cd04107 74 AVGAIIVFDVTRPS----------TFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK---DGEQMDQFCKEN 140 (201)
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc---CHHHHHHHHHHc
Confidence 99999999876322 223333333333221 111 8999999742222 223344444443
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.....+.+|+++|.|+..++.++.+...
T Consensus 141 ~~~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 141 GFIGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3356799999999999999999998753
No 121
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.35 E-value=1.1e-11 Score=114.44 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=92.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++++++|.||||||||+|+|++... ...+.++.+........ ....+.++||||...... + ....++.+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~~~ 73 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT----L---TSSYYRGA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh----h---hHHHhCCC
Confidence 4799999999999999999998763 23444444332221111 124689999999643221 1 12345789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+..+.+.+..... + ++||+|+..... .......+... ....
T Consensus 74 d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~----~~~~~~~~~~~-~~~~ 138 (161)
T cd01863 74 QGVILVYDVTRRD----------TFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREV----TREEGLKFARK-HNML 138 (161)
T ss_pred CEEEEEEECCCHH----------HHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccccc----CHHHHHHHHHH-cCCE
Confidence 9999999875321 12233333333333221 1 899999983321 12222222222 2345
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+.+++..+.+.
T Consensus 139 ~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 139 FIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEEecCCCCCHHHHHHHHHHh
Confidence 8999999999999999998764
No 122
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.35 E-value=5.6e-12 Score=117.14 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=92.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--c---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--K---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.|+++|.+|+|||||+|+|++........+++|.+..... . .+..+.++||||...... .....++.+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~-------~~~~~~~~~ 74 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN-------MRARGASLT 74 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH-------HHHHHHhhc
Confidence 5899999999999999999987754455567776543221 1 145799999999743221 112235789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh-----cCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR-----VGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~-----~~~~ 244 (561)
|++++|+|++... .......+. .+.....+ ++||+|+..... ......+...... ....
T Consensus 75 d~il~v~d~~~~~-------~~~~~~~~~----~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 141 (168)
T cd01887 75 DIAILVVAADDGV-------MPQTIEAIK----LAKAANVPFIVALNKIDKPNANP--ERVKNELSELGLQGEDEWGGDV 141 (168)
T ss_pred CEEEEEEECCCCc-------cHHHHHHHH----HHHHcCCCEEEEEEceecccccH--HHHHHHHHHhhccccccccCcC
Confidence 9999999886321 011111111 12223333 899999873210 0011112222111 1235
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+.+|.|+..|++++.+.
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 142 QIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred cEEEeecccCCCHHHHHHHHHHh
Confidence 78999999999999999999775
No 123
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.35 E-value=9.7e-12 Score=114.44 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=89.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|++++.... ..++.++.+.... ...+ ..+.+|||||...... + ....++.+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----l---~~~~~~~~ 73 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA----M---RDQYMRTG 73 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH----H---HHHHHhcC
Confidence 57999999999999999999976622 1222222221111 1111 2477899999743221 1 22346789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.. ..++.++.+...+.... .+ |+||+|+.++.. .......+.... ..+
T Consensus 74 ~~~i~v~~~~~~----------~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~-~~~ 138 (162)
T cd04138 74 EGFLCVFAINSR----------KSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV----SSRQGQDLAKSY-GIP 138 (162)
T ss_pred CEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccee----cHHHHHHHHHHh-CCe
Confidence 999999976521 12333433333333321 12 899999975311 122222222222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..++.++.+.
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 139 YIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred EEEecCCCCCCHHHHHHHHHHH
Confidence 7899999999999999999864
No 124
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.35 E-value=6.1e-12 Score=117.17 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=91.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccC--CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVP--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..+++++|.+|||||||+++|++........+..+.+.... ...+ ..+.++||||...... .....++.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~ 79 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS-------ITQSYYRS 79 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHHHhcC
Confidence 36899999999999999999997653333333333222111 1112 3578899999743221 11234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+..+ .+..+..+...+...... ++||+|+......... ....+. ......
T Consensus 80 ~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~---~~~~~~-~~~~~~ 145 (169)
T cd04114 80 ANALILTYDITCEE----------SFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQ---RAEEFS-DAQDMY 145 (169)
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHH---HHHHHH-HHcCCe
Confidence 99999999875311 122222233333332221 8999998754333221 112222 223356
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+.+|.|...+++++...
T Consensus 146 ~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 146 YLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999864
No 125
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.34 E-value=1.8e-13 Score=146.89 Aligned_cols=171 Identities=16% Similarity=0.205 Sum_probs=97.9
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
+..-..|.++|.+|+|||||+|.|++..+..++++++ |++|... +...+..+.+|||||+.+..+.-....
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfT--Tl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg------ 227 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFT--TLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLG------ 227 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcc--cccceEEEEEECCeEEEEEECCCCccccchhhHHH------
Confidence 4555789999999999999999999987766666552 3466654 334456799999999843211100000
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHH--HHHHHhhh----------hccCCce
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNAD--IEHLNKLN----------LLTAKTQ 387 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e--~~~l~~~~----------~l~~kP~ 387 (561)
.+++ +++.+++++++|+|.... ...+ ..+.+.+ ...|..+. .+..+|+
T Consensus 228 --~~fL--------------rhieradvLv~VVD~s~~---e~~r-dp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~ 287 (500)
T PRK12296 228 --LDFL--------------RHIERCAVLVHVVDCATL---EPGR-DPLSDIDALEAELAAYAPALDGDLGLGDLAERPR 287 (500)
T ss_pred --HHHH--------------HHHHhcCEEEEEECCccc---cccc-CchhhHHHHHHHHHHhhhcccccchhhhhcCCCE
Confidence 0111 123344555555543210 0000 0111100 01121111 2357999
Q ss_pred EEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 388 IYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 388 iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
|+|+||+|. .+ .....+.+.+.+... +.++++|||+++.|+.+|.....+.+
T Consensus 288 IVVlNKiDL--~d-a~el~e~l~~~l~~~--g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 288 LVVLNKIDV--PD-ARELAEFVRPELEAR--GWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred EEEEECccc--hh-hHHHHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999954 32 222334444444433 56899999999999999876655443
No 126
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.34 E-value=1.7e-11 Score=114.21 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=90.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc---cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
++|+++|.+|||||||+|+|++........|......... ......+.++||||...... +. ...++.+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~----~~---~~~~~~~~ 73 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR----LR---PLSYPNTD 73 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----cc---hhhcCCCC
Confidence 4799999999999999999998764222222111110000 11123588999999864321 11 12347899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCC--------CccHHHHHHHhhh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPK--------KTDEGEKKMLLGR 240 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~--------~~~~~~l~~l~~~ 240 (561)
++++|+|.+..+ ........+...+.... .+ |+||+|+.+..... .............
T Consensus 74 ~~i~v~d~~~~~---------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 74 VFLICFSVDSPS---------SFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred EEEEEEECCCHH---------HHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 999999875311 11111111222222222 22 89999998654321 1112233333333
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
......+.+|+++|.|+..+++++.+
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 44447899999999999999998864
No 127
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.34 E-value=7e-12 Score=115.40 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=91.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+|++++|.+|||||||+|+|.+........+.++...... . .....+.++||||...... +... .++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~~~---~~~~~ 73 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA----LGPI---YYRDA 73 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH----hhHH---HhccC
Confidence 4799999999999999999998763322222222221111 1 1123588999999643221 1122 24789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+..+ .++.+..+...+..... + ++||+|+....... ......+... .....
T Consensus 74 ~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~---~~~~~~~~~~-~~~~~ 139 (162)
T cd04123 74 DGAILVYDITDAD----------SFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVS---KSEAEEYAKS-VGAKH 139 (162)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC---HHHHHHHHHH-cCCEE
Confidence 9999999875322 22333333333333322 2 89999998543322 2223333222 23456
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|++.+++++.+.
T Consensus 140 ~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 140 FETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 899999999999999999764
No 128
>PRK09866 hypothetical protein; Provisional
Probab=99.34 E-value=3e-13 Score=145.81 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=30.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTI 131 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~ 131 (561)
+.++++|.+|+|||||+|+|.|.. ..+++.|.+|.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 789999999999999999999988 56667777665
No 129
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.34 E-value=2.2e-12 Score=116.82 Aligned_cols=140 Identities=17% Similarity=0.129 Sum_probs=83.0
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
||+++|.||||||||+|+|++.... ++. |.. .... ..++||||..... ..+.......++++|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~~----~~~~--~~~iDt~G~~~~~---~~~~~~~~~~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQA----VEYN--DGAIDTPGEYVEN---RRLYSALIVTAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-cee----EEEc--CeeecCchhhhhh---HHHHHHHHHHhhcCCEEEE
Confidence 6999999999999999999987532 111 111 1111 2689999973211 1111122235789999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCH
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGK 257 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gk 257 (561)
|+|++....... . .+.+.+.....-++||+|+.+... ...............+.+.+|+++|.|+
T Consensus 69 v~d~~~~~s~~~----------~-~~~~~~~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 69 VQSATDPESRFP----------P-GFASIFVKPVIGLVTKIDLAEADV----DIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred EecCCCCCcCCC----------h-hHHHhccCCeEEEEEeeccCCccc----CHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 999864332110 0 111111111111889999874211 1222333333333346789999999999
Q ss_pred HHHHHHHH
Q psy17315 258 STFFNVLT 265 (561)
Q Consensus 258 s~l~~~l~ 265 (561)
+.+++++.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
No 130
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.34 E-value=6.8e-12 Score=115.95 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=91.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|+|++........+..+.+.... ... ...+.++||||...... .....++.+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~ 73 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS-------ITSSYYRGA 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHhCCC
Confidence 4799999999999999999998764333333333322111 111 13688999999642221 112335789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+... .+..+..+...+.... .+ ++||+|+.+..... ......+.... ....
T Consensus 74 d~~ilv~d~~~~~----------s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~---~~~~~~~~~~~-~~~~ 139 (164)
T smart00175 74 VGALLVYDITNRE----------SFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS---REEAEAFAEEH-GLPF 139 (164)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCC---HHHHHHHHHHc-CCeE
Confidence 9999999875311 1222222222222222 12 89999987532222 22222232222 2357
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+.+|.|+..+++++.+..
T Consensus 140 ~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 140 FETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998864
No 131
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.33 E-value=8.8e-12 Score=113.72 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCccc--CCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAE--NFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~--~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|+|++...... +..+.+....... .....+.++||||...... .....++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~ 73 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS-------ITPSYYRGA 73 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH-------HHHHHhcCC
Confidence 4799999999999999999998874332 3333333222111 1234688999999743221 223446789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|++.. ..+..+..+...+.... .+ ++||+|....... .......+... .....
T Consensus 74 d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~-~~~~~ 139 (159)
T cd00154 74 HGAILVYDITNR----------ESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV---STEEAQQFAKE-NGLLF 139 (159)
T ss_pred CEEEEEEECCCH----------HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc---cHHHHHHHHHH-cCCeE
Confidence 999999987531 12233333333333332 22 8999999722221 22333343333 34568
Q ss_pred EEEEccCCCCHHHHHHHHHh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~ 266 (561)
+.+|+.+|.|+..+++++.+
T Consensus 140 ~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 140 FETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EEEecCCCCCHHHHHHHHhC
Confidence 99999999999999999863
No 132
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.33 E-value=8.8e-12 Score=115.09 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=85.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
||+++|.+|||||||+++|+..... ...|............+..+.++||||.....+ .+...++.+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~ii~ 72 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRP-------YWRCYYSNTDAIIY 72 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHH-------HHHHHhcCCCEEEE
Confidence 5899999999999999999765521 112211111111112345789999999853221 22344678999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhhc----CCCcEE
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----GTNLKV 247 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----~~~~~i 247 (561)
|+|++.... .......+...+... ..+ ++||+|+.+.. ....+....... .....+
T Consensus 73 v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 73 VVDSTDRDR---------LGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-----SEAEISEKLGLSELKDRTWSIF 138 (158)
T ss_pred EEECCCHHH---------HHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-----CHHHHHHHhCccccCCCcEEEE
Confidence 998763211 000011111111111 122 89999987432 112222221111 123589
Q ss_pred EEEccCCCCHHHHHHHHHh
Q psy17315 248 GIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~ 266 (561)
.+|+++|.|+..++++|.+
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999999865
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.33 E-value=8.9e-12 Score=116.62 Aligned_cols=149 Identities=16% Similarity=0.076 Sum_probs=89.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
....+|+++|.+|||||||+|+|++.. ....+..|.+.... ...+..+.++||||..... ..+...++.+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i--~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 82 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTV--QSDGFKLNVWDIGGQRAIR-------PYWRNYFENT 82 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEE--EECCEEEEEEECCCCHHHH-------HHHHHHhcCC
Confidence 346899999999999999999999875 23333344332211 1224568899999974221 1223446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhhc----
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV---- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~---- 241 (561)
|++++|+|++... .+.... .+...+.. ...+ ++||+|..+.. ....+....+..
T Consensus 83 ~~ii~v~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----~~~~i~~~l~~~~~~~ 147 (173)
T cd04155 83 DCLIYVIDSADKK----------RLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-----PAEEIAEALNLHDLRD 147 (173)
T ss_pred CEEEEEEeCCCHH----------HHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-----CHHHHHHHcCCcccCC
Confidence 9999999876311 111111 11111111 1122 68999986432 122222222221
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+..+.+|+++|.|++.++++|.+
T Consensus 148 ~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 148 RTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1234678999999999999999975
No 134
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.33 E-value=7.9e-12 Score=118.57 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=90.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..++|.++|.+|||||||+++++... ....+..|.+. .........+.++||||..... ..+...++++|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~~-------~~~~~~~~~a~ 86 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQ 86 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeE--EEEEECCEEEEEEECCCCHHHH-------HHHHHHhccCC
Confidence 34799999999999999999998654 32222222221 1111234568999999963221 12234468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHH--h-cch---hhccccccCcCCCCCccHHHHHHHhhhc----CC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD--L-RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----GT 243 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~-~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----~~ 243 (561)
++++|+|++..+.. .+-...+...+.+ . ..+ ++||+|+.+... ...+...++.. +.
T Consensus 87 ~iI~V~D~s~~~s~---------~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~-----~~~~~~~l~l~~~~~~~ 152 (181)
T PLN00223 87 GLIFVVDSNDRDRV---------VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-----AAEITDKLGLHSLRQRH 152 (181)
T ss_pred EEEEEEeCCcHHHH---------HHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC-----HHHHHHHhCccccCCCc
Confidence 99999998743211 1111122222211 1 111 899999975432 23333333321 12
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+||++|.|+.+++++|.+..
T Consensus 153 ~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 153 WYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred eEEEeccCCCCCCHHHHHHHHHHHH
Confidence 2345789999999999999998763
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.33 E-value=5.5e-12 Score=114.54 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=90.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccC--CeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVP--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|+|||||+|+|.+........+++|.+..... ..+ ..+.++||||....... .. ...+++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----~~---~~~~~~ 74 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI----RR---LYYRAV 74 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH----HH---HHHhhh
Confidence 58999999999999999999988866677788887765431 222 45889999995433211 11 112344
Q ss_pred CEEEEEecccccchhhhccchhhHh-hhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIW-RNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+.++.++|....-. +..... .....+...... ..+ ++||+|+.... .................+.
T Consensus 75 ~~~i~~~d~~~~v~-----~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~ 143 (161)
T TIGR00231 75 ESSLRVFDIVILVL-----DVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-----LKTHVAFLFAKLNGEPIIP 143 (161)
T ss_pred hEEEEEEEEeeeeh-----hhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-----hhHHHHHHHhhccCCceEE
Confidence 55555554331100 011111 111111111111 112 89999997433 2223344444455567999
Q ss_pred EEccCCCCHHHHHHHHH
Q psy17315 249 IVGVPNVGKSTFFNVLT 265 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~ 265 (561)
+|+..|.|++.++++|.
T Consensus 144 ~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 144 LSAETGKNIDSAFKIVE 160 (161)
T ss_pred eecCCCCCHHHHHHHhh
Confidence 99999999999999873
No 136
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.33 E-value=1e-11 Score=115.17 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=89.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||++++..... +..++.++.+.... ... ...+.++||||...... +. -..++.+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~~ 73 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----MR---DLYMKNG 73 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh----HH---HHHHhhC
Confidence 5899999999999999999986542 22333333322111 111 23467999999754332 11 2245889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+... .+..+..+...+.... .+ ++||+|+.+...... .....+.... ..+
T Consensus 74 d~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~ 139 (164)
T cd04175 74 QGFVLVYSITAQS----------TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK---EQGQNLARQW-GCA 139 (164)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH---HHHHHHHHHh-CCE
Confidence 9999999865221 1222222222222211 11 899999975433221 2222232222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+||++|.|+..++.++.+.
T Consensus 140 ~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 140 FLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999865
No 137
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.33 E-value=1.4e-11 Score=117.08 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=88.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcc--cccCccc---cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFC--TIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~--T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.++|+++|.+|||||||++++...... ...|.. +...... ......+.++||||..... ..+...++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~ 74 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR-------PLWKSYTR 74 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH-------HHHHHHhc
Confidence 478999999999999999999876521 123322 2111110 1123468999999974222 12233468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHH----Hhcch---hhccccccCcCCCCCccHHHHHHHhh---h
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIR----DLRRS---VDAKADSKKKMGPKKTDEGEKKMLLG---R 240 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~---~ 240 (561)
++|++++|+|++..+ .+..+......+. ....+ ++||+|+.+.. ....+..... .
T Consensus 75 ~~d~ii~v~D~~~~~----------~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~-----~~~~~~~~~~~~~~ 139 (183)
T cd04152 75 CTDGIVFVVDSVDVE----------RMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL-----SVSEVEKLLALHEL 139 (183)
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC-----CHHHHHHHhCcccc
Confidence 899999999976322 1111111111111 11122 89999986321 1222332222 1
Q ss_pred c--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 V--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
. .....+.+|+.+|.|+..++++|.+..
T Consensus 140 ~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 140 SASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred CCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 1 123467899999999999999998763
No 138
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.32 E-value=1.1e-11 Score=119.47 Aligned_cols=152 Identities=15% Similarity=0.134 Sum_probs=92.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||++++.+........|..+.+.... .. ....+.+|||||...... .....++.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~ 78 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT-------ITSTYYRG 78 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH-------HHHHHhCC
Confidence 47899999999999999999998763222222222111110 11 113588999999643221 22345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+|++++|+|++..+ .+..+..+.+.+...... |+||+|+.+..... ......+.... ....
T Consensus 79 a~~iilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~---~~~~~~~~~~~-~~~~ 144 (199)
T cd04110 79 THGVIVVYDVTNGE----------SFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE---TEDAYKFAGQM-GISL 144 (199)
T ss_pred CcEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC---HHHHHHHHHHc-CCEE
Confidence 99999999876322 222232222233222111 89999997544332 22222222222 2467
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+.+|.|+..+++++....
T Consensus 145 ~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 145 FETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 8999999999999999998874
No 139
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.32 E-value=1.1e-11 Score=114.60 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=92.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|+|++.... ..+.+|.+...... ......+.+|||||...... .....++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 74 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS-------LAPMYYRGA 74 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH-------HHHHHhccC
Confidence 58999999999999999999987732 33444432221111 11223578999999642221 112346789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|++..+ .+.....+.+.+.... .. ++||+|+...... .......+..... ...
T Consensus 75 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-~~~ 140 (163)
T cd01860 75 AAAIVVYDITSEE----------SFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQV---STEEAQEYADENG-LLF 140 (163)
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcC---CHHHHHHHHHHcC-CEE
Confidence 9999999876322 1222222223333322 11 7899998753322 2223333333333 468
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|++.+++++.+.
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 141 FETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999876
No 140
>PLN03118 Rab family protein; Provisional
Probab=99.32 E-value=9.2e-12 Score=121.01 Aligned_cols=156 Identities=17% Similarity=0.109 Sum_probs=95.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+++|++.. ....+..|.+........ ....+.|+||||...... + ....++.
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----~---~~~~~~~ 85 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT----L---TSSYYRN 85 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHhc
Confidence 34799999999999999999999776 333333443322211111 123688999999754321 1 1234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHHhc----c---hhhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRDLR----R---SVDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~----~---~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
+|++++|+|.+.++ .+..+.. +...+.... . -|+||+|+....... ......+.... .
T Consensus 86 ~d~~vlv~D~~~~~----------sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~---~~~~~~~~~~~-~ 151 (211)
T PLN03118 86 AQGIILVYDVTRRE----------TFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS---REEGMALAKEH-G 151 (211)
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC---HHHHHHHHHHc-C
Confidence 99999999876322 2223321 222222111 1 189999997543332 12222222221 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
...+.+|+++|.|++.++++|....+..
T Consensus 152 ~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 152 CLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 3568999999999999999999886443
No 141
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.32 E-value=3.8e-12 Score=115.69 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=98.8
Q ss_pred EEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccccc---CCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 101 IVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 101 ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
++|.+|+|||||+|+|++.. ...+..+++|......... ...+.++||||+.............+...++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 57999999999999999887 4477788888776553222 4579999999997655432222233445568899999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccC
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVP 253 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~ 253 (561)
+|+|+...... .... +.........+ +.||+|.......... ..............+.+.+|+.+
T Consensus 81 ~v~~~~~~~~~--------~~~~---~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~ 148 (163)
T cd00880 81 FVVDADLRADE--------EEEK---LLELLRERGKPVLLVLNKIDLLPEEEEEEL-LELRLLILLLLLGLPVIAVSALT 148 (163)
T ss_pred EEEeCCCCCCH--------HHHH---HHHHHHhcCCeEEEEEEccccCChhhHHHH-HHHHHhhcccccCCceEEEeeec
Confidence 99987632211 0000 12222222333 8999999743211100 00011222334566789999999
Q ss_pred CCCHHHHHHHHHhh
Q psy17315 254 NVGKSTFFNVLTKR 267 (561)
Q Consensus 254 ~~Gks~l~~~l~~~ 267 (561)
|.|+..+++++.+.
T Consensus 149 ~~~v~~l~~~l~~~ 162 (163)
T cd00880 149 GEGIDELREALIEA 162 (163)
T ss_pred cCCHHHHHHHHHhh
Confidence 99999999998753
No 142
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.31 E-value=1.7e-11 Score=114.29 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=89.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc---cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.||+++|.+|||||||+|+|.+.... ..+|.++...... ......+.+|||||..... ..+...++.+|
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad 72 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANLAAEIRKAN 72 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcccceEeeeeecCCeEEEEEEeCCCchhhh-------HHHhhhcccCC
Confidence 37999999999999999999986632 1233221111110 1123468899999975322 12233468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcCC-CcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT-NLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~-~~~ 246 (561)
++++|+|.+..+ .+..+. .+...+... ..+ |+||+|+.+...... ....+..+...... ...
T Consensus 73 ~~ilv~d~~~~~----------s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~ 141 (166)
T cd01893 73 VICLVYSVDRPS----------TLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAG-LEEEMLPIMNEFREIETC 141 (166)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhH-HHHHHHHHHHHHhcccEE
Confidence 999999865321 122211 122222222 122 899999975443210 11222222222222 367
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|...+++.+...
T Consensus 142 ~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 142 VECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred EEeccccccCHHHHHHHHHHH
Confidence 899999999999999998765
No 143
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.31 E-value=6.2e-12 Score=114.89 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=86.3
Q ss_pred EEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEE
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~V 178 (561)
|+++|.+|||||||+|+|++........|..+.+..........+.++||||..... ......++.+|++++|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii~v 74 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFR-------SMWERYCRGVNAIVYV 74 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHH-------HHHHHHHhcCCEEEEE
Confidence 799999999999999999987643333343332221111223468999999974322 1123346789999999
Q ss_pred ecccccchhhhccchhhHhhhH-HHHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHh-hh--cCCCcEEE
Q psy17315 179 CKEKLRNIFFISLNTITIWRNL-KLLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLL-GR--VGTNLKVG 248 (561)
Q Consensus 179 vD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~-~~--~~~~~~i~ 248 (561)
+|++..+ .+... ..+...+.. ...+ ++||+|+.+.... ......+. .. ......+.
T Consensus 75 ~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 140 (159)
T cd04159 75 VDAADRT----------ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV----DELIEQMNLKSITDREVSCYS 140 (159)
T ss_pred EECCCHH----------HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH----HHHHHHhCcccccCCceEEEE
Confidence 9876321 11111 111111111 1112 7899998743211 11122221 11 12245699
Q ss_pred EEccCCCCHHHHHHHHHh
Q psy17315 249 IVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~ 266 (561)
+|+++|.|+..++++|.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 141 ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeccCCChHHHHHHHhh
Confidence 999999999999999864
No 144
>KOG1490|consensus
Probab=99.31 E-value=2.1e-12 Score=133.87 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=115.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccc----ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQ----GLGNAFLSH 168 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~----~~~~~~l~~ 168 (561)
...+..++|+|||||||++|.++..+..+.+|||||+....|. +.+..++++||||+...--+.. ...-..+++
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999887763 3456899999999984332211 111234788
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
++. ++|+++|.+ ......+..+++++...-.-.... |.||||......+.....+.++.+.+. +..
T Consensus 247 Lra--aVLYfmDLS-------e~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~-~~v 316 (620)
T KOG1490|consen 247 LRS--AVLYFMDLS-------EMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD-GNV 316 (620)
T ss_pred hhh--hheeeeech-------hhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc-cCc
Confidence 884 489999865 223344555666554432222222 899999998777766555556655443 335
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+-.|+.+-.|+-++.+.-++++
T Consensus 317 ~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 317 KVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred eEEEecccchhceeeHHHHHHHHH
Confidence 678899999999988776666543
No 145
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.31 E-value=1.2e-11 Score=116.50 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=91.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--c------------ccCCeEEEEeCCCcccCCccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--N------------KVPAFLNVVDIAGLVKGAAEGQGLG 162 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~------------~~~~~i~l~DtpG~~~~~~~~~~~~ 162 (561)
+||+++|.+|||||||+|++.+........|..+.+.... . .....+.+|||||......
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------ 78 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRS------ 78 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHH------
Confidence 6899999999999999999987653222122111111100 0 1123588999999643221
Q ss_pred cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHH
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKK 235 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~ 235 (561)
.....++++|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+.+...... ....
T Consensus 79 -~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~---~~~~ 144 (180)
T cd04127 79 -LTTAFFRDAMGFLLIFDLTNEQ----------SFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE---EQAK 144 (180)
T ss_pred -HHHHHhCCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH---HHHH
Confidence 1233468899999999876322 2222322222232211 11 899999975433322 2233
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+..... .+.+.+|+++|.|+.+++++|.+..
T Consensus 145 ~~~~~~~-~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 145 ALADKYG-IPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3332222 3679999999999999999998753
No 146
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.31 E-value=6.1e-12 Score=119.02 Aligned_cols=152 Identities=17% Similarity=0.102 Sum_probs=91.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccC----------------CCcccccCccc--cccCCeEEEEeCCCcccCCcccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAEN----------------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQ 159 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~----------------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~ 159 (561)
+|+++|.+|+|||||+|+|++....... ..++|.+.... ......+.++||||.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 4899999999999999999987622211 23344433221 1123468999999975322
Q ss_pred ccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHH
Q psy17315 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 160 ~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
..+...++.+|++++|+|+.... .. ..... ...+.....+ ++||+|+........ ....+..
T Consensus 77 ---~~~~~~~~~~d~~i~v~d~~~~~-------~~---~~~~~-~~~~~~~~~~i~iv~nK~D~~~~~~~~~-~~~~~~~ 141 (189)
T cd00881 77 ---SEVIRGLSVSDGAILVVDANEGV-------QP---QTREH-LRIAREGGLPIIVAINKIDRVGEEDLEE-VLREIKE 141 (189)
T ss_pred ---HHHHHHHHhcCEEEEEEECCCCC-------cH---HHHHH-HHHHHHCCCCeEEEEECCCCcchhcHHH-HHHHHHH
Confidence 22344567899999999875311 00 00111 1112222222 899999985221110 1111222
Q ss_pred Hhhhc-------------CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 237 LLGRV-------------GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~-------------~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..... ...+.+.+|++.|.|.+.+++++....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 142 LLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 22221 246678999999999999999998874
No 147
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.30 E-value=2.2e-11 Score=113.64 Aligned_cols=151 Identities=16% Similarity=0.097 Sum_probs=92.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.||||||||++++.+........|..+.+.... . .....+.+|||||...... + ....++.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~ 77 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS----L---RTPFYRG 77 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH----h---HHHHhcC
Confidence 47899999999999999999997663332223222221110 1 1123578999999643221 1 2234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
+|++++|+|.+..+ .+..+..+...+.... .+ ++||+|+.++.. ...+...+....
T Consensus 78 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~ 143 (170)
T cd04116 78 SDCCLLTFAVDDSQ----------SFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQV----STEEAQAWCREN 143 (170)
T ss_pred CCEEEEEEECCCHH----------HHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccccc----CHHHHHHHHHHC
Confidence 99999999765322 2233333322222211 11 899999873211 223344444444
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+.+++.++.+.
T Consensus 144 ~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 144 GDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 44567999999999999999999864
No 148
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.30 E-value=1.3e-11 Score=117.79 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=90.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc-C--CeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV-P--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~-~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+|+++|.+|||||||+|+|++.... ..++.++.+.... ... + ..+.+|||||...... + ....++.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA----L---RDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHHhCC
Confidence 4899999999999999999866532 2233333221110 111 1 2488999999643221 1 123468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc------ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
++++|+|.+..+ .++.+..+...+.... .+ |+||+|+.+...... .....+..... .
T Consensus 73 ~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~---~~~~~~~~~~~-~ 138 (190)
T cd04144 73 GFILVYSITSRS----------TFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST---EEGAALARRLG-C 138 (190)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH---HHHHHHHHHhC-C
Confidence 999999875322 2333333333333221 12 899999975433221 12222222222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.+|+++|.|+..+++++.+...
T Consensus 139 ~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 139 EFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999998653
No 149
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.30 E-value=2.2e-11 Score=115.57 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=88.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
....+|+++|.+|||||||++++.... ....+..|.... ........+.++||||..... ......++.+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~a 85 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYKNLKFTMWDVGGQDKLR-------PLWRHYYQNT 85 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEECCEEEEEEECCCCHhHH-------HHHHHHhcCC
Confidence 345799999999999999999997544 222222222111 111234568999999974322 1223446899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHH--hc-ch---hhccccccCcCCCCCccHHHHHHHhhhc----
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRD--LR-RS---VDAKADSKKKMGPKKTDEGEKKMLLGRV---- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~--~~-~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~---- 241 (561)
|++++|+|++..+. ++.. ..+.+.+.. .. .+ ++||+|+.+... ..++....+..
T Consensus 86 d~iI~v~D~t~~~s----------~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~i~~~l~~~~~~~ 150 (182)
T PTZ00133 86 NGLIFVVDSNDRER----------IGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS-----TTEVTEKLGLHSVRQ 150 (182)
T ss_pred CEEEEEEeCCCHHH----------HHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC-----HHHHHHHhCCCcccC
Confidence 99999999863221 1111 112222211 11 12 899999864321 12222222211
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+.+++++|.+.
T Consensus 151 ~~~~~~~~Sa~tg~gv~e~~~~l~~~ 176 (182)
T PTZ00133 151 RNWYIQGCCATTAQGLYEGLDWLSAN 176 (182)
T ss_pred CcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence 11234578999999999999999875
No 150
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.30 E-value=4.5e-12 Score=118.47 Aligned_cols=150 Identities=11% Similarity=0.037 Sum_probs=87.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
+|+++|.+|||||||+|+|++.. ....+..|.+.... ...+..+.++||||..... ..+..++++||+++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~--~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~a~~ii 71 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKL--RLDKYEVCIFDLGGGANFR-------GIWVNYYAEAHGLV 71 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEE--EECCEEEEEEECCCcHHHH-------HHHHHHHcCCCEEE
Confidence 47999999999999999999764 23334444432211 1234568999999964322 22345678999999
Q ss_pred EEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCcc-HHHHHHHhhhcC-CCcEE
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTD-EGEKKMLLGRVG-TNLKV 247 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~-~~~l~~l~~~~~-~~~~i 247 (561)
+|+|++..+ .+.... .+...+.. ...+ ++||+|+.+........ ...+..+..... ....+
T Consensus 72 ~V~D~s~~~----------s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~ 141 (167)
T cd04161 72 FVVDSSDDD----------RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIE 141 (167)
T ss_pred EEEECCchh----------HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEE
Confidence 999986321 111111 11211111 1112 89999997543211000 000111111111 23567
Q ss_pred EEEccCC------CCHHHHHHHHHh
Q psy17315 248 GIVGVPN------VGKSTFFNVLTK 266 (561)
Q Consensus 248 ~isg~~~------~Gks~l~~~l~~ 266 (561)
.+|+.+| .|+...++||..
T Consensus 142 ~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 142 PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeEceeCCCCccccCHHHHHHHHhc
Confidence 7999998 899999999964
No 151
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.30 E-value=2.5e-11 Score=112.37 Aligned_cols=149 Identities=16% Similarity=0.175 Sum_probs=89.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||++++........ ++.++.+.... ... ...+.++||||...... + ....++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~a 73 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS----M---RDLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCchhheEEEEEEECCEEEEEEEEECCCcccccc----h---HHHHHhhC
Confidence 5899999999999999999987653211 12222111110 111 23578999999753332 1 22346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+.+..... ......+.... ..+
T Consensus 74 d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~ 139 (163)
T cd04176 74 QGFIVVYSLVNQQ----------TFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVS---SAEGRALAEEW-GCP 139 (163)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccC---HHHHHHHHHHh-CCE
Confidence 9999999876322 2233333333333321 12 89999986533221 11222222222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..++.++.+.
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 140 FMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHh
Confidence 7899999999999999999864
No 152
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.30 E-value=1.6e-11 Score=116.88 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=90.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
....+|+++|.+|||||||+|+|++... ...+ |..+..+ ...+..+.++||||..... ..+...++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~~~~-------~~~~~~~~ 85 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGHEQAR-------RLWKDYFP 85 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhc
Confidence 4467899999999999999999997652 2211 2222222 1224468899999964321 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhhc---
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV--- 241 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~--- 241 (561)
.+|++++|+|++..+. ..+....+.+.+.. ...+ ++||+|+.+. .....+.......
T Consensus 86 ~ad~iilV~D~~~~~s---------~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-----~~~~~~~~~~~~~~~~ 151 (190)
T cd00879 86 EVDGIVFLVDAADPER---------FQESKEELDSLLSDEELANVPFLILGNKIDLPGA-----VSEEELRQALGLYGTT 151 (190)
T ss_pred cCCEEEEEEECCcHHH---------HHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-----cCHHHHHHHhCccccc
Confidence 8999999998763211 11111122222211 1122 8999998641 1223344433321
Q ss_pred ------------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 ------------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ------------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+.+++++|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 12346999999999999999999763
No 153
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.29 E-value=9.3e-13 Score=105.49 Aligned_cols=61 Identities=33% Similarity=0.474 Sum_probs=52.3
Q ss_pred cccCCCce--eccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEE
Q psy17315 471 FTAGQDEV--KAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 548 (561)
Q Consensus 471 ~t~~~~ev--~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~ 548 (561)
||.+.+.+ ++|++|+|+|+.|+|+.||+|+.++|++|.++ | ..|++|++|+|+|||||+|.
T Consensus 13 ~~~~~~~~~~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~--------------k---~~~~vg~~~~L~dgDvV~Ii 75 (76)
T cd01669 13 LTDKEGNVLPDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDA--------------R---TGRRVGEDYELKHRDVIKIV 75 (76)
T ss_pred ccCCCCCCccceEEECCCCCHHHHHHHHHHHHHhcceeeEEe--------------e---CCEEeCCCcEecCCCEEEEe
Confidence 45544555 99999999999999999999999999999642 2 26999999999999999984
No 154
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.29 E-value=2.5e-11 Score=117.17 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=93.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|.++|.+|||||||++++........-.|..+.+.... ... ...+.+|||||...... ..-..+++|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~-------l~~~y~~~a 73 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-------ITSAYYRSA 73 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH-------HHHHHhcCC
Confidence 3689999999999999999987653221112222221111 111 24688999999754331 123456899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.++ .++.+..+.+.+...... |+||+|+.+..... ......+.........
T Consensus 74 d~iIlVfDvtd~~----------Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~---~~~~~~~a~~~~~~~~ 140 (202)
T cd04120 74 KGIILVYDITKKE----------TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIS---RQQGEKFAQQITGMRF 140 (202)
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC---HHHHHHHHHhcCCCEE
Confidence 9999999987433 233333333333332211 89999997533322 1222222222223457
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+||++|.|+..+|.++.+..
T Consensus 141 ~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 141 CEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998864
No 155
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.29 E-value=1.6e-11 Score=115.48 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=88.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCc---------------ccCCCcccccCcccc-------ccCCeEEEEeCCCcccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAA---------------AENFPFCTIDPNENN-------KVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~---------------~~~~~~~T~~~~~~~-------~~~~~i~l~DtpG~~~~~ 155 (561)
+|+++|.+|||||||+|+|++.... .....|+|....... .....+.+|||||.....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 5899999999999999999874310 011234444332211 113357899999986432
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEG 232 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~ 232 (561)
. .....++.+|++++|+|++... .....+.+ . .+.....+ ++||+|+.+... .....
T Consensus 82 ~-------~~~~~~~~ad~~i~v~D~~~~~-------~~~~~~~~---~-~~~~~~~~iiiv~NK~Dl~~~~~--~~~~~ 141 (179)
T cd01890 82 Y-------EVSRSLAACEGALLLVDATQGV-------EAQTLANF---Y-LALENNLEIIPVINKIDLPSADP--ERVKQ 141 (179)
T ss_pred H-------HHHHHHHhcCeEEEEEECCCCc-------cHhhHHHH---H-HHHHcCCCEEEEEECCCCCcCCH--HHHHH
Confidence 1 2234568899999999876321 01111111 1 11112222 999999864210 00111
Q ss_pred HHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 233 EKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 233 ~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+...... .....+.+|+++|.|++.|++++.+..
T Consensus 142 ~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 142 QIEDVLGL-DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHhCC-CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 22222221 223579999999999999999998763
No 156
>PTZ00369 Ras-like protein; Provisional
Probab=99.29 E-value=2.5e-11 Score=115.85 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=91.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCc-cccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPN-ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~-~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.+|||||||++++.+.... ..+..+.+.... ........+.+|||||...... + ....++.+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----l---~~~~~~~~ 77 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA----M---RDQYMRTG 77 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh----h---HHHHhhcC
Confidence 478999999999999999999976521 112112111100 0001122477899999754332 1 22346789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .++.+..+...+..... + ++||+|+.+..... ........... ..+
T Consensus 78 d~iilv~D~s~~~----------s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~---~~~~~~~~~~~-~~~ 143 (189)
T PTZ00369 78 QGFLCVYSITSRS----------SFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVS---TGEGQELAKSF-GIP 143 (189)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC---HHHHHHHHHHh-CCE
Confidence 9999999876322 23333333333333221 1 89999986432222 11222222222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++.+..
T Consensus 144 ~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 144 FLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
No 157
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.29 E-value=3.1e-11 Score=112.67 Aligned_cols=151 Identities=18% Similarity=0.122 Sum_probs=90.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.||+++|.+|||||||+|++..... ...+..+........ ......+.++||||..... .+.. ..++.+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~~---~~~~~~ 73 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG----GLRD---GYYIGG 73 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc----cccH---HHhcCC
Confidence 3799999999999999999986542 222222222211110 1122468899999975332 1222 235789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
|++++|+|.+..+ .+..+..+...+.... .+ ++||+|+.+.... ... ..+. .......+
T Consensus 74 d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~----~~~-~~~~-~~~~~~~~ 137 (166)
T cd00877 74 QCAIIMFDVTSRV----------TYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK----AKQ-ITFH-RKKNLQYY 137 (166)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCC----HHH-HHHH-HHcCCEEE
Confidence 9999999876322 2222222222232222 22 8999999733211 111 1121 12345689
Q ss_pred EEEccCCCCHHHHHHHHHhhccC
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
.+|+++|.|+..++++|.+....
T Consensus 138 e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 138 EISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred EEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999987644
No 158
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.29 E-value=2e-11 Score=118.75 Aligned_cols=152 Identities=17% Similarity=0.148 Sum_probs=93.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c----ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.+|||||||+|+|++........|..+.+.... . .....+.++||||...... .....+++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 75 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS-------ITRSYYRN 75 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH-------HHHHHhcC
Confidence 6899999999999999999998763222223333222111 0 1123688999999643221 12345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-c---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-R---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .++.+..+...+.... . . ++||+|+.+..... ......+....+ .
T Consensus 76 ~d~iilv~D~~~~~----------Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~-~ 141 (211)
T cd04111 76 SVGVLLVFDITNRE----------SFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT---REEAEKLAKDLG-M 141 (211)
T ss_pred CcEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC---HHHHHHHHHHhC-C
Confidence 99999999876322 2233333223222221 1 1 78999997543322 222233333333 5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.+|+++|.|+..++++|.+..+
T Consensus 142 ~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 142 KYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999998653
No 159
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.29 E-value=4.1e-11 Score=114.46 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=91.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccC---CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+||+++|.||||||||+|++++.....+++..++...... ...+ ..+.+|||||...... +. -..++.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~---~~~~~~ 73 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA----MS---RIYYRG 73 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh----hh---HhhcCC
Confidence 4799999999999999999998764333333222111100 1111 2467999999743221 11 123578
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCC-CCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMG-PKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~-~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.. ..++.+..+.+.+.... .+ |+||+|+.+... ...........+.... ...
T Consensus 74 ~d~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-~~~ 142 (193)
T cd04118 74 AKAAIVCYDLTDS----------SSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI-KAQ 142 (193)
T ss_pred CCEEEEEEECCCH----------HHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc-CCe
Confidence 9999999987532 12222222223333221 12 999999864321 1111112233332222 245
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+|+++|.|++.|++++.+...
T Consensus 143 ~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998653
No 160
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.28 E-value=2.6e-11 Score=114.01 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=91.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
++|+++|.+|||||||++++.+........|........... ....+.++||||...... + ....++.+|
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----l---~~~~~~~~d 75 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA----M---RDQYMRCGE 75 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH----H---hHHHhhcCC
Confidence 689999999999999999998765321111111101100011 123588999999754331 2 223467899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+.++ .++.+..+...+.... .+ |+||+|+.+...... .....+.... ..+.
T Consensus 76 ~~ilv~d~~~~~----------Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~---~~~~~~a~~~-~~~~ 141 (172)
T cd04141 76 GFIICYSVTDRH----------SFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT---EEGRNLAREF-NCPF 141 (172)
T ss_pred EEEEEEECCchh----------HHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH---HHHHHHHHHh-CCEE
Confidence 999999876322 2233332333333321 12 899999875433321 1222222222 3467
Q ss_pred EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+|+++|.|+..+++++.+...
T Consensus 142 ~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 142 FETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred EEEecCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999997643
No 161
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.28 E-value=2.7e-11 Score=112.37 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=90.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||++++.+........|..+.+.... .. ....+.++||||...... .....++.+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~~~~ 73 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-------ITKQYYRRA 73 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-------hHHHHhcCC
Confidence 3799999999999999999997763322223222221111 11 123578999999643221 122346889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
|++++|+|.+.++ .++.+..+.+.+..... . |+||+|+.+...........+.. ... -..
T Consensus 74 ~~~i~v~d~~~~~----------sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~---~~~-~~~ 139 (161)
T cd04117 74 QGIFLVYDISSER----------SYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAK---EYG-MDF 139 (161)
T ss_pred cEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH---HcC-CEE
Confidence 9999999876322 23333333333333221 1 89999987544333222222222 222 346
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..++.+|.+.
T Consensus 140 ~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 140 FETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHhh
Confidence 999999999999999999764
No 162
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.28 E-value=2.6e-11 Score=115.42 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=92.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
++|+++|.+|||||||+|++.+.... ..+..|.+..... ... ...+.++||||...... .....+++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~~~ 72 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKT-VYIENKIIKLQIWDTNGQERFRS-------LNNSYYRG 72 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEE-EEECCEEEEEEEEECCCcHHHHh-------hHHHHccC
Confidence 47999999999999999999987633 2223332221111 111 23578999999643221 12334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.. ..+..+..+...+..... + ++||+|+.+....... ....+.... ...
T Consensus 73 ~d~iilv~d~~~~----------~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~---~~~~~~~~~-~~~ 138 (188)
T cd04125 73 AHGYLLVYDVTDQ----------ESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSN---IAKSFCDSL-NIP 138 (188)
T ss_pred CCEEEEEEECcCH----------HHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHH---HHHHHHHHc-CCe
Confidence 9999999987532 223333333333333221 1 8999999854433221 112222221 226
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+|+++|.|+..++.++.+..+
T Consensus 139 ~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 139 FFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999988753
No 163
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.27 E-value=3.8e-11 Score=111.35 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=88.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCccc--CCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAE--NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~--~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||++++.+...... +..+.+...... ......+.+|||||...... .....++.+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 73 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT-------MHASYYHKA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHHHhCCC
Confidence 4799999999999999999987653221 111222111000 11123588999999753321 123446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
|++++|+|.+... .+..+..+...+.... .+ ++||+|+.+. .......+... ...+.+
T Consensus 74 d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~~~~-~~~~~~ 136 (161)
T cd04124 74 HACILVFDVTRKI----------TYKNLSKWYEELREYRPEIPCIVVANKIDLDPS------VTQKKFNFAEK-HNLPLY 136 (161)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCcEEEEEECccCchh------HHHHHHHHHHH-cCCeEE
Confidence 9999999875321 2223333333333221 12 9999998521 11111111111 234678
Q ss_pred EEEccCCCCHHHHHHHHHhhc
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+|+++|.|+..+++.+.+..
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 137 YVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998753
No 164
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.27 E-value=4.6e-11 Score=113.44 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=92.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcc-ccc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-NNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~-~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+||+++|.+|||||||++++.+........|....+... ... ....+.+|||+|...... + ....++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~----~---~~~~~~~a 73 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN----M---LPLVCNDA 73 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH----h---hHHHCcCC
Confidence 479999999999999999998765321112211111110 011 123689999999753321 1 12356899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-----hhhccccccCcCCCCC--ccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-----SVDAKADSKKKMGPKK--TDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~v~NK~D~~~~~~~~~--~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.++ .+..+..+..++..... -|+||+|+........ ........+..... ..
T Consensus 74 ~~iilv~D~t~~~----------s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~ 142 (182)
T cd04128 74 VAILFMFDLTRKS----------TLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-AP 142 (182)
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcC-CE
Confidence 9999999876432 22233222223322211 1899999964321111 01122222322222 46
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
.+.+|+++|.|++.+++++.+..+.
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999987654
No 165
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.27 E-value=2.4e-11 Score=112.56 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=88.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCccc-ccC--ccc-c--ccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCT-IDP--NEN-N--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T-~~~--~~~-~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
++|+++|.+|||||||+++|.... .....+..++ .+. ... . .....+.+|||||..... .+. ...+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~---~~~~ 73 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS----DMV---SNYW 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH----HHH---HHHh
Confidence 479999999999999999998542 1222222111 111 000 0 112468999999964322 111 2345
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+++|++++|+|.+..+ .++.+..+.+.+.... .+ |+||+|+.+...... .....+... ...
T Consensus 74 ~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~-~~~ 139 (164)
T cd04101 74 ESPSVFILVYDVSNKA----------SFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTD---AQAQAFAQA-NQL 139 (164)
T ss_pred CCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCH---HHHHHHHHH-cCC
Confidence 8899999999876321 2233333333333322 22 899999975433221 111222111 123
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|+.+|.|+..+++.+.+.
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 140 KFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred eEEEEeCCCCCChHHHHHHHHHH
Confidence 57899999999999999998765
No 166
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.27 E-value=8.7e-12 Score=115.08 Aligned_cols=157 Identities=20% Similarity=0.121 Sum_probs=95.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCcc------cccccccccccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAE------GQGLGNAFLSHI 169 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~------~~~~~~~~l~~i 169 (561)
.|+++|.+|+|||||+|+|++.. ...++.+++|..... ......+.++||||+...... -..+...++...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF-FNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE-EEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 38999999999999999999433 667888888876543 333448999999998543210 011112233333
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhh-hcCCCc
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLG-RVGTNL 245 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~-~~~~~~ 245 (561)
.+++++++|+|..... . .....+...+.....+ +.||+|........ .....+..... ......
T Consensus 80 ~~~~~~~~v~d~~~~~--------~---~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~ 147 (170)
T cd01876 80 ENLKGVVLLIDSRHGP--------T---EIDLEMLDWLEELGIPFLVVLTKADKLKKSELA-KALKEIKKELKLFEIDPP 147 (170)
T ss_pred hhhhEEEEEEEcCcCC--------C---HhHHHHHHHHHHcCCCEEEEEEchhcCChHHHH-HHHHHHHHHHHhccCCCc
Confidence 5678899999764210 0 0001122334433333 89999996321110 01111222222 234557
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|++++.|...++++|.+.
T Consensus 148 ~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 148 IILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred eEEEecCCCCCHHHHHHHHHHh
Confidence 7899999999999999998753
No 167
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.27 E-value=4.5e-11 Score=110.31 Aligned_cols=150 Identities=18% Similarity=0.112 Sum_probs=89.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-c---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-K---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|+|+..... ..+.+++.+..... . ....+.++||||...... + .-..++.+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~~ 72 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA----I---RDNYHRSG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH----H---HHHHhhcC
Confidence 37999999999999999999976522 23333333221111 1 123588999999753321 1 12345788
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|.+++|+|.... ..+..+..+...+... ..+ |+||+|+...... .......+.... ..+
T Consensus 73 ~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~---~~~~~~~~~~~~-~~~ 138 (164)
T cd04139 73 EGFLLVFSITDM----------ESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV---SSEEAANLARQW-GVP 138 (164)
T ss_pred CEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccccc---CHHHHHHHHHHh-CCe
Confidence 999999976421 1222233222222222 122 9999999752111 122222222222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|++.+++.+.+..
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 139 YVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998763
No 168
>KOG0092|consensus
Probab=99.27 E-value=3.7e-11 Score=110.85 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=104.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-----CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-----AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-----~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...|+.++|..|||||||+-+....+ .++-...|.|+..... .....+.+|||+|.....+ +.. -++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQERy~s----lap---MYy 75 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQERYHS----LAP---MYY 75 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCcccccc----ccc---cee
Confidence 34789999999999999999998655 2233445555543221 1123688999999976442 222 346
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---------hhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---------VDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---------v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
|+|+++|+|.|.+..+ .+..+.+++.++.+. ++||+|+.........+...+.+-
T Consensus 76 RgA~AAivvYDit~~~-------------SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~--- 139 (200)
T KOG0092|consen 76 RGANAAIVVYDITDEE-------------SFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAES--- 139 (200)
T ss_pred cCCcEEEEEEecccHH-------------HHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHh---
Confidence 9999999999886422 333344444444433 899999997555543333333222
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDD 273 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~ 273 (561)
.....+..|+++|.|+..++..|.++.+....
T Consensus 140 -~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 140 -QGLLFFETSAKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred -cCCEEEEEecccccCHHHHHHHHHHhccCccc
Confidence 34477999999999999999999999765543
No 169
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.26 E-value=2.5e-11 Score=115.91 Aligned_cols=154 Identities=16% Similarity=0.080 Sum_probs=96.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.++||||||++++..........|..+.+.... .. ....+.+|||||...... .+...++.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-------l~~~~~~~ 78 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT-------IFRSYSRG 78 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHhcC
Confidence 47999999999999999999997552211111122221111 11 124688999999853331 12344689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+|++++|+|.+.+ ..++++..+.+++...... |+||+|+.+..... ..+...+.... ....
T Consensus 79 ad~illVfD~t~~----------~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~---~~~~~~~a~~~-~~~~ 144 (189)
T cd04121 79 AQGIILVYDITNR----------WSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA---TEQAQAYAERN-GMTF 144 (189)
T ss_pred CCEEEEEEECcCH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC---HHHHHHHHHHc-CCEE
Confidence 9999999987632 2344444444444332222 89999997543332 22233333322 3468
Q ss_pred EEEEccCCCCHHHHHHHHHhhccC
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
+.+|+++|.|+..+|.++.+....
T Consensus 145 ~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 145 FEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999986543
No 170
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.26 E-value=5.9e-11 Score=112.75 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=91.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc----cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|++.+........|....+...... ....+.++||||...... + ....++.+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~a 73 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR----L---RPLSYPDV 73 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH----H---HHHhCCCC
Confidence 479999999999999999999876332222222111111111 123588999999643221 1 11245889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhc--ch---hhccccccCcCCCC-CccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLR--RS---VDAKADSKKKMGPK-KTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~---v~NK~D~~~~~~~~-~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+. .+...+.... .+ |+||+|+.+..... .........+........
T Consensus 74 d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (187)
T cd04132 74 DVLLICYAVDNPT----------SLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFA 143 (187)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcE
Confidence 9999999876322 122221 1111222111 12 89999987543211 112233344433344446
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++.+.+..
T Consensus 144 ~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 144 YLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998874
No 171
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.26 E-value=2.3e-11 Score=111.70 Aligned_cols=148 Identities=21% Similarity=0.213 Sum_probs=92.3
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-cc---CCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+|+++|.+|||||||+|+|++.. ....++.++.+..... .. ...+.++|+||...... .....++.+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA-------MRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHHhcCC
Confidence 58999999999999999999776 3333444444332221 11 23588999999754221 1123457889
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+.. ..+..+..+...+..... + ++||+|..+..... ............ .+.
T Consensus 73 ~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~-~~~ 138 (160)
T cd00876 73 GFILVYSITDR----------ESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS---KEEGKALAKEWG-CPF 138 (160)
T ss_pred EEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec---HHHHHHHHHHcC-CcE
Confidence 99999986521 122233333333333222 2 89999998633222 222222222222 567
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|+..++++|...
T Consensus 139 ~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 139 IETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EEeccCCCCCHHHHHHHHHhh
Confidence 999999999999999999764
No 172
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.25 E-value=7.7e-13 Score=133.61 Aligned_cols=200 Identities=18% Similarity=0.201 Sum_probs=107.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.|++.|.+|+|||+|+|.|++.. .+.+++.++|| +++..+.. .+.++.||||||+.+....+...+.+....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~--~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~---- 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK--ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARS---- 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHH----
Confidence 58899999999999999999984 34556666665 33334322 235689999999854322222211100000
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
.+..+|++..|+|.. .....+..++..+.. ..+|+++|+||+|. .. ..
T Consensus 76 -----------------~l~~aDvvl~VvD~~-----------~~~~~~~~i~~~l~~-~~~p~ilV~NK~Dl--~~-~~ 123 (270)
T TIGR00436 76 -----------------AIGGVDLILFVVDSD-----------QWNGDGEFVLTKLQN-LKRPVVLTRNKLDN--KF-KD 123 (270)
T ss_pred -----------------HHhhCCEEEEEEECC-----------CCCchHHHHHHHHHh-cCCCEEEEEECeeC--CC-HH
Confidence 011223333332211 011111222332222 47899999999954 32 22
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH-------Hhccc-c---hHHHHHH-HHHcccCceecc
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD-------EQKAT-S---VLDKIIT-QGYKSLQLQYFF 471 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~-------~~~~~-~---~l~~li~-~~~~~l~li~~~ 471 (561)
...+.+.++.... +..+++++||++|.|+++|.+...+.+.+ ++... + ....+++ .+|..++=-..|
T Consensus 124 ~~~~~~~~~~~~~-~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~ 202 (270)
T TIGR00436 124 KLLPLIDKYAILE-DFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPH 202 (270)
T ss_pred HHHHHHHHHHhhc-CCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCc
Confidence 2333444443322 24579999999999999987665443211 11111 1 1223333 355554444445
Q ss_pred ccCCCceeccccCC
Q psy17315 472 TAGQDEVKAWTIQK 485 (561)
Q Consensus 472 t~~~~ev~a~~~~~ 485 (561)
... -++..|....
T Consensus 203 ~~~-~~~~~~~~~~ 215 (270)
T TIGR00436 203 SVR-VEIERKSFNE 215 (270)
T ss_pred eEE-EEEEEEEECC
Confidence 554 5668887754
No 173
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.25 E-value=5.3e-11 Score=111.64 Aligned_cols=153 Identities=17% Similarity=0.083 Sum_probs=91.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
||+++|.+|||||||++++.+......-.|....+.... . .....+.+|||||...... .....++.+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ad 74 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC-------IASTYYRGAQ 74 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh-------hHHHHhcCCC
Confidence 689999999999999999998753222122222221111 1 1123689999999854321 1234468999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHH-Hhcc------hhhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIR-DLRR------SVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~------~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|++.. ..+..+..+...+. .... -|+||+|+.+...... .......+..... ...
T Consensus 75 ~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~-~~~~~~~~~~~~~-~~~ 142 (170)
T cd04108 75 AIIIVFDLTDV----------ASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYAL-MEQDAIKLAAEMQ-AEY 142 (170)
T ss_pred EEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccc-cHHHHHHHHHHcC-CeE
Confidence 99999987532 22233333332222 2111 1899999865432211 1122222222222 356
Q ss_pred EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.+|+.+|.|+..+++.+.+..+
T Consensus 143 ~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 143 WSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999988753
No 174
>PRK12289 GTPase RsgA; Reviewed
Probab=99.25 E-value=1e-11 Score=129.01 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=85.9
Q ss_pred CCceEEEeccCCCCCCCCccccCC-Ccccchhhh-hcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNP-KIPRSNQIL-ISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMG 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~-~l~~~~~~~-~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~ 77 (561)
+.+|-|.|+..| .. ++ .++++.... ..+.|.+ +||++++..+.|.++++..+..+ +++..+.+
T Consensus 91 D~vLlV~d~~~p------~~--~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~G 162 (352)
T PRK12289 91 DQILLVFALAEP------PL--DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIG 162 (352)
T ss_pred CEEEEEEECCCC------CC--CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCC
Confidence 346778888777 21 22 233311111 1244444 99999888899999888777655 56666654
Q ss_pred CCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc-------ccccCccccccCCeEEEEeCC
Q psy17315 78 PKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF-------CTIDPNENNKVPAFLNVVDIA 149 (561)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~-------~T~~~~~~~~~~~~i~l~Dtp 149 (561)
..... .... +..++++|.||||||||||+|.+.. ..++..++ ||++... ...+.+.+|+|||
T Consensus 163 I~eL~--------~~L~-~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l-~~l~~g~~liDTP 232 (352)
T PRK12289 163 LEALL--------EQLR-NKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVEL-FELPNGGLLADTP 232 (352)
T ss_pred HHHHh--------hhhc-cceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEE-EECCCCcEEEeCC
Confidence 43211 1111 1248999999999999999999876 77888888 6766533 3344456999999
Q ss_pred CcccCC
Q psy17315 150 GLVKGA 155 (561)
Q Consensus 150 G~~~~~ 155 (561)
|+..+.
T Consensus 233 G~~~~~ 238 (352)
T PRK12289 233 GFNQPD 238 (352)
T ss_pred Cccccc
Confidence 997544
No 175
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.24 E-value=6.4e-11 Score=111.72 Aligned_cols=151 Identities=18% Similarity=0.155 Sum_probs=96.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
....+|.++|++|+||||+++.|.... ..+.|.-|...... ...+..+.++|.+|-.... ..+-..+.++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i--~~~~~~~~~~d~gG~~~~~-------~~w~~y~~~~ 82 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEI--KYKGYSLTIWDLGGQESFR-------PLWKSYFQNA 82 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEE--EETTEEEEEEEESSSGGGG-------GGGGGGHTTE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCccccccccee--eeCcEEEEEEecccccccc-------ccceeecccc
Confidence 456899999999999999999998765 33333333332211 2234579999999964322 2334456789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhh--h---c
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLG--R---V 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~--~---~ 241 (561)
|++++|+|++..+ ...+....+.+.+.... .+ ++||+|..+.. ...++...+. . .
T Consensus 83 ~~iIfVvDssd~~---------~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~-----~~~~i~~~l~l~~l~~~ 148 (175)
T PF00025_consen 83 DGIIFVVDSSDPE---------RLQEAKEELKELLNDPELKDIPILILANKQDLPDAM-----SEEEIKEYLGLEKLKNK 148 (175)
T ss_dssp SEEEEEEETTGGG---------GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS-----THHHHHHHTTGGGTTSS
T ss_pred ceeEEEEecccce---------eecccccchhhhcchhhcccceEEEEeccccccCcc-----hhhHHHhhhhhhhcccC
Confidence 9999999987422 12222223333222211 11 78999998542 2333333322 1 2
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+.+|.|+.+.++||.+.
T Consensus 149 ~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 149 RPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp SCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred CceEEEeeeccCCcCHHHHHHHHHhc
Confidence 45567899999999999999999874
No 176
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.24 E-value=5.7e-11 Score=116.09 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=88.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
++|+++|.+|||||||++++.+..... ..|....+..........+.+|||||...... +.. ..++.+|+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~----l~~---~~~~~ad~~I 72 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHG----LGS---MYCRGAAAVI 72 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchh----hHH---HHhccCCEEE
Confidence 479999999999999999999776321 12211111111012234689999999754332 222 2368999999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHh-cc--h---hhccccccCcCC----------------CCCccHHHH
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RR--S---VDAKADSKKKMG----------------PKKTDEGEK 234 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~--~---v~NK~D~~~~~~----------------~~~~~~~~l 234 (561)
+|+|.+.++ .+..+...-..+... .. + |+||+|+.+... ...-...+.
T Consensus 73 lV~Dvt~~~----------Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~ 142 (220)
T cd04126 73 LTYDVSNVQ----------SLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA 142 (220)
T ss_pred EEEECCCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence 999876432 122222111111111 11 1 899999975110 000111122
Q ss_pred HHHhhhcC-------------CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KMLLGRVG-------------TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~~~~~-------------~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+-.... ..+.+.+|+++|.|+..++..+.+..
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 22211111 13568999999999999999998764
No 177
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.24 E-value=4.4e-11 Score=112.80 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=89.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||++++++........| ++...... .. ....+.++||||...... + .......+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~~~ 73 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYP-TIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI----L---PQKYSIGI 73 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCc-chhhhEEEEEEECCEEEEEEEEECCChHhhHH----H---HHHHHhhC
Confidence 4799999999999999999997663222222 22221111 11 123578999999753221 1 11234678
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-hc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-LR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+... .++.+..+...+.. .. .+ |+||+|+...... .......+.... ...
T Consensus 74 ~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~ 139 (180)
T cd04137 74 HGYILVYSVTSRK----------SFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV---STEEGKELAESW-GAA 139 (180)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc---CHHHHHHHHHHc-CCe
Confidence 9999999876322 22222222222222 11 12 9999998753222 122223332222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++....
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 140 FLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998764
No 178
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.24 E-value=3.8e-11 Score=111.62 Aligned_cols=149 Identities=18% Similarity=0.239 Sum_probs=89.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+|+++|.||||||||++++..... ...++.++...... ... ...+.+|||||...... ......++.+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~~~~d 73 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLERSIRWAD 73 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc------chHHHHHHhCC
Confidence 489999999999999999986442 22333333211111 111 23588999999864211 11233468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
++++|+|.+.. ..++.+..+...+.... .+ |+||+|+.+...... .....+..... .+
T Consensus 74 ~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~~~~~-~~ 139 (165)
T cd04146 74 GFVLVYSITDR----------SSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST---EEGEKLASELG-CL 139 (165)
T ss_pred EEEEEEECCCH----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH---HHHHHHHHHcC-CE
Confidence 99999987632 22333333333333332 11 899999864432221 22222222222 45
Q ss_pred EEEEEccCC-CCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPN-VGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~-~Gks~l~~~l~~~ 267 (561)
.+.+|+++| .|+..+++.+.+.
T Consensus 140 ~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 140 FFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred EEEeCCCCCchhHHHHHHHHHHH
Confidence 789999999 5999999999875
No 179
>PLN03110 Rab GTPase; Provisional
Probab=99.24 E-value=4.3e-11 Score=116.82 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=93.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+++|++........|..+.+.... .. ....+.+|||||...... .....++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~ 83 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-------ITSAYYR 83 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHHHhC
Confidence 347999999999999999999998763322223222222111 11 123688999999643221 2234468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|.+..+ .+..+..+...+..... + ++||+|+.+...... .....+... ...
T Consensus 84 ~~~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~---~~~~~l~~~-~~~ 149 (216)
T PLN03110 84 GAVGALLVYDITKRQ----------TFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAE---EDGQALAEK-EGL 149 (216)
T ss_pred CCCEEEEEEECCChH----------HHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCH---HHHHHHHHH-cCC
Confidence 899999999875322 22333322222332211 1 899999864433322 122222222 245
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++|.|+..+++++.+..
T Consensus 150 ~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 150 SFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998764
No 180
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.24 E-value=2e-11 Score=113.81 Aligned_cols=152 Identities=11% Similarity=0.105 Sum_probs=84.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
+|+++|.+|||||||++++.+........|-...........+..+.+|||||..... ..+...++++|++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad~ii~ 73 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLR-------KYWKRYLSGSQGLIF 73 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchh-------HHHHHHHhhCCEEEE
Confidence 3799999999999999999976522111121111111111234578999999974322 122345789999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHHh-cch---hhccccccCcCCCCCcc-HHHHHHHhhhcCCCcEEEEEcc
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RRS---VDAKADSKKKMGPKKTD-EGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~---v~NK~D~~~~~~~~~~~-~~~l~~l~~~~~~~~~i~isg~ 252 (561)
|+|++... ...+....+.+.+... ..+ |+||+|+.......... ...+..+.. -.....+.+|++
T Consensus 74 V~D~t~~~---------s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~Sa~ 143 (164)
T cd04162 74 VVDSADSE---------RLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIAR-GRRWILQGTSLD 143 (164)
T ss_pred EEECCCHH---------HHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcC-CCceEEEEeeec
Confidence 99986322 1111111122222111 111 99999987543211000 000111111 123445778888
Q ss_pred C------CCCHHHHHHHHHh
Q psy17315 253 P------NVGKSTFFNVLTK 266 (561)
Q Consensus 253 ~------~~Gks~l~~~l~~ 266 (561)
+ +.|+..+|+.+.+
T Consensus 144 ~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 144 DDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCCChhHHHHHHHHHHHHhc
Confidence 8 9999999988764
No 181
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.23 E-value=7.9e-11 Score=115.24 Aligned_cols=159 Identities=16% Similarity=0.075 Sum_probs=97.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..+||+++|.+|||||||+++++... ....+..|++....... .....+.+|||||...... +. ...++
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~ 84 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----LR---DGYYI 84 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhh----hh---HHHcc
Confidence 45799999999999999999987655 23344444443322111 1124689999999754331 11 23468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+|++++|+|.+.++ .+..+..+...+...... |+||+|+..+... ...+ .+.. .....
T Consensus 85 ~~~~~ilvfD~~~~~----------s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~----~~~~-~~~~-~~~~~ 148 (219)
T PLN03071 85 HGQCAIIMFDVTARL----------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQV-TFHR-KKNLQ 148 (219)
T ss_pred cccEEEEEEeCCCHH----------HHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCC----HHHH-HHHH-hcCCE
Confidence 899999999876322 223333232333322222 8999998643211 1122 1111 12335
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~ 276 (561)
.+.+|+++|.|+..+|.+|..........+.
T Consensus 149 ~~e~SAk~~~~i~~~f~~l~~~~~~~~~~~~ 179 (219)
T PLN03071 149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179 (219)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHcCcchhc
Confidence 6899999999999999999998765544433
No 182
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.23 E-value=6.3e-13 Score=141.04 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hhh-hHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EII-NEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~~-~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..-..|.++|.+|+|||||++.|++..+..+.++++ |.+|.... .+. +..+.+|||||+.+....- +.
T Consensus 156 k~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT--Tl~PnlG~v~~~~~~~~~laD~PGliega~~~--------~g 225 (424)
T PRK12297 156 KLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT--TLVPNLGVVETDDGRSFVMADIPGLIEGASEG--------VG 225 (424)
T ss_pred cccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcc--eeceEEEEEEEeCCceEEEEECCCCccccccc--------ch
Confidence 445679999999999999999999987766666653 44665442 333 4679999999974321100 00
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHH-HH---HHhhh-hccCCceEEEecCC
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADI-EH---LNKLN-LLTAKTQIYLVNLS 394 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~-~~---l~~~~-~l~~kP~iiv~NK~ 394 (561)
....++ +++++++++++|+|.... .. ..+.++. .+ |..+. .+..+|+++|+||+
T Consensus 226 Lg~~fL--------------rhier~~llI~VID~s~~------~~-~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 226 LGHQFL--------------RHIERTRVIVHVIDMSGS------EG-RDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred HHHHHH--------------HHHhhCCEEEEEEeCCcc------cc-CChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 001111 122333444444442110 00 0011111 11 11111 12479999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 395 D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
|. .. ....++.+.+ .. ..+++++||+++.|+++|.+...+.
T Consensus 285 DL--~~-~~e~l~~l~~---~l--~~~i~~iSA~tgeGI~eL~~~L~~~ 325 (424)
T PRK12297 285 DL--PE-AEENLEEFKE---KL--GPKVFPISALTGQGLDELLYAVAEL 325 (424)
T ss_pred CC--cC-CHHHHHHHHH---Hh--CCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 54 21 1222233332 22 3579999999999999986665443
No 183
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.23 E-value=1.5e-10 Score=108.41 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=89.5
Q ss_pred EEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
|+++|.+|||||||++++.+........|........... ....+.++||||...... +. ...++.+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~---~~~~~~~d~~ 73 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR----LR---PLSYPDTDVF 73 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch----hc---hhhcCCCCEE
Confidence 5799999999999999999876332222221111111111 123588999999753321 11 1235789999
Q ss_pred EEEecccccchhhhccchhhHhhhH-HHHHHHHHHhc--ch---hhccccccCcCCC---------CCccHHHHHHHhhh
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLR--RS---VDAKADSKKKMGP---------KKTDEGEKKMLLGR 240 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~--~~---v~NK~D~~~~~~~---------~~~~~~~l~~l~~~ 240 (561)
++|+|.+..+ .+..+ +.+...+.... .+ |+||+|+...... ......+...+...
T Consensus 74 ilv~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 74 LICFSVDSPA----------SFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred EEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 9999875322 22222 12222332221 12 8999999753210 00112223334444
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+....+.+|+++|.|+..+++.+.+..
T Consensus 144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 4444678999999999999999998753
No 184
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.23 E-value=1.3e-10 Score=108.50 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=90.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||++++.+.... ..+..++...... .. ....+.+|||||...... +.. ..++.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~---~~~~~~ 73 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA----MRE---LYIKSG 73 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh----hhH---HHHhhC
Confidence 57999999999999999999876622 1122222111110 11 113578999999754332 222 235778
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|.+++|+|.+..+ .++.+..+...+.... .+ ++||+|....... .......+......-+
T Consensus 74 ~~~vlv~~~~~~~----------s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 140 (168)
T cd04177 74 QGFLLVYSVTSEA----------SLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQV---SREDGVSLSQQWGNVP 140 (168)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCcc---CHHHHHHHHHHcCCce
Confidence 9999999765322 2222322333332211 11 8999998744322 1222233333333346
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++..+.
T Consensus 141 ~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 141 FYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
No 185
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.23 E-value=1.3e-10 Score=108.77 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=90.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcc-c-ccc-C--CeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-N-NKV-P--AFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~-~-~~~-~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...+|+++|.+|||||||++++++....+..+..++..... . ... + ..+.++||+|...... .....+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~ 75 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-------LNDAEL 75 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-------cchhhh
Confidence 34789999999999999999999876432344333322111 0 111 2 3577899998753321 122345
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+++|++++|+|++.++ .+..+..+.+.+... ..+ |+||+|+.+...........+. .......
T Consensus 76 ~~~d~~llv~d~~~~~----------s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~ 142 (169)
T cd01892 76 AACDVACLVYDSSDPK----------SFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFC---RKLGLPP 142 (169)
T ss_pred hcCCEEEEEEeCCCHH----------HHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHH---HHcCCCC
Confidence 8999999999876321 122221111222111 122 9999998643321111122222 2223333
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+.+|.|+..+++.+.+..
T Consensus 143 ~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 143 PLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CEEEEeccCccHHHHHHHHHHHh
Confidence 58999999999999999998864
No 186
>PLN03108 Rab family protein; Provisional
Probab=99.22 E-value=6.5e-11 Score=115.05 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=92.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++........|..+.+.... .. ....+.+|||||...... .....++.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-------~~~~~~~~ 78 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-------ITRSYYRG 78 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHhcc
Confidence 37899999999999999999998763332223222221111 11 123588999999753221 12344678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+..+ .+..+..+...+.... .+ ++||+|+.+...... .....+.... ..+
T Consensus 79 ad~~vlv~D~~~~~----------s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~ 144 (210)
T PLN03108 79 AAGALLVYDITRRE----------TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST---EEGEQFAKEH-GLI 144 (210)
T ss_pred CCEEEEEEECCcHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCH---HHHHHHHHHc-CCE
Confidence 99999999876322 2222322222222221 11 899999976543321 2222222222 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+|.++....
T Consensus 145 ~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 145 FMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999988764
No 187
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.22 E-value=1.4e-11 Score=119.51 Aligned_cols=143 Identities=15% Similarity=0.054 Sum_probs=83.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC-Cccc------------------------------CCCcccccCcccc--ccCCeEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS-AAAE------------------------------NFPFCTIDPNENN--KVPAFLN 144 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~-~~~~------------------------------~~~~~T~~~~~~~--~~~~~i~ 144 (561)
+|+++|.||+|||||+|+|.... ...+ ..+|+|++..... ..+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 48999999999999999997644 2111 1266777664432 2345799
Q ss_pred EEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhccccc
Q psy17315 145 VVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDAKADS 220 (561)
Q Consensus 145 l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~NK~D~ 220 (561)
++||||..... ......++.+|++++|+|++... ..+.......+.... .. |.||+|+
T Consensus 81 liDTpG~~~~~-------~~~~~~~~~ad~~llVvD~~~~~-----------~~~~~~~~~~~~~~~~~~iIvviNK~D~ 142 (208)
T cd04166 81 IADTPGHEQYT-------RNMVTGASTADLAILLVDARKGV-----------LEQTRRHSYILSLLGIRHVVVAVNKMDL 142 (208)
T ss_pred EEECCcHHHHH-------HHHHHhhhhCCEEEEEEECCCCc-----------cHhHHHHHHHHHHcCCCcEEEEEEchhc
Confidence 99999974221 12344578999999999986311 000001111122222 22 6899999
Q ss_pred cCcCCCC-CccHHHHHHHhhhcC--CCcEEEEEccCCCCHH
Q psy17315 221 KKKMGPK-KTDEGEKKMLLGRVG--TNLKVGIVGVPNVGKS 258 (561)
Q Consensus 221 ~~~~~~~-~~~~~~l~~l~~~~~--~~~~i~isg~~~~Gks 258 (561)
....... ......+..+...+. ..+.+.+||++|.|+.
T Consensus 143 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~ 183 (208)
T cd04166 143 VDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCc
Confidence 7421100 001122333333333 3458999999999974
No 188
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.22 E-value=2.1e-10 Score=107.43 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=88.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|+|||||++++.+..... .+..++.+.... ...+ ..+.+|||||...... +.. ..++.+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~---~~~~~~ 72 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPE-EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----LRP---LSYPMT 72 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----ccc---ccCCCC
Confidence 479999999999999999998766221 111111111110 1111 2477999999754322 111 235788
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcc--h---hhccccccCcCCCC---------CccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRR--S---VDAKADSKKKMGPK---------KTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~--~---v~NK~D~~~~~~~~---------~~~~~~l~~l 237 (561)
|++++|+|....+ .++.+. .+...+..... + ++||+|+.+..... .........+
T Consensus 73 ~~~ilv~~~~~~~----------s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (174)
T cd04135 73 DVFLICFSVVNPA----------SFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKL 142 (174)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 9999999765322 222221 22223322211 1 89999986542110 1112223333
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+....+.+|+++|.|+++++..+.+.
T Consensus 143 ~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 143 AKEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 333444467899999999999999998765
No 189
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.22 E-value=1.9e-10 Score=108.36 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=90.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc---ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+||+++|.+|||||||++++..........|.......... .....+.+|||||...... +. ...++.+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~a~ 74 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR----LR---PLSYPQTD 74 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhh----hh---hhhcccCC
Confidence 58999999999999999999976532111222111110001 1124688999999854321 11 22468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhc--ch---hhccccccCcCCCC---------CccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLR--RS---VDAKADSKKKMGPK---------KTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~---v~NK~D~~~~~~~~---------~~~~~~l~~l~ 238 (561)
++++|+|.+.++ .++.+. .+...+.... .+ |+||+|+.+..... .....+...+.
T Consensus 75 ~~ilv~d~~~~~----------s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 75 VFLVCFSVVSPS----------SFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 999999876322 222221 2222332221 12 99999986542110 11112222233
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
........+.+|+++|.|+..+++.+...
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 33344578999999999999999998764
No 190
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.21 E-value=9.4e-11 Score=109.69 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=90.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||++++++........|..+.+.... . .....+.++||||...... .+ ....++++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~---~~~~~~~~ 76 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK---SM---VQHYYRNV 76 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH---hh---HHHhhcCC
Confidence 6899999999999999999987653222222222111111 1 1123688999999743221 11 12335889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+.+...........+. .. ....
T Consensus 77 d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---~~-~~~~ 142 (170)
T cd04115 77 HAVVFVYDVTNMA----------SFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA---DA-HSMP 142 (170)
T ss_pred CEEEEEEECCCHH----------HHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH---HH-cCCc
Confidence 9999999876322 2233333333333322 11 8999999765443222222222 22 2356
Q ss_pred EEEEEccC---CCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVP---NVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~---~~Gks~l~~~l~~~ 267 (561)
.+.+|+++ +.|+.+++..+...
T Consensus 143 ~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 143 LFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred EEEEeccCCcCCCCHHHHHHHHHHH
Confidence 78899999 88999999988764
No 191
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.20 E-value=2.5e-10 Score=109.00 Aligned_cols=156 Identities=18% Similarity=0.125 Sum_probs=90.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.+|+++|.+|||||||++++.+........|........... ....+.++||||...... +.. ..++.+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~----l~~---~~~~~a~ 73 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR----LRS---LSYADTD 73 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc----ccc---ccccCCC
Confidence 379999999999999999999765221111211111110011 123588999999753321 111 2357899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcc--h---hhccccccCcCCCC---------CccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRR--S---VDAKADSKKKMGPK---------KTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~--~---v~NK~D~~~~~~~~---------~~~~~~l~~l~ 238 (561)
++++|+|.+..+ .++.+. .+...+..... + |+||+|+.+..... .....+...+.
T Consensus 74 ~~ilv~dv~~~~----------sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 74 VIMLCFSVDSPD----------SLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 999999765322 222222 12222222211 1 89999997543211 01111122222
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
........+.+|+++|.|+..+|.++.+..+
T Consensus 144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 144 KRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 2223345789999999999999999998753
No 192
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.20 E-value=3.4e-11 Score=110.84 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=86.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+. .+. ... .+... ...+.+|||+|.+ .+..+...+.+....++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~l~~~~~~~~~~~i 77 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT-IED--SYRKQVVIDGETCLLDILDTAGQE-EYSAMRDQYMRTGEGFL 77 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCc-chh--eEEEEEEECCEEEEEEEEECCCCc-chHHHHHHHHhcCCEEE
Confidence 36899999999999999999988654432221 111 111 11111 2346789999954 45555555544333222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..+... +.........|+++|+||+|. ..
T Consensus 78 ~v~----------------~~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piivv~nK~Dl--~~- 120 (162)
T cd04138 78 CVF----------------AINSRKSFEDIHTYREQ------------------IKRVKDSDDVPMVLVGNKCDL--AA- 120 (162)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--cc-
Confidence 211 11222333322222211 111111247899999999954 32
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.......+.++.+.. +.+++++||++|.|++++.+..
T Consensus 121 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 121 RTVSSRQGQDLAKSY--GIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred ceecHHHHHHHHHHh--CCeEEEecCCCCCCHHHHHHHH
Confidence 222334444554443 5689999999999998875543
No 193
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.20 E-value=2e-10 Score=114.36 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=93.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.+|||||||++++.+..... .+..++.+.... ... ...+.+|||||...... +. ...++.+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~----~~---~~~~~~a 72 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA----MR---RLSILTG 72 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH----HH---HHHhccC
Confidence 379999999999999999998765322 232333222211 111 13578999999753221 11 1235789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh------------cch---hhccccccCcCCCCCccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL------------RRS---VDAKADSKKKMGPKKTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------------~~~---v~NK~D~~~~~~~~~~~~~~l~~l 237 (561)
|++++|+|.+. ...++.+..+.+++.+. ..+ |+||+|+...... ...++..+
T Consensus 73 d~iIlVfdv~~----------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v---~~~ei~~~ 139 (247)
T cd04143 73 DVFILVFSLDN----------RESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV---QRDEVEQL 139 (247)
T ss_pred CEEEEEEeCCC----------HHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc---CHHHHHHH
Confidence 99999998753 22334444444444332 111 9999999753222 23334444
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.........+.+|+++|.|++.++++|....
T Consensus 140 ~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 140 VGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3332344679999999999999999998853
No 194
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.20 E-value=2.4e-11 Score=112.29 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=85.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+||++|++.+....+.....+.+ + +... .+... ...+.+|||+|.++ +..+...+.++...++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~~~i 77 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-E--DSYRKQIEVDGQQCMLEILDTAGTEQ-FTAMRDLYIKNGQGFV 77 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCch-h--hhEEEEEEECCEEEEEEEEECCCccc-cchHHHHHhhcCCEEE
Confidence 478999999999999999999876543322211 1 1111 12122 23577899999543 5555544443333222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..++.. +........+|+++|+||+|. ...
T Consensus 78 lv~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~ 121 (163)
T cd04136 78 LVY----------------SITSQSSFNDLQDLREQ------------------ILRVKDTENVPMVLVGNKCDL--EDE 121 (163)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--ccc
Confidence 211 12222333333333221 111111146899999999954 221
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+...++.+.. +.+++++||++|.|+.++.+..
T Consensus 122 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 122 RVVSREEGQALARQW--GCPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred ceecHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHH
Confidence 222233333444433 4789999999999988875543
No 195
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.20 E-value=3.9e-10 Score=105.65 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=87.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.||+++|.+|||||||++++.+........| +....... .. ....+.++||||...... +. ...++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~~ 73 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGQEDYDR----LR---PLSYPDT 73 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ccccceEEEEEECCEEEEEEEEeCCCchhhhh----cc---ccccCCC
Confidence 4799999999999999999997652211111 11111111 11 123578999999743221 11 1235889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhc--ch---hhccccccCcCCCC---------CccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLR--RS---VDAKADSKKKMGPK---------KTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~---v~NK~D~~~~~~~~---------~~~~~~l~~l 237 (561)
|++++|+|.+..+ .++.+. .+...+.... .+ ++||+|+.+..... .........+
T Consensus 74 d~~i~v~~~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~ 143 (175)
T cd01870 74 DVILMCFSIDSPD----------SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 143 (175)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHH
Confidence 9999999765321 222221 2222232221 12 89999987542211 0011122222
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.........+.+|+++|.|+.+++.++.+.
T Consensus 144 ~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 144 ANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 222334467999999999999999999864
No 196
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.19 E-value=2.1e-10 Score=110.32 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=89.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccC--CeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVP--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
||+++|.+|||||||++++.+.... ..++.++.+.... ...+ ..+.++||||...... +. ...++.+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~---~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA----MR---KLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH----HH---HHHhhcCC
Confidence 5899999999999999999976632 2222232221111 1111 3588999999754321 11 12468899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+... .+..+..+...+.... .+ ++||+|+.+...... ................
T Consensus 73 ~vilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~--~~~~~~~~~~~~~~~~ 140 (198)
T cd04147 73 AFALVYAVDDPE----------SFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP--AKDALSTVELDWNCGF 140 (198)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc--HHHHHHHHHhhcCCcE
Confidence 999999876321 2223333333333322 12 899999975422111 1111111111122356
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|+..+++++.+..
T Consensus 141 ~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 141 VETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998864
No 197
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.19 E-value=1.4e-10 Score=113.72 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=88.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCC--Ccc-cccCccc--cccCCeEEEEeCCCcccCCccccccccccccccc-
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENF--PFC-TIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS- 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~--~~~-T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~- 170 (561)
++|+++|.+|||||||++++++.......+ ++. .....+. ......+.+|||||... .+... .++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~~~---~~~~ 71 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM------WTEDS---CMQY 71 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch------HHHhH---Hhhc
Confidence 479999999999999999997554221111 110 1100010 11234688999999851 11111 234
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .++.+..+...+.... .+ |+||+|+.+...... .+...+... ..
T Consensus 72 ~ad~iilV~d~td~~----------S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~---~~~~~~a~~-~~ 137 (221)
T cd04148 72 QGDAFVVVYSVTDRS----------SFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV---QEGRACAVV-FD 137 (221)
T ss_pred CCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH---HHHHHHHHH-cC
Confidence 899999999886422 2233333333333322 12 899999875433221 112222222 23
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
...+.+|+.+|.|+..+++++.+...
T Consensus 138 ~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 138 CKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998753
No 198
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.18 E-value=5.2e-10 Score=104.95 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=89.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
+|++++|.+|||||||++++.+.... ..++.++.+.... .. ....+.+|||||...... +. -..++.+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~---~~~~~~a 72 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP-TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK----LR---PLCYPDT 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc----cc---ccccCCC
Confidence 47999999999999999999865422 2233333221111 11 123578999999854332 11 1246889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhc--ch---hhccccccCcCCC---------CCccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLR--RS---VDAKADSKKKMGP---------KKTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~--~~---v~NK~D~~~~~~~---------~~~~~~~l~~l 237 (561)
|++++|+|.+.++ .+..+ ..+...+.... .+ ++||+|+.+..+. ......+...+
T Consensus 73 ~~~i~v~d~~~~~----------sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 73 DVFLLCFSVVNPS----------SFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred cEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 9999999876322 12222 11222222211 12 8999998754321 01112223333
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHH
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLT 265 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~ 265 (561)
.........+.+|+++|.|+..+++.+.
T Consensus 143 a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 143 AEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 3344445789999999999999998874
No 199
>KOG1489|consensus
Probab=99.18 E-value=6.4e-13 Score=131.10 Aligned_cols=163 Identities=18% Similarity=0.300 Sum_probs=98.9
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh-hh-HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI-IN-EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~-~~-~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
+.-..+.++|.||+|||||+++|+...+..+.|+|+ |+.|..+... .+ .++.+.|+||+.+.... .+-
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFT--TL~P~iG~v~yddf~q~tVADiPGiI~GAh~--------nkG 263 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFT--TLRPHIGTVNYDDFSQITVADIPGIIEGAHM--------NKG 263 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCccccccee--eeccccceeeccccceeEeccCccccccccc--------cCc
Confidence 455678999999999999999999999999999884 4555544222 12 23778888887543111 111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCH-----HHHHHHHhhhhccCCceEEEecCC
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSN-----ADIEHLNKLNLLTAKTQIYLVNLS 394 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~-----~e~~~l~~~~~l~~kP~iiv~NK~ 394 (561)
.-..+| +||++++.+..|+|.-.. . ...+|.. .|++.++. .+.++|.++|+||+
T Consensus 264 lG~~FL--------------rHiER~~~l~fVvD~s~~----~-~~~p~~~~~lL~~ELe~yek--~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 264 LGYKFL--------------RHIERCKGLLFVVDLSGK----Q-LRNPWQQLQLLIEELELYEK--GLADRPALIVANKI 322 (366)
T ss_pred ccHHHH--------------HHHHhhceEEEEEECCCc----c-cCCHHHHHHHHHHHHHHHhh--hhccCceEEEEecc
Confidence 112221 356666666655553111 0 0112221 12222221 24789999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 395 D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
|. .+.....+..+.+.+. +..|+|+||++++|+.+|....+
T Consensus 323 D~--~eae~~~l~~L~~~lq----~~~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 323 DL--PEAEKNLLSSLAKRLQ----NPHVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred Cc--hhHHHHHHHHHHHHcC----CCcEEEeeeccccchHHHHHHHh
Confidence 65 2222333455554442 34599999999999988855443
No 200
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.18 E-value=1.5e-10 Score=110.94 Aligned_cols=141 Identities=16% Similarity=0.072 Sum_probs=80.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-Cccc---------------CCCcccccCccc--cccCCeEEEEeCCCcccCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAE---------------NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEG 158 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~---------------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~ 158 (561)
.+|+++|.+|||||||+|+|++.. .... ...|+|...... ......+.++||||......
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-- 80 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG-- 80 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH--
Confidence 369999999999999999998632 1111 123444443221 12244789999999854221
Q ss_pred cccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHH
Q psy17315 159 QGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKK 235 (561)
Q Consensus 159 ~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~ 235 (561)
.....++.+|++++|+|++.. .......+...+.....+ ++||+|+..... ......+.
T Consensus 81 -----~~~~~~~~~d~~ilV~d~~~~-----------~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~ 142 (194)
T cd01891 81 -----EVERVLSMVDGVLLLVDASEG-----------PMPQTRFVLKKALELGLKPIVVINKIDRPDARP--EEVVDEVF 142 (194)
T ss_pred -----HHHHHHHhcCEEEEEEECCCC-----------ccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH--HHHHHHHH
Confidence 223456889999999987631 011111111122222222 899999974211 01112222
Q ss_pred HHhhhc------CCCcEEEEEccCCCCH
Q psy17315 236 MLLGRV------GTNLKVGIVGVPNVGK 257 (561)
Q Consensus 236 ~l~~~~------~~~~~i~isg~~~~Gk 257 (561)
...... ...+.+.+||++|.|.
T Consensus 143 ~~~~~~~~~~~~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 143 DLFIELGATEEQLDFPVLYASAKNGWAS 170 (194)
T ss_pred HHHHHhCCccccCccCEEEeehhccccc
Confidence 222111 1346799999999765
No 201
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.17 E-value=1.3e-10 Score=113.39 Aligned_cols=171 Identities=16% Similarity=0.095 Sum_probs=110.6
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc---ccCCeEEEEeCCCcccCCccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
...++.+.++|.+|+|||||||+|.... ..++..+-+|. +.... .....+.||||||+..+...+......+.+.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~-~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTD-ITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCC-chhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 3456889999999999999999999766 44554443443 33321 2335799999999987666555566667788
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhccccccCcC-----C---CCCccHHHHHH
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDAKADSKKKM-----G---PKKTDEGEKKM 236 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~NK~D~~~~~-----~---~~~~~~~~l~~ 236 (561)
+...|++++++|+.++.+. ...+.+.+.+.... .+ +.|.+|..... + +..+....+++
T Consensus 115 l~~~DLvL~l~~~~draL~----------~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 115 LPKLDLVLWLIKADDRALG----------TDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred hhhccEEEEeccCCCcccc----------CCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 8899999999987644322 22233333333322 22 78888887552 1 11222222322
Q ss_pred Hhhh----c-CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcc
Q psy17315 237 LLGR----V-GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDV 274 (561)
Q Consensus 237 l~~~----~-~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v 274 (561)
-.+. + .-.+.+..+|+.+-|++.|..++....+.....
T Consensus 185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs 227 (296)
T COG3596 185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEARS 227 (296)
T ss_pred HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccccc
Confidence 2111 1 345778888999999999999999987644443
No 202
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.17 E-value=5.6e-10 Score=105.13 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=88.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCc----cccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN----ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~----~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++++++|.+|||||||+.++..........|. ..+.. ........+.++||||...... +. ...++.+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~~ 73 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-VFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----LR---PLSYPQT 73 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCc-ceeeeEEEEEECCEEEEEEEEECCCchhhhh----hh---hhhcCCC
Confidence 58999999999999999999875422111111 11100 0011123588999999743321 11 2246789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhc--ch---hhccccccCcCC---------CCCccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLR--RS---VDAKADSKKKMG---------PKKTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~---v~NK~D~~~~~~---------~~~~~~~~l~~l 237 (561)
|++++|+|.+.++ .+..+. .+...+.... .+ |+||+|+.+... .......+...+
T Consensus 74 d~~ilv~d~~~~~----------sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 143 (174)
T cd01871 74 DVFLICFSLVSPA----------SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 143 (174)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHH
Confidence 9999999876322 222221 1222222211 11 899999964321 001112222233
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+....+.+|+++|.|+..+++.+.+.
T Consensus 144 ~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 144 AKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 333333467899999999999999998753
No 203
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.17 E-value=8.1e-12 Score=117.16 Aligned_cols=168 Identities=25% Similarity=0.313 Sum_probs=100.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+-|++.|++|+|||||+|+|+++. ..+.++.+||.|..+.-+++ +.++.++|+||+- +.+..+......+..+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k-~LArtSktPGrTq~iNff~~-~~~~~lVDlPGYG--yAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQK-NLARTSKTPGRTQLINFFEV-DDELRLVDLPGYG--YAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCc-ceeecCCCCCccceeEEEEe-cCcEEEEeCCCcc--cccCCHHHHHHHHHHHH
Confidence 34679999999999999999999963 34667778888844433333 3458899999962 33333332222333334
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK- 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~- 401 (561)
+||+... + +..++. +.+ ..+ ...+.|.+.+..+.. .+.|+++|+||+|+ +..
T Consensus 99 ~YL~~R~----------------~-L~~vvl-liD--~r~----~~~~~D~em~~~l~~-~~i~~~vv~tK~DK--i~~~ 151 (200)
T COG0218 99 EYLEKRA----------------N-LKGVVL-LID--ARH----PPKDLDREMIEFLLE-LGIPVIVVLTKADK--LKKS 151 (200)
T ss_pred HHHhhch----------------h-heEEEE-EEE--CCC----CCcHHHHHHHHHHHH-cCCCeEEEEEcccc--CChh
Confidence 4433221 1 111111 112 222 345556676665554 68999999999954 432
Q ss_pred -ccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHH
Q psy17315 402 -KNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 -~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+..+.+.+....+.. .++.+|+.++.|+++|.....
T Consensus 152 ~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~ 193 (200)
T COG0218 152 ERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKIL 193 (200)
T ss_pred HHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHH
Confidence 2233455554443332222 288899999999887754443
No 204
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.16 E-value=5.7e-11 Score=113.98 Aligned_cols=143 Identities=18% Similarity=0.118 Sum_probs=84.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC----------------cccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA----------------AAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG 158 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~----------------~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~ 158 (561)
++|+++|.+|+|||||+++|++... ......|+|.+..... ..+.++.++||||...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 6799999999999999999986410 0011456666543321 2345789999999852
Q ss_pred cccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHH
Q psy17315 159 QGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 159 ~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l 234 (561)
+.......+..+|++++|+|+... ...+-..+-..+.....+ +.||+|+............++
T Consensus 78 --~~~~~~~~~~~~D~~ilVvda~~g-----------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i 144 (195)
T cd01884 78 --YIKNMITGAAQMDGAILVVSATDG-----------PMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEV 144 (195)
T ss_pred --HHHHHHHHhhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHH
Confidence 223345667889999999987521 000111112223333332 689999963211111112234
Q ss_pred HHHhhhcC----CCcEEEEEccCCCCH
Q psy17315 235 KMLLGRVG----TNLKVGIVGVPNVGK 257 (561)
Q Consensus 235 ~~l~~~~~----~~~~i~isg~~~~Gk 257 (561)
..++.... ..+.+++||.+|.+.
T Consensus 145 ~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 145 RELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHhcccccCCeEEEeeCccccCC
Confidence 44443332 356899999998863
No 205
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.16 E-value=9.6e-11 Score=112.55 Aligned_cols=165 Identities=15% Similarity=0.082 Sum_probs=94.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-Cccc-CCCcccccCcccc--ccCCeEEEEeCCCcccCCcccc----ccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAE-NFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQ----GLGNAFLSH 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~-~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~----~~~~~~l~~ 168 (561)
++|+++|.||||||||+|+|+|.. ..++ ..+++|+..+... ..+..+.++||||+........ .+...+...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 369999999999999999999987 3333 2568888766542 3456899999999986542211 222223334
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHH----HhcchhhccccccCcCCCCC---ccHHHHHHHhhhc
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIR----DLRRSVDAKADSKKKMGPKK---TDEGEKKMLLGRV 241 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~v~NK~D~~~~~~~~~---~~~~~l~~l~~~~ 241 (561)
....|++++|+|+.. . ......-++.+.+.+- .....+.+++|......... .....+..+....
T Consensus 81 ~~g~~~illVi~~~~--~------t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c 152 (196)
T cd01852 81 APGPHAFLLVVPLGR--F------TEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC 152 (196)
T ss_pred CCCCEEEEEEEECCC--c------CHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh
Confidence 577899999997642 0 0011111222222111 11112788888875432211 1123455555543
Q ss_pred CCCcEEEE-----EccCCCCHHHHHHHHHhhccC
Q psy17315 242 GTNLKVGI-----VGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 242 ~~~~~i~i-----sg~~~~Gks~l~~~l~~~~~~ 270 (561)
... ...+ ++..+.+...|+..+.+...+
T Consensus 153 ~~r-~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 153 GGR-YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CCe-EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 221 1222 345667888888888776433
No 206
>PRK15494 era GTPase Era; Provisional
Probab=99.15 E-value=5.4e-12 Score=131.35 Aligned_cols=201 Identities=20% Similarity=0.277 Sum_probs=111.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+.+.|.+|+|||+|+|.+.+..+ +.+++.++|| +.... +...+.++.+|||||+.+....+...+.+....
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~--- 127 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWS--- 127 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHH---
Confidence 4799999999999999999998744 3455555554 22222 233456789999999854333333222111000
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+..+|+++.|++.. ..+...+..++..... ..+|.++|+||+|. ..
T Consensus 128 ------------------~l~~aDvil~VvD~~----------~s~~~~~~~il~~l~~-~~~p~IlViNKiDl--~~-- 174 (339)
T PRK15494 128 ------------------SLHSADLVLLIIDSL----------KSFDDITHNILDKLRS-LNIVPIFLLNKIDI--ES-- 174 (339)
T ss_pred ------------------HhhhCCEEEEEEECC----------CCCCHHHHHHHHHHHh-cCCCEEEEEEhhcC--cc--
Confidence 011224443332210 1223333344443332 35788899999954 32
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH-------HHHhcccc----hHHHHHH-HHHcccCceec
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY-------LDEQKATS----VLDKIIT-QGYKSLQLQYF 470 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~-------~~~~~~~~----~l~~li~-~~~~~l~li~~ 470 (561)
.....+.+++....++.+++++||++|.|+++|.+...... .+.+.... ....+++ .++..++=-..
T Consensus 175 -~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP 253 (339)
T PRK15494 175 -KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELP 253 (339)
T ss_pred -ccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccC
Confidence 12445555555443457899999999999998876554421 11111111 1223333 35555544444
Q ss_pred cccCCCceeccccCC
Q psy17315 471 FTAGQDEVKAWTIQK 485 (561)
Q Consensus 471 ~t~~~~ev~a~~~~~ 485 (561)
|... -+++.|....
T Consensus 254 ~~~~-v~i~~~~~~~ 267 (339)
T PRK15494 254 YKLT-VQTEKWEDLK 267 (339)
T ss_pred ceEE-EEEEEEEEcC
Confidence 5544 4558887654
No 207
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.15 E-value=1.3e-10 Score=108.34 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=93.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..|.....+++..+. ....+...+ ..+.+|||+|.+ .+..+...+.+....++.
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~l~l~D~~g~~-~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDF-KIRTIELDGKKIKLQIWDTAGQE-RFRTITTAYYRGAMGIIL 81 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceE-EEEEEEECCEEEEEEEEeCCchH-HHHHHHHHHhCCCCEEEE
Confidence 5799999999999999999999877655444322111 112222222 367899999954 355544444333322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +.... ....|+++|+||+|. .+..
T Consensus 82 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~p~iiv~nK~Dl--~~~~ 124 (167)
T cd01867 82 VY----------------DITDEKSFENIRNWMRN------------------IEEHA-SEDVERMLVGNKCDM--EEKR 124 (167)
T ss_pred EE----------------ECcCHHHHHhHHHHHHH------------------HHHhC-CCCCcEEEEEECccc--cccc
Confidence 11 12223344433333322 11111 136899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
....+...++++.. +.+++++||+++.|+.++.++..+.+
T Consensus 125 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 125 VVSKEEGEALADEY--GIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 23344555555544 56899999999999988866655443
No 208
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.15 E-value=3.2e-11 Score=114.09 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=84.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH---------HHHHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK---------EINKIEKLV 313 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~---------~~~~l~~~~ 313 (561)
....|.+.|.+|+|||+|+|.+++..+ ...++..+|++....-+.. +..+.+|||||+.. .+..+...+
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKK-LARTSKTPGRTQLINFFEV-NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC-cccccCCCCcceEEEEEEe-CCcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 457899999999999999999998742 2233444454411111111 24689999999631 122111111
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
.+.. ...+.+..|++. . ......+...+..... ..+|+++|+||
T Consensus 95 l~~~-------------------------~~~~~ii~vvd~------~----~~~~~~~~~~~~~~~~-~~~pviiv~nK 138 (179)
T TIGR03598 95 LEKR-------------------------ENLKGVVLLMDI------R----HPLKELDLEMLEWLRE-RGIPVLIVLTK 138 (179)
T ss_pred HHhC-------------------------hhhcEEEEEecC------C----CCCCHHHHHHHHHHHH-cCCCEEEEEEC
Confidence 1100 001222222221 0 1233444444443332 47999999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhC
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLV 434 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~ 434 (561)
+|...........+++++.+.......+++++||++|.|++
T Consensus 139 ~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 139 ADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 96422111223455666666554223579999999999974
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.15 E-value=7.8e-11 Score=105.80 Aligned_cols=139 Identities=16% Similarity=0.149 Sum_probs=90.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
.+|++||.+++|||||+++|.+...... .|... ... =.+|||||-.-..+ .+..+++....+||+|+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~----KTq~i----~~~--~~~IDTPGEyiE~~---~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK----KTQAI----EYY--DNTIDTPGEYIENP---RFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC----cccee----Eec--ccEEECChhheeCH---HHHHHHHHHHhhCCEEE
Confidence 3799999999999999999998663221 22111 112 23599999764332 34455666678999999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccC
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVP 253 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~ 253 (561)
+|.|++.....+.. ....-..++ |.+|+|+.+. .++.......+...+-...+.+|+.+
T Consensus 69 ll~dat~~~~~~pP--------------~fa~~f~~pvIGVITK~Dl~~~----~~~i~~a~~~L~~aG~~~if~vS~~~ 130 (143)
T PF10662_consen 69 LLQDATEPRSVFPP--------------GFASMFNKPVIGVITKIDLPSD----DANIERAKKWLKNAGVKEIFEVSAVT 130 (143)
T ss_pred EEecCCCCCccCCc--------------hhhcccCCCEEEEEECccCccc----hhhHHHHHHHHHHcCCCCeEEEECCC
Confidence 99998743311110 000111122 7889998732 12333444555555666679999999
Q ss_pred CCCHHHHHHHHHh
Q psy17315 254 NVGKSTFFNVLTK 266 (561)
Q Consensus 254 ~~Gks~l~~~l~~ 266 (561)
|.|+..|..+|.+
T Consensus 131 ~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 131 GEGIEELKDYLEE 143 (143)
T ss_pred CcCHHHHHHHHhC
Confidence 9999999998853
No 210
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.15 E-value=7.3e-10 Score=104.61 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=92.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCc-cccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPN-ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~-~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+|++++|.++||||||+.++....... .+..+.+.... ........+.+|||+|...... + ....++.+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~----~---~~~~~~~a~ 74 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR----L---RPLSYRGAD 74 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc----c---chhhcCCCc
Confidence 579999999999999999999765321 12111111000 0001124688999999754332 1 123568999
Q ss_pred EEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcCC-----C--CCccHHHHHHHhhh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKMG-----P--KKTDEGEKKMLLGR 240 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~~-----~--~~~~~~~l~~l~~~ 240 (561)
++++|+|.+.++ .++++ ..+...+...... |+||+|+.+... + ......+...+...
T Consensus 75 ~~ilvyd~~~~~----------Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 75 VFVLAFSLISRA----------SYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred EEEEEEEcCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 999999876322 23333 2222233322111 999999965421 0 01122233333333
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
......+.+|+++|.|+..+|+.+.+.
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 333357899999999999999999875
No 211
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.14 E-value=5.5e-11 Score=118.18 Aligned_cols=131 Identities=18% Similarity=0.084 Sum_probs=81.3
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhh-cCCCCc-----cCCCChHHH-HHHHHHHHhcCCCc--cccccccC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILI-SDKPTW-----GDGDGPKAP-KRRKQHLSDKLRPK--ADSKKKMG 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~-~~k~~l-----~DL~~~~~~-~~w~~~l~~~~~~~--~~~~~~~~ 77 (561)
+..+.|.|++.| ..|.+. +++....+. .+.|.+ +||.+.... ..|.+.+++.+..+ ++++.+.+
T Consensus 38 D~viiV~d~~~p------~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~g 110 (245)
T TIGR00157 38 DQIVIVSSAVLP------ELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDG 110 (245)
T ss_pred CEEEEEEECCCC------CCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchh
Confidence 556899999999 544433 333111111 233333 999865544 47888887766655 66666554
Q ss_pred CCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCC-------cccccCccccccCCeEEEEeCC
Q psy17315 78 PKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFP-------FCTIDPNENNKVPAFLNVVDIA 149 (561)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~-------~~T~~~~~~~~~~~~i~l~Dtp 149 (561)
..... . . . ....++++|.||||||||+|+|.+.. ..+++.+ +||++... ... ...+++|||
T Consensus 111 i~eLf--~-~-----l-~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l-~~l-~~~~liDtP 179 (245)
T TIGR00157 111 LKELI--E-A-----L-QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL-FHF-HGGLIADTP 179 (245)
T ss_pred HHHHH--h-h-----h-cCCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE-EEc-CCcEEEeCC
Confidence 33211 1 0 0 12468999999999999999999875 4444443 36665433 223 346899999
Q ss_pred CcccCC
Q psy17315 150 GLVKGA 155 (561)
Q Consensus 150 G~~~~~ 155 (561)
|+....
T Consensus 180 G~~~~~ 185 (245)
T TIGR00157 180 GFNEFG 185 (245)
T ss_pred CccccC
Confidence 997644
No 212
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.14 E-value=1.1e-10 Score=108.05 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=84.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.++.+.|.+|+||++|++.+.+..+.....+.+.........+......+.+|||||.++ +..+...+.+....++..+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE-FSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc-hhHHHHHHHhhCCEEEEEE
Confidence 579999999999999999998875532222111101100001111123577899999543 4445444443332222111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
.+.+...+..+..+... +.........|+++|+||+|.. .....
T Consensus 82 ----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piiiv~NK~Dl~--~~~~~ 125 (164)
T cd04145 82 ----------------SVTDRGSFEEVDKFHTQ------------------ILRVKDRDEFPMILVGNKADLE--HQRKV 125 (164)
T ss_pred ----------------ECCCHHHHHHHHHHHHH------------------HHHHhCCCCCCEEEEeeCcccc--cccee
Confidence 11222222222222211 1111111368999999999643 21222
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..+...++++.. +.+++++||++|.|+.++.+..
T Consensus 126 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 126 SREEGQELARKL--KIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred cHHHHHHHHHHc--CCcEEEeeCCCCCCHHHHHHHH
Confidence 233445555443 5689999999999998875543
No 213
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.14 E-value=7.2e-11 Score=112.64 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=91.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCccc------------------CCCcccccCccc--c--ccCCeEEEEeCCCcccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAE------------------NFPFCTIDPNEN--N--KVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~------------------~~~~~T~~~~~~--~--~~~~~i~l~DtpG~~~~ 154 (561)
..|+++|..++|||||+++|++...... ...+.|.+.... . .....+.++||||....
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 5799999999999999999985442111 112344433222 1 23457999999997432
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccH
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~ 231 (561)
.......++.+|++++|+|+... ... .....-..+.....+ ++||+|..+. .+. ...
T Consensus 84 -------~~~~~~~~~~~D~ailvVda~~g-------~~~----~~~~~l~~~~~~~~p~ivvlNK~D~~~~-~~~-~~~ 143 (188)
T PF00009_consen 84 -------IKEMIRGLRQADIAILVVDANDG-------IQP----QTEEHLKILRELGIPIIVVLNKMDLIEK-ELE-EII 143 (188)
T ss_dssp -------HHHHHHHHTTSSEEEEEEETTTB-------STH----HHHHHHHHHHHTT-SEEEEEETCTSSHH-HHH-HHH
T ss_pred -------eecccceecccccceeeeecccc-------ccc----ccccccccccccccceEEeeeeccchhh-hHH-HHH
Confidence 22334557899999999987521 011 111122233333333 8999999811 000 011
Q ss_pred HHHH-HHhhhcC-----CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 232 GEKK-MLLGRVG-----TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 232 ~~l~-~l~~~~~-----~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+. .+..... ..+.+++||.+|.|+..|++.+.+..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 1111 2222222 34789999999999999999998764
No 214
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.14 E-value=1.9e-10 Score=108.44 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=92.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh------------hhhHhhhcccHHHHHHHHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE------------IINEELRLKDVEHIEKEINKIEK 311 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~------------~~~~el~l~Dt~Gi~~~~~~l~~ 311 (561)
..+|.+.|.+|+||++|++.+.+..+.....+.+...... ..+. .....+.+|||+|.+ .+..+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~~~ 81 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFRE-KRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-RFRSLTT 81 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEE-EEEEEcCccccccccCCCEEEEEEEeCCChH-HHHHHHH
Confidence 3679999999999999999999887654433322111100 0010 112357899999954 4555555
Q ss_pred HHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEe
Q psy17315 312 LVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLV 391 (561)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~ 391 (561)
.+.+....++..+ ++.+.+.+..+..|+.. +.........|+++|+
T Consensus 82 ~~~~~~~~~i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piiiv~ 127 (180)
T cd04127 82 AFFRDAMGFLLIF----------------DLTNEQSFLNVRNWMSQ------------------LQTHAYCENPDIVLCG 127 (180)
T ss_pred HHhCCCCEEEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEE
Confidence 5444333222222 23334555544444332 1111111357899999
Q ss_pred cCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 392 NLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 392 NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
||+|. ........+++.+++... +.+++++||++|.|++++.+...+
T Consensus 128 nK~Dl--~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 128 NKADL--EDQRQVSEEQAKALADKY--GIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred eCccc--hhcCccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99954 322222334555565554 578999999999999888655443
No 215
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.13 E-value=1.1e-10 Score=108.33 Aligned_cols=154 Identities=13% Similarity=0.151 Sum_probs=84.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+||++|++.+....+... +.++.+. ... .+... ...+.+|||+|.+ .+..+...+.++....+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~-~~~t~~~--~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~~d~~i 77 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIED--SYRKQVEVDGQQCMLEILDTAGTE-QFTAMRDLYMKNGQGFV 77 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcchh--eEEEEEEECCEEEEEEEEECCCcc-cchhHHHHHHhhCCEEE
Confidence 4689999999999999999987654322 2222221 111 22222 2346789999954 35555555544433222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ...+...+..+..+... +.........|+++|+||+|.. ..
T Consensus 78 lv~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl~--~~ 121 (164)
T cd04175 78 LVY----------------SITAQSTFNDLQDLREQ------------------ILRVKDTEDVPMILVGNKCDLE--DE 121 (164)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECCcch--hc
Confidence 211 11111222222222221 1111111468999999999542 21
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+.+.++.+.. +.+++++||++|.|+.++.+..
T Consensus 122 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 122 RVVGKEQGQNLARQW--GCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred cEEcHHHHHHHHHHh--CCEEEEeeCCCCCCHHHHHHHH
Confidence 222223334444433 5789999999999998875544
No 216
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.13 E-value=7.7e-10 Score=104.63 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=89.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+||+++|.+|||||||++++.+........|........... ....+.+|||||...... +. ...++.+|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~----~~---~~~~~~a~ 74 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN----VR---PLCYPDSD 74 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh----cc---hhhcCCCC
Confidence 589999999999999999999765321111211111110011 123588999999743321 11 23468999
Q ss_pred EEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcCC---------CCCccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKMG---------PKKTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~~---------~~~~~~~~l~~l~ 238 (561)
++++|+|.+.++ .++++ ..+...+...... |+||+|+.+... ...-...+...+.
T Consensus 75 ~~ilvfdit~~~----------Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 75 AVLICFDISRPE----------TLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred EEEEEEECCChh----------hHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999876322 22332 3333333332222 899999864210 0011122233333
Q ss_pred hhcCCCcEEEEEccCCCC-HHHHHHHHHhh
Q psy17315 239 GRVGTNLKVGIVGVPNVG-KSTFFNVLTKR 267 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~G-ks~l~~~l~~~ 267 (561)
........+.+|+++|.| +..+|+.+.+.
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 333333568999999995 99999998773
No 217
>KOG0092|consensus
Probab=99.13 E-value=3.4e-11 Score=111.08 Aligned_cols=158 Identities=15% Similarity=0.249 Sum_probs=113.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|..++|||+|.-++....|.....+++....-. ..+... ...+.+|||+| ++++..+..+|++++..++.
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~t-ktv~~~~~~ikfeIWDTAG-QERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLT-KTVTVDDNTIKFEIWDTAG-QERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccccccccccEEEE-EEEEeCCcEEEEEEEEcCC-cccccccccceecCCcEEEE
Confidence 578999999999999999999998877655555432100 011111 23577999999 55699999999999887766
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +|++.+.+.....|+.+ |..... .+.-+-+|.||+ |+....
T Consensus 84 vY----------------Dit~~~SF~~aK~Wvke------------------L~~~~~-~~~vialvGNK~--DL~~~R 126 (200)
T KOG0092|consen 84 VY----------------DITDEESFEKAKNWVKE------------------LQRQAS-PNIVIALVGNKA--DLLERR 126 (200)
T ss_pred EE----------------ecccHHHHHHHHHHHHH------------------HHhhCC-CCeEEEEecchh--hhhhcc
Confidence 66 67888888888887765 222211 122344599999 555445
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....++...+++.. +..++.+|||++.|++++...+.+.
T Consensus 127 ~V~~~ea~~yAe~~--gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 127 EVEFEEAQAYAESQ--GLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred cccHHHHHHHHHhc--CCEEEEEecccccCHHHHHHHHHHh
Confidence 66678888888875 7889999999999998876555443
No 218
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.13 E-value=7.9e-12 Score=130.40 Aligned_cols=58 Identities=29% Similarity=0.409 Sum_probs=42.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhh-hhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEI-INEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~-~~~el~l~Dt~Gi 302 (561)
..+.+++.|.+|+|||+|+|.+++..+...+.++ .|.||.. .+.+ .+..+.+|||+|+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~--tT~d~~~~~i~~~~~~~i~l~DT~G~ 247 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLF--ATLDPTTRRLDLPDGGEVLLTDTVGF 247 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCc--cccCCEEEEEEeCCCceEEEEecCcc
Confidence 4488999999999999999999997533333332 3346653 3344 2457899999998
No 219
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.12 E-value=1.9e-10 Score=107.10 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=90.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|.+|+||++|++.+.+..+... ++++.|..-....+.. ....+.+|||+|.+ .+..+...+.++...++.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD-CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE-RFRAVTRSYYRGAAGALM 80 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCcccceeEEEEEEEECCEEEEEEEEECCCcH-HHHHHHHHHhcCCCEEEE
Confidence 4689999999999999999998865432 2222221000011112 22357899999954 355544444443333222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..|+.+ +.... ....|+++|+||+|. ....
T Consensus 81 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~iiiv~nK~Dl--~~~~ 123 (166)
T cd04122 81 VY----------------DITRRSTYNHLSSWLTD------------------ARNLT-NPNTVIFLIGNKADL--EAQR 123 (166)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhC-CCCCeEEEEEECccc--cccc
Confidence 22 23333444444444332 11111 135799999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+++... +.+++.+||++|.|+.++.....
T Consensus 124 ~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 124 DVTYEEAKQFADEN--GLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred CcCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHH
Confidence 23345555666554 57899999999999888755443
No 220
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.12 E-value=6.9e-11 Score=122.44 Aligned_cols=164 Identities=18% Similarity=0.252 Sum_probs=92.6
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hh-hhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EI-INEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
+..-..|.++|.+|+|||||++.|++..+..+.++++ |.+|.... .+ ...++.+|||||+.+....- .
T Consensus 155 lk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfT--T~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~--------~ 224 (335)
T PRK12299 155 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT--TLHPNLGVVRVDDYKSFVIADIPGLIEGASEG--------A 224 (335)
T ss_pred EcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCc--eeCceEEEEEeCCCcEEEEEeCCCccCCCCcc--------c
Confidence 3455679999999999999999999987766666653 45676653 23 23469999999984311100 0
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH----HHhhh-hccCCceEEEecC
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH----LNKLN-LLTAKTQIYLVNL 393 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~----l~~~~-~l~~kP~iiv~NK 393 (561)
..-..++ +++++++++++|+|.... . +.++.+. |..+. .+..+|+++|+||
T Consensus 225 gLg~~fl--------------rhie~a~vlI~ViD~s~~---------~-s~e~~~~~~~EL~~~~~~L~~kp~IIV~NK 280 (335)
T PRK12299 225 GLGHRFL--------------KHIERTRLLLHLVDIEAV---------D-PVEDYKTIRNELEKYSPELADKPRILVLNK 280 (335)
T ss_pred cHHHHHH--------------HHhhhcCEEEEEEcCCCC---------C-CHHHHHHHHHHHHHhhhhcccCCeEEEEEC
Confidence 0001111 122333444444442111 0 1111111 11111 1247999999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
+|. ........+.++.++... +.+++++||+++.|+++|.+...+
T Consensus 281 iDL--~~~~~~~~~~~~~~~~~~--~~~i~~iSAktg~GI~eL~~~L~~ 325 (335)
T PRK12299 281 IDL--LDEEEEREKRAALELAAL--GGPVFLISAVTGEGLDELLRALWE 325 (335)
T ss_pred ccc--CCchhHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 954 321111112233333322 467999999999999988665544
No 221
>KOG0073|consensus
Probab=99.12 E-value=4.3e-10 Score=100.94 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=100.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+.++|.++|+.|+||||+++.|.+.. -.+++.-|.-.... .....++.++|..|....+ ..+-++...+|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl--~~~~~~L~iwDvGGq~~lr-------~~W~nYfestd 85 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTL--EYKGYTLNIWDVGGQKTLR-------SYWKNYFESTD 85 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEE--EecceEEEEEEcCCcchhH-------HHHHHhhhccC
Confidence 36899999999999999999999987 45565555544322 3345689999999976433 34556678899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCcc-HHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTD-EGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~-~~~l~~l~~~~~~~~~ 246 (561)
++++|+|++++.. ..+-...+.+-+.+-. .+ ++||.|........+-. .-.++.+. ....++.
T Consensus 86 glIwvvDssD~~r---------~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~-ks~~~~l 155 (185)
T KOG0073|consen 86 GLIWVVDSSDRMR---------MQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA-KSHHWRL 155 (185)
T ss_pred eEEEEEECchHHH---------HHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc-cccCceE
Confidence 9999999874332 2222222222222211 11 89999998443322111 11122222 2235678
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+||.+|.|.-.-+.|++...
T Consensus 156 ~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 156 VKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred EEEeccccccHHHHHHHHHHHH
Confidence 9999999998888888887764
No 222
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.12 E-value=1.9e-10 Score=106.18 Aligned_cols=158 Identities=14% Similarity=0.084 Sum_probs=85.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+|||+|++.++...+.....+.+.........+......+.+|||||... +..+.....+....++..+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~i~v~- 79 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED-YAAIRDNYHRSGEGFLLVF- 79 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhh-hhHHHHHHhhcCCEEEEEE-
Confidence 68999999999999999999876543322211111100001111224588999999543 4444444333322221111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
.+...+.+..+..+... +........+|+++|+||+|. .......
T Consensus 80 ---------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piiiv~NK~D~--~~~~~~~ 124 (164)
T cd04139 80 ---------------SITDMESFTATAEFREQ------------------ILRVKDDDNVPLLLVGNKCDL--EDKRQVS 124 (164)
T ss_pred ---------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEEcccc--ccccccC
Confidence 12222333323222221 111111147999999999954 3212223
Q ss_pred HHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 406 LPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 406 ~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....+..... +.+++++||+++.|+.++.+...+
T Consensus 125 ~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 125 SEEAANLARQW--GVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred HHHHHHHHHHh--CCeEEEeeCCCCCCHHHHHHHHHH
Confidence 33344444433 578999999999999998665543
No 223
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.12 E-value=2e-10 Score=106.79 Aligned_cols=156 Identities=16% Similarity=0.244 Sum_probs=89.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.++|.+|+|||+|++.+....+.....+.. |..-....+... ...+.+|||||.++ +..+...+.+....++.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI-GVDFKIRTIELDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGIII 80 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-ceeEEEEEEEECCEEEEEEEEECCCcHh-HHHHHHHHhCcCCEEEE
Confidence 478999999999999999999876654332221 211011112222 23578999999543 44444444333322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +..+.+.+..+..++.. +.... ....|+++|+||+|. ....
T Consensus 81 v~----------------d~~~~~s~~~l~~~~~~------------------~~~~~-~~~~~~iiv~nK~Dl--~~~~ 123 (166)
T cd01869 81 VY----------------DVTDQESFNNVKQWLQE------------------IDRYA-SENVNKLLVGNKCDL--TDKR 123 (166)
T ss_pred EE----------------ECcCHHHHHhHHHHHHH------------------HHHhC-CCCCcEEEEEEChhc--cccc
Confidence 11 12223344434333332 21111 136899999999954 2222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+...++.... +.+++++||++|.|+.++.+...
T Consensus 124 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 124 VVDYSEAQEFADEL--GIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred CCCHHHHHHHHHHc--CCeEEEEECCCCcCHHHHHHHHH
Confidence 22334455555543 67899999999999988855443
No 224
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.12 E-value=2.1e-10 Score=106.69 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=89.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|.+|+|||+|++.+.+..+.....+++ |..-....+.. ....+.+|||+|.++ +..+...+.++...++.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVFRNDKRVKLQIWDTAGQER-YRTITTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeEEEEEEEEECCEEEEEEEEECCChHH-HHHHHHHHccCCcEEEE
Confidence 468999999999999999999987654443332 21101112211 124688999999644 44444444333322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +..+.+.+..+.+|+.. +..... ...|+++|+||+|. ....
T Consensus 80 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piivv~nK~Dl--~~~~ 122 (165)
T cd01865 80 MY----------------DITNEESFNAVQDWSTQ------------------IKTYSW-DNAQVILVGNKCDM--EDER 122 (165)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhCC-CCCCEEEEEECccc--Cccc
Confidence 11 12222344444443322 221111 36899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+...++.... +.+++++||+++.|+.+|.+...
T Consensus 123 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 123 VVSSERGRQLADQL--GFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ccCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHH
Confidence 22234444444433 56899999999999988865543
No 225
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.12 E-value=2.1e-10 Score=109.65 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=89.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc--cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV--RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~--~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+|||+|++.+....+....+.++.+..-.. ..+......+.+|||||- +++..+...+.+....++..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ-ERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc-HHHHHhhHHHccCCCEEEEE
Confidence 588999999999999999998876544333322211010 111112246889999994 44544444433222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..|+.. +..... ...|+++|+||+|. .....
T Consensus 81 ~----------------D~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piiiv~NK~Dl--~~~~~ 123 (191)
T cd04112 81 Y----------------DITNKASFDNIRAWLTE------------------IKEYAQ-EDVVIMLLGNKADM--SGERV 123 (191)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhCC-CCCcEEEEEEcccc--hhccc
Confidence 1 12222333333333222 222221 36899999999954 22122
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
...+...++.... +.+++++||++|.|+.++.+...+...
T Consensus 124 ~~~~~~~~l~~~~--~~~~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 124 VKREDGERLAKEY--GVPFMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred cCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2223444444443 568999999999999998766655443
No 226
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.11 E-value=1.2e-10 Score=108.33 Aligned_cols=156 Identities=13% Similarity=0.163 Sum_probs=86.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|++++.+..|.....+..+.+.............+.+|||+|.++ +..+...+.+.....+..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQ-FPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCc-chHHHHHHhhcCCEEEEEE
Confidence 468999999999999999999887655444433222211111112234678999999643 4444444433332222111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh--hccCCceEEEecCChhhhhhhc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN--LLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~--~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+.+...+..+..+... +.... .....|+++|+||+|. ....
T Consensus 81 ----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~~piilv~nK~Dl--~~~~ 124 (165)
T cd04140 81 ----------------SVTSKQSLEELKPIYEL------------------ICEIKGNNIEKIPIMLVGNKCDE--SHKR 124 (165)
T ss_pred ----------------ECCCHHHHHHHHHHHHH------------------HHHHhcCCCCCCCEEEEEECccc--cccC
Confidence 12222333333332211 11111 0136899999999954 2211
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
....+....+.... +.+++++||++|.|+.++.+.
T Consensus 125 ~v~~~~~~~~~~~~--~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 125 EVSSNEGAACATEW--NCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred eecHHHHHHHHHHh--CCcEEEeecCCCCCHHHHHHH
Confidence 22222333343333 567899999999998887544
No 227
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.11 E-value=4.2e-12 Score=126.92 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=102.9
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..-..+.++|.||+|||||++.++...+..++|+|+ |.-|..++.. .+..+++.|.||+.+.... -.-
T Consensus 157 KllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFT--TL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~--------G~G 226 (369)
T COG0536 157 KLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFT--TLVPNLGVVRVDGGESFVVADIPGLIEGASE--------GVG 226 (369)
T ss_pred eeecccccccCCCCcHHHHHHHHhhcCCcccCCccc--cccCcccEEEecCCCcEEEecCccccccccc--------CCC
Confidence 344568999999999999999999999999999994 4456554322 2345889999998442110 111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHH----hh-hhccCCceEEEecCC
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLN----KL-NLLTAKTQIYLVNLS 394 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~----~~-~~l~~kP~iiv~NK~ 394 (561)
.-.++ ++||+++.++.|++|.... +. ..+.++.+.|. .+ ..+..||.++|+||+
T Consensus 227 LG~~F--------------LrHIERt~vL~hviD~s~~------~~-~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKi 285 (369)
T COG0536 227 LGLRF--------------LRHIERTRVLLHVIDLSPI------DG-RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKI 285 (369)
T ss_pred ccHHH--------------HHHHHhhheeEEEEecCcc------cC-CCHHHHHHHHHHHHHHhhHHhccCceEEEEecc
Confidence 11222 3578888888888775332 10 11223332222 11 234689999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 395 D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
|... ..+.++.+.+.+.........++|||.++.|++.|.....
T Consensus 286 D~~~---~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~ 329 (369)
T COG0536 286 DLPL---DEEELEELKKALAEALGWEVFYLISALTREGLDELLRALA 329 (369)
T ss_pred CCCc---CHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHH
Confidence 6322 2334455555444322122233499999999988865443
No 228
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.11 E-value=1.5e-10 Score=107.24 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=84.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+||++|++++.+..+.....+.+ + +... .+.. ....+.+|||||.++ +..+...+.+....++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~~~~~~~~~~~~~i~ 77 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTI-E--DSYRKQIEIDGEVCLLDILDTAGQEE-FSAMRDQYMRTGEGFLL 77 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCch-h--hhEEEEEEECCEEEEEEEEECCCccc-chHHHHHHHhhCCEEEE
Confidence 68999999999999999999876543322211 1 1111 1111 123577899999543 44444433332222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..+... +........+|+++|+||+|. ....
T Consensus 78 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~pii~v~nK~Dl--~~~~ 121 (164)
T smart00173 78 VY----------------SITDRQSFEEIKKFREQ------------------ILRVKDRDDVPIVLVGNKCDL--ESER 121 (164)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--cccc
Confidence 11 11222333322222111 111111136899999999954 2212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+.+.++.+.. +.+++++||+++.|+.++.+...
T Consensus 122 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 122 VVSTEEGKELARQW--GCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred eEcHHHHHHHHHHc--CCEEEEeecCCCCCHHHHHHHHH
Confidence 22233444444443 57899999999999988865543
No 229
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.11 E-value=5.3e-10 Score=123.79 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=95.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCC-eEEEEeCCCcccCCccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPA-FLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~-~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.+++.|+++|.+|+|||||+++|++........+|+|.+..... ..+. .+.+|||||...... .....++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~-------~r~rga~ 157 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS-------MRARGAK 157 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhh-------HHHhhhc
Confidence 46679999999999999999999987755566778887653321 1123 799999999754331 1123467
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh-------
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR------- 240 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~------- 240 (561)
.+|++++|+|+.... .....+.+. .+.....+ +.||+|+... ........+..
T Consensus 158 ~aDiaILVVda~dgv-------~~qT~e~i~----~~~~~~vPiIVviNKiDl~~~------~~e~v~~~L~~~g~~~~~ 220 (587)
T TIGR00487 158 VTDIVVLVVAADDGV-------MPQTIEAIS----HAKAANVPIIVAINKIDKPEA------NPDRVKQELSEYGLVPED 220 (587)
T ss_pred cCCEEEEEEECCCCC-------CHhHHHHHH----HHHHcCCCEEEEEECcccccC------CHHHHHHHHHHhhhhHHh
Confidence 889999999875311 011111111 12222223 8999999642 11111111111
Q ss_pred c-CCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 241 V-GTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 241 ~-~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
. ...+.+.+||++|.|++.|++++..
T Consensus 221 ~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 221 WGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cCCCceEEEEECCCCCChHHHHHhhhh
Confidence 1 1235799999999999999999865
No 230
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.10 E-value=1.7e-11 Score=129.41 Aligned_cols=166 Identities=16% Similarity=0.143 Sum_probs=91.0
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh-hhh-HhhhcccHHHHHHHHHH---HHHHHhhC
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE-IIN-EELRLKDVEHIEKEINK---IEKLVQRG 316 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~-~~~-~el~l~Dt~Gi~~~~~~---l~~~~~~~ 316 (561)
+.-..|+++|++|+|||||+|.|++..+..+.+++ .|.+|...+. ..+ ..++|+||||+.+.... +...+.
T Consensus 157 k~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~--TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l-- 232 (390)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPF--TTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFL-- 232 (390)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhCCcccccCCCC--CccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHH--
Confidence 34456999999999999999999988654444443 2346666542 333 35999999998542111 111111
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh----ccCCceEEEec
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL----LTAKTQIYLVN 392 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~----l~~kP~iiv~N 392 (561)
+++++++++++|++... .......+....+++.+.. +..+|+|+|+|
T Consensus 233 -----------------------~~i~radvlL~VVD~s~------~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlN 283 (390)
T PRK12298 233 -----------------------KHLERCRVLLHLIDIAP------IDGSDPVENARIIINELEKYSPKLAEKPRWLVFN 283 (390)
T ss_pred -----------------------HHHHhCCEEEEEeccCc------ccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEe
Confidence 01233344444443210 0000011111122222211 24699999999
Q ss_pred CChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 393 LSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 393 K~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
|+|. .. .....+.+.++.+......+++++||+++.|+.+|.+...+.
T Consensus 284 KiDl--~~-~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~ 331 (390)
T PRK12298 284 KIDL--LD-EEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTF 331 (390)
T ss_pred CCcc--CC-hHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHH
Confidence 9954 32 222333344433332112368999999999999886655443
No 231
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.10 E-value=1.4e-10 Score=124.78 Aligned_cols=149 Identities=18% Similarity=0.115 Sum_probs=87.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcc-------------------------------cCCCcccccCcccc--ccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAA-------------------------------ENFPFCTIDPNENN--KVPA 141 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~-------------------------------~~~~~~T~~~~~~~--~~~~ 141 (561)
..++|+++|.+|+|||||+|+|+.....+ ...+|+|++..... ....
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 44789999999999999999998543110 11578888876542 2345
Q ss_pred eEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhcc
Q psy17315 142 FLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAK 217 (561)
Q Consensus 142 ~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK 217 (561)
.+.++||||..... ......++.+|++++|+|++.. .. ......+.+. .+..+.. + ++||
T Consensus 85 ~i~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvDa~~~-~~----~~~~~~~~~~----~~~~~~~~~iivviNK 148 (425)
T PRK12317 85 YFTIVDCPGHRDFV-------KNMITGASQADAAVLVVAADDA-GG----VMPQTREHVF----LARTLGINQLIVAINK 148 (425)
T ss_pred EEEEEECCCcccch-------hhHhhchhcCCEEEEEEEcccC-CC----CCcchHHHHH----HHHHcCCCeEEEEEEc
Confidence 79999999963221 2233446889999999998631 00 0000111111 1222222 2 8999
Q ss_pred ccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHHH
Q psy17315 218 ADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKST 259 (561)
Q Consensus 218 ~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks~ 259 (561)
+|+....... .....++..+..... ..+.+.+||.+|.|+..
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 9997411000 001122333333222 34689999999999874
No 232
>PRK00089 era GTPase Era; Reviewed
Probab=99.10 E-value=1.2e-11 Score=126.43 Aligned_cols=161 Identities=22% Similarity=0.244 Sum_probs=91.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..|++.|.+|+|||+|+|.+++.. .+.+++.++|+ +....+.. .+.++.++||||+.+....+...+.......
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~--~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~-- 81 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQK--ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS-- 81 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCc--eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH--
Confidence 458999999999999999999874 34445545554 23333322 2357999999998543333222211000000
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
+..+|++..+++.. ..+...+...+..+.. ..+|+++|+||+| +....
T Consensus 82 -------------------~~~~D~il~vvd~~----------~~~~~~~~~i~~~l~~-~~~pvilVlNKiD--l~~~~ 129 (292)
T PRK00089 82 -------------------LKDVDLVLFVVDAD----------EKIGPGDEFILEKLKK-VKTPVILVLNKID--LVKDK 129 (292)
T ss_pred -------------------HhcCCEEEEEEeCC----------CCCChhHHHHHHHHhh-cCCCEEEEEECCc--CCCCH
Confidence 01113333222210 0233344444443332 3689999999995 43212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+.++.+. .++.+++++||+++.|+.+|.+....
T Consensus 130 ~~l~~~~~~l~~~-~~~~~i~~iSA~~~~gv~~L~~~L~~ 168 (292)
T PRK00089 130 EELLPLLEELSEL-MDFAEIVPISALKGDNVDELLDVIAK 168 (292)
T ss_pred HHHHHHHHHHHhh-CCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 2233344444332 23678999999999999988665544
No 233
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.10 E-value=2.1e-10 Score=109.56 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=87.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+||++|++.+....|.....+. .+ +.. ..+...+ ..+.+|||+|.+ ++..+...+.+....++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t-~~--~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~ad~~il 76 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPT-IE--DSYRKQVVVDGQPCMLEVLDTAGQE-EYTALRDQWIREGEGFIL 76 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCc-hH--hhEEEEEEECCEEEEEEEEECCCch-hhHHHHHHHHHhCCEEEE
Confidence 3789999999999999999987664432221 11 111 1111222 347889999954 355555555444333322
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +....... ....|+++|+||+|. ....
T Consensus 77 v~----------------d~~~~~s~~~~~~~~~~---------------i~~~~~~~-~~~~piilvgNK~Dl--~~~~ 122 (190)
T cd04144 77 VY----------------SITSRSTFERVERFREQ---------------IQRVKDES-AADVPIMIVGNKCDK--VYER 122 (190)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH---------------HHHHhccc-CCCCCEEEEEEChhc--cccC
Confidence 22 22223333333333322 00011000 136899999999954 2212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
........++.... +.+++++||++|.|+.++.+...+.+
T Consensus 123 ~v~~~~~~~~~~~~--~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 123 EVSTEEGAALARRL--GCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred ccCHHHHHHHHHHh--CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 22223333444433 56899999999999998866655443
No 234
>KOG0084|consensus
Probab=99.09 E-value=2e-10 Score=106.51 Aligned_cols=158 Identities=16% Similarity=0.249 Sum_probs=112.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
.-.+|.+.|..|+||+-|+.++....|.....+++.-.. ..+.++..+ ..+++|||+| ++++..+...+++++..+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf-~~rt~e~~gk~iKlQIWDTAG-QERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDF-KIRTVELDGKTIKLQIWDTAG-QERFRTITSSYYRGAHGI 85 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEE-EEEEeeecceEEEEEeeeccc-cHHHhhhhHhhccCCCeE
Confidence 346899999999999999999998877766665432111 112333332 3688999999 678888888999998888
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +|+..+....+.+|+.+ +..+.. ...|.++|.||+ |+.+
T Consensus 86 i~vy----------------DiT~~~SF~~v~~Wi~E------------------i~~~~~-~~v~~lLVGNK~--Dl~~ 128 (205)
T KOG0084|consen 86 IFVY----------------DITKQESFNNVKRWIQE------------------IDRYAS-ENVPKLLVGNKC--DLTE 128 (205)
T ss_pred EEEE----------------EcccHHHhhhHHHHHHH------------------hhhhcc-CCCCeEEEeecc--ccHh
Confidence 7766 67777888888888776 122222 357999999999 4444
Q ss_pred hccchHHHHHHHHHhcCCCCe-EEeechhhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGAT-IIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~-vi~iSA~~~~gl~~L~~~~~ 441 (561)
......+..++++... +.+ ++++||+.+.++++......
T Consensus 129 ~~~v~~~~a~~fa~~~--~~~~f~ETSAK~~~NVe~~F~~la 168 (205)
T KOG0084|consen 129 KRVVSTEEAQEFADEL--GIPIFLETSAKDSTNVEDAFLTLA 168 (205)
T ss_pred heecCHHHHHHHHHhc--CCcceeecccCCccCHHHHHHHHH
Confidence 3444455555666554 566 99999999998766544433
No 235
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.09 E-value=3.6e-10 Score=104.87 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=87.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|.+|+|||+|++.+.+..+.....+.+ |. +.. ..+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~~i 80 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTI-GV-EFATRSIQIDGKTIKAQIWDTAGQER-YRAITSAYYRGAVGAL 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-ce-EEEEEEEEECCEEEEEEEEeCCChHH-HHHHHHHHHCCCCEEE
Confidence 579999999999999999999886654443332 21 111 1222222 3578999999643 4444444433222121
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ +..+...+..+..|+.. +..... .+.|+++|+||+|. ...
T Consensus 81 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~pi~vv~nK~Dl--~~~ 123 (165)
T cd01868 81 LVY----------------DITKKQTFENVERWLKE------------------LRDHAD-SNIVIMLVGNKSDL--RHL 123 (165)
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEECccc--ccc
Confidence 111 11222333333333221 111111 35899999999954 222
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....++..+++... +.+++++||++|.|+.++.+..
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 124 RAVPTEEAKAFAEKN--GLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred ccCCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHH
Confidence 222344455555443 5789999999999988875543
No 236
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.09 E-value=1.6e-10 Score=107.04 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=84.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+||++|++.+....+.....+.+ +.. ....+...+ ..+.+|||+|.++ +..+...+.+....++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDF-YRKEIEVDSSPSVLEILDTAGTEQ-FASMRDLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch-hhe-EEEEEEECCEEEEEEEEECCCccc-ccchHHHHHhhCCEEEE
Confidence 368999999999999999998876654332221 111 001122222 3477899999543 44455444433332222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..+... +........+|+++|+||+|.. ...
T Consensus 79 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piviv~nK~Dl~--~~~ 122 (163)
T cd04176 79 VY----------------SLVNQQTFQDIKPMRDQ------------------IVRVKGYEKVPIILVGNKVDLE--SER 122 (163)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccch--hcC
Confidence 11 12222333333333222 1111111478999999999642 211
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.........+.... +.+++++||++|.|+.++.+.
T Consensus 123 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04176 123 EVSSAEGRALAEEW--GCPFMETSAKSKTMVNELFAE 157 (163)
T ss_pred ccCHHHHHHHHHHh--CCEEEEecCCCCCCHHHHHHH
Confidence 21222233333332 568999999999998877543
No 237
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.09 E-value=3.7e-10 Score=106.13 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=90.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+||++|++.+....|.....+.+ +.. -...+...+ ..+.+|||+|.. .+..+...+.+....++.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~Dt~G~~-~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI-EDA-YKQQARIDNEPALLDILDTAGQA-EFTAMRDQYMRCGEGFII 79 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcc-cce-EEEEEEECCEEEEEEEEeCCCch-hhHHHhHHHhhcCCEEEE
Confidence 478999999999999999998876643322221 110 001112222 357899999954 455665555444333222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+.++... +.........|+++|+||+|... ..
T Consensus 80 v~----------------d~~~~~Sf~~~~~~~~~------------------i~~~~~~~~~piilvgNK~Dl~~--~~ 123 (172)
T cd04141 80 CY----------------SVTDRHSFQEASEFKKL------------------ITRVRLTEDIPLVLVGNKVDLES--QR 123 (172)
T ss_pred EE----------------ECCchhHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEEChhhhh--cC
Confidence 22 22333444433332211 22221114689999999996422 11
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
....++..++++.. +.+++++||++|.|++++.+......
T Consensus 124 ~v~~~~~~~~a~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 124 QVTTEEGRNLAREF--NCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ccCHHHHHHHHHHh--CCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 22223344454443 67899999999999988866554443
No 238
>PTZ00369 Ras-like protein; Provisional
Probab=99.09 E-value=2.4e-10 Score=109.07 Aligned_cols=165 Identities=15% Similarity=0.090 Sum_probs=92.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..++.+.|.+|+||++|++.+.+..+.....+....+......+......+.+|||+|.+ .+..+...+.+....++..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQE-EYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCc-cchhhHHHHhhcCCEEEEE
Confidence 367999999999999999999987654332222111110000111122357789999954 3555555554433322222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..+... +.........|+++|+||+|. .....
T Consensus 84 ~----------------D~s~~~s~~~~~~~~~~------------------i~~~~~~~~~piiiv~nK~Dl--~~~~~ 127 (189)
T PTZ00369 84 Y----------------SITSRSSFEEIASFREQ------------------ILRVKDKDRVPMILVGNKCDL--DSERQ 127 (189)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--ccccc
Confidence 2 22333444444333222 111111136799999999954 22111
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
...+...++.... +.+++.+||++|.|+.++.+...+...+.
T Consensus 128 i~~~~~~~~~~~~--~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 128 VSTGEGQELAKSF--GIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred cCHHHHHHHHHHh--CCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 1222333344333 56899999999999999877766555444
No 239
>KOG0078|consensus
Probab=99.08 E-value=2.7e-10 Score=107.08 Aligned_cols=162 Identities=14% Similarity=0.199 Sum_probs=114.3
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
+...++.++|.+|+||+.++..+.+..|.....+... +|-. +.+.. ....+++|||+| ++++..+...|.+++.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiG--IDFk~kti~l~g~~i~lQiWDtaG-Qerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIG--IDFKIKTIELDGKKIKLQIWDTAG-QERFRTITTAYYRGAM 86 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEE--EEEEEEEEEeCCeEEEEEEEEccc-chhHHHHHHHHHhhcC
Confidence 3456899999999999999999999988766654431 1111 12222 224588999999 6778888888888887
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
.++-.+ .+++....+++..|+.. +.+... .+.|.++|.||+|...
T Consensus 87 gi~Lvy----------------Ditne~Sfeni~~W~~~------------------I~e~a~-~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 87 GILLVY----------------DITNEKSFENIRNWIKN------------------IDEHAS-DDVVKILVGNKCDLEE 131 (207)
T ss_pred eeEEEE----------------EccchHHHHHHHHHHHH------------------HHhhCC-CCCcEEEeeccccccc
Confidence 765555 56777888888888765 222322 4789999999995433
Q ss_pred hhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 399 IKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......++-++++.+. +.+++.+||++|.++.+..-..+.+.+
T Consensus 132 --~R~V~~e~ge~lA~e~--G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 132 --KRQVSKERGEALAREY--GIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred --cccccHHHHHHHHHHh--CCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 2344455566666665 899999999999999887555544443
No 240
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.08 E-value=1.5e-09 Score=100.65 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=85.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCc-cccc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN-ENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~-~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||++++........ ++ .|.... .... ....+.++||+|.... ...+.+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~------------~~~~~~ 66 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPDA------------QFASWV 66 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC-CC-CCccceEEEEEECCEEEEEEEEECCCCCch------------hHHhcC
Confidence 4799999999999999998875542111 11 011100 0011 1235889999998421 124678
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--c--h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--R--S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~--~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.++ .+.++..+..++.... . + |+||+|+....... ....+...+........
T Consensus 67 ~~~ilv~d~~~~~----------sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~-v~~~~~~~~~~~~~~~~ 135 (158)
T cd04103 67 DAVIFVFSLENEA----------SFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRV-IDDARARQLCADMKRCS 135 (158)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcc-cCHHHHHHHHHHhCCCc
Confidence 9999999876433 2333332333333222 1 1 89999985321111 11222233333333457
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+||++|.|+..+|..+.+.
T Consensus 136 ~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 136 YYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 8899999999999999998754
No 241
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.08 E-value=3.6e-10 Score=109.07 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=97.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.|.+.|..|+||++|+.++....|.....+.+.-... ...+...+ ..+.+|||+|. +++..+...+.++...++..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~-~~~i~~~~~~v~l~iwDtaGq-e~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFK-IKTVELRGKKIRLQIWDTAGQ-ERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEE-EEEEEECCEEEEEEEEeCCCc-hhhHHHHHHHhcCCCEEEEE
Confidence 4789999999999999999988775433322210110 01122222 46789999995 45666766666655544333
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++++.+.+..+..|+.. +.... ....|+++|+||+|. .....
T Consensus 80 f----------------Dvtd~~Sf~~l~~w~~~------------------i~~~~-~~~~piilVgNK~DL--~~~~~ 122 (202)
T cd04120 80 Y----------------DITKKETFDDLPKWMKM------------------IDKYA-SEDAELLLVGNKLDC--ETDRE 122 (202)
T ss_pred E----------------ECcCHHHHHHHHHHHHH------------------HHHhC-CCCCcEEEEEECccc--ccccc
Confidence 3 34555665555444332 22221 146899999999964 22122
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
...+...+++... .+..++.+||++|.|+.++.+.....+.+
T Consensus 123 v~~~~~~~~a~~~-~~~~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 123 ISRQQGEKFAQQI-TGMRFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred cCHHHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 2233444444432 14678999999999999987766555443
No 242
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.08 E-value=4.2e-10 Score=108.23 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=83.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCc---ccccCcccc-ccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPF---CTIDPNENN-KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~---~T~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
+++|+++|.+|||||||+|+|++... ......+ +|....... .....+.++||||+.........+... ..+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~--~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEE--MKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHH--hCc
Confidence 36899999999999999999998542 1111112 233221110 112468999999997533221111111 124
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcCCCC----C-ccHHHHHHHhhh
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKMGPK----K-TDEGEKKMLLGR 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~~~~----~-~~~~~l~~l~~~ 240 (561)
..+|++++|.|... ...+ .+.+.+.....+ |.||+|+....... . .....+..+...
T Consensus 79 ~~~d~~l~v~~~~~--------------~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~ 144 (197)
T cd04104 79 SEYDFFIIISSTRF--------------SSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN 144 (197)
T ss_pred cCcCEEEEEeCCCC--------------CHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHH
Confidence 67899999875421 1111 122233444333 99999995321110 0 011112222111
Q ss_pred ---------cCCCcEEEEEcc--CCCCHHHHHHHHHhhc
Q psy17315 241 ---------VGTNLKVGIVGV--PNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ---------~~~~~~i~isg~--~~~Gks~l~~~l~~~~ 268 (561)
......+.+|+. .+.|...|..++...+
T Consensus 145 ~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 145 CLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred HHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 123456677776 4567777777666654
No 243
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.08 E-value=1.7e-09 Score=103.42 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=91.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcc-ccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNE-NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.+|||||||++++...... ..+..|....... .......+.+|||||...... +. -..++++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~----l~---~~~~~~a 75 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR----LR---TLSYPQT 75 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh----hh---hhhccCC
Confidence 368999999999999999999875521 1121111110000 001123588999999854332 11 2246889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcc--h---hhccccccCcCCC---------CCccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRR--S---VDAKADSKKKMGP---------KKTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~--~---v~NK~D~~~~~~~---------~~~~~~~l~~l 237 (561)
|++++|+|.+.++ .++.+. .+...+..... + |+||+|+.+.... ......+...+
T Consensus 76 ~~~ilvydit~~~----------Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (191)
T cd01875 76 NVFIICFSIASPS----------SYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGAL 145 (191)
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 9999999876322 223332 22222222111 1 9999999643221 00111222223
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.........+.+||++|.|+..+++++.+..
T Consensus 146 a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 146 AKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred HHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 2233334678999999999999999999875
No 244
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.07 E-value=3.6e-10 Score=104.60 Aligned_cols=158 Identities=11% Similarity=0.111 Sum_probs=87.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc-ccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP-VRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp-~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
+|.+.|.+|+|||+|++.+++..+.....+.+.-.... ...+......+.+|||+|.++ ...+...+.+....++..+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-YLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH-HHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999987654333222111100 011112234678999999654 4444444433332222111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh----hccCCceEEEecCChhhhhh
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN----LLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~----~l~~kP~iiv~NK~D~d~~~ 400 (561)
+.++.+.+..+..|+.+ +.... .....|+++|+||+|. ..
T Consensus 81 ----------------D~~~~~s~~~~~~~~~~------------------~~~~~~~~~~~~~~piilv~nK~Dl--~~ 124 (168)
T cd04119 81 ----------------DVTDRQSFEALDSWLKE------------------MKQEGGPHGNMENIVVVVCANKIDL--TK 124 (168)
T ss_pred ----------------ECCCHHHHHhHHHHHHH------------------HHHhccccccCCCceEEEEEEchhc--cc
Confidence 22222333333333322 11111 1136899999999954 21
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+....++... +.+++++||+++.|+.++.+....
T Consensus 125 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 125 HRAVSEDEGRLWAESK--GFKYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred ccccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 1222334444455443 577999999999999888655433
No 245
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.07 E-value=1.8e-09 Score=106.19 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=91.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|-+|||||||++++.+........|.......... .....+.||||||...... + ....+++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~----~---~~~~~~~ 84 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDN----V---RPLCYSD 84 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHH----H---HHHHcCC
Confidence 3478999999999999999999876522111121111111001 1124689999999643221 1 1234689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhh-HHHHHHHHHHhcc--h---hhccccccCcCCC---------CCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRN-LKLLETRIRDLRR--S---VDAKADSKKKMGP---------KKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~--~---v~NK~D~~~~~~~---------~~~~~~~l~~ 236 (561)
||++++|+|.+..+ .++. +..+..++..... + |+||+|+....+. ......+...
T Consensus 85 ad~vIlVyDit~~~----------Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 85 SDAVLLCFDISRPE----------TVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred CcEEEEEEECCChH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 99999999876322 2222 2333333333222 1 8999998642110 0111223333
Q ss_pred HhhhcCCCcEEEEEccCCC-CHHHHHHHHHhhc
Q psy17315 237 LLGRVGTNLKVGIVGVPNV-GKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~-Gks~l~~~l~~~~ 268 (561)
+-........+.+|+++|. |+..+|..+....
T Consensus 155 ~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 155 LAKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 3333333346889999998 8999999988764
No 246
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.07 E-value=4e-10 Score=108.61 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=96.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh---hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII---NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
+|.+.|.+|+||++|++.+.+..+.....+++ | .|.. ..+... ...+.+|||+|. +.+..+...+.++...++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~-~-~d~~~~~v~~~~~~~~~l~l~Dt~G~-~~~~~~~~~~~~~a~~~i 78 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI-G-VDFALKVIEWDPNTVVRLQLWDIAGQ-ERFGGMTRVYYRGAVGAI 78 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-e-EEEEEEEEEECCCCEEEEEEEECCCc-hhhhhhHHHHhCCCCEEE
Confidence 68999999999999999999876543332221 2 1111 112222 245789999995 445555555554443332
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++++.+.+..+..|+.+ +............|+|+|+||+|. ...
T Consensus 79 lv~----------------D~t~~~s~~~~~~~~~~---------------i~~~~~~~~~~~~piilv~NK~Dl--~~~ 125 (201)
T cd04107 79 IVF----------------DVTRPSTFEAVLKWKAD---------------LDSKVTLPNGEPIPCLLLANKCDL--KKR 125 (201)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH---------------HHHhhcccCCCCCcEEEEEECCCc--ccc
Confidence 222 33444555555444432 000000111146899999999954 221
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
.....+++.++++.. ...+++++||++|.|+.++.+...+...+
T Consensus 126 ~~~~~~~~~~~~~~~-~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 126 LAKDGEQMDQFCKEN-GFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred cccCHHHHHHHHHHc-CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 233445666666654 12679999999999999987766555443
No 247
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.06 E-value=2e-09 Score=102.19 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=91.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCc-cccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPN-ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~-~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..+||+++|-++||||||++++...... ..+..+...... ........+.+|||+|...... +. ...+++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~----~~---~~~~~~ 76 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----VR---PLSYPD 76 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh----hh---hhhcCC
Confidence 3478999999999999999999876522 111111111000 0011123589999999743221 11 234689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcCC---------CCCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKMG---------PKKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~~---------~~~~~~~~l~~ 236 (561)
+|++++|+|.+.+ ..++.+ ..+...+...... |+||+|+.+..+ .......+...
T Consensus 77 ad~~ilvyDit~~----------~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 77 SDAVLICFDISRP----------ETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred CCEEEEEEECCCH----------HHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 9999999987632 233333 3333334332222 899999864211 00112222333
Q ss_pred HhhhcCCCcEEEEEccCCCC-HHHHHHHHHhh
Q psy17315 237 LLGRVGTNLKVGIVGVPNVG-KSTFFNVLTKR 267 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~G-ks~l~~~l~~~ 267 (561)
+.........+.+|+++|.| +..+|..+.+.
T Consensus 147 ~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 147 MAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 33333333578999999998 99999988764
No 248
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.06 E-value=5.6e-10 Score=99.95 Aligned_cols=146 Identities=18% Similarity=0.110 Sum_probs=85.8
Q ss_pred EEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc----cCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 101 ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
++|.+|+|||||+|+|.+..........+..+...... ....+.++||||....... ....++.+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSL-------RRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhH-------HHHHhcCCCEEE
Confidence 57999999999999999876421222111122222111 2457899999998643321 134458899999
Q ss_pred EEecccccchhhhccchhhHhhhHHHH----HHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLL----ETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
+|+|++... .......+ .........+ ++||+|......... ...............+.+
T Consensus 74 ~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 140 (157)
T cd00882 74 LVYDVTDRE----------SFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSE---EELAEQLAKELGVPYFET 140 (157)
T ss_pred EEEECcCHH----------HHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHH---HHHHHHHHhhcCCcEEEE
Confidence 999876311 11111111 0111111122 899999975432211 101222333455678999
Q ss_pred EccCCCCHHHHHHHHHh
Q psy17315 250 VGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~ 266 (561)
|+..+.|...++++|.+
T Consensus 141 s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 141 SAKTGENVEELFEELAE 157 (157)
T ss_pred ecCCCCChHHHHHHHhC
Confidence 99999999999998853
No 249
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.06 E-value=3e-10 Score=105.94 Aligned_cols=158 Identities=12% Similarity=0.103 Sum_probs=86.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.++|.+|+||++|++++.+..+.... .++.+.. ....+.. ....+.+|||||..+ +..+...+.+.....+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~-~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESY-DPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQ-FTAMRELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc-CCcchhe-EEEEEEECCEEEEEEEEeCCCccc-chhhhHHHHhhCCEEEE
Confidence 46899999999999999999987654332 2211111 1111111 224678999999543 44444444433322211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..+... +.......+.|+++++||+|. ....
T Consensus 79 v~----------------~~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piiiv~nK~D~--~~~~ 122 (168)
T cd04177 79 VY----------------SVTSEASLNELGELREQ------------------VLRIKDSDNVPMVLVGNKADL--EDDR 122 (168)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhhCCCCCCEEEEEEChhc--cccC
Confidence 11 12222344433333221 111111247899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....+...++.+.. ...+++++||+++.|+.++.++..+
T Consensus 123 ~~~~~~~~~~~~~~-~~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 123 QVSREDGVSLSQQW-GNVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred ccCHHHHHHHHHHc-CCceEEEeeCCCCCCHHHHHHHHHH
Confidence 22233333444433 1368999999999998887655443
No 250
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.05 E-value=5.9e-10 Score=103.53 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=86.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.++|.+|+|||+|++.+....+.....+.. +..-....+.+.+ ..+.+|||||. ..+..+.....+....++.
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~l~i~D~~G~-~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTI-GVDFTMKTLEIEGKRVKLQIWDTAGQ-ERFRTITQSYYRSANGAII 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCcc-ceEEEEEEEEECCEEEEEEEEECCCh-HHHHHHHHHHhccCCEEEE
Confidence 579999999999999999998765543322221 2100112232222 36889999995 3354444443332222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+...+..+..|+.. +.... ....|+++|+||+|. ....
T Consensus 82 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~p~ivv~nK~Dl--~~~~ 124 (165)
T cd01864 82 AY----------------DITRRSSFESVPHWIEE------------------VEKYG-ASNVVLLLIGNKCDL--EEQR 124 (165)
T ss_pred EE----------------ECcCHHHHHhHHHHHHH------------------HHHhC-CCCCcEEEEEECccc--cccc
Confidence 11 12222333333333322 11111 136899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+...++++.. ....++++||++|.|+.++.+..
T Consensus 125 ~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 125 EVLFEEACTLAEKN-GMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred ccCHHHHHHHHHHc-CCcEEEEEECCCCCCHHHHHHHH
Confidence 33344455555443 13468999999999988875544
No 251
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.05 E-value=6.2e-10 Score=106.30 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=100.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|..|+||++|+..+....+.... .++.|. .. ...+.. ....+.+|||+|. +++..+...+.++...+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~-~~t~~~~~~-~~~i~~~~~~~~l~iwDt~G~-~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPY-GYNMGIDYK-TTTILLDGRRVKLQLWDTSGQ-GRFCTIFRSYSRGAQGI 82 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCcceeEEE-EEEEEECCEEEEEEEEeCCCc-HHHHHHHHHHhcCCCEE
Confidence 468999999999999999999987654332 222121 10 011111 2246789999995 44666666665555444
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++++...+..+..|+.+ +.... ...|+|+|+||.|.. .
T Consensus 83 llVf----------------D~t~~~Sf~~~~~w~~~------------------i~~~~--~~~piilVGNK~DL~--~ 124 (189)
T cd04121 83 ILVY----------------DITNRWSFDGIDRWIKE------------------IDEHA--PGVPKILVGNRLHLA--F 124 (189)
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECccch--h
Confidence 3333 44555666666555544 11111 368999999999643 2
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
......++++++++.. +.+++.+||++|.|++++.+...+..
T Consensus 125 ~~~v~~~~~~~~a~~~--~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 125 KRQVATEQAQAYAERN--GMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred ccCCCHHHHHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 2233355666776655 67899999999999988866555443
No 252
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.05 E-value=7.1e-11 Score=127.43 Aligned_cols=155 Identities=24% Similarity=0.300 Sum_probs=91.2
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
....++.+.|.+|+|||+|+|.+++.. ...++..+||+ |... .+.+.+..+.+|||||+++..+.++....+..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~-- 288 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEE--RAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERS-- 288 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHH--
Confidence 466889999999999999999999873 33344455665 4432 23444567899999997542222222111000
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
+. .+..+|++..|++... ..+.++...+.. ...+|+++|+||+| +.
T Consensus 289 -----~~--------------~~~~aD~il~VvD~s~----------~~s~~~~~~l~~---~~~~piiiV~NK~D--L~ 334 (449)
T PRK05291 289 -----RE--------------AIEEADLVLLVLDASE----------PLTEEDDEILEE---LKDKPVIVVLNKAD--LT 334 (449)
T ss_pred -----HH--------------HHHhCCEEEEEecCCC----------CCChhHHHHHHh---cCCCCcEEEEEhhh--cc
Confidence 00 0122244444444211 122233444433 25799999999995 43
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.. .. .. .. .+.+++++||++|.|+++|.+...+.+
T Consensus 335 ~~-~~-~~------~~--~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 335 GE-ID-LE------EE--NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred cc-ch-hh------hc--cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 21 11 11 11 256789999999999999877665543
No 253
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.05 E-value=4.4e-09 Score=100.13 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=88.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.+++++|.+|+|||||++++..........|.+......... ....+.++||||...... .. ...++.+|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~---~~~~~~a~ 74 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER----LR---PLSYSKAH 74 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccc----cc---hhhcCCCC
Confidence 479999999999999999998544221111211111110011 123578999999753321 11 12357889
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch-----hhccccccCcCCCC-------CccHHHHHHHhhh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS-----VDAKADSKKKMGPK-------KTDEGEKKMLLGR 240 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~-----v~NK~D~~~~~~~~-------~~~~~~l~~l~~~ 240 (561)
++++|+|.+.. ..+..+. .+...+...... |+||+|+.+..... .........+...
T Consensus 75 ~~llv~~i~~~----------~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 75 VILIGFAVDTP----------DSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred EEEEEEECCCH----------HHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 99999976421 1233332 122223222111 89999986432110 1112223333333
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+....+.+|+++|.|++.++.++.+..
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 4444678999999999999999999874
No 254
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.05 E-value=6.9e-10 Score=103.57 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=87.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..++.+.|.+|+|||+|++.+.+..+.....++ .|. +.. ..+.. ...++.+|||+|.+ .+..+...+.+....+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t-~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~~~~~~~~~d~i 80 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGV-EFGARMITIDGKQIKLQIWDTAGQE-SFRSITRSYYRGAAGA 80 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cce-eEEEEEEEECCEEEEEEEEECCCcH-HHHHHHHHHhccCCEE
Confidence 368999999999999999999987543332222 121 111 11112 22468899999954 3444444433322222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +..+...+..+..|+.. +.... ....|+++|+||+|. ..
T Consensus 81 l~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~pvivv~nK~Dl--~~ 123 (168)
T cd01866 81 LLVY----------------DITRRETFNHLTSWLED------------------ARQHS-NSNMTIMLIGNKCDL--ES 123 (168)
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhC-CCCCcEEEEEECccc--cc
Confidence 1111 11222333333333322 11111 146899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
......+..+.++... +.+++++||+.+.|+.++....
T Consensus 124 ~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 124 RREVSYEEGEAFAKEH--GLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred ccCCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 2223344555555543 6789999999999998875443
No 255
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.05 E-value=2.2e-10 Score=127.26 Aligned_cols=152 Identities=19% Similarity=0.098 Sum_probs=94.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
+.|+++|.+|+|||||+|+|++.. ......+|+|.+..... ..+..+.+|||||... +.......+..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~-------f~~~~~~g~~~ 73 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEK-------FISNAIAGGGG 73 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHH-------HHHHHHhhhcc
Confidence 358999999999999999999854 22233467777654321 1234688999999632 22334556788
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHHHHHhhhc---CCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEKKMLLGRV---GTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l~~l~~~~---~~~ 244 (561)
+|++++|+|++.. ......+.+..+ .....+ ++||+|+.+..... .....+..+.... ...
T Consensus 74 aD~aILVVDa~~G-------~~~qT~ehl~il----~~lgi~~iIVVlNK~Dlv~~~~~~-~~~~ei~~~l~~~~~~~~~ 141 (581)
T TIGR00475 74 IDAALLVVDADEG-------VMTQTGEHLAVL----DLLGIPHTIVVITKADRVNEEEIK-RTEMFMKQILNSYIFLKNA 141 (581)
T ss_pred CCEEEEEEECCCC-------CcHHHHHHHHHH----HHcCCCeEEEEEECCCCCCHHHHH-HHHHHHHHHHHHhCCCCCC
Confidence 9999999988631 111122223222 222222 89999997432110 0112233333222 146
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+.+|.|+..+++.+.+.
T Consensus 142 ~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 142 KIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred cEEEEeCCCCCCchhHHHHHHHH
Confidence 78999999999999999888654
No 256
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.04 E-value=5.7e-10 Score=102.98 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=86.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh----hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI----INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~----~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
+|.+.|.+|+||++|++.+++..+.....+.+ + .+.. ..+.. ....+.+|||||.+ .+..+...+.+.....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~~~~~~~~~~~~ 78 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTI-G-VDFLEKQIFLRQSDEDVRLMLWDTAGQE-EFDAITKAYYRGAQAC 78 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcE-E-EEEEEEEEEEcCCCCEEEEEEeeCCchH-HHHHhHHHHhcCCCEE
Confidence 68999999999999999999876543332221 1 1111 11111 12468899999954 4555555554433332
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ .+.+.+.+..+..|+.. +... ....|+++|+||+|. ..
T Consensus 79 v~v~----------------d~~~~~s~~~l~~~~~~------------------~~~~--~~~~p~iiv~nK~Dl--~~ 120 (162)
T cd04106 79 ILVF----------------STTDRESFEAIESWKEK------------------VEAE--CGDIPMVLVQTKIDL--LD 120 (162)
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHh--CCCCCEEEEEEChhc--cc
Confidence 2221 12222333333333221 1111 147899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
......++..++.+.. +.+++++||+++.|++++.+.
T Consensus 121 ~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 121 QAVITNEEAEALAKRL--QLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred ccCCCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHH
Confidence 2222234444444443 578999999999998776443
No 257
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.04 E-value=1e-09 Score=121.38 Aligned_cols=153 Identities=15% Similarity=0.074 Sum_probs=87.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cc----------------cCCeEEEEeCCCcccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NK----------------VPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~----------------~~~~i~l~DtpG~~~~~ 155 (561)
++-|+++|.+|+|||||+|+|++.........|+|.+.... .. ...++.+|||||.....
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 45699999999999999999998764322223345431110 00 00248899999974322
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCC-----
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPK----- 227 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~----- 227 (561)
. + ....++.+|++++|+|++... ....+..+.. +.....+ ++||+|+.......
T Consensus 84 ~----l---~~~~~~~aD~~IlVvD~~~g~-------~~qt~e~i~~----l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f 145 (590)
T TIGR00491 84 N----L---RKRGGALADLAILIVDINEGF-------KPQTQEALNI----LRMYKTPFVVAANKIDRIPGWRSHEGRPF 145 (590)
T ss_pred H----H---HHHHHhhCCEEEEEEECCcCC-------CHhHHHHHHH----HHHcCCCEEEEEECCCccchhhhccCchH
Confidence 1 1 123457899999999876310 1111222221 2222223 89999997421100
Q ss_pred ---C-ccH----HHH--------HHHh-------------hhcCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 228 ---K-TDE----GEK--------KMLL-------------GRVGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 228 ---~-~~~----~~l--------~~l~-------------~~~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
+ .+. ..+ ..+. ......+.+++||.+|.|++.|+.+|..
T Consensus 146 ~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 146 MESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0 000 000 0111 1112457899999999999999998854
No 258
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.04 E-value=1.3e-09 Score=123.58 Aligned_cols=151 Identities=14% Similarity=0.083 Sum_probs=96.4
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..+++.|+++|.+|+|||||+++|++.....+..+|.|.+..... +.+..+.||||||...... .....++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~-------m~~rga~ 359 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA-------MRARGAQ 359 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchh-------HHHhhhh
Confidence 356788999999999999999999987755566778886654321 2245799999999754321 1223457
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhh------hc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLG------RV 241 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~------~~ 241 (561)
.+|++++|+|++..- .....+.+. .......+ ++||+|+.... .......+.. ..
T Consensus 360 ~aDiaILVVdAddGv-------~~qT~e~i~----~a~~~~vPiIVviNKiDl~~a~-----~e~V~~eL~~~~~~~e~~ 423 (787)
T PRK05306 360 VTDIVVLVVAADDGV-------MPQTIEAIN----HAKAAGVPIIVAINKIDKPGAN-----PDRVKQELSEYGLVPEEW 423 (787)
T ss_pred hCCEEEEEEECCCCC-------CHhHHHHHH----HHHhcCCcEEEEEECccccccC-----HHHHHHHHHHhcccHHHh
Confidence 789999999876311 011111111 12222222 89999996421 0111111111 11
Q ss_pred -CCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 242 -GTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 242 -~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
...+.+.+||++|.|+..|+++|..
T Consensus 424 g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 424 GGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCCceEEEEeCCCCCCchHHHHhhhh
Confidence 2357899999999999999999874
No 259
>KOG0094|consensus
Probab=99.03 E-value=1.3e-09 Score=100.65 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=100.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..|+.++|-.+|||||||++.+-......-.+-...+.... + -....++||||+|..+... -.-.++|+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrs-------lipsY~Rd 94 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRD 94 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhh-------hhhhhccC
Confidence 37899999999999999999985442211111111111110 1 1234699999999876553 23467899
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+.+++.|.|.+..+ .+++.+ .+.+.+.+-... |+||.|+....+...+.-+....-+ ..
T Consensus 95 s~vaviVyDit~~~----------Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel----~a 160 (221)
T KOG0094|consen 95 SSVAVIVYDITDRN----------SFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKEL----NA 160 (221)
T ss_pred CeEEEEEEeccccc----------hHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHh----Cc
Confidence 99999999876322 233333 333333333221 8999999977665432222221111 22
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDV 274 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v 274 (561)
.-+..|+++|.|+..||..+....+.....
T Consensus 161 ~f~etsak~g~NVk~lFrrIaa~l~~~~~~ 190 (221)
T KOG0094|consen 161 EFIETSAKAGENVKQLFRRIAAALPGMEVL 190 (221)
T ss_pred EEEEecccCCCCHHHHHHHHHHhccCcccc
Confidence 678999999999999999999987766553
No 260
>CHL00071 tufA elongation factor Tu
Probab=99.03 E-value=3.7e-10 Score=120.69 Aligned_cols=145 Identities=15% Similarity=0.075 Sum_probs=85.8
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCCc----------------ccCCCcccccCcccc--ccCCeEEEEeCCCcccC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSAA----------------AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~~----------------~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~ 154 (561)
....++|+++|.+|+|||||+|+|++.... ....+|+|++..... ..+.++.|+||||...
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~- 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD- 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH-
Confidence 445689999999999999999999975311 112367777654322 2345789999999531
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCcc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~ 230 (561)
+.......+..+|++++|+|+... ......+ .-..+..+..+ +.||+|+..........
T Consensus 88 ------~~~~~~~~~~~~D~~ilVvda~~g-------~~~qt~~----~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~ 150 (409)
T CHL00071 88 ------YVKNMITGAAQMDGAILVVSAADG-------PMPQTKE----HILLAKQVGVPNIVVFLNKEDQVDDEELLELV 150 (409)
T ss_pred ------HHHHHHHHHHhCCEEEEEEECCCC-------CcHHHHH----HHHHHHHcCCCEEEEEEEccCCCCHHHHHHHH
Confidence 222335567889999999987521 0001111 11222333332 69999997432211111
Q ss_pred HHHHHHHhhhcC----CCcEEEEEccCCC
Q psy17315 231 EGEKKMLLGRVG----TNLKVGIVGVPNV 255 (561)
Q Consensus 231 ~~~l~~l~~~~~----~~~~i~isg~~~~ 255 (561)
..++...+.... ..+.+++||.+|.
T Consensus 151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 151 ELEVRELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence 123333433322 2567999999885
No 261
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.03 E-value=9.2e-10 Score=103.78 Aligned_cols=159 Identities=15% Similarity=0.143 Sum_probs=85.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|.+|+|||+|++.+.+..+.....+...... ...+.. ....+.+|||||.. .+..+...........+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~l~D~~g~~-~~~~~~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF--SKIIRYKGQDYHLEIVDTAGQD-EYSILPQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE--EEEEEECCEEEEEEEEECCChH-hhHHHHHHHHhhCCEEEE
Confidence 4689999999999999999998765433333211110 111222 22357899999964 354444443322222111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..+.. .+++... ....|+|+|+||+|... ..
T Consensus 79 v~----------------d~~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~p~ilv~NK~Dl~~--~~ 122 (180)
T cd04137 79 VY----------------SVTSRKSFEVVKVIYD-----------------KILDMLG-KESVPIVLVGNKSDLHT--QR 122 (180)
T ss_pred EE----------------ECCCHHHHHHHHHHHH-----------------HHHHhcC-CCCCCEEEEEEchhhhh--cC
Confidence 11 1111122222222111 1122111 24689999999996532 11
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
....+.+..+.+.. +.+++++||+++.|+.++.+.....+
T Consensus 123 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 123 QVSTEEGKELAESW--GAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred ccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11223333444333 56899999999999988866554443
No 262
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.03 E-value=7.5e-10 Score=106.99 Aligned_cols=151 Identities=19% Similarity=0.127 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC--ccc-CCCcccccCc---------------------------c------c--ccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA--AAE-NFPFCTIDPN---------------------------E------N--NKV 139 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~--~~~-~~~~~T~~~~---------------------------~------~--~~~ 139 (561)
.||++|..++|||||+.+|++... ... -.-|.|.... . + ...
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 689999999999999999987521 000 0001111000 0 0 000
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hh
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VD 215 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~ 215 (561)
...+.||||||.. .+...++..+..+|++++|+|++... ......+.+.. +.... .+ ++
T Consensus 82 ~~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~~~~------~~~~t~~~l~~----~~~~~~~~iiivv 144 (203)
T cd01888 82 VRHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAANEPC------PQPQTSEHLAA----LEIMGLKHIIIVQ 144 (203)
T ss_pred ccEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECCCCC------CCcchHHHHHH----HHHcCCCcEEEEE
Confidence 1578999999952 23345567778899999999876310 00111112221 11111 12 89
Q ss_pred ccccccCcCCCCCccHHHHHHHhhhc-----CCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 216 AKADSKKKMGPKKTDEGEKKMLLGRV-----GTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 216 NK~D~~~~~~~~~~~~~~l~~l~~~~-----~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
||+|+..... ....++.+.... ...+.+.+|+++|.|++.|++++.+..+
T Consensus 145 NK~Dl~~~~~----~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 145 NKIDLVKEEQ----ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred EchhccCHHH----HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 9999973211 111122222222 2456899999999999999999988653
No 263
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.02 E-value=9.8e-10 Score=123.50 Aligned_cols=154 Identities=11% Similarity=0.029 Sum_probs=95.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--c----cCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--K----VPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
.++..|+++|.+|+|||||+++|++.....+..+|.|.+..... . ....+.||||||..... .....
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~-------~mr~r 314 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS-------SMRSR 314 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH-------HHHHH
Confidence 46679999999999999999999987755555677776543221 1 13579999999974322 11233
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHH---hhhc
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKML---LGRV 241 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l---~~~~ 241 (561)
.++.+|++++|+|+...- .....+.+.. +.....+ ++||+|+.... . ......+... ....
T Consensus 315 g~~~aDiaILVVDA~dGv-------~~QT~E~I~~----~k~~~iPiIVViNKiDl~~~~-~-e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 315 GANVTDIAILIIAADDGV-------KPQTIEAINY----IQAANVPIIVAINKIDKANAN-T-ERIKQQLAKYNLIPEKW 381 (742)
T ss_pred HHHHCCEEEEEEECcCCC-------ChhhHHHHHH----HHhcCceEEEEEECCCccccC-H-HHHHHHHHHhccchHhh
Confidence 567899999999875311 1111222221 2222222 89999997421 0 0000111111 0111
Q ss_pred -CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 -GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 -~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+.+.+||++|.|+..|+.++...
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 23468999999999999999998763
No 264
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.02 E-value=5.4e-10 Score=124.55 Aligned_cols=151 Identities=15% Similarity=0.086 Sum_probs=93.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCccccc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
-|+++|.+++|||||+|+|+|.. .......|.|.+...... .+..+.+|||||... +....+..+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-------fi~~m~~g~~~ 74 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-------FLSNMLAGVGG 74 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-------HHHHHHHHhhc
Confidence 48999999999999999999864 223344678876533211 234588999999732 22233555788
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----hhhccccccCcCCCCCccHHHHHHHhhhc--CCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----SVDAKADSKKKMGPKKTDEGEKKMLLGRV--GTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~v~NK~D~~~~~~~~~~~~~~l~~l~~~~--~~~~ 245 (561)
+|++++|+|+... ......+.+. .+..+.. .|+||+|+.+...... ....+....... ...+
T Consensus 75 ~D~~lLVVda~eg-------~~~qT~ehl~----il~~lgi~~iIVVlNKiDlv~~~~~~~-v~~ei~~~l~~~~~~~~~ 142 (614)
T PRK10512 75 IDHALLVVACDDG-------VMAQTREHLA----ILQLTGNPMLTVALTKADRVDEARIAE-VRRQVKAVLREYGFAEAK 142 (614)
T ss_pred CCEEEEEEECCCC-------CcHHHHHHHH----HHHHcCCCeEEEEEECCccCCHHHHHH-HHHHHHHHHHhcCCCCCc
Confidence 9999999987521 0111122222 2222222 2899999974221110 111222222221 2357
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+++|+.+|.|+.+|+++|.+.
T Consensus 143 ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 143 LFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred EEEEeCCCCCCCHHHHHHHHHh
Confidence 8999999999999999999864
No 265
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.02 E-value=1e-10 Score=107.94 Aligned_cols=154 Identities=20% Similarity=0.169 Sum_probs=77.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhh-hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEII-NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~-~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.|++.|.+|+|||+|++.+++.....-.....+++ ++... .+.+. +..+.+|||||.++....+... .++.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~-~~~a----- 75 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAG-AGGI----- 75 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhh-hhcC-----
Confidence 58999999999999999998752111000011122 22211 12222 4578899999975533222211 1111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
|++..|++... .+..+....+........+|+++|+||+|.......
T Consensus 76 -----------------------d~ii~V~d~~~----------~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~ 122 (164)
T cd04171 76 -----------------------DLVLLVVAADE----------GIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWL 122 (164)
T ss_pred -----------------------CEEEEEEECCC----------CccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH
Confidence 22222222100 111111222221221123599999999954211101
Q ss_pred cchHHHHHHHHHhc-CCCCeEEeechhhhhhhCCCCH
Q psy17315 403 NKWLPKIKEWVDAN-DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 403 ~~~~~~l~~~~~~~-~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
....+++.+.+... ..+.+++++||+++.|++++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 123 ELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHH
Confidence 12234444544431 1256899999999999887643
No 266
>KOG0394|consensus
Probab=99.01 E-value=2.9e-09 Score=97.47 Aligned_cols=158 Identities=20% Similarity=0.185 Sum_probs=111.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-----CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-----AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-----~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
...+||.+.|-+|||||||+|.+...+ -.+-..-+.|++.... ..-..+++|||+|..+..+- +-.|
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQERFqsL----g~aF--- 78 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQERFQSL----GVAF--- 78 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHHHhhhc----ccce---
Confidence 456899999999999999999998765 2244456778776542 22246899999999776642 2333
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----------hhccccccCcCCCCCccHHHHHHHh
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----------VDAKADSKKKMGPKKTDEGEKKMLL 238 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----------v~NK~D~~~~~~~~~~~~~~l~~l~ 238 (561)
.|.||+.++|.|. +....+..++.+++++.....+ ++||+|......-.. ..+.....=
T Consensus 79 YRgaDcCvlvydv----------~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~V-S~~~Aq~WC 147 (210)
T KOG0394|consen 79 YRGADCCVLVYDV----------NNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQV-SEKKAQTWC 147 (210)
T ss_pred ecCCceEEEEeec----------CChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcccee-eHHHHHHHH
Confidence 6999999999965 4455677888887777655443 899999975321111 112222333
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
...+..+.+.+||+.+.++...|..++.+...
T Consensus 148 ~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 148 KSKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HhcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 34467788999999999999999999887543
No 267
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.01 E-value=1.1e-09 Score=101.19 Aligned_cols=154 Identities=15% Similarity=0.192 Sum_probs=86.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
++.+.|.+|+||++|++.+.+..+.....+. .+. ..+. ..+......+.+|||+|.++ +..+.....+....++..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHT-IGVEFGSKIIRVGGKRVKLQIWDTAGQER-FRSVTRSYYRGAAGALLV 79 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeEEEEEEEECCEEEEEEEEECcchHH-HHHhHHHHhcCCCEEEEE
Confidence 6899999999999999999987654332222 121 1111 11111224678999999643 444433333322222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+......+..++.. +.... ....|+++|+||+|. .....
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~iivv~nK~D~--~~~~~ 122 (161)
T cd04113 80 Y----------------DITNRTSFEALPTWLSD------------------ARALA-SPNIVVILVGNKSDL--ADQRE 122 (161)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhC-CCCCeEEEEEEchhc--chhcc
Confidence 1 12222333333333222 11111 147899999999954 32223
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+.+..++... +.+++.+||+++.|+.++.+..
T Consensus 123 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 123 VTFLEASRFAQEN--GLLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred CCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHH
Confidence 3344555555554 5789999999999998875544
No 268
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.01 E-value=1.1e-09 Score=102.70 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=85.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+||++|++++.+..|.....+.+.-.... ..+... ...+.+|||+|.++ +..+...+.++..-++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEM-ERFEILGVPFSLQLWDTAGQER-FKCIASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEE-EEEEECCEEEEEEEEeCCChHH-HHhhHHHHhcCCCEEEEE
Confidence 58899999999999999999987765443332111110 112111 24588999999643 555544444333222221
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..|+.+ +.....-...|+++|+||+|. .+...
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~~iilVgnK~Dl--~~~~~ 123 (170)
T cd04108 80 F----------------DLTDVASLEHTRQWLED------------------ALKENDPSSVLLFLVGTKKDL--SSPAQ 123 (170)
T ss_pred E----------------ECcCHHHHHHHHHHHHH------------------HHHhcCCCCCeEEEEEEChhc--Ccccc
Confidence 1 11222333333333221 111111023578999999954 22111
Q ss_pred --chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 404 --KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 404 --~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
...+...++.... +.+++.+||++|.|+.++.+...+
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~e~Sa~~g~~v~~lf~~l~~ 162 (170)
T cd04108 124 YALMEQDAIKLAAEM--QAEYWSVSALSGENVREFFFRVAA 162 (170)
T ss_pred ccccHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 1122333444433 467899999999999888655443
No 269
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.01 E-value=8.4e-10 Score=102.31 Aligned_cols=154 Identities=12% Similarity=0.084 Sum_probs=83.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
+|.+.|.+|+|||+|++.+....+.....+....+.... ..+......+.+|||+|.+ .+..+...+.+....++..+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE-RFQTMHASYYHKAHACILVF 80 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch-hhhhhhHHHhCCCCEEEEEE
Confidence 689999999999999999988765433322211111000 1111122457899999954 45555444433332221111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
+..+......+..|+.. +... ....|+++|+||+|.+..
T Consensus 81 ----------------d~~~~~s~~~~~~~~~~------------------i~~~--~~~~p~ivv~nK~Dl~~~----- 119 (161)
T cd04124 81 ----------------DVTRKITYKNLSKWYEE------------------LREY--RPEIPCIVVANKIDLDPS----- 119 (161)
T ss_pred ----------------ECCCHHHHHHHHHHHHH------------------HHHh--CCCCcEEEEEECccCchh-----
Confidence 11112222222222211 1111 136899999999964211
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
..++..++.... +.+++++||++|.|+.++.+...+.
T Consensus 120 ~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 120 VTQKKFNFAEKH--NLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred HHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 112223333332 5789999999999998886655443
No 270
>KOG0070|consensus
Probab=99.01 E-value=7.2e-10 Score=102.06 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=106.5
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
....++|.++|+-|+||||++..|...+ ..+.|.-|.-.+... +.+..+.+||.-|..+-++ -+..+.++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~--ykn~~f~vWDvGGq~k~R~-------lW~~Y~~~ 84 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVE--YKNISFTVWDVGGQEKLRP-------LWKHYFQN 84 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEE--EcceEEEEEecCCCccccc-------chhhhccC
Confidence 3456899999999999999999998766 666666665555433 3466799999999854332 34556789
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch----hhccccccCcCCCCCc-cHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS----VDAKADSKKKMGPKKT-DEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~----v~NK~D~~~~~~~~~~-~~~~l~~l~~~~~~~ 244 (561)
.+.+++|||+++++ ...+.-+.+...+.+.. .. ++||.|.+.++.+.+. ..-.+..+.. ..+
T Consensus 85 t~~lIfVvDS~Dr~---------Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~--~~w 153 (181)
T KOG0070|consen 85 TQGLIFVVDSSDRE---------RIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS--RNW 153 (181)
T ss_pred CcEEEEEEeCCcHH---------HHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC--CCc
Confidence 99999999988533 22233333333333321 11 7999999977664321 1111222222 678
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..-++++.+|.|+.+.++++.+..
T Consensus 154 ~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 154 HIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred EEeeccccccccHHHHHHHHHHHH
Confidence 889999999999999999998763
No 271
>KOG0098|consensus
Probab=99.01 E-value=1e-09 Score=100.65 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=109.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|.+|+|||.|+-+++.+.|....-++. | ++-. +.+.+. ...|.+|||+| ++.+..+.+.+++++..++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~Ti-G-vefg~r~~~id~k~IKlqiwDtaG-qe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTI-G-VEFGARMVTIDGKQIKLQIWDTAG-QESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcccccccee-e-eeeceeEEEEcCceEEEEEEecCC-cHHHHHHHHHHhccCcceE
Confidence 468899999999999999999987653322211 1 1100 122222 24578999999 5668888888888877766
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ +|++.+...++-.||++ ++... ..+.-++++.||+|.+. .
T Consensus 84 LVy----------------dit~r~sF~hL~~wL~D------------------~rq~~-~~NmvImLiGNKsDL~~--r 126 (216)
T KOG0098|consen 84 LVY----------------DITRRESFNHLTSWLED------------------ARQHS-NENMVIMLIGNKSDLEA--R 126 (216)
T ss_pred EEE----------------EccchhhHHHHHHHHHH------------------HHHhc-CCCcEEEEEcchhhhhc--c
Confidence 655 67888999999888887 22221 14677889999995543 2
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....++-+.+++++ +..+..+||++++|++++......
T Consensus 127 R~Vs~EEGeaFA~eh--gLifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 127 REVSKEEGEAFAREH--GLIFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred ccccHHHHHHHHHHc--CceeehhhhhhhhhHHHHHHHHHH
Confidence 344556777788876 777889999999998887554433
No 272
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.00 E-value=1.1e-09 Score=105.52 Aligned_cols=160 Identities=17% Similarity=0.234 Sum_probs=91.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.++|.+|+|||+|++.+.+..+.....+++.... ....+... ...+.+|||||. +.+..+...+.+....++
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~l~l~D~~G~-~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF-KIRTVEINGERVKLQIWDTAGQ-ERFRTITSTYYRGTHGVI 83 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccccee-EEEEEEECCEEEEEEEEeCCCc-hhHHHHHHHHhCCCcEEE
Confidence 36899999999999999999998865433332221111 01122222 235789999995 335555544443332222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..|+.. +.... ...|+++|+||+|. ...
T Consensus 84 lv~----------------D~~~~~s~~~~~~~~~~------------------i~~~~--~~~piivVgNK~Dl--~~~ 125 (199)
T cd04110 84 VVY----------------DVTNGESFVNVKRWLQE------------------IEQNC--DDVCKVLVGNKNDD--PER 125 (199)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECccc--ccc
Confidence 111 22333444434333322 11111 35799999999954 321
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....+...+++... +.+++++||++|.|+.++.+.....++
T Consensus 126 ~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 126 KVVETEDAYKFAGQM--GISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred cccCHHHHHHHHHHc--CCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 222234444555443 578999999999999988766655443
No 273
>PRK00098 GTPase RsgA; Reviewed
Probab=99.00 E-value=5e-10 Score=114.63 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=81.2
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhh-hcCCCCc-----cCCC-ChHHHHHHHHHHHhcCCCc--cccccccC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQIL-ISDKPTW-----GDGD-GPKAPKRRKQHLSDKLRPK--ADSKKKMG 77 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~-~~~k~~l-----~DL~-~~~~~~~w~~~l~~~~~~~--~~~~~~~~ 77 (561)
+..+-|.|++.| ....+ .+++..... ..+.|.+ +||+ +....+.|.+.++..+..+ +++..+.+
T Consensus 82 D~vllV~d~~~p------~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 82 DQAVLVFAAKEP------DFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred CEEEEEEECCCC------CCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 456889999988 43322 123311111 1234544 9998 5556677888887766554 56665544
Q ss_pred CCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc-------ccccCccccccCCeEEEEeCC
Q psy17315 78 PKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF-------CTIDPNENNKVPAFLNVVDIA 149 (561)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~-------~T~~~~~~~~~~~~i~l~Dtp 149 (561)
..... ... .+..++++|.||||||||+|+|.+.. ..++..++ +|+.... ...+...+++|||
T Consensus 155 i~~L~--------~~l-~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~-~~~~~~~~~~Dtp 224 (298)
T PRK00098 155 LDELK--------PLL-AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVEL-YDLPGGGLLIDTP 224 (298)
T ss_pred HHHHH--------hhc-cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEE-EEcCCCcEEEECC
Confidence 33211 111 24579999999999999999999876 55555554 4544322 2334557999999
Q ss_pred Cccc
Q psy17315 150 GLVK 153 (561)
Q Consensus 150 G~~~ 153 (561)
|+..
T Consensus 225 G~~~ 228 (298)
T PRK00098 225 GFSS 228 (298)
T ss_pred CcCc
Confidence 9974
No 274
>PRK11058 GTPase HflX; Provisional
Probab=99.00 E-value=7.1e-11 Score=126.12 Aligned_cols=58 Identities=29% Similarity=0.391 Sum_probs=42.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh-HhhhcccHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN-EELRLKDVEHIE 303 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~-~el~l~Dt~Gi~ 303 (561)
.+.++++|.+|+|||+|+|.|++..+...+.++ .|.||.. .+.+.+ ..+.+|||||+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~--tTld~~~~~i~l~~~~~~~l~DTaG~~ 256 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLF--ATLDPTLRRIDVADVGETVLADTVGFI 256 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCC--CCcCCceEEEEeCCCCeEEEEecCccc
Confidence 368999999999999999999987554434433 3456653 344444 378899999983
No 275
>PRK12735 elongation factor Tu; Reviewed
Probab=98.99 E-value=9.3e-10 Score=117.14 Aligned_cols=160 Identities=15% Similarity=0.125 Sum_probs=94.8
Q ss_pred hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-------C---------cccCCCcccccCcccc--ccCCeEEEEeCCCc
Q psy17315 90 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-------A---------AAENFPFCTIDPNENN--KVPAFLNVVDIAGL 151 (561)
Q Consensus 90 ~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-------~---------~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~ 151 (561)
..+....++|+++|.+|+|||||+++|++.. . ......|+|.+..... ..+.++.|+||||.
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 3445566899999999999999999998621 1 0111456666643221 22457899999997
Q ss_pred ccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCC
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPK 227 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~ 227 (561)
.. +.......+..+|++++|+|+...- .....+.+ ..+.....+ +.||+|+......-
T Consensus 86 ~~-------f~~~~~~~~~~aD~~llVvda~~g~-------~~qt~e~l----~~~~~~gi~~iivvvNK~Dl~~~~~~~ 147 (396)
T PRK12735 86 AD-------YVKNMITGAAQMDGAILVVSAADGP-------MPQTREHI----LLARQVGVPYIVVFLNKCDMVDDEELL 147 (396)
T ss_pred HH-------HHHHHHhhhccCCEEEEEEECCCCC-------chhHHHHH----HHHHHcCCCeEEEEEEecCCcchHHHH
Confidence 42 2233345677899999999875310 01111111 122233333 48999997421111
Q ss_pred CccHHHHHHHhhhcC----CCcEEEEEccCCC----------CHHHHHHHHHhh
Q psy17315 228 KTDEGEKKMLLGRVG----TNLKVGIVGVPNV----------GKSTFFNVLTKR 267 (561)
Q Consensus 228 ~~~~~~l~~l~~~~~----~~~~i~isg~~~~----------Gks~l~~~l~~~ 267 (561)
.....++..++.... ..+.+.+||.+|. |..+|+++|.+.
T Consensus 148 ~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 148 ELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 111123444443332 3567999999983 677888888764
No 276
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.99 E-value=1.1e-09 Score=102.17 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=89.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+||++|++.+....+.....+.+ |. +.. ..+... ...+.+|||+|. +++..+...+.+.....+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~i~D~~G~-~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI-GV-EFLNKDLEVDGHFVTLQIWDTAGQ-ERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCce-ee-EEEEEEEEECCeEEEEEEEeCCCh-HHHHHhHHHHhcCCCEEE
Confidence 579999999999999999999876654433322 21 111 112222 235788999995 445555555544333222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..|..+ -.. ..........|+++|+||+|.. .
T Consensus 83 ~v~----------------d~~~~~s~~~~~~~~~~--------------~~~-~~~~~~~~~~piilv~nK~Dl~--~- 128 (170)
T cd04116 83 LTF----------------AVDDSQSFQNLSNWKKE--------------FIY-YADVKEPESFPFVVLGNKNDIP--E- 128 (170)
T ss_pred EEE----------------ECCCHHHHHhHHHHHHH--------------HHH-hcccccCCCCcEEEEEECcccc--c-
Confidence 111 22333444433333222 000 0000011357999999999642 2
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+++.++++... ..+++++||++|.|+.++.+..
T Consensus 129 ~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~~~~~ 166 (170)
T cd04116 129 RQVSTEEAQAWCRENG-DYPYFETSAKDATNVAAAFEEA 166 (170)
T ss_pred cccCHHHHHHHHHHCC-CCeEEEEECCCCCCHHHHHHHH
Confidence 2333456666665541 3578999999999988875543
No 277
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.99 E-value=1.1e-09 Score=104.53 Aligned_cols=162 Identities=15% Similarity=0.169 Sum_probs=88.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+|||+|++.+....+....+.++.|..--...+...+ ..+.+|||+|.+ +...+...+.+....++..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~-~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE-RYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch-hhhhhhHhhcCCCCEEEEE
Confidence 6899999999999999999988765433333222210011222222 346799999953 3444444433222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh--
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-- 401 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-- 401 (561)
+ ++.+.+.+..+..|+.. +.... ...|+++|+||+|......
T Consensus 81 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~--~~~piilv~nK~Dl~~~~~~~ 124 (193)
T cd04118 81 Y----------------DLTDSSSFERAKFWVKE------------------LQNLE--EHCKIYLCGTKSDLIEQDRSL 124 (193)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHhcC--CCCCEEEEEEccccccccccc
Confidence 1 11222222222222221 11111 3689999999996421110
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
.....+++.++.... +.+++++||+++.|+.+|.+...+.+.+
T Consensus 125 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 125 RQVDFHDVQDFADEI--KAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred CccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111123444544443 5778999999999999887766555543
No 278
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.99 E-value=2.4e-09 Score=103.13 Aligned_cols=149 Identities=18% Similarity=0.110 Sum_probs=90.3
Q ss_pred EEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCCEEEE
Q psy17315 102 VGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177 (561)
Q Consensus 102 vG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~ 177 (561)
+|.+|||||||++++...... ..+..|.+....... .....+.+|||||...... + ....++.+|++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~----l---~~~~~~~ad~~il 73 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG----L---RDGYYIQGQCAII 73 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh----h---hHHHhcCCCEEEE
Confidence 589999999999999865421 222222222211101 1234689999999854331 1 1235689999999
Q ss_pred EecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEcc
Q psy17315 178 LCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 178 VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~ 252 (561)
|+|.+.++ .+.++..+..++...... |+||+|+..+.- . .... .+ ........+.+|++
T Consensus 74 V~D~t~~~----------S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v--~--~~~~-~~-~~~~~~~~~e~SAk 137 (200)
T smart00176 74 MFDVTARV----------TYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKV--K--AKSI-TF-HRKKNLQYYDISAK 137 (200)
T ss_pred EEECCChH----------HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC--C--HHHH-HH-HHHcCCEEEEEeCC
Confidence 99886322 223333333334332222 899999864321 1 1112 11 11234567999999
Q ss_pred CCCCHHHHHHHHHhhccCCCc
Q psy17315 253 PNVGKSTFFNVLTKRAFEDDD 273 (561)
Q Consensus 253 ~~~Gks~l~~~l~~~~~~~~~ 273 (561)
+|.|+..+|+++....+....
T Consensus 138 ~~~~v~~~F~~l~~~i~~~~~ 158 (200)
T smart00176 138 SNYNFEKPFLWLARKLIGDPN 158 (200)
T ss_pred CCCCHHHHHHHHHHHHHhccc
Confidence 999999999999988655433
No 279
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.99 E-value=1.2e-09 Score=106.39 Aligned_cols=158 Identities=14% Similarity=0.143 Sum_probs=91.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh---hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII---NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
++.+.|.+|+|||+|++.+.+..|.....++. | .|.. +.+... ...+.+|||+|.+ ....+...+.+....++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~-~-~d~~~~~i~~~~~~~~~~~i~Dt~G~~-~~~~l~~~~~~~ad~ii 78 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTI-G-LDFFSKRVTLPGNLNVTLQVWDIGGQS-IGGKMLDKYIYGAHAVF 78 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCce-e-EEEEEEEEEeCCCCEEEEEEEECCCcH-HHHHHHHHHhhcCCEEE
Confidence 68999999999999999999886654433321 1 2221 122221 2467899999953 34444444443333222
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh--ccCCceEEEecCChhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL--LTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~--l~~kP~iiv~NK~D~d~~ 399 (561)
..+ ++.+.+.+..+..|+.. +..... ....|+++|+||+|. .
T Consensus 79 lV~----------------D~t~~~s~~~~~~w~~~------------------l~~~~~~~~~~~piilVgNK~DL--~ 122 (215)
T cd04109 79 LVY----------------DVTNSQSFENLEDWYSM------------------VRKVLKSSETQPLVVLVGNKTDL--E 122 (215)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhccccCCCceEEEEEECccc--c
Confidence 222 23333444444444332 111110 124579999999954 3
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.......++..++.... +.+.+++||++|.|+.++.+.....+
T Consensus 123 ~~~~v~~~~~~~~~~~~--~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 123 HNRTVKDDKHARFAQAN--GMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred cccccCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 22233334455555443 56789999999999999876655443
No 280
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.98 E-value=2e-10 Score=123.42 Aligned_cols=200 Identities=22% Similarity=0.265 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHHHhcchhhccccccCcCCCCCccH-------HHHHHHh-----hhcCCCcEEEEEccCCCCHHHHHHHH
Q psy17315 197 WRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDE-------GEKKMLL-----GRVGTNLKVGIVGVPNVGKSTFFNVL 264 (561)
Q Consensus 197 ~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~-------~~l~~l~-----~~~~~~~~i~isg~~~~Gks~l~~~l 264 (561)
.+.++.+.+.+.++...+---+|-++...+..... ..+++++ .......++.+.|.+|+|||+|+|.+
T Consensus 144 s~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L 223 (442)
T TIGR00450 144 DQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQDSLNQLLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNAL 223 (442)
T ss_pred HHHHHHHHHHHHHHHHHeeEECCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHH
Confidence 44555566666666555555677775432111001 1112222 22356789999999999999999999
Q ss_pred HhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCC
Q psy17315 265 TKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHI 342 (561)
Q Consensus 265 ~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i 342 (561)
++. ....++..+||+ |... .+.+.+..+.+|||||+++..+.+++........ + +
T Consensus 224 ~~~--~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~----~-----------------~ 280 (442)
T TIGR00450 224 LKQ--DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK----A-----------------I 280 (442)
T ss_pred hCC--CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH----H-----------------H
Confidence 986 334455566775 3332 2344456788999999854333332221110000 0 1
Q ss_pred ChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeE
Q psy17315 343 GHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATI 422 (561)
Q Consensus 343 ~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~v 422 (561)
..+|++..|.+... ..+.++. ++..... ..+|+++|+||+|. .. . . .+ ++.+.. +.++
T Consensus 281 ~~aD~il~V~D~s~----------~~s~~~~-~l~~~~~-~~~piIlV~NK~Dl--~~-~-~-~~---~~~~~~--~~~~ 338 (442)
T TIGR00450 281 KQADLVIYVLDASQ----------PLTKDDF-LIIDLNK-SKKPFILVLNKIDL--KI-N-S-LE---FFVSSK--VLNS 338 (442)
T ss_pred hhCCEEEEEEECCC----------CCChhHH-HHHHHhh-CCCCEEEEEECccC--CC-c-c-hh---hhhhhc--CCce
Confidence 11233333322110 1122222 3333322 47899999999954 32 1 1 11 222221 4678
Q ss_pred EeechhhhhhhCCCCHHHHH
Q psy17315 423 IPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 423 i~iSA~~~~gl~~L~~~~~~ 442 (561)
+.+||++ .|+.++.+...+
T Consensus 339 ~~vSak~-~gI~~~~~~L~~ 357 (442)
T TIGR00450 339 SNLSAKQ-LKIKALVDLLTQ 357 (442)
T ss_pred EEEEEec-CCHHHHHHHHHH
Confidence 9999998 466666544433
No 281
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.98 E-value=6.2e-10 Score=115.24 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=46.0
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hhhh-HhhhcccHHHHH
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EIIN-EELRLKDVEHIE 303 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~~~-~el~l~Dt~Gi~ 303 (561)
+..-..|.++|.+|+|||||++.|++..+..+.++++ |.+|.... .+.+ .++.+|||||+.
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fT--T~~p~ig~v~~~~~~~~~i~D~PGli 216 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT--TLVPNLGVVRVDDGRSFVIADIPGLI 216 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCC--ccCCEEEEEEeCCceEEEEEeCCCcc
Confidence 3455779999999999999999999987666666653 34565543 3333 578999999974
No 282
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.98 E-value=1.8e-09 Score=99.67 Aligned_cols=156 Identities=16% Similarity=0.229 Sum_probs=85.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
++.+.|.+|+||++|++.+.+..+.....+.+.-+.. ...+...+ ..+.+|||+|.. .+..+.....+....++..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~-~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFK-TKTIEVDGKRVKLQIWDTAGQE-RFRSITSSYYRGAVGALLV 79 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEE-EEEEEECCEEEEEEEEECCChH-HHHHHHHHHhCCCCEEEEE
Confidence 6899999999999999999988653333222111110 11222222 367899999954 3444444433222211111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+...+..+..|+.. +..... ...|+++|+||+|. .....
T Consensus 80 ~----------------d~~~~~s~~~~~~~l~~------------------~~~~~~-~~~pivvv~nK~D~--~~~~~ 122 (164)
T smart00175 80 Y----------------DITNRESFENLKNWLKE------------------LREYAD-PNVVIMLVGNKSDL--EDQRQ 122 (164)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEEchhc--ccccC
Confidence 1 11222222222222221 111111 36899999999954 32122
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
...+.+.++.+.. +.+++++||+++.|+.++.+...+
T Consensus 123 ~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 123 VSREEAEAFAEEH--GLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred CCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 2334455555443 578999999999998888655443
No 283
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.98 E-value=2.3e-09 Score=103.26 Aligned_cols=62 Identities=5% Similarity=-0.039 Sum_probs=40.8
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
...|+++|+||+|.. .......+.+.+++... .+.+++++||++|.|+.+|.+...+.++..
T Consensus 115 ~~~piiivgNK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 115 KEPPIVVVGNKRDQQ--RHRFAPRHVLSVLVRKS-WKCGYLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCEEEEEECcccc--ccccccHHHHHHHHHHh-cCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 468999999999652 21122223344443322 157899999999999999977766655443
No 284
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.97 E-value=1.9e-09 Score=99.63 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=85.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|.+|+|||+|++.+.+..+.....+. .|. .... ..+......+.+|||||- +++......+.++...++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~~~v~~~~~~~~~~i~D~~G~-~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQEST-IGAAFLTQTVNLDDTTVKFEIWDTAGQ-ERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cceeEEEEEEEECCEEEEEEEEeCCch-HHHHHHHHHHhccCCEEEE
Confidence 47899999999999999999998654422222 222 1110 112222346789999994 3344444444332222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +..+.+.+..+..++.. +..... ...|+++++||+|. ....
T Consensus 80 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~~iivv~nK~D~--~~~~ 122 (163)
T cd01860 80 VY----------------DITSEESFEKAKSWVKE------------------LQRNAS-PNIIIALVGNKADL--ESKR 122 (163)
T ss_pred EE----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEECccc--cccC
Confidence 11 11122222222222211 222211 46899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+.+.++.... +.+++++||++|.|+.++.+..
T Consensus 123 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 123 QVSTEEAQEYADEN--GLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred cCCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHH
Confidence 22344455555544 5789999999999988875543
No 285
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.97 E-value=8.5e-09 Score=100.88 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=89.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+||++||.+|||||||++++++......-.|.+......... ....+.+|||+|...... +. ...++.+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~----l~---~~~~~~~d 74 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN----VR---PLAYPDSD 74 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHH----Hh---HHhccCCC
Confidence 589999999999999999999765322212221111110011 123588999999753221 11 12468999
Q ss_pred EEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcCC---------CCCccHHHHHHHh
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKMG---------PKKTDEGEKKMLL 238 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~~---------~~~~~~~~l~~l~ 238 (561)
++++|+|.+..+ .++.+ ..+..++...... |+||+|+..... .......+-..+.
T Consensus 75 ~illvfdis~~~----------Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 75 AVLICFDISRPE----------TLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred EEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 999999876322 22222 2222223222111 899999964311 0011122223333
Q ss_pred hhcCCCcEEEEEccCCC-CHHHHHHHHHhhc
Q psy17315 239 GRVGTNLKVGIVGVPNV-GKSTFFNVLTKRA 268 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~-Gks~l~~~l~~~~ 268 (561)
...+....+.+|++++. |+..+|.......
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 33333467889999988 5999999988764
No 286
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.97 E-value=1.7e-09 Score=99.33 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=84.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+|||+|++.+....+.....+.+.... ....+.. ....+.+|||+|. +.+..+...+......++..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~-~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASF-FQKTVNIGGKRIDLAIWDTAGQ-ERYHALGPIYYRDADGAILV 79 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeE-EEEEEEECCEEEEEEEEECCch-HHHHHhhHHHhccCCEEEEE
Confidence 689999999999999999998865433222211111 0011211 2235889999994 33444444433222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..++.+ +..... ..+|+++|+||+|. .....
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piiiv~nK~D~--~~~~~ 122 (162)
T cd04123 80 Y----------------DITDADSFQKVKKWIKE------------------LKQMRG-NNISLVIVGNKIDL--ERQRV 122 (162)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEECccc--ccccC
Confidence 1 11222333322222211 221211 26899999999954 32122
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+.+.++.... +.+++++||+++.|+.++.+..
T Consensus 123 ~~~~~~~~~~~~~--~~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 123 VSKSEAEEYAKSV--GAKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred CCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 2234444554443 6778999999999998875543
No 287
>PRK12288 GTPase RsgA; Reviewed
Probab=98.96 E-value=5.4e-10 Score=116.18 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=65.9
Q ss_pred cCCCChH---HHHHHHHHHHhcCCCc--cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-
Q psy17315 47 GDGDGPK---APKRRKQHLSDKLRPK--ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS- 120 (561)
Q Consensus 47 ~DL~~~~---~~~~w~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~- 120 (561)
+||++.. ....|++.++..+..+ +++..+.+....... .. ...++++|.||||||||||+|.+..
T Consensus 160 ~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~----L~-----~ki~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 160 IDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAA----LT-----GRISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred ccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHH----Hh-----hCCEEEECCCCCCHHHHHHHhccccc
Confidence 9999754 3677888887777655 566666554331111 11 1247999999999999999999876
Q ss_pred CcccCCCc-------ccccCccccccCCeEEEEeCCCcccCC
Q psy17315 121 AAAENFPF-------CTIDPNENNKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 121 ~~~~~~~~-------~T~~~~~~~~~~~~i~l~DtpG~~~~~ 155 (561)
..++..++ ||+.... ...+.+..|+||||+....
T Consensus 231 ~~t~~is~~~~rGrHTT~~~~l-~~l~~~~~liDTPGir~~~ 271 (347)
T PRK12288 231 ILVGDVSDNSGLGQHTTTAARL-YHFPHGGDLIDSPGVREFG 271 (347)
T ss_pred eeeccccCcCCCCcCceeeEEE-EEecCCCEEEECCCCCccc
Confidence 66666665 3433221 3344456799999997543
No 288
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.96 E-value=6e-09 Score=96.22 Aligned_cols=149 Identities=20% Similarity=0.231 Sum_probs=96.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
||+++|.++||||||++++.+........|....+.... ......+.++|+||...... +. ...++++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----~~---~~~~~~~~ 73 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS----LR---DIFYRNSD 73 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH----HH---HHHHTTES
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc----cc---cccccccc
Confidence 689999999999999999998763222222111111111 11234699999999642221 11 12368899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
++++|+|.+. ...++.+..+...+...... ++||+|..+..... ..+...+....+ ...+
T Consensus 74 ~~ii~fd~~~----------~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~---~~~~~~~~~~~~-~~~~ 139 (162)
T PF00071_consen 74 AIIIVFDVTD----------EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS---VEEAQEFAKELG-VPYF 139 (162)
T ss_dssp EEEEEEETTB----------HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC---HHHHHHHHHHTT-SEEE
T ss_pred cccccccccc----------cccccccccccccccccccccccceeeeccccccccccch---hhHHHHHHHHhC-CEEE
Confidence 9999997653 33455566555555555442 89999998743332 233344444444 6789
Q ss_pred EEEccCCCCHHHHHHHHHhh
Q psy17315 248 GIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~ 267 (561)
.+|++++.|+.+++..+.+.
T Consensus 140 e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 140 EVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp EEBTTTTTTHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999875
No 289
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.96 E-value=1.6e-09 Score=103.56 Aligned_cols=158 Identities=11% Similarity=0.081 Sum_probs=91.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.++.+.|..|+||++|+..+....|.....+.+.........+......+.+|||+|- +.+..+...+.++..-++..+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~-e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ-EEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCc-hhhhhhhhhhccCCCEEEEEE
Confidence 5799999999999999999998876544333321111100011112245889999994 556667666655544433333
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh--
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-- 401 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-- 401 (561)
++.+.+.+..+.. |... +... ....|+++|+||.|......
T Consensus 83 ----------------dit~~~Sf~~~~~~w~~~------------------i~~~--~~~~piilvgNK~DL~~~~~~~ 126 (191)
T cd01875 83 ----------------SIASPSSYENVRHKWHPE------------------VCHH--CPNVPILLVGTKKDLRNDADTL 126 (191)
T ss_pred ----------------ECCCHHHHHHHHHHHHHH------------------HHhh--CCCCCEEEEEeChhhhcChhhH
Confidence 3444455554432 3221 1111 14689999999996421100
Q ss_pred --------ccchHHHHHHHHHhcCCC-CeEEeechhhhhhhCCCCHHHH
Q psy17315 402 --------KNKWLPKIKEWVDANDPG-ATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 --------~~~~~~~l~~~~~~~~~~-~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.....++.++++... + .+++.+||++|.|+.++.+...
T Consensus 127 ~~~~~~~~~~v~~~~~~~~a~~~--~~~~~~e~SAk~g~~v~e~f~~l~ 173 (191)
T cd01875 127 KKLKEQGQAPITPQQGGALAKQI--HAVKYLECSALNQDGVKEVFAEAV 173 (191)
T ss_pred HHHhhccCCCCCHHHHHHHHHHc--CCcEEEEeCCCCCCCHHHHHHHHH
Confidence 001122333444433 3 5799999999999888755443
No 290
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.96 E-value=7.2e-11 Score=128.28 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=94.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+++.|.||+||++|+|++++.....++++.+ |++..++ +...+.++.++|+||++..-.. ..++.+..+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGv--TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~------S~DE~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGV--TVEKKEGKLKYKGHEIEIVDLPGTYSLTAY------SEDEKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCe--eEEEEEEEEEecCceEEEEeCCCcCCCCCC------CchHHHHHH
Confidence 459999999999999999999998888888653 3455544 4556678999999998541000 000111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
++. -.+.|++..|+|+.. + +..+...-++. ..++|+++++|++|......-.
T Consensus 76 ~ll---------------~~~~D~ivnVvDAtn-----------L-eRnLyltlQLl-E~g~p~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 76 FLL---------------EGKPDLIVNVVDATN-----------L-ERNLYLTLQLL-ELGIPMILALNMIDEAKKRGIR 127 (653)
T ss_pred HHh---------------cCCCCEEEEEcccch-----------H-HHHHHHHHHHH-HcCCCeEEEeccHhhHHhcCCc
Confidence 100 011144444433211 1 11111111121 2589999999999654432223
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
-..+++++.+ +.|++++||++|.|++++.++..
T Consensus 128 ID~~~L~~~L-----GvPVv~tvA~~g~G~~~l~~~i~ 160 (653)
T COG0370 128 IDIEKLSKLL-----GVPVVPTVAKRGEGLEELKRAII 160 (653)
T ss_pred ccHHHHHHHh-----CCCEEEEEeecCCCHHHHHHHHH
Confidence 3456666654 89999999999999988866543
No 291
>KOG0075|consensus
Probab=98.96 E-value=5.7e-10 Score=98.19 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=96.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
...+.+.++|+-|+|||||+|.+.... -.+.+..|...... ......+.++|.||...... .+-...|.
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~--tkgnvtiklwD~gGq~rfrs-------mWerycR~ 88 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV--TKGNVTIKLWDLGGQPRFRS-------MWERYCRG 88 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe--ccCceEEEEEecCCCccHHH-------HHHHHhhc
Confidence 345789999999999999999987644 23344333322111 12344799999999854442 34455799
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----------hhccccccCcCCCCCccHHHHHHH---h
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----------VDAKADSKKKMGPKKTDEGEKKML---L 238 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----------v~NK~D~~~~~~~~~~~~~~l~~l---~ 238 (561)
+++|+++||+.+++ ++....++|..+... ++||.|++.+.+.. +...++ .
T Consensus 89 v~aivY~VDaad~~-------------k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~----~li~rmgL~s 151 (186)
T KOG0075|consen 89 VSAIVYVVDAADPD-------------KLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI----ALIERMGLSS 151 (186)
T ss_pred CcEEEEEeecCCcc-------------cchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH----HHHHHhCccc
Confidence 99999999987533 222333344333222 79999998654421 111111 1
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
-..++-...++|++...+++-+..||.+.
T Consensus 152 itdREvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 152 ITDREVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred cccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 12345567999999999999999999886
No 292
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.95 E-value=1.9e-09 Score=99.43 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=84.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
++.+.|.+|+|||+|++.+.+..+..... ++.+..-....+.. ....+.+|||+|.++ +..+.....+....++..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLA-ATIGVDFKVKTLTVDGKKVKLAIWDTAGQER-FRTLTSSYYRGAQGVILV 79 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccC-CcccceEEEEEEEECCEEEEEEEEECCCchh-hhhhhHHHhCCCCEEEEE
Confidence 68999999999999999999876543322 22222101111212 224688999999543 333333332222211111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+.+.+..+..++.. +..+......|+++|+||+|.. . ..
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~~~iv~nK~D~~--~-~~ 122 (161)
T cd01863 80 Y----------------DVTRRDTFTNLETWLNE------------------LETYSTNNDIVKMLVGNKIDKE--N-RE 122 (161)
T ss_pred E----------------ECCCHHHHHhHHHHHHH------------------HHHhCCCCCCcEEEEEECCccc--c-cc
Confidence 1 11222222222222211 2222222478999999999543 2 22
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...++..++.... +.+++++||++|.|+.++.++.
T Consensus 123 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 123 VTREEGLKFARKH--NMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred cCHHHHHHHHHHc--CCEEEEEecCCCCCHHHHHHHH
Confidence 2334455555543 6789999999999988875543
No 293
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.95 E-value=2e-09 Score=99.14 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=83.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+|||+|++.+.+..+.....+. .+.|... .+...+ ..+.+|||||..+ +..+.....+...-++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~~~~~~~~~~ii~ 78 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQAT--IGIDFLSKTMYLEDKTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVV 78 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCc--eeeeEEEEEEEECCEEEEEEEEECCCcHH-HHHHHHHHhccCCEEEE
Confidence 6899999999999999999988655432222 1122221 122222 3578999999544 43333333322221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. ....
T Consensus 79 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~~iilv~nK~D~--~~~~ 121 (161)
T cd01861 79 VY----------------DITNRQSFDNTDKWIDD------------------VRDERG-NDVIIVLVGNKTDL--SDKR 121 (161)
T ss_pred EE----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCEEEEEEEChhc--cccC
Confidence 11 11222222222222221 111111 25899999999965 2222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+......... +.+++++||+++.|++++.+..
T Consensus 122 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 122 QVSTEEGEKKAKEL--NAMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred ccCHHHHHHHHHHh--CCEEEEEeCCCCCCHHHHHHHH
Confidence 33344444444443 5789999999999988875543
No 294
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.95 E-value=2e-09 Score=105.92 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=97.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|..|+||++|++.+.+..|.....+.+.........+......+.+|||+| ++.+..+...+.++...++..+
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG-~e~~~~~~~~~~~~ad~vIlVy 92 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSG-SPYYDNVRPLCYSDSDAVLLCF 92 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCC-chhhHHHHHHHcCCCcEEEEEE
Confidence 579999999999999999999887765544333211100001111224688999999 4556666666655554443333
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh----
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI---- 399 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~---- 399 (561)
++++.+.+..+ ..|..+ +.... ...|+|+|+||+|....
T Consensus 93 ----------------Dit~~~Sf~~~~~~w~~~------------------i~~~~--~~~piilVgNK~DL~~~~~~~ 136 (232)
T cd04174 93 ----------------DISRPETVDSALKKWKAE------------------IMDYC--PSTRILLIGCKTDLRTDLSTL 136 (232)
T ss_pred ----------------ECCChHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECcccccccchh
Confidence 33444555443 233322 11111 36799999999964210
Q ss_pred ------hhccchHHHHHHHHHhcCCCC-eEEeechhhhh-hhCCCCHHHHHHHHH
Q psy17315 400 ------KKKNKWLPKIKEWVDANDPGA-TIIPFSGVFEH-QLVDMPDDERQRYLD 446 (561)
Q Consensus 400 ------~~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~-gl~~L~~~~~~~~~~ 446 (561)
.......++.+++++.. +. +++.+||++|. |+.++.......+++
T Consensus 137 ~~l~~~~~~~Vs~~e~~~~a~~~--~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 137 MELSNQKQAPISYEQGCALAKQL--GAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred hhhccccCCcCCHHHHHHHHHHc--CCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 00122344566666655 55 58999999997 798887666555444
No 295
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.95 E-value=1.9e-09 Score=102.29 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=93.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.++.+.|..|+||++|++.+....|.....+.+.........+......+.+|||+|- +.+..+...+.++...++..+
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~-e~~~~~~~~~~~~ad~~ilvy 84 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS-PYYDNVRPLSYPDSDAVLICF 84 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCc-hhhHhhhhhhcCCCCEEEEEE
Confidence 5799999999999999999999877554433321111000011112246889999994 446666665554444333333
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh----
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI---- 399 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~---- 399 (561)
++.+.+.+..+ ..|... +.... ...|+++|+||+|....
T Consensus 85 ----------------Dit~~~Sf~~~~~~w~~~------------------i~~~~--~~~piilVgNK~DL~~~~~~~ 128 (182)
T cd04172 85 ----------------DISRPETLDSVLKKWKGE------------------IQEFC--PNTKMLLVGCKSDLRTDLTTL 128 (182)
T ss_pred ----------------ECCCHHHHHHHHHHHHHH------------------HHHHC--CCCCEEEEeEChhhhcChhhH
Confidence 34444555554 233322 22221 36899999999964210
Q ss_pred ------hhccchHHHHHHHHHhcCCC-CeEEeechhhhhh-hCCCCHH
Q psy17315 400 ------KKKNKWLPKIKEWVDANDPG-ATIIPFSGVFEHQ-LVDMPDD 439 (561)
Q Consensus 400 ------~~~~~~~~~l~~~~~~~~~~-~~vi~iSA~~~~g-l~~L~~~ 439 (561)
.......++..++++.. + .+++.+||+++.| +.++...
T Consensus 129 ~~~~~~~~~~v~~~~~~~~a~~~--~~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 129 VELSNHRQTPVSYDQGANMAKQI--GAATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHc--CCCEEEECCcCCCCCCHHHHHHH
Confidence 00112344556666654 5 4899999999998 8887544
No 296
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.94 E-value=2.5e-09 Score=101.73 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=88.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+|||+|++.+.+..+.....+++..+.. ...+... ...+.+|||+|.++ ...+.....+....++..
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~i~Dt~g~~~-~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFK-IKTVYIENKIIKLQIWDTNGQER-FRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEE-EEEEEECCEEEEEEEEECCCcHH-HHhhHHHHccCCCEEEEE
Confidence 6899999999999999999988664433332211111 1122222 23567899999543 444444433333222221
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..|+.. +..+.. ...|+++|+||+|. .+...
T Consensus 80 ~----------------d~~~~~s~~~i~~~~~~------------------i~~~~~-~~~~~ivv~nK~Dl--~~~~~ 122 (188)
T cd04125 80 Y----------------DVTDQESFENLKFWINE------------------INRYAR-ENVIKVIVANKSDL--VNNKV 122 (188)
T ss_pred E----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEECCCC--ccccc
Confidence 1 22333444444444332 111111 35799999999954 32122
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
...+...++.... +.+++.+||+++.|+.++.+...+..
T Consensus 123 v~~~~~~~~~~~~--~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 123 VDSNIAKSFCDSL--NIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred CCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2223333444433 56899999999999988866554443
No 297
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.94 E-value=8.9e-10 Score=104.01 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=93.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.++.+.|.+|+|||+|+..+....|.....+++.........+......+.+|||+|. +.+..+...+.++....+..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~-~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCC-ccccccchhhcCCCcEEEEEE
Confidence 3689999999999999999999887655444432221110111112246789999995 445555555544444333333
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh--
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-- 401 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-- 401 (561)
++++.+.+..+ ..|+.+ +.... ...|+++|+||+|......
T Consensus 81 ----------------d~~~~~Sf~~~~~~w~~~------------------i~~~~--~~~piilvgnK~Dl~~~~~~~ 124 (176)
T cd04133 81 ----------------SLISRASYENVLKKWVPE------------------LRHYA--PNVPIVLVGTKLDLRDDKQYL 124 (176)
T ss_pred ----------------EcCCHHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEeChhhccChhhh
Confidence 33444555544 234332 22121 3689999999996421100
Q ss_pred ------ccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHHH
Q psy17315 402 ------KNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ------~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....++..+++... +. +++.+||++|.|++++.+...+
T Consensus 125 ~~~~~~~~v~~~~~~~~a~~~--~~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 125 ADHPGASPITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred hhccCCCCCCHHHHHHHHHHc--CCCEEEECCCCcccCHHHHHHHHHH
Confidence 012344455555544 44 6899999999999887555443
No 298
>PRK00049 elongation factor Tu; Reviewed
Probab=98.94 E-value=2.4e-09 Score=113.92 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=93.7
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcCCC-------c---------ccCCCcccccCccccc--cCCeEEEEeCCCccc
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKSSA-------A---------AENFPFCTIDPNENNK--VPAFLNVVDIAGLVK 153 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~~~-------~---------~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~ 153 (561)
.....++|+++|.+++|||||+++|++... . .....|+|.+...... .+.++.++||||...
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 345568899999999999999999986310 0 1114677776543222 245789999999742
Q ss_pred CCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCc
Q psy17315 154 GAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKT 229 (561)
Q Consensus 154 ~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~ 229 (561)
+.......+..+|++++|+|+...- .....+ +...+.....+ +.||+|+.+....-..
T Consensus 88 -------f~~~~~~~~~~aD~~llVVDa~~g~-------~~qt~~----~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~ 149 (396)
T PRK00049 88 -------YVKNMITGAAQMDGAILVVSAADGP-------MPQTRE----HILLARQVGVPYIVVFLNKCDMVDDEELLEL 149 (396)
T ss_pred -------HHHHHHhhhccCCEEEEEEECCCCC-------chHHHH----HHHHHHHcCCCEEEEEEeecCCcchHHHHHH
Confidence 2223345568899999999875210 000111 11223333333 4799999742111011
Q ss_pred cHHHHHHHhhhc----CCCcEEEEEccCCC----------CHHHHHHHHHhh
Q psy17315 230 DEGEKKMLLGRV----GTNLKVGIVGVPNV----------GKSTFFNVLTKR 267 (561)
Q Consensus 230 ~~~~l~~l~~~~----~~~~~i~isg~~~~----------Gks~l~~~l~~~ 267 (561)
....+..++... ...+.+++||.+|. |..+|+++|.+.
T Consensus 150 ~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 112233343332 23567999999875 567888888764
No 299
>PRK04213 GTP-binding protein; Provisional
Probab=98.94 E-value=1.1e-09 Score=105.45 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=37.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
...|.+.|.+|+|||+|+|.+++..+..+.. +|++.....+.. ..+.+|||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~---~~~t~~~~~~~~--~~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKR---PGVTRKPNHYDW--GDFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCC---CceeeCceEEee--cceEEEeCCcc
Confidence 4689999999999999999999876543332 344311112222 26889999995
No 300
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.93 E-value=1.9e-09 Score=105.29 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=90.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+||++|++.+....|.. ..+.+.+.. ....+....+.+|||+|.+ .+..+...+.+....++..+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~---~~~~~~~~~l~iwDt~G~e-~~~~l~~~~~~~ad~~IlV~- 75 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAF---YLKQWGPYNISIWDTAGRE-QFHGLGSMYCRGAAAVILTY- 75 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEE---EEEEeeEEEEEEEeCCCcc-cchhhHHHHhccCCEEEEEE-
Confidence 58899999999999999999887643 222222211 0011123457899999954 45555555544333322222
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh-----
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK----- 400 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~----- 400 (561)
++.+.+.+..+..++.. +.... ....|+|+|+||+|.....
T Consensus 76 ---------------Dvt~~~Sf~~l~~~~~~------------------l~~~~-~~~~piIlVgNK~DL~~~~~~~~~ 121 (220)
T cd04126 76 ---------------DVSNVQSLEELEDRFLG------------------LTDTA-NEDCLFAVVGNKLDLTEEGALAGQ 121 (220)
T ss_pred ---------------ECCCHHHHHHHHHHHHH------------------HHHhc-CCCCcEEEEEECcccccccccccc
Confidence 22333444433332221 11111 1357999999999642100
Q ss_pred ------------hccchHHHHHHHHHhcCC------------CCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 ------------KKNKWLPKIKEWVDANDP------------GATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ------------~~~~~~~~l~~~~~~~~~------------~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......++..+++++... ..+++.+||++|.|+.++.....+..+
T Consensus 122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 112223455555554310 157899999999999998776655443
No 301
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.93 E-value=3.3e-09 Score=98.80 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=86.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+|||+|++.+.+..+.....+.+ +. +.. ..+...+ ..+.+||+||... +..+...+.+....++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~~i~ 78 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GA-DFLTKEVTVDDKLVTLQIWDTAGQER-FQSLGVAFYRGADCCVL 78 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCcc-ce-EEEEEEEEECCEEEEEEEEeCCChHH-HHhHHHHHhcCCCEEEE
Confidence 68999999999999999999876543322221 21 111 1222222 3567999999543 44444444333322211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh--hccCCceEEEecCChhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN--LLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~--~l~~kP~iiv~NK~D~d~~~ 400 (561)
-+ ++.+...+..+..|... .+.... ....+|+++|+||+|. ..
T Consensus 79 v~----------------d~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~p~ilv~nK~Dl--~~ 123 (172)
T cd01862 79 VY----------------DVTNPKSFESLDSWRDE-----------------FLIQASPSDPENFPFVVLGNKIDL--EE 123 (172)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH-----------------HHHhcCccCCCCceEEEEEECccc--cc
Confidence 11 11112222222222111 111110 0136899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
......+.++.+++.. ...+++++||++|.|+.++.+......
T Consensus 124 ~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 124 KRQVSTKKAQQWCQSN-GNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred ccccCHHHHHHHHHHc-CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 1222345555555544 236899999999999988865554443
No 302
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.93 E-value=1.8e-09 Score=101.25 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=82.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..++.+.|.+|+|||+|++.+.+..+ ..+.++.|.. ...+...+..+.+|||||.+. +..+...+.+....++..
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~--~~~~~t~g~~--~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDI--DTISPTLGFQ--IKTLEYEGYKLNIWDVGGQKT-LRPYWRNYFESTDALIWV 88 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC--CCcCCccccc--eEEEEECCEEEEEEECCCCHH-HHHHHHHHhCCCCEEEEE
Confidence 46799999999999999999998743 2232222321 111222345688999999643 444444443333222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+.+.+..+..++.. ++. .......|+++|+||+|. .. .
T Consensus 89 ~----------------d~~~~~s~~~~~~~~~~-----------------~~~-~~~~~~~p~iiv~nK~Dl--~~--~ 130 (173)
T cd04154 89 V----------------DSSDRLRLDDCKRELKE-----------------LLQ-EERLAGATLLILANKQDL--PG--A 130 (173)
T ss_pred E----------------ECCCHHHHHHHHHHHHH-----------------HHh-ChhhcCCCEEEEEECccc--cc--C
Confidence 1 11111222222222211 111 111247899999999954 22 1
Q ss_pred chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 404 KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 404 ~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
...+++.+++... ....+++++||++|.|++++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 131 LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence 1234454444221 1246899999999999887743
No 303
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.93 E-value=2.2e-09 Score=106.93 Aligned_cols=162 Identities=12% Similarity=0.123 Sum_probs=89.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|..|+||++|++.+.+..|.....+.+ + |... .+...+ ..+.+|||+|.+ .+..+...+.....-++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi-~--d~~~k~~~i~~~~~~l~I~Dt~G~~-~~~~~~~~~~~~ad~iIl 77 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-E--DFHRKLYSIRGEVYQLDILDTSGNH-PFPAMRRLSILTGDVFIL 77 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh-h--HhEEEEEEECCEEEEEEEEECCCCh-hhhHHHHHHhccCCEEEE
Confidence 58899999999999999998876654322221 1 1111 122222 457899999954 344444433322222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHH--HhhhhccCCceEEEecCChhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHL--NKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l--~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
.+ ++.+.+.+..+..++.+ .. +.... ........+|+|+|+||+|.. .
T Consensus 78 Vf----------------dv~~~~Sf~~i~~~~~~--I~----------~~k~~~~~~~~~~~~~piIivgNK~Dl~--~ 127 (247)
T cd04143 78 VF----------------SLDNRESFEEVCRLREQ--IL----------ETKSCLKNKTKENVKIPMVICGNKADRD--F 127 (247)
T ss_pred EE----------------eCCCHHHHHHHHHHHHH--HH----------HhhcccccccccCCCCcEEEEEECccch--h
Confidence 11 23334555544444332 00 00000 000011368999999999643 2
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+++.+++... ...+++++||+++.|++++.+....
T Consensus 128 ~~~v~~~ei~~~~~~~-~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 128 PREVQRDEVEQLVGGD-ENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred ccccCHHHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 1233445566655432 1467999999999999988666544
No 304
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.93 E-value=4.3e-10 Score=104.53 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=38.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHI 302 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi 302 (561)
++|.+.|.+|+|||+|++++.+..+..+.+ ++++ ++.. .+...+..+.+|||||+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~ 57 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPY---PFTTKSLFVGHFDYKYLRWQVIDTPGL 57 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCC---CCcccceeEEEEccCceEEEEEECCCc
Confidence 468999999999999999999986543333 3332 2222 22333457899999996
No 305
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.93 E-value=1.6e-09 Score=102.13 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=85.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.++.+.|.+|+||++|++.+....|.....+.+..... ..+...+ ..+.+|||+|.+ .+..+...+.+....++.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~--~~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA--VTVMIGGEPYTLGLFDTAGQE-DYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE--EEEEECCEEEEEEEEECCCcc-chhhhhhhhcccCCEEEE
Confidence 46899999999999999999988765443332211110 1122222 457899999954 355555444433332222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
.+ ++.+.+.+..+.. |+.. +.... ...|+++|+||+|......
T Consensus 79 v~----------------d~~~~~s~~~~~~~w~~~------------------i~~~~--~~~piilvgnK~Dl~~~~~ 122 (175)
T cd01874 79 CF----------------SVVSPSSFENVKEKWVPE------------------ITHHC--PKTPFLLVGTQIDLRDDPS 122 (175)
T ss_pred EE----------------ECCCHHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECHhhhhChh
Confidence 22 2233334433322 2211 11111 3689999999996421100
Q ss_pred ----------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 ----------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ----------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....++..++++.. ....++++||++|.|+.++.+..
T Consensus 123 ~~~~l~~~~~~~v~~~~~~~~a~~~-~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 123 TIEKLAKNKQKPITPETGEKLARDL-KAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred hHHHhhhccCCCcCHHHHHHHHHHh-CCcEEEEecCCCCCCHHHHHHHH
Confidence 001122233343332 13579999999999998885544
No 306
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.92 E-value=1.9e-09 Score=107.25 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=60.6
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc---cccccccc
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE---GQGLGNAF 165 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~---~~~~~~~~ 165 (561)
....+++|+++|.+|||||||+|+|.|.. ..++.++++|...+... ..+..+.+|||||+...... ........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 44567899999999999999999999988 67777877777655432 23457999999999755321 11111111
Q ss_pred cccc--ccCCEEEEEec
Q psy17315 166 LSHI--SACDAIFHLCK 180 (561)
Q Consensus 166 l~~i--~~~D~il~VvD 180 (561)
...+ ...|++++|..
T Consensus 107 ~~~l~~~~idvIL~V~r 123 (249)
T cd01853 107 KRYLKKKTPDVVLYVDR 123 (249)
T ss_pred HHHHhccCCCEEEEEEc
Confidence 1122 25688888863
No 307
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.92 E-value=2.7e-09 Score=104.58 Aligned_cols=157 Identities=14% Similarity=0.176 Sum_probs=84.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCC-cc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhh-CCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEG-EV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQR-GDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~g-t~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~-~~~~~~~ 322 (561)
+|.+.|.+|+||++|++.+....+....+.++.+ .. .....+......+.+|||+|.+. .+...... ....++.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~---~~~~~~~~~~ad~iil 78 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM---WTEDSCMQYQGDAFVV 78 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch---HHHhHHhhcCCCEEEE
Confidence 6899999999999999999876554233333222 11 01011222335688999999752 12222221 1211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +........+|+|+|+||+|. ....
T Consensus 79 V~----------------d~td~~S~~~~~~~~~~------------------l~~~~~~~~~piilV~NK~Dl--~~~~ 122 (221)
T cd04148 79 VY----------------SVTDRSSFERASELRIQ------------------LRRNRQLEDRPIILVGNKSDL--ARSR 122 (221)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEEChhc--cccc
Confidence 11 12222333333222221 222211246899999999954 2212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+...++.... +.+++++||+++.|++++.+.....
T Consensus 123 ~v~~~~~~~~a~~~--~~~~~e~SA~~~~gv~~l~~~l~~~ 161 (221)
T cd04148 123 EVSVQEGRACAVVF--DCKFIETSAGLQHNVDELLEGIVRQ 161 (221)
T ss_pred eecHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 22233333444433 5678999999999998886655443
No 308
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.92 E-value=3.8e-10 Score=112.68 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=98.4
Q ss_pred HHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHH----HHHH
Q psy17315 234 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKE----INKI 309 (561)
Q Consensus 234 l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~----~~~l 309 (561)
+.++-......+.+.++|.||+|||||++.++...++.+.|||++-.+ .+-.++....+++++||||+-.+ .+.+
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i-~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGI-HVGHFERGYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccce-eEeeeecCCceEEEecCCcccCCChHHhcHH
Confidence 344444556788999999999999999999999999999999965332 11123444568999999998321 2223
Q ss_pred HHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEE
Q psy17315 310 EKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIY 389 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ii 389 (561)
+++.. .+ +. |+. ++++++.|..+. .. -..+++..++++...+-.+|+++
T Consensus 237 E~qAi-------~A-L~--------------hl~--~~IlF~~D~Se~------cg-y~lE~Q~~L~~eIk~~f~~p~v~ 285 (346)
T COG1084 237 ERQAI-------LA-LR--------------HLA--GVILFLFDPSET------CG-YSLEEQISLLEEIKELFKAPIVV 285 (346)
T ss_pred HHHHH-------HH-HH--------------Hhc--CeEEEEEcCccc------cC-CCHHHHHHHHHHHHHhcCCCeEE
Confidence 32221 00 00 000 222222221111 11 12244566666666555689999
Q ss_pred EecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 390 LVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 390 v~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
|+||+|. .+ .+.++++...+.... ....+.+|+..+.+++.+.++
T Consensus 286 V~nK~D~--~~--~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~ 330 (346)
T COG1084 286 VINKIDI--AD--EEKLEEIEASVLEEG-GEEPLKISATKGCGLDKLREE 330 (346)
T ss_pred EEecccc--cc--hhHHHHHHHHHHhhc-cccccceeeeehhhHHHHHHH
Confidence 9999953 31 233444443333221 233566788888887666443
No 309
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.92 E-value=3.2e-09 Score=100.76 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=86.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
++.+.|..|+||++|++.+....|.....+.+ |. ... ..+...+ ..+.+|||+|-+ .+..+...+.+...-++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~-g~~~~~-~~i~~~~~~~~l~iwDt~G~~-~~~~~~~~~~~~a~~iil 78 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTL-GVNFME-KTISIRGTEITFSIWDLGGQR-EFINMLPLVCNDAVAILF 78 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc-ceEEEE-EEEEECCEEEEEEEEeCCCch-hHHHhhHHHCcCCCEEEE
Confidence 68899999999999999998887654433322 21 100 1122222 457899999954 344444444433322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh--h-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY--I- 399 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~--~- 399 (561)
.+ ++.+.+.+..+..|+.. +..... ...| ++|+||+|... .
T Consensus 79 v~----------------D~t~~~s~~~i~~~~~~------------------~~~~~~-~~~p-ilVgnK~Dl~~~~~~ 122 (182)
T cd04128 79 MF----------------DLTRKSTLNSIKEWYRQ------------------ARGFNK-TAIP-ILVGTKYDLFADLPP 122 (182)
T ss_pred EE----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCE-EEEEEchhccccccc
Confidence 22 23333444444444332 111111 2355 67899995410 0
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.......+...++++.. +.+++++||++|.|++++.+...+
T Consensus 123 ~~~~~~~~~~~~~a~~~--~~~~~e~SAk~g~~v~~lf~~l~~ 163 (182)
T cd04128 123 EEQEEITKQARKYAKAM--KAPLIFCSTSHSINVQKIFKIVLA 163 (182)
T ss_pred hhhhhhHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 01112234444555544 578999999999999888655443
No 310
>KOG0094|consensus
Probab=98.91 E-value=1.9e-09 Score=99.66 Aligned_cols=157 Identities=12% Similarity=0.103 Sum_probs=104.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-ch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|..++||++|++.+.-..|.....+++. +|-.. .+ +-....|++|||+| ++++..+...|++...-++
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIG--iDFlskt~~l~d~~vrLQlWDTAG-QERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIG--IDFLSKTMYLEDRTVRLQLWDTAG-QERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceee--eEEEEEEEEEcCcEEEEEEEeccc-HHHHhhhhhhhccCCeEEE
Confidence 5799999999999999999999877665544322 11111 12 22234689999999 6778888888887765555
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++++...+++...|+++. .. ...-.+.-+++|.||. |+.+.
T Consensus 100 iVy----------------Dit~~~Sfe~t~kWi~dv-----------------~~-e~gs~~viI~LVGnKt--DL~dk 143 (221)
T KOG0094|consen 100 IVY----------------DITDRNSFENTSKWIEDV-----------------RR-ERGSDDVIIFLVGNKT--DLSDK 143 (221)
T ss_pred EEE----------------eccccchHHHHHHHHHHH-----------------Hh-ccCCCceEEEEEcccc--cccch
Confidence 544 567778888888888761 11 1110235567899999 55543
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....++=...+++. +..++.+||+.|.|+.+|...+..
T Consensus 144 rqvs~eEg~~kAkel--~a~f~etsak~g~NVk~lFrrIaa 182 (221)
T KOG0094|consen 144 RQVSIEEGERKAKEL--NAEFIETSAKAGENVKQLFRRIAA 182 (221)
T ss_pred hhhhHHHHHHHHHHh--CcEEEEecccCCCCHHHHHHHHHH
Confidence 333333333334444 678999999999999877555443
No 311
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.91 E-value=4.4e-09 Score=102.26 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=90.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh---hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII---NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
.+|.+.|.+|+||++|++.+.+..+.....+.+ | .|.. ..+... ...+.+|||+|.+ .+..+...+.+....+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti-~-~d~~~~~i~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~~d~i 79 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTV-G-VDFFSRLIEIEPGVRIKLQLWDTAGQE-RFRSITRSYYRNSVGV 79 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcee-c-eEEEEEEEEECCCCEEEEEEEeCCcch-hHHHHHHHHhcCCcEE
Confidence 579999999999999999999876543322221 1 1111 112111 2357899999954 4555555554333322
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..|+.. +.........|+++|+||+|. ..
T Consensus 80 ilv~----------------D~~~~~Sf~~l~~~~~~------------------i~~~~~~~~~~iilvgNK~Dl--~~ 123 (211)
T cd04111 80 LLVF----------------DITNRESFEHVHDWLEE------------------ARSHIQPHRPVFILVGHKCDL--ES 123 (211)
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCeEEEEEEcccc--cc
Confidence 2222 23334444444444332 111111134678999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+...++.+.. +.+++.+||++|.|+.++.+...+
T Consensus 124 ~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 124 QRQVTREEAEKLAKDL--GMKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred ccccCHHHHHHHHHHh--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 2222334445555544 578999999999999888665544
No 312
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.91 E-value=1.9e-09 Score=109.75 Aligned_cols=131 Identities=16% Similarity=0.096 Sum_probs=80.1
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhh-hcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQIL-ISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~-~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
+.+|.|.|++.| ..+. ..++++...+ ..++|.+ +||+++.....|..++.+.+..+ +++..+.+.
T Consensus 80 D~vllV~d~~~p------~~s~-~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 80 DQLVIVVSLNEP------FFNP-RLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred CEEEEEEEcCCC------CCCH-HHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 557999999999 4111 1334321111 1344544 99998766667777666656554 566665543
Q ss_pred CCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCC-------CcccccCccccccCCeEEEEeCCC
Q psy17315 79 KKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENF-------PFCTIDPNENNKVPAFLNVVDIAG 150 (561)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~-------~~~T~~~~~~~~~~~~i~l~DtpG 150 (561)
..... .. .+..++++|.+|||||||+|+|.+.. ..++.. +++|+.... ...+....++||||
T Consensus 153 ~~L~~--------~L-~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~-~~~~~~~~liDtPG 222 (287)
T cd01854 153 DELRE--------YL-KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL-FPLPGGGLLIDTPG 222 (287)
T ss_pred HHHHh--------hh-ccceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE-EEcCCCCEEEECCC
Confidence 22111 11 12579999999999999999999865 333322 235555432 23333568999999
Q ss_pred cccC
Q psy17315 151 LVKG 154 (561)
Q Consensus 151 ~~~~ 154 (561)
+.+.
T Consensus 223 ~~~~ 226 (287)
T cd01854 223 FREF 226 (287)
T ss_pred CCcc
Confidence 9653
No 313
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.91 E-value=1.5e-09 Score=101.62 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=81.5
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
|.+.|.+|+|||+|++.+.+..+.....+.+..... ..+... ..++.+|||+|.++ +..+.....+...-++..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS--ADVEVDGKPVELGLWDTAGQED-YDRLRPLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee--EEEEECCEEEEEEEEECCCCcc-cchhchhhcCCCCEEEEEE
Confidence 478999999999999999998664433222111110 111111 23588999999543 3333333322222211111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh--
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-- 401 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-- 401 (561)
++++.+.+..+.. |+.. +.... ..+|+++|+||+|......
T Consensus 78 ----------------d~~~~~s~~~~~~~~~~~------------------i~~~~--~~~piilv~nK~Dl~~~~~~~ 121 (174)
T smart00174 78 ----------------SVDSPASFENVKEKWYPE------------------VKHFC--PNTPIILVGTKLDLREDKSTL 121 (174)
T ss_pred ----------------ECCCHHHHHHHHHHHHHH------------------HHhhC--CCCCEEEEecChhhhhChhhh
Confidence 1222233332221 1111 11111 4799999999996532100
Q ss_pred --------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 402 --------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 --------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.....++..++++.. ...+++++||+++.|+.++.+...
T Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~l~ 168 (174)
T smart00174 122 RELSKQKQEPVTYEQGEALAKRI-GAVKYLECSALTQEGVREVFEEAI 168 (174)
T ss_pred hhhhcccCCCccHHHHHHHHHHc-CCcEEEEecCCCCCCHHHHHHHHH
Confidence 001122333444443 124789999999999988865543
No 314
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.91 E-value=3.5e-09 Score=98.17 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=87.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
++.+.|.+|+||++|++.+....+.....+.+ |. +.. ..+... ...+.+|||+|.+ +...+...+.+....++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~l~i~D~~g~~-~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTI-GV-DFKMKTIEVDGIKVRIQIWDTAGQE-RYQTITKQYYRRAQGIFL 78 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCce-ee-EEEEEEEEECCEEEEEEEEeCCCcH-hHHhhHHHHhcCCcEEEE
Confidence 58899999999999999998876643332221 21 111 112222 2357899999954 355444444333322222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..|+.+ +.... ....|+++|.||.|. ....
T Consensus 79 v~----------------d~~~~~sf~~~~~~~~~------------------~~~~~-~~~~~iilvgnK~Dl--~~~~ 121 (161)
T cd04117 79 VY----------------DISSERSYQHIMKWVSD------------------VDEYA-PEGVQKILIGNKADE--EQKR 121 (161)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhC-CCCCeEEEEEECccc--cccc
Confidence 22 23334555555444432 11111 136899999999954 2212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....++...+.+.. +.+++++||+++.|+.++.+..
T Consensus 122 ~v~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 122 QVGDEQGNKLAKEY--GMDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred CCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 22223344444433 5788999999999988775443
No 315
>KOG0394|consensus
Probab=98.91 E-value=1.2e-09 Score=100.06 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=106.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..++.+.|.+|+||++|+|++....|....-..+.... -.+++.+.+ ..+++|||+| ++++..|.-..++++.-..
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadF-ltKev~Vd~~~vtlQiWDTAG-QERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADF-LTKEVQVDDRSVTLQIWDTAG-QERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhh-eeeEEEEcCeEEEEEEEeccc-HHHhhhcccceecCCceEE
Confidence 36799999999999999999999887665544332111 002222222 3588999999 6668777766666655443
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++...+....+-.|-.+ -+..-..... ..-|+|++.||+|.+.-.+
T Consensus 87 lvy----------------dv~~~~Sfe~L~~Wr~E--------------Fl~qa~~~~P-e~FPFVilGNKiD~~~~~~ 135 (210)
T KOG0394|consen 87 LVY----------------DVNNPKSFENLENWRKE--------------FLIQASPQDP-ETFPFVILGNKIDVDGGKS 135 (210)
T ss_pred EEe----------------ecCChhhhccHHHHHHH--------------HHHhcCCCCC-CcccEEEEcccccCCCCcc
Confidence 333 22333443333222221 1110000011 3579999999997654322
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
......+..+|+.... ++|.+.+|||...++.++.++.....++
T Consensus 136 r~VS~~~Aq~WC~s~g-nipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 136 RQVSEKKAQTWCKSKG-NIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred ceeeHHHHHHHHHhcC-CceeEEecccccccHHHHHHHHHHHHHh
Confidence 4445677788988764 7899999999999998887776655444
No 316
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.91 E-value=4.2e-09 Score=99.95 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=86.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh---hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII---NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+|||+|++.+.+..+.....+.+.... ...+... ..++.+|||+|.+ .+..+...+.+...-++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~--~~~i~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~ad~ii~ 78 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENY--VTNIQGPNGKIIELALWDTAGQE-EYDRLRPLSYPDVDVLLI 78 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeee--EEEEEecCCcEEEEEEEECCCch-hHHHHHHHhCCCCCEEEE
Confidence 689999999999999999998876544332211111 1112111 2367899999954 344454444333322221
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
.+ ++.+.+.+..+.. |+.. +... ....|+++|+||+|......
T Consensus 79 v~----------------d~~~~~s~~~~~~~~~~~------------------~~~~--~~~~piilv~nK~Dl~~~~~ 122 (187)
T cd04132 79 CY----------------AVDNPTSLDNVEDKWFPE------------------VNHF--CPGTPIMLVGLKTDLRKDKN 122 (187)
T ss_pred EE----------------ECCCHHHHHHHHHHHHHH------------------HHHh--CCCCCEEEEEeChhhhhCcc
Confidence 11 1122222222211 1111 1111 13689999999995422110
Q ss_pred --ccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 --KNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 --~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....++..+++... +. +++.+||++|.|+.++.+.....++
T Consensus 123 ~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 123 LDRKVTPAQAESVAKKQ--GAFAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred ccCCcCHHHHHHHHHHc--CCcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 011233444554443 44 7899999999999998766555443
No 317
>PLN03110 Rab GTPase; Provisional
Probab=98.91 E-value=4e-09 Score=102.94 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=89.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+||++|++.+.+..+.....+++ |. +.. ..+.. ....+.+|||+|. +++..+...+.+....+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~-g~-~~~~~~v~~~~~~~~l~l~Dt~G~-~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI-GV-EFATRTLQVEGKTVKAQIWDTAGQ-ERYRAITSAYYRGAVGA 88 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eE-EEEEEEEEECCEEEEEEEEECCCc-HHHHHHHHHHhCCCCEE
Confidence 3589999999999999999999876544333221 11 111 11211 2236889999995 44555555544433222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+...+..+..|+.. +..... ...|+++|+||+|....
T Consensus 89 ilv~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piiiv~nK~Dl~~~- 132 (216)
T PLN03110 89 LLVY----------------DITKRQTFDNVQRWLRE------------------LRDHAD-SNIVIMMAGNKSDLNHL- 132 (216)
T ss_pred EEEE----------------ECCChHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEEChhcccc-
Confidence 2211 22333344433333322 111111 36899999999964321
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....+....+.... +.+++++||+++.|++++.+....
T Consensus 133 -~~~~~~~~~~l~~~~--~~~~~e~SA~~g~~v~~lf~~l~~ 171 (216)
T PLN03110 133 -RSVAEEDGQALAEKE--GLSFLETSALEATNVEKAFQTILL 171 (216)
T ss_pred -cCCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 122223333443332 678999999999999887555433
No 318
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.91 E-value=2.5e-08 Score=95.72 Aligned_cols=150 Identities=18% Similarity=0.131 Sum_probs=84.7
Q ss_pred cEEEEEEcCCCCHHHHHH-HHhcCCC----cccCC-Cccc-ccCc------------cccccCCeEEEEeCCCcccCCcc
Q psy17315 97 LKVGIVGVPNVGKSTFFN-VLTKSSA----AAENF-PFCT-IDPN------------ENNKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin-~L~~~~~----~~~~~-~~~T-~~~~------------~~~~~~~~i~l~DtpG~~~~~~~ 157 (561)
+||+++|.+|||||||++ .+.+... -...+ |.+. .+.. ........+.+|||||....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 689999999999999996 5554321 01111 2110 0100 00011346899999998531
Q ss_pred ccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcc--h---hhccccccCcCC------
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRR--S---VDAKADSKKKMG------ 225 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~--~---v~NK~D~~~~~~------ 225 (561)
+. ...++++|++++|+|.+.++ .++.+. .+.+.+..... + |+||+|+.+...
T Consensus 80 ---~~---~~~~~~ad~iilv~d~t~~~----------Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~ 143 (195)
T cd01873 80 ---DR---RFAYGRSDVVLLCFSIASPN----------SLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRA 143 (195)
T ss_pred ---hh---cccCCCCCEEEEEEECCChh----------HHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhc
Confidence 11 12468999999999876322 223332 22223332211 1 899999864210
Q ss_pred ----------CCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 226 ----------PKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 226 ----------~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
...-...+...+.....- ..+.+|+++|.|+..+|..+.+
T Consensus 144 ~~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 144 RRPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHH
Confidence 011112222333333232 5789999999999999999875
No 319
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.90 E-value=5.7e-09 Score=99.04 Aligned_cols=161 Identities=12% Similarity=0.133 Sum_probs=84.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh---hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI---INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~---~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..++.+.|.+|+||++|++.+....+.. ..++ .|.......+.. .+..+.+|||+|.+ .+..+...+.+....+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t-~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-~~~~~~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPT-KGFNTEKIKVSLGNSKGITFHFWDVGGQE-KLRPLWKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCc-cccceeEEEeeccCCCceEEEEEECCCcH-hHHHHHHHHhccCCEE
Confidence 4679999999999999999998775432 2222 221100111211 23468899999954 3444444443333222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +..+.+.+..+..+ ...+........+|+++|+||+|.. .
T Consensus 80 i~v~----------------D~~~~~~~~~~~~~------------------~~~i~~~~~~~~~p~iiv~NK~D~~--~ 123 (183)
T cd04152 80 VFVV----------------DSVDVERMEEAKTE------------------LHKITRFSENQGVPVLVLANKQDLP--N 123 (183)
T ss_pred EEEE----------------ECCCHHHHHHHHHH------------------HHHHHhhhhcCCCcEEEEEECcCcc--c
Confidence 1111 01111111111111 1112112122478999999999642 1
Q ss_pred hccchHHHHHHHHH--hcC--CCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVD--AND--PGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~--~~~--~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
....+.+...+. ... ...+++++||+++.|++++.+.......
T Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 124 --ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred --cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 111222333222 110 1246899999999999998776655443
No 320
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.90 E-value=2.3e-09 Score=120.81 Aligned_cols=155 Identities=14% Similarity=0.017 Sum_probs=88.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-Ccc----------cCCCccccc----------------------Cccc--cc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAA----------ENFPFCTID----------------------PNEN--NK 138 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~----------~~~~~~T~~----------------------~~~~--~~ 138 (561)
+..++|+++|.+|+|||||+|+|+... ..+ +..+|+|++ .... ..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 345789999999999999999998654 211 123455433 2111 12
Q ss_pred cCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---h
Q psy17315 139 VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---V 214 (561)
Q Consensus 139 ~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v 214 (561)
.+.++.|+||||.... .......+..+|++++|+|+...- .....+.+. .+..+. .+ +
T Consensus 102 ~~~~~~liDtPG~~~f-------~~~~~~~~~~aD~~llVvda~~g~-------~~~t~e~~~----~~~~~~~~~iivv 163 (632)
T PRK05506 102 PKRKFIVADTPGHEQY-------TRNMVTGASTADLAIILVDARKGV-------LTQTRRHSF----IASLLGIRHVVLA 163 (632)
T ss_pred CCceEEEEECCChHHH-------HHHHHHHHHhCCEEEEEEECCCCc-------cccCHHHHH----HHHHhCCCeEEEE
Confidence 3347899999996421 112334578899999999875210 000001111 122222 22 7
Q ss_pred hccccccCcCCCC-CccHHHHHHHhhhc--CCCcEEEEEccCCCCHH------------HHHHHHHh
Q psy17315 215 DAKADSKKKMGPK-KTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKS------------TFFNVLTK 266 (561)
Q Consensus 215 ~NK~D~~~~~~~~-~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks------------~l~~~l~~ 266 (561)
+||+|+.+..... ......+..+.... ...+.+++||++|.|+. +|++.|..
T Consensus 164 vNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~ 230 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET 230 (632)
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc
Confidence 9999997421100 00111222222222 23468999999999986 57766654
No 321
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.90 E-value=9.1e-10 Score=105.22 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=82.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH---------HHHHHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE---------KEINKIEKLV 313 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~---------~~~~~l~~~~ 313 (561)
..+++.+.|.+|+|||+|++.+++..+ ...++..+|++..+.-+. .+..+.+|||||+. +.+..+...+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKN-LARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC-cccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 457899999999999999999998642 223344445442111111 23578899999962 2222222222
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
.+..... +.+..+++. . ......+..++..+. ...+|+++++||
T Consensus 101 ~~~~~~~-------------------------~~~~~v~d~------~----~~~~~~~~~i~~~l~-~~~~~~iiv~nK 144 (196)
T PRK00454 101 LRTRENL-------------------------KGVVLLIDS------R----HPLKELDLQMIEWLK-EYGIPVLIVLTK 144 (196)
T ss_pred HHhCccc-------------------------eEEEEEEec------C----CCCCHHHHHHHHHHH-HcCCcEEEEEEC
Confidence 1111000 011000000 0 011222222222222 247899999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
+|...........+.+.+.+... ..+++++||+.+.|++++.+.
T Consensus 145 ~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~Sa~~~~gi~~l~~~ 188 (196)
T PRK00454 145 ADKLKKGERKKQLKKVRKALKFG--DDEVILFSSLKKQGIDELRAA 188 (196)
T ss_pred cccCCHHHHHHHHHHHHHHHHhc--CCceEEEEcCCCCCHHHHHHH
Confidence 95421111122233454554432 467999999999998887544
No 322
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.90 E-value=2.9e-09 Score=98.86 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=77.5
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccc-c-CCcccc-ccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTH-V-EGEVNP-VRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~-~-~gt~dp-~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
|.+.|.+|+|||+|++++.+........+. . ..|+.. ...+.+.+..+.+|||||.+. +..+.....++...++..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES-LRSLWDKYYAECHAIIYV 80 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh-hHHHHHHHhCCCCEEEEE
Confidence 789999999999999999876432111111 0 011111 112333356788999999654 333333333222221111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ + ..+.+.+..+..++.. .+. .......|+++++||+|. .. .
T Consensus 81 v--------------d--~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~p~ilv~NK~D~--~~--~ 122 (167)
T cd04160 81 I--------------D--STDRERFEESKSALEK-----------------VLR-NEALEGVPLLILANKQDL--PD--A 122 (167)
T ss_pred E--------------E--CchHHHHHHHHHHHHH-----------------HHh-ChhhcCCCEEEEEEcccc--cc--C
Confidence 1 0 1111111111111111 111 111247899999999954 21 1
Q ss_pred chHHHHHHHHHhc-----CCCCeEEeechhhhhhhCCCC
Q psy17315 404 KWLPKIKEWVDAN-----DPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 404 ~~~~~l~~~~~~~-----~~~~~vi~iSA~~~~gl~~L~ 437 (561)
...+++.++++.. ....+++++||++|.|++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 161 (167)
T cd04160 123 LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGI 161 (167)
T ss_pred CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHH
Confidence 2223344443321 013579999999999987764
No 323
>KOG0084|consensus
Probab=98.89 E-value=7.5e-09 Score=96.10 Aligned_cols=154 Identities=15% Similarity=0.084 Sum_probs=102.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.-+||.++|-.|||||-|+-++.+.... ....-|+--...+.. .....+++|||+|..+.+ ..+..+.|
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr-------tit~syYR 80 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR-------TITSSYYR 80 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHh-------hhhHhhcc
Confidence 4479999999999999999999875521 111111111101101 112369999999985444 24567789
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|+.|++|.|.+. ...|+.+..+..++...... |+||||+.+......+....+.+ ..+..
T Consensus 81 ~ahGii~vyDiT~----------~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~---~~~~~ 147 (205)
T KOG0084|consen 81 GAHGIIFVYDITK----------QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFAD---ELGIP 147 (205)
T ss_pred CCCeEEEEEEccc----------HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHH---hcCCc
Confidence 9999999998763 44567776655555554333 89999999766554433333333 33334
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....||+.+.++.+.|-.|....
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ceeecccCCccCHHHHHHHHHHHH
Confidence 478999999999999998887764
No 324
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.89 E-value=3.7e-09 Score=103.40 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=90.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.++|..|+||++|++.+....+.....+.+..+..+. .+.. ....+.+|||+|.+ .+..+...+.+....+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~-~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL-DFFTNCGKIRFYCWDTAGQE-KFGGLRDGYYIHGQCA 89 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEE-EEEECCeEEEEEEEECCCch-hhhhhhHHHcccccEE
Confidence 346899999999999999999887765443332221122221 1111 22468899999954 3555554444333322
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..|+.+ +.... ...|+++|+||+|.. .
T Consensus 90 ilvf----------------D~~~~~s~~~i~~w~~~------------------i~~~~--~~~piilvgNK~Dl~--~ 131 (219)
T PLN03071 90 IIMF----------------DVTARLTYKNVPTWHRD------------------LCRVC--ENIPIVLCGNKVDVK--N 131 (219)
T ss_pred EEEE----------------eCCCHHHHHHHHHHHHH------------------HHHhC--CCCcEEEEEEchhhh--h
Confidence 2222 23334555555444433 11111 468999999999642 1
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.....+.+ ++.... +.+++.+||++|.|+.++.+...+.
T Consensus 132 -~~v~~~~~-~~~~~~--~~~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 132 -RQVKAKQV-TFHRKK--NLQYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred -ccCCHHHH-HHHHhc--CCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 11112223 333332 5678999999999988876554443
No 325
>KOG0087|consensus
Probab=98.89 E-value=3.8e-09 Score=99.02 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=108.0
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
+...++.+.|.+++|||.|+..++...|....-+++.-.. ..+.+.+.+ ...++|||+| +++++.+...+++++-.
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef-~t~t~~vd~k~vkaqIWDTAG-QERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEF-ATRTVNVDGKTVKAQIWDTAG-QERYRAITSAYYRGAVG 89 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEE-EeeceeecCcEEEEeeecccc-hhhhccccchhhcccce
Confidence 3446799999999999999999999988777665542110 001111112 2467999999 56677777777777766
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
.+..+ +|++.....+|..|+.+ |+.... ...++++|.||+| +.
T Consensus 90 AllVY----------------DITr~~Tfenv~rWL~E------------------LRdhad-~nivimLvGNK~D--L~ 132 (222)
T KOG0087|consen 90 ALLVY----------------DITRRQTFENVERWLKE------------------LRDHAD-SNIVIMLVGNKSD--LN 132 (222)
T ss_pred eEEEE----------------echhHHHHHHHHHHHHH------------------HHhcCC-CCeEEEEeecchh--hh
Confidence 55555 67777888888888876 333332 4789999999995 43
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.-.....++.+.+++.. +..++.+||..+.+++.+.+..
T Consensus 133 ~lraV~te~~k~~Ae~~--~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 133 HLRAVPTEDGKAFAEKE--GLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred hccccchhhhHhHHHhc--CceEEEecccccccHHHHHHHH
Confidence 32333445555555543 6779999999999987765443
No 326
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.88 E-value=2.8e-09 Score=99.47 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=82.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh--hhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE--IINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~--~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
++.+.|.+|+||++|++.+....+.....+...-..... .+. .....+.+|||+|.++ ...+.........-.+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL-DFHTNRGKIRFNVWDTAGQEK-FGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEE-EEEECCEEEEEEEEECCCChh-hccccHHHhcCCCEEEEE
Confidence 689999999999999999987655433222211111111 111 1224678999999643 333332222222111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..++.. +.... ...|+++|+||+|.. . ..
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~--~~~piiiv~nK~Dl~--~-~~ 120 (166)
T cd00877 80 F----------------DVTSRVTYKNVPNWHRD------------------LVRVC--GNIPIVLCGNKVDIK--D-RK 120 (166)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhC--CCCcEEEEEEchhcc--c-cc
Confidence 1 12233333333333222 22121 269999999999643 2 11
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
. ..+..++.... ..+++++||++|.|++++.+...+.
T Consensus 121 ~-~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 121 V-KAKQITFHRKK--NLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred C-CHHHHHHHHHc--CCEEEEEeCCCCCChHHHHHHHHHH
Confidence 1 12222333332 5689999999999998886655433
No 327
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.88 E-value=3.3e-09 Score=100.32 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=89.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|..|+||++|++.+.+..|.....+.+.... ...+.. ....+.+|||+|- +....+...+.++...++.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~--~~~~~~~~~~~~l~iwDt~G~-~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY--TASFEIDEQRIELSLWDTSGS-PYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE--EEEEEECCEEEEEEEEECCCc-hhhhhcchhhcCCCCEEEE
Confidence 3689999999999999999998876544333321111 011111 2245789999994 4455555554444433333
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh--
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI-- 399 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~-- 399 (561)
.+ ++.+.+.+..+ ..|... +.... ...|+++|+||+|....
T Consensus 79 vf----------------dit~~~Sf~~~~~~w~~~------------------i~~~~--~~~~iilVgnK~DL~~~~~ 122 (178)
T cd04131 79 CF----------------DISRPETLDSVLKKWRGE------------------IQEFC--PNTKVLLVGCKTDLRTDLS 122 (178)
T ss_pred EE----------------ECCChhhHHHHHHHHHHH------------------HHHHC--CCCCEEEEEEChhhhcChh
Confidence 22 33444555543 233322 22222 36899999999965210
Q ss_pred --------hhccchHHHHHHHHHhcCCCC-eEEeechhhhhh-hCCCCHHH
Q psy17315 400 --------KKKNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQ-LVDMPDDE 440 (561)
Q Consensus 400 --------~~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~g-l~~L~~~~ 440 (561)
.......++..++++.. +. +++.+||++|.+ +.++....
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~--~~~~~~E~SA~~~~~~v~~~F~~~ 171 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQL--GAEIYLECSAFTSEKSVRDIFHVA 171 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHh--CCCEEEECccCcCCcCHHHHHHHH
Confidence 00112234555666554 54 789999999985 87775443
No 328
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.88 E-value=5.9e-09 Score=97.46 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=79.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+||++|++.+....+.....+.. + .+.. ..+... ...+.+|||+|.++....+...+.+....++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI-G-VDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccce-e-EEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 579999999999999999998876543322221 1 1110 112222 2467899999965432233333332222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..|+.. +.........|+++|+||+|.. ..
T Consensus 81 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~iiv~nK~Dl~--~~ 124 (170)
T cd04115 81 FVY----------------DVTNMASFHSLPSWIEE------------------CEQHSLPNEVPRILVGNKCDLR--EQ 124 (170)
T ss_pred EEE----------------ECCCHHHHHhHHHHHHH------------------HHHhcCCCCCCEEEEEECccch--hh
Confidence 111 12222333333333222 1112212468999999999643 21
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhh---hhhhCCC
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVF---EHQLVDM 436 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~---~~gl~~L 436 (561)
.....+...++.... ..+++.+||++ +.++.++
T Consensus 125 ~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 125 IQVPTDLAQRFADAH--SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred cCCCHHHHHHHHHHc--CCcEEEEeccCCcCCCCHHHH
Confidence 222223333444433 57799999999 5554444
No 329
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.88 E-value=2e-09 Score=99.65 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=79.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+||++|++.+....+. ... ++.|. + ...+......+.+|||+|..+ ...+...+.++...++..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~-pt~g~-~-~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~ad~~i~v~- 75 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTI-PTIGF-N-VETVEYKNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVV- 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccC-CCCCc-c-eEEEEECCEEEEEEECCCCHh-HHHHHHHHhcCCCEEEEEE-
Confidence 6889999999999999999766553 222 21221 1 112223345688999999644 4445545444443332222
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+..+.+.+..+..++.. .+.... ....|+++++||+|.. . ...
T Consensus 76 ---------------D~~~~~s~~~~~~~~~~-----------------~~~~~~-~~~~piilv~NK~Dl~--~--~~~ 118 (159)
T cd04150 76 ---------------DSNDRERIGEAREELQR-----------------MLNEDE-LRDAVLLVFANKQDLP--N--AMS 118 (159)
T ss_pred ---------------eCCCHHHHHHHHHHHHH-----------------HHhcHH-hcCCCEEEEEECCCCC--C--CCC
Confidence 11222222222222111 111111 1368999999999542 1 111
Q ss_pred HHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 406 LPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 406 ~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+++.+.+... .....++++||++|.|++++.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 119 AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 22332222110 1134577999999999887743
No 330
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.88 E-value=2.8e-09 Score=107.46 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=53.0
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC------Cccc------------CCCcccccCccc--cccCCeEEEEeCCCcccCCcc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS------AAAE------------NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~------~~~~------------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~ 157 (561)
.|+++|.+|+|||||+|+|.... ..+. ...|+|.+.... .+.+.++.++||||.....
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 38999999999999999996321 1111 123555543322 2345679999999976422
Q ss_pred ccccccccccccccCCEEEEEeccc
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
......++.+|++++|+|+.
T Consensus 79 -----~~~~~~l~~aD~ailVVDa~ 98 (270)
T cd01886 79 -----IEVERSLRVLDGAVAVFDAV 98 (270)
T ss_pred -----HHHHHHHHHcCEEEEEEECC
Confidence 23456678899999999876
No 331
>PLN03108 Rab family protein; Provisional
Probab=98.88 E-value=7.7e-09 Score=100.47 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=87.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+++..+.....+++..+... ..+.+. ...+.+|||+|.+. +..+...+.+....++.
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~-~~i~~~~~~i~l~l~Dt~G~~~-~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-RMITIDNKPIKLQIWDTAGQES-FRSITRSYYRGAAGALL 84 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEE-EEEEECCEEEEEEEEeCCCcHH-HHHHHHHHhccCCEEEE
Confidence 579999999999999999999876544332222111100 011111 13577999999543 44444433322221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+...+..+..|+.. +.... ....|+++|+||+|. ....
T Consensus 85 v~----------------D~~~~~s~~~l~~~~~~------------------~~~~~-~~~~piiiv~nK~Dl--~~~~ 127 (210)
T PLN03108 85 VY----------------DITRRETFNHLASWLED------------------ARQHA-NANMTIMLIGNKCDL--AHRR 127 (210)
T ss_pred EE----------------ECCcHHHHHHHHHHHHH------------------HHHhc-CCCCcEEEEEECccC--cccc
Confidence 11 12222333333333221 11111 136899999999954 3212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+...++++.. +.+++.+||+++.|+.++.+...+.
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 128 AVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAK 166 (210)
T ss_pred CCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 22344555555544 5789999999999998875554433
No 332
>PRK12736 elongation factor Tu; Reviewed
Probab=98.87 E-value=5e-09 Score=111.51 Aligned_cols=158 Identities=14% Similarity=0.087 Sum_probs=94.3
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCCc----------------ccCCCcccccCccccc--cCCeEEEEeCCCcccC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSAA----------------AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKG 154 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~~----------------~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~ 154 (561)
.+..++|+++|.+++|||||+++|++.... .....|+|.+...... ....+.++||||...
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~- 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD- 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH-
Confidence 345688999999999999999999863210 0114577766533221 234789999999642
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCcc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~ 230 (561)
+.......+..+|++++|+|+...- .....+.+. .+..+..+ +.||+|+..........
T Consensus 88 ------f~~~~~~~~~~~d~~llVvd~~~g~-------~~~t~~~~~----~~~~~g~~~~IvviNK~D~~~~~~~~~~i 150 (394)
T PRK12736 88 ------YVKNMITGAAQMDGAILVVAATDGP-------MPQTREHIL----LARQVGVPYLVVFLNKVDLVDDEELLELV 150 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCC-------chhHHHHHH----HHHHcCCCEEEEEEEecCCcchHHHHHHH
Confidence 1223345567899999999875310 011111121 22223332 69999987322111111
Q ss_pred HHHHHHHhhhcC----CCcEEEEEccCCC--------CHHHHHHHHHhhc
Q psy17315 231 EGEKKMLLGRVG----TNLKVGIVGVPNV--------GKSTFFNVLTKRA 268 (561)
Q Consensus 231 ~~~l~~l~~~~~----~~~~i~isg~~~~--------Gks~l~~~l~~~~ 268 (561)
..++...+.... ..+.+.+||.+|. +..+|++.+.+..
T Consensus 151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 151 EMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 123333333332 2478999999983 6788888887764
No 333
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.87 E-value=6.1e-09 Score=96.36 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=80.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhh--ccCCCcccccCCccccc-cchh---hhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR--AFEDDDVTHVEGEVNPV-RDIE---IINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~--~~~~~~v~~~~gt~dp~-~~~~---~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
++.+.|.+|+||++|++.+.+. .+.. .+.++.|- +.. ..+. ....++.+|||+|.+ .+..+.....+....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~-~~~~t~~~-~~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~~d~ 78 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK-NYLMTTGC-DFVVKEVPVDTDNTVELFIFDSAGQE-LYSDMVSNYWESPSV 78 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc-cCCCceEE-EEEEEEEEeCCCCEEEEEEEECCCHH-HHHHHHHHHhCCCCE
Confidence 6899999999999999999864 2322 22222111 110 0111 122468899999954 344444333322222
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
++..+ ++++.+.+..+..|+.. +.... ...|+++|+||+|. .
T Consensus 79 ii~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~--~~~p~ilv~nK~Dl--~ 120 (164)
T cd04101 79 FILVY----------------DVSNKASFENCSRWVNK------------------VRTAS--KHMPGVLVGNKMDL--A 120 (164)
T ss_pred EEEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECccc--c
Confidence 21111 11222222222222211 11111 35899999999954 2
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
............+.... +.+++++||+++.|+.++.+...+
T Consensus 121 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 121 DKAEVTDAQAQAFAQAN--QLKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred cccCCCHHHHHHHHHHc--CCeEEEEeCCCCCChHHHHHHHHH
Confidence 21111222223333322 567899999999999887655443
No 334
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.87 E-value=5.7e-09 Score=94.99 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=83.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
++.+.|.+|+|||+|++.+.+..+.....+.+.-+..+. .........+.+||+||.+. +..+.....+....++..+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-FRSITPSYYRGAHGAILVY 80 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH-HHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999998865554222211111111 01111235678999999643 4444433332222111111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
+..+.+.+..+..++.. +..... ...|+++++||+|. ......
T Consensus 81 ----------------d~~~~~~~~~~~~~~~~------------------~~~~~~-~~~p~ivv~nK~D~--~~~~~~ 123 (159)
T cd00154 81 ----------------DITNRESFENLDKWLKE------------------LKEYAP-ENIPIILVGNKIDL--EDQRQV 123 (159)
T ss_pred ----------------ECCCHHHHHHHHHHHHH------------------HHHhCC-CCCcEEEEEEcccc--cccccc
Confidence 11111222222222111 111110 35899999999955 211233
Q ss_pred hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 405 WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 405 ~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
..+.++++.... +.+++.+||+++.|+.++.+
T Consensus 124 ~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 124 STEEAQQFAKEN--GLLFFETSAKTGENVEELFQ 155 (159)
T ss_pred cHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHH
Confidence 445566666553 67899999999999877643
No 335
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.87 E-value=3.1e-09 Score=101.35 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=85.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+||++|++.+.+..|.....+.+.........+......+.+|||+|.+ .+..+...+.+....++..+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~-~~~~l~~~~~~~a~~~ilv~- 79 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQE-EFDRLRSLSYADTDVIMLCF- 79 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCCh-hccccccccccCCCEEEEEE-
Confidence 6899999999999999999988664432222111110000111122468899999953 34444443332222222111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc-
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN- 403 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~- 403 (561)
.+.+.+.+..+. .|+.. +.... ...|+++|+||+|........
T Consensus 80 ---------------dv~~~~sf~~~~~~~~~~------------------i~~~~--~~~piilvgNK~Dl~~~~~~~~ 124 (189)
T cd04134 80 ---------------SVDSPDSLENVESKWLGE------------------IREHC--PGVKLVLVALKCDLREARNERD 124 (189)
T ss_pred ---------------ECCCHHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEEChhhccChhhHH
Confidence 233334443332 12221 11111 368999999999652211000
Q ss_pred ---------chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 404 ---------KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 404 ---------~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
...++..+++... ...+++.+||++|.|++++.+...+.
T Consensus 125 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 125 DLQRYGKHTISYEEGLAVAKRI-NALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred HHhhccCCCCCHHHHHHHHHHc-CCCEEEEccCCcCCCHHHHHHHHHHH
Confidence 0112233333332 13578999999999998886655443
No 336
>PLN03118 Rab family protein; Provisional
Probab=98.87 E-value=7.3e-09 Score=100.62 Aligned_cols=162 Identities=10% Similarity=0.149 Sum_probs=87.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...++.+.|.+|+||++|++.++...+. .+.++.|..-....+... ...+.+|||||.+ .+..+...+.+....+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE-RFRTLTSSYYRNAQGI 89 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEECCEEEEEEEEECCCch-hhHHHHHHHHhcCCEE
Confidence 3468999999999999999999987542 333332321011112222 2367899999954 3555544444333222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +..+.+.+..+.+... ..+.........|+++|+||+|. ..
T Consensus 90 vlv~----------------D~~~~~sf~~~~~~~~-----------------~~~~~~~~~~~~~~ilv~NK~Dl--~~ 134 (211)
T PLN03118 90 ILVY----------------DVTRRETFTNLSDVWG-----------------KEVELYSTNQDCVKMLVGNKVDR--ES 134 (211)
T ss_pred EEEE----------------ECCCHHHHHHHHHHHH-----------------HHHHHhcCCCCCCEEEEEECccc--cc
Confidence 2211 1122222222221110 01111111135799999999954 22
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
......+...++.... +.+++++||+++.|++++.+.....+
T Consensus 135 ~~~i~~~~~~~~~~~~--~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 135 ERDVSREEGMALAKEH--GCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred cCccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1122223333444433 56789999999999988866655443
No 337
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.87 E-value=9.4e-09 Score=114.41 Aligned_cols=149 Identities=19% Similarity=0.168 Sum_probs=89.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCc---------cc------CCCcccccCccc--ccc--C---CeEEEEeCCCcccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAA---------AE------NFPFCTIDPNEN--NKV--P---AFLNVVDIAGLVKGA 155 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~---------~~------~~~~~T~~~~~~--~~~--~---~~i~l~DtpG~~~~~ 155 (561)
+++++|.+++|||||+++|...... +. ...|.|...... .+. + ..+.||||||.....
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 6999999999999999999764311 11 123555543221 111 1 468999999997543
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEG 232 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~ 232 (561)
. .....++.||++++|+|++... .......+ ...+ ....+ ++||+|+.... ...
T Consensus 85 ~-------~v~~~l~~aD~aILVvDat~g~-------~~qt~~~~---~~~~-~~~ipiIiViNKiDl~~~~-----~~~ 141 (595)
T TIGR01393 85 Y-------EVSRSLAACEGALLLVDAAQGI-------EAQTLANV---YLAL-ENDLEIIPVINKIDLPSAD-----PER 141 (595)
T ss_pred H-------HHHHHHHhCCEEEEEecCCCCC-------CHhHHHHH---HHHH-HcCCCEEEEEECcCCCccC-----HHH
Confidence 2 2234578899999999986321 01111111 1111 11122 89999986321 111
Q ss_pred HHHHHhhhcC--CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 233 EKKMLLGRVG--TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 233 ~l~~l~~~~~--~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
....+..... ....+.+||++|.|+..|+++|.+..+
T Consensus 142 ~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 142 VKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 1222222222 224799999999999999999998764
No 338
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.86 E-value=4.7e-09 Score=98.81 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=85.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.++.+.|.+|+|||+|+..+....|.....+.+.........+.....++.+|||+|. +.+..+...+.++...++..+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ-EDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCc-hhhhhhhhhhcCCCCEEEEEE
Confidence 4689999999999999999998766544433321111000111112246789999995 445555544443332222222
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh--
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-- 401 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-- 401 (561)
++.+.+.+..+.. |+.. +.... ...|+++|+||+|......
T Consensus 81 ----------------d~~~~~sf~~~~~~~~~~------------------~~~~~--~~~piilvgnK~Dl~~~~~~~ 124 (174)
T cd01871 81 ----------------SLVSPASFENVRAKWYPE------------------VRHHC--PNTPIILVGTKLDLRDDKDTI 124 (174)
T ss_pred ----------------ECCCHHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEeeChhhccChhhH
Confidence 2222233333221 2111 11111 3689999999996521100
Q ss_pred --------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 --------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 --------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....++..++++.. ...+++++||++|.|++++.+..
T Consensus 125 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 125 EKLKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred HHHhhccCCCCCHHHHHHHHHHc-CCcEEEEecccccCCHHHHHHHH
Confidence 011223334444443 12478999999999998875543
No 339
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.86 E-value=5e-09 Score=98.02 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=81.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..++.+.|.+|+|||+|++.+....+. .+.++.|. + ...+...+..+.+|||+|.++ +..+...+.+....++..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~-~-~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGF-N-VETVTYKNVKFNVWDVGGQDK-IRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCccc-c-eEEEEECCEEEEEEECCCCHH-HHHHHHHHhccCCEEEEE
Confidence 357999999999999999999876442 22222221 1 112222345688999999644 455555544433322222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+...+..+..++.+ .+.... ..+.|+++|+||+|. .. .
T Consensus 84 ~----------------D~t~~~s~~~~~~~~~~-----------------~~~~~~-~~~~piilv~NK~Dl--~~--~ 125 (168)
T cd04149 84 V----------------DSADRDRIDEARQELHR-----------------IINDRE-MRDALLLVFANKQDL--PD--A 125 (168)
T ss_pred E----------------eCCchhhHHHHHHHHHH-----------------HhcCHh-hcCCcEEEEEECcCC--cc--C
Confidence 1 11111222222222111 111111 146899999999954 21 1
Q ss_pred chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCC
Q psy17315 404 KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 404 ~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~ 437 (561)
...+++.+++... ....+++++||++|.|+.++.
T Consensus 126 ~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 126 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence 1234455543211 012468999999999987764
No 340
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.86 E-value=2e-09 Score=99.22 Aligned_cols=151 Identities=18% Similarity=0.124 Sum_probs=77.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
+|.+.|.+|+||++|++.+.+..+.. .. ++.|.. ...+.. ....+.+|||+|..+ +..+...+.+....++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~-~t~~~~--~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~iv~v~ 75 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TI-PTVGFN--VEMLQLEKHLSLTVWDVGGQEK-MRTVWKCYLENTDGLVYVV 75 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-cc-CccCcc--eEEEEeCCceEEEEEECCCCHh-HHHHHHHHhccCCEEEEEE
Confidence 37899999999999999999886532 12 222211 111211 124688999999643 3333333332222221111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNK 404 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~ 404 (561)
+..+...+..+..++.. .+... .....|+++|+||+|.... .
T Consensus 76 ----------------D~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~~piilv~nK~Dl~~~----~ 117 (160)
T cd04156 76 ----------------DSSDEARLDESQKELKH-----------------ILKNE-HIKGVPVVLLANKQDLPGA----L 117 (160)
T ss_pred ----------------ECCcHHHHHHHHHHHHH-----------------HHhch-hhcCCCEEEEEECcccccC----c
Confidence 11111112222111111 11111 1247899999999964211 1
Q ss_pred hHHHHHHHHH--hc--CCCCeEEeechhhhhhhCCCCHH
Q psy17315 405 WLPKIKEWVD--AN--DPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 405 ~~~~l~~~~~--~~--~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..+++...+. .. ..+.+++++||++|.|++++.+.
T Consensus 118 ~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 118 TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 1223332221 10 01346899999999999887443
No 341
>KOG0079|consensus
Probab=98.86 E-value=5.8e-09 Score=91.91 Aligned_cols=158 Identities=15% Similarity=0.240 Sum_probs=112.2
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccc-cccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVN-PVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~d-p~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..|.|.+|+||++|+..+....|..+.+..+ |- | .++.+.+.+ .+|.+|||+| +++++.+...+.++....+..
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTi-Gv-DfkirTv~i~G~~VkLqIwDtAG-qErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTI-GV-DFKIRTVDINGDRVKLQIWDTAG-QERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccceEEEe-ee-eEEEEEeecCCcEEEEEEeeccc-HHHHHHHHHHHccCCceEEEE
Confidence 4577899999999999999887776665443 21 1 123333333 4688999999 677888888888888776555
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++++.+....|..|+++ ++... ...|-|+|.||.|. .+-+.
T Consensus 88 Y----------------DVTn~ESF~Nv~rWLee------------------i~~nc--dsv~~vLVGNK~d~--~~Rrv 129 (198)
T KOG0079|consen 88 Y----------------DVTNGESFNNVKRWLEE------------------IRNNC--DSVPKVLVGNKNDD--PERRV 129 (198)
T ss_pred E----------------ECcchhhhHhHHHHHHH------------------HHhcC--ccccceecccCCCC--cccee
Confidence 5 56777888888888876 22232 36888999999953 32233
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
..-+..+.++... +..++.+||+...+++.+...+.+.++..
T Consensus 130 V~t~dAr~~A~~m--gie~FETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 130 VDTEDARAFALQM--GIELFETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred eehHHHHHHHHhc--CchheehhhhhcccchHHHHHHHHHHHHH
Confidence 3445666776665 78899999999999888766666665554
No 342
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.85 E-value=4.6e-09 Score=98.23 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=82.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+||++|++.+.+..+. .+.++.|. +. ..+...+..+.+|||||..+ ...+...+.+....++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~~~T~~~-~~-~~~~~~~~~i~l~Dt~G~~~-~~~~~~~~~~~ad~ii~V~- 74 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QPIPTIGF-NV-ETVEYKNLKFTIWDVGGKHK-LRPLWKHYYLNTQAVVFVV- 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--CcCCcCce-eE-EEEEECCEEEEEEECCCChh-cchHHHHHhccCCEEEEEE-
Confidence 3789999999999999999987432 12221111 11 12233345688999999654 3333333333332222211
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+..+.+.+..+..++.. .+.. ......|+++|+||+|.. . ...
T Consensus 75 ---------------D~s~~~s~~~~~~~~~~-----------------~~~~-~~~~~~piilv~NK~Dl~--~--~~~ 117 (169)
T cd04158 75 ---------------DSSHRDRVSEAHSELAK-----------------LLTE-KELRDALLLIFANKQDVA--G--ALS 117 (169)
T ss_pred ---------------eCCcHHHHHHHHHHHHH-----------------HhcC-hhhCCCCEEEEEeCcCcc--c--CCC
Confidence 11222223323222222 1111 111358999999999542 1 122
Q ss_pred HHHHHHHHHhcC----CCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 406 LPKIKEWVDAND----PGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 406 ~~~l~~~~~~~~----~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.+.+.+++.... ....++++||++|.|+.++.+...+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 118 VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 344444443110 012578899999999988866554443
No 343
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.85 E-value=5.1e-10 Score=103.88 Aligned_cols=160 Identities=20% Similarity=0.237 Sum_probs=81.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHH---HHHHHHhhCCcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEIN---KIEKLVQRGDKK 319 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~---~l~~~~~~~~~~ 319 (561)
.+|.+.|.+|+|||+|++++.+.... .....++++ +... .+...+..+.+|||||+.+... .++....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~----- 75 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERV--IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSV----- 75 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccce--eccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHH-----
Confidence 57999999999999999999987421 122223333 2221 2233345678999999643210 0000000
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
...+. ....++++..|++... ..+......+..... ..+|+++++||+|. .
T Consensus 76 --~~~~~--------------~~~~~d~vi~v~d~~~----------~~~~~~~~~~~~~~~-~~~~~iiv~nK~Dl--~ 126 (174)
T cd01895 76 --LRTLK--------------AIERADVVLLVIDATE----------GITEQDLRIAGLILE-EGKALVIVVNKWDL--V 126 (174)
T ss_pred --HHHHH--------------HHhhcCeEEEEEeCCC----------CcchhHHHHHHHHHh-cCCCEEEEEecccc--C
Confidence 00000 0011122222222111 122233333333322 47999999999954 3
Q ss_pred hhccchHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCCHHH
Q psy17315 400 KKKNKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.......+.+.+.+.... ++.+++++||+++.|+.++.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 170 (174)
T cd01895 127 EKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAI 170 (174)
T ss_pred CccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHH
Confidence 211122333333332221 24689999999999988875543
No 344
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.85 E-value=2.7e-09 Score=104.43 Aligned_cols=150 Identities=16% Similarity=0.053 Sum_probs=83.0
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC-------------------------------cccCCCcccccCcccc--ccCCeEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA-------------------------------AAENFPFCTIDPNENN--KVPAFLN 144 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~-------------------------------~~~~~~~~T~~~~~~~--~~~~~i~ 144 (561)
.|+++|.+++|||||+.+|..... ......|+|++..... ..+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 389999999999999999953210 0011345666554331 2345799
Q ss_pred EEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhccccc
Q psy17315 145 VVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDAKADS 220 (561)
Q Consensus 145 l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~NK~D~ 220 (561)
++||||..... ..+...++.+|++++|+|++.......-.......+.+ ....... .+ ++||+|+
T Consensus 81 liDtpG~~~~~-------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~iiivvNK~Dl 149 (219)
T cd01883 81 ILDAPGHRDFV-------PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA----LLARTLGVKQLIVAVNKMDD 149 (219)
T ss_pred EEECCChHHHH-------HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH----HHHHHcCCCeEEEEEEcccc
Confidence 99999974322 23345678899999999987421100000000011111 1112222 22 8999999
Q ss_pred cCcCCCC---CccHHHHHHHhhhcC----CCcEEEEEccCCCCHH
Q psy17315 221 KKKMGPK---KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKS 258 (561)
Q Consensus 221 ~~~~~~~---~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks 258 (561)
....... ......+...+.... ..+.+++||++|.|+.
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 8321000 011122332333322 3668999999999964
No 345
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.85 E-value=1.2e-08 Score=113.26 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=85.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccC------ccc------cc--------cCCeEEEEeCCCcccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP------NEN------NK--------VPAFLNVVDIAGLVKG 154 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~------~~~------~~--------~~~~i~l~DtpG~~~~ 154 (561)
+++.|+++|.+|+|||||+|+|++.........+.|.+. ... .. ....+.++||||....
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 456799999999999999999987652222222233221 100 00 0013789999998543
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCC----
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPK---- 227 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~---- 227 (561)
.. .....++.+|++++|+|++.. .....+..+.. +.....+ ++||+|+.......
T Consensus 85 ~~-------~~~~~~~~aD~~IlVvDa~~g-------~~~qt~e~i~~----~~~~~vpiIvviNK~D~~~~~~~~~~~~ 146 (586)
T PRK04004 85 TN-------LRKRGGALADIAILVVDINEG-------FQPQTIEAINI----LKRRKTPFVVAANKIDRIPGWKSTEDAP 146 (586)
T ss_pred HH-------HHHHhHhhCCEEEEEEECCCC-------CCHhHHHHHHH----HHHcCCCEEEEEECcCCchhhhhhcCch
Confidence 31 112345779999999988631 01111222222 1222222 89999986321100
Q ss_pred ----C-cc----HHHH----H----HHhh-------------hcCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 228 ----K-TD----EGEK----K----MLLG-------------RVGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 228 ----~-~~----~~~l----~----~l~~-------------~~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
. .+ ...+ . .+.. .....+.+++||.+|.|+..|+..+..
T Consensus 147 ~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 147 FLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 00 0001 0 1110 012346799999999999998887753
No 346
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.85 E-value=7.2e-09 Score=96.49 Aligned_cols=158 Identities=14% Similarity=0.130 Sum_probs=78.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+||++|++++.+..+... ++.+...+.....+.....++.+|||+|..+....+...+ ....-.+..+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~-~~ad~~ilv~- 78 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEI-RKANVICLVY- 78 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhc-ccCCEEEEEE-
Confidence 688999999999999999998866432 2221111100011222335688999999654332222221 1111111111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
++.+.+.+..+.... ...+.... ...|+++|+||+|..........
T Consensus 79 ---------------d~~~~~s~~~~~~~~-----------------~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~ 124 (166)
T cd01893 79 ---------------SVDRPSTLERIRTKW-----------------LPLIRRLG--VKVPIILVGNKSDLRDGSSQAGL 124 (166)
T ss_pred ---------------ECCCHHHHHHHHHHH-----------------HHHHHHhC--CCCCEEEEEEchhcccccchhHH
Confidence 112222222221100 01122221 36899999999964221100011
Q ss_pred HHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 406 LPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 406 ~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+.+...........+++++||+++.|++++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 125 EEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred HHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 12222222221111378999999999988875543
No 347
>PLN03127 Elongation factor Tu; Provisional
Probab=98.84 E-value=5.9e-09 Score=112.26 Aligned_cols=157 Identities=15% Similarity=0.054 Sum_probs=88.2
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCC----------------cccCCCcccccCccccc--cCCeEEEEeCCCcccC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSA----------------AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKG 154 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~----------------~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~ 154 (561)
....++|+++|.+++|||||+++|++... .....+|+|++...... ...++.++||||...
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~- 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD- 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-
Confidence 34557899999999999999999974310 11223788887644322 234789999999842
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCcc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~ 230 (561)
+.......+..+|++++|+|+...- .....+ .-..+.....+ +.||+|+.+........
T Consensus 137 ------f~~~~~~g~~~aD~allVVda~~g~-------~~qt~e----~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i 199 (447)
T PLN03127 137 ------YVKNMITGAAQMDGGILVVSAPDGP-------MPQTKE----HILLARQVGVPSLVVFLNKVDVVDDEELLELV 199 (447)
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCCC-------chhHHH----HHHHHHHcCCCeEEEEEEeeccCCHHHHHHHH
Confidence 2222334456799999999875210 001111 11223333332 58999997421111111
Q ss_pred HHHHHHHhhhcC----CCcEEEEEcc---CCCC-------HHHHHHHHHhh
Q psy17315 231 EGEKKMLLGRVG----TNLKVGIVGV---PNVG-------KSTFFNVLTKR 267 (561)
Q Consensus 231 ~~~l~~l~~~~~----~~~~i~isg~---~~~G-------ks~l~~~l~~~ 267 (561)
..++..++.... ..+.+++|+. +|.| ..+|++++.+.
T Consensus 200 ~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 200 EMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred HHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 112333332222 2345666665 4444 56777777665
No 348
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.84 E-value=7.5e-09 Score=110.59 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=89.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc---ccCCCcccccCc-------------------ccc---------ccCCeE
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA---AENFPFCTIDPN-------------------ENN---------KVPAFL 143 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~---~~~~~~~T~~~~-------------------~~~---------~~~~~i 143 (561)
..++|+++|.+++|||||+++|++.... ..-..|.|.+.. +.. .....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3478999999999999999999874311 000112222111 000 013468
Q ss_pred EEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhcccc
Q psy17315 144 NVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDAKAD 219 (561)
Q Consensus 144 ~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~NK~D 219 (561)
.++||||.... ...+...+..+|++++|+|++... ......+.+.. +..+. ++ ++||+|
T Consensus 83 ~liDtPGh~~f-------~~~~~~g~~~aD~aIlVVDa~~g~------~~~qt~e~l~~----l~~~gi~~iIVvvNK~D 145 (406)
T TIGR03680 83 SFVDAPGHETL-------MATMLSGAALMDGALLVIAANEPC------PQPQTKEHLMA----LEIIGIKNIVIVQNKID 145 (406)
T ss_pred EEEECCCHHHH-------HHHHHHHHHHCCEEEEEEECCCCc------cccchHHHHHH----HHHcCCCeEEEEEEccc
Confidence 99999997432 223455567889999999986321 01111222221 12221 22 799999
Q ss_pred ccCcCCCCCccHHHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 220 SKKKMGPKKTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 220 ~~~~~~~~~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+........ ....+..+.... ...+.+++||++|.|+.+|+++|.+..
T Consensus 146 l~~~~~~~~-~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 146 LVSKEKALE-NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred cCCHHHHHH-HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 974211100 011122222211 234689999999999999999998753
No 349
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.84 E-value=4.9e-09 Score=96.62 Aligned_cols=152 Identities=16% Similarity=0.085 Sum_probs=79.2
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~ 326 (561)
|.+.|.+|+|||+|++.+++..+....+.++.|.. ...+...+..+.+|||||..+ +..+...+.+....++..+
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~--~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~-- 76 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN--VESFEKGNLSFTAFDMSGQGK-YRGLWEHYYKNIQGIIFVI-- 76 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcceecCccccc--eEEEEECCEEEEEEECCCCHh-hHHHHHHHHccCCEEEEEE--
Confidence 68899999999999999998754334444433431 111222345688999999654 4444444433332221111
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecCChhhhhhhccch
Q psy17315 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 327 ~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+..+......+..++.. ++..... ...+|+++|+||+|. .. ...
T Consensus 77 --------------D~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~p~iiv~NK~Dl--~~--~~~ 121 (162)
T cd04157 77 --------------DSSDRLRLVVVKDELEL-----------------LLNHPDIKHRRVPILFFANKMDL--PD--ALT 121 (162)
T ss_pred --------------eCCcHHHHHHHHHHHHH-----------------HHcCcccccCCCCEEEEEeCccc--cC--CCC
Confidence 01111111111111111 1111011 136899999999954 22 111
Q ss_pred HHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 406 LPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 406 ~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
..++.+.+... ....+++++||++|.|++++.+
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 122 AVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred HHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHH
Confidence 23333322211 0123589999999999888744
No 350
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.84 E-value=1e-09 Score=105.89 Aligned_cols=60 Identities=28% Similarity=0.394 Sum_probs=40.4
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhhH-hhhcccHHHHH
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINE-ELRLKDVEHIE 303 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~~-el~l~Dt~Gi~ 303 (561)
...+.|.+.|.+|+|||+|++.+++..+.....+. .|.++.. .+.+.+. .+.+|||||+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~i~Dt~G~~ 100 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLF--ATLDPTTRRLRLPDGREVLLTDTVGFI 100 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccc--eeccceeEEEEecCCceEEEeCCCccc
Confidence 44579999999999999999999997543322221 2233332 2233333 78999999973
No 351
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.84 E-value=3.1e-09 Score=99.92 Aligned_cols=152 Identities=18% Similarity=0.087 Sum_probs=79.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..++.+.|.+|+|||+|++.+....+.. . .++.|.. ...+.....++.+|||||..+ +......+.++...++..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~-~~t~~~~--~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-T-SPTIGSN--VEEIVYKNIRFLMWDIGGQES-LRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-c-CCccccc--eEEEEECCeEEEEEECCCCHH-HHHHHHHHhhcCCEEEEE
Confidence 4679999999999999999998765432 2 2222211 122333345789999999643 444443333333222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+.+.+..+...+. ..+... ....+|+++++||+|... .
T Consensus 90 ~----------------D~s~~~~~~~~~~~l~-----------------~~~~~~-~~~~~p~viv~NK~Dl~~----~ 131 (174)
T cd04153 90 I----------------DSTDRERLPLTKEELY-----------------KMLAHE-DLRKAVLLVLANKQDLKG----A 131 (174)
T ss_pred E----------------ECCCHHHHHHHHHHHH-----------------HHHhch-hhcCCCEEEEEECCCCCC----C
Confidence 1 1111111111111111 111111 124689999999996421 1
Q ss_pred chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 404 KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 404 ~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
...+++.+.+... ....+++++||++|.|++++.+
T Consensus 132 ~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~ 169 (174)
T cd04153 132 MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLD 169 (174)
T ss_pred CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHH
Confidence 1122333322210 1135789999999999877643
No 352
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.83 E-value=4.3e-09 Score=99.13 Aligned_cols=153 Identities=17% Similarity=0.118 Sum_probs=81.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|..|+|||+|++.+....+. ...+ +.|. + ...+...+..+.+|||+|.++ ...+...+.++...++..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~-t~~~-~-~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIP-TIGF-N-VETVTYKNISFTVWDVGGQDK-IRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCC-cccc-c-eEEEEECCEEEEEEECCCChh-hHHHHHHHhCCCCEEEEE
Confidence 468999999999999999999755442 2222 1121 1 112223345688999999544 444555544444333222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..++.. .+.... ....|+++|+||+|.... .
T Consensus 88 ~----------------D~t~~~s~~~~~~~l~~-----------------~~~~~~-~~~~piilv~NK~Dl~~~---~ 130 (175)
T smart00177 88 V----------------DSNDRDRIDEAREELHR-----------------MLNEDE-LRDAVILVFANKQDLPDA---M 130 (175)
T ss_pred E----------------ECCCHHHHHHHHHHHHH-----------------HhhCHh-hcCCcEEEEEeCcCcccC---C
Confidence 2 12222333322222221 111111 136899999999954211 1
Q ss_pred chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHH
Q psy17315 404 KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 404 ~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..+++.+.+... .....++++||++|.|+.++.+.
T Consensus 131 -~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 131 -KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred -CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 122333322111 01235778999999998877543
No 353
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.83 E-value=5.4e-09 Score=97.02 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=79.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+||++|++.+....+.. .+.++.+.. ....+... ...+.+|||+|.............+....++..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~-~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIG-EYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccc-ccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 37899999999999999988765432 222211111 01111122 235779999996531111111122222111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecCChhhhhhhc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK~D~d~~~~~ 402 (561)
+ ++.+.+.+..+..+... +..... ....|+++|+||+|. ....
T Consensus 79 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~~piilv~nK~Dl--~~~~ 122 (165)
T cd04146 79 Y----------------SITDRSSFDEISQLKQL------------------IREIKKRDREIPVILVGNKADL--LHYR 122 (165)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHHhcCCCCCCEEEEEECCch--HHhC
Confidence 1 12222333333222211 111110 136899999999964 2212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhh-hhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEH-QLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~-gl~~L~~~~~ 441 (561)
....+...++.+.. +.+++++||+++. |+.++.+...
T Consensus 123 ~v~~~~~~~~~~~~--~~~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 123 QVSTEEGEKLASEL--GCLFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred ccCHHHHHHHHHHc--CCEEEEeCCCCCchhHHHHHHHHH
Confidence 22233344444443 5789999999994 8888755543
No 354
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.83 E-value=6.7e-09 Score=111.81 Aligned_cols=151 Identities=19% Similarity=0.091 Sum_probs=86.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCc-------------------------------ccCCCcccccCcccc--ccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAA-------------------------------AENFPFCTIDPNENN--KVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~-------------------------------~~~~~~~T~~~~~~~--~~~ 140 (561)
...++|+++|.+++|||||+++|+..... .....|+|.+..... ...
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 34578999999999999999999842210 011336666554332 234
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~N 216 (561)
..+.++||||... +.......++.+|++++|+|++..+... .....+.+. ...... .+ ++|
T Consensus 85 ~~i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~----~~~t~~~~~----~~~~~~~~~iIVviN 149 (426)
T TIGR00483 85 YEVTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDGEFEV----QPQTREHAF----LARTLGINQLIVAIN 149 (426)
T ss_pred eEEEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCCCccc----CCchHHHHH----HHHHcCCCeEEEEEE
Confidence 5789999999532 2223345568899999999987532110 000111111 111222 12 799
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHHH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKST 259 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks~ 259 (561)
|+|+....... .....++..+..... ....+.+||++|.|+..
T Consensus 150 K~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 150 KMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 99997421100 011223333333332 35679999999999874
No 355
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.82 E-value=8.9e-09 Score=98.97 Aligned_cols=157 Identities=11% Similarity=0.146 Sum_probs=81.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|.+|+||++|++.+....+... +..+.+.... ..+.+.+ ..+.+|||+|..+ +..+...+......++..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-YRRTVEEMHR-KEYEVGGVSLTLDILDTSGSYS-FPAMRKLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-CCCchhhhee-EEEEECCEEEEEEEEECCCchh-hhHHHHHHhhcCCEEEEE
Confidence 378999999999999999998765432 2221111110 1122222 3578999999543 343433333222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh-c
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK-K 402 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~-~ 402 (561)
+ ++.+.+.+..+..++.. +........+|+++|+||+|. ... .
T Consensus 78 ~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~NK~Dl--~~~~~ 121 (198)
T cd04147 78 Y----------------AVDDPESFEEVERLREE------------------ILEVKEDKFVPIVVVGNKADS--LEEER 121 (198)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEEcccc--ccccc
Confidence 1 11222233322222111 111111146899999999954 221 1
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....+...+..... .+.+++++||++|.|+.++.+...+
T Consensus 122 ~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 122 QVPAKDALSTVELD-WNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred cccHHHHHHHHHhh-cCCcEEEecCCCCCCHHHHHHHHHH
Confidence 11112222222111 1467899999999999988665544
No 356
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.82 E-value=5.4e-09 Score=96.86 Aligned_cols=151 Identities=10% Similarity=0.091 Sum_probs=84.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
+|.+.|..|+||++|+..+....|... ++++.+.. ...+...+ ..+.+|||+|.+.. .+.+....++..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~~--~~~i~~~~~~~~l~i~D~~g~~~~------~~~~~~~~~ilv 72 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGRF--KKEVLVDGQSHLLLIRDEGGAPDA------QFASWVDAVIFV 72 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccce--EEEEEECCEEEEEEEEECCCCCch------hHHhcCCEEEEE
Confidence 588999999999999998877655433 22222211 11122222 35788999996421 122222222222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..|+.+ +.........|+++|+||+|........
T Consensus 73 ~----------------d~~~~~sf~~~~~~~~~------------------i~~~~~~~~~piilvgnK~Dl~~~~~~~ 118 (158)
T cd04103 73 F----------------SLENEASFQTVYNLYHQ------------------LSSYRNISEIPLILVGTQDAISESNPRV 118 (158)
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEeeHHHhhhcCCcc
Confidence 2 34555666655554433 1111111357999999998543211112
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+..+++.+.. .+.+++.+||+++.|++++.+..
T Consensus 119 v~~~~~~~~~~~~-~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 119 IDDARARQLCADM-KRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred cCHHHHHHHHHHh-CCCcEEEEecCCCCCHHHHHHHH
Confidence 2223334444432 14679999999999988875443
No 357
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.82 E-value=1e-08 Score=93.95 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=81.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|.+|+||++|++.+++..+.....+. .+ +... .+... ...+.+||++|... +..+.....+....++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~~i~ 76 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPT-IE--DSYRKTIVVDGETYTLDILDTAGQEE-FSAMRDLYIRQGDGFIL 76 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCC-hh--HeEEEEEEECCEEEEEEEEECCChHH-HHHHHHHHHhcCCEEEE
Confidence 3789999999999999999987543332222 11 1111 12222 24578999999654 33333333222221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ...+.+.+..+..+... +.........|+++|+||+|.. ...
T Consensus 77 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~ivv~nK~D~~--~~~ 120 (160)
T cd00876 77 VY----------------SITDRESFEEIKGYREQ------------------ILRVKDDEDIPIVLVGNKCDLE--NER 120 (160)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEECCccc--ccc
Confidence 11 11112222222222111 1111111379999999999643 212
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
....+.+.++.... +.+++++||+++.|+.++.+.
T Consensus 121 ~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 121 QVSKEEGKALAKEW--GCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred eecHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHH
Confidence 22334555555443 468999999999998887544
No 358
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.82 E-value=2.3e-08 Score=98.94 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=50.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC---cccCC-C--------------cccccCccc--cccCCeEEEEeCCCcccCCcc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA---AAENF-P--------------FCTIDPNEN--NKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~---~~~~~-~--------------~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~ 157 (561)
.|+++|.+|+|||||+++|+.... ..+.. . |.|...... .+.+.++.++||||......
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~- 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA- 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH-
Confidence 389999999999999999986431 11100 1 111111110 12345799999999864321
Q ss_pred ccccccccccccccCCEEEEEecccc
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
....+++.+|.+++|+|+..
T Consensus 80 ------~~~~~l~~aD~~IlVvd~~~ 99 (237)
T cd04168 80 ------EVERSLSVLDGAILVISAVE 99 (237)
T ss_pred ------HHHHHHHHhCeEEEEEeCCC
Confidence 23456788999999998863
No 359
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.82 E-value=5.9e-09 Score=98.91 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=83.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...++.+.|.+|+||++|++.+....+.. +.++.|.. ...+...+..+.+|||+|.+ ....+...+.++...++.
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~T~~~~--~~~~~~~~~~~~l~D~~G~~-~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT--TIPTIGFN--VETVEYKNLKFTMWDVGGQD-KLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cCCccccc--eEEEEECCEEEEEEECCCCH-hHHHHHHHHhcCCCEEEE
Confidence 34689999999999999999997654432 22222221 11122334568899999954 455555555444333322
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+...+.. .+... ....+|+++|+||.|. .+
T Consensus 91 v~----------------D~t~~~s~~~~~~~l~~-----------------~~~~~-~~~~~piilv~NK~Dl--~~-- 132 (182)
T PTZ00133 91 VV----------------DSNDRERIGDAREELER-----------------MLSED-ELRDAVLLVFANKQDL--PN-- 132 (182)
T ss_pred EE----------------eCCCHHHHHHHHHHHHH-----------------HHhCH-hhcCCCEEEEEeCCCC--CC--
Confidence 22 12222323222222111 11111 1146899999999954 21
Q ss_pred cchHHHHHHHHHhc-CC--CCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDAN-DP--GATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~-~~--~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+.+... .+ ...++++||++|.|+.++.+-..
T Consensus 133 ~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 133 AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 11122333322211 00 23467899999999988855443
No 360
>KOG0080|consensus
Probab=98.81 E-value=2.7e-08 Score=89.06 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=97.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc-ccCC-Ccc---cccCccccccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA-AENF-PFC---TIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~-~~~~-~~~---T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.+||.+||-+|||||||+-+++..... ..+. -|+ .+..+. ......+-+|||+|..+.+. + .-.+.|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRt----L---TpSyyR 82 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRT----L---TPSYYR 82 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhc----c---CHhHhc
Confidence 479999999999999999999866521 1111 111 111111 11234688999999875553 1 234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-------hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-------VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.|-.+++|.|.+.+ ..+.+++.+.+++..+--. |+||+|+..........--.+.+- -.
T Consensus 83 gaqGiIlVYDVT~R----------dtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~----h~ 148 (209)
T KOG0080|consen 83 GAQGIILVYDVTSR----------DTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK----HR 148 (209)
T ss_pred cCceeEEEEEccch----------hhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh----hC
Confidence 89999999988643 3556667666666543222 899999874322211000001111 12
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDD 272 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~ 272 (561)
-.-+..||++-.|++.-|..+.++..+.+
T Consensus 149 ~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 149 CLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred cEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 35688999999999999999988865433
No 361
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.81 E-value=6.2e-09 Score=96.98 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=54.3
Q ss_pred EEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc-----------------------------------------
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN----------------------------------------- 136 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~----------------------------------------- 136 (561)
|+++|..++|||||+|+|.|.. .+++..| +|..+..-
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGP-CTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSS-TTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccc-cccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 6899999999999999999987 4444333 22211100
Q ss_pred -----------------cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEeccc
Q psy17315 137 -----------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 137 -----------------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
......+.|+||||+........ ....+.+..+|++++|+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~ 139 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDAN 139 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETT
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccC
Confidence 01234699999999976443322 33445568999999999764
No 362
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.81 E-value=4.1e-09 Score=98.06 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=37.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhhH-hhhcccHHHHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIINE-ELRLKDVEHIE 303 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~~-el~l~Dt~Gi~ 303 (561)
.|.+.|.+|+|||+|++.|.+.....+..++ .|.+|... +...+. .+.+|||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPF--TTLVPNLGVVRVDDGRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCc--cccCCcceEEEcCCCCeEEEEecCccc
Confidence 4789999999999999999986543333222 23344332 223333 78999999973
No 363
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.81 E-value=4.9e-09 Score=95.59 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=77.3
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~ 326 (561)
|.+.|.+|+|||+|++.+.+..+.....+.+.-.. ..+...+..+.+|||||..+ +..+...+.+....++..+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ii~v~-- 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNM---RKVTKGNVTLKVWDLGGQPR-FRSMWERYCRGVNAIVYVV-- 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcce---EEEEECCEEEEEEECCCCHh-HHHHHHHHHhcCCEEEEEE--
Confidence 68999999999999999999866544433221111 11222234688999999543 3333333332222211111
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchH
Q psy17315 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWL 406 (561)
Q Consensus 327 ~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~ 406 (561)
+..+.+....+..++.. .+. ......+|+++|+||+|. .. .. ..
T Consensus 76 --------------d~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~p~iiv~nK~D~--~~-~~-~~ 119 (159)
T cd04159 76 --------------DAADRTALEAAKNELHD-----------------LLE-KPSLEGIPLLVLGNKNDL--PG-AL-SV 119 (159)
T ss_pred --------------ECCCHHHHHHHHHHHHH-----------------HHc-ChhhcCCCEEEEEeCccc--cC-Cc-CH
Confidence 11111222211111111 011 111247899999999954 22 11 12
Q ss_pred HHHHHHHH--h-cCCCCeEEeechhhhhhhCCCCH
Q psy17315 407 PKIKEWVD--A-NDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 407 ~~l~~~~~--~-~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
..+.+... . .....+++++||++|.|++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 120 DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 22222211 0 11135789999999999887744
No 364
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.81 E-value=1.2e-08 Score=96.76 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=84.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|..|+||++|++.+....+. . +.++.|. + ...+...+..+.+|||+|. ..+..+...+.++..-++..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~-~~pt~g~-~-~~~~~~~~~~~~i~D~~Gq-~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-T-TIPTIGF-N-VETVEYKNISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-c-ccCCcce-e-EEEEEECCEEEEEEECCCC-HHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999865443 1 2222221 1 1122333456889999994 44566665555444333222
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ +..+.+.+..+...+.. .+... .....|+++|+||+|... .
T Consensus 92 ~----------------D~s~~~s~~~~~~~l~~-----------------~l~~~-~~~~~piilv~NK~Dl~~----~ 133 (181)
T PLN00223 92 V----------------DSNDRDRVVEARDELHR-----------------MLNED-ELRDAVLLVFANKQDLPN----A 133 (181)
T ss_pred E----------------eCCcHHHHHHHHHHHHH-----------------HhcCH-hhCCCCEEEEEECCCCCC----C
Confidence 2 11222222222211111 11111 114689999999996422 1
Q ss_pred chHHHHHHHHHhcC--C-CCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDAND--P-GATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~--~-~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+++.+.+.... + ...++++||++|+|+.++.+..
T Consensus 134 ~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 173 (181)
T PLN00223 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
T ss_pred CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHH
Confidence 12344444432210 0 1246689999999988775443
No 365
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.81 E-value=3.2e-08 Score=96.34 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=91.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc----CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV----PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~----~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|+|.+........|..+......... ...+.+|||+|..... ...-...+.+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~-------~~~~~y~~~~ 78 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR-------SLRPEYYRGA 78 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH-------HHHHHHhcCC
Confidence 7899999999999999999998763322222211111110111 2348899999986433 1223445889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCC------------ccHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKK------------TDEGEK 234 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~------------~~~~~l 234 (561)
+.+++|+|... .....+....+...+..... . +.||+|+........ ......
T Consensus 79 ~~~l~~~d~~~---------~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 79 NGILIVYDSTL---------RESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred CEEEEEEeccc---------chhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 99999998653 12233333444444444441 1 899999996642211 000001
Q ss_pred HHHhhhcCCCcEEEEEcc--CCCCHHHHHHHHHhhc
Q psy17315 235 KMLLGRVGTNLKVGIVGV--PNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~--~~~Gks~l~~~l~~~~ 268 (561)
.......... .+.+|+. ++.++..++.......
T Consensus 150 ~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 150 AVLPEVANPA-LLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred Hhhhhhcccc-eeEeecccCCCcCHHHHHHHHHHHH
Confidence 1111112223 7888888 8889888888877764
No 366
>KOG0078|consensus
Probab=98.80 E-value=2.4e-08 Score=94.06 Aligned_cols=153 Identities=16% Similarity=0.095 Sum_probs=98.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..+++.++|-+|||||.++-++.......+-..-...+.... ......+++|||.|..... ..+-+++|
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~-------ti~~sYyr 83 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFR-------TITTAYYR 83 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHH-------HHHHHHHh
Confidence 457999999999999999999986552222111111111100 1123468999999986444 24566789
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.|+.+++|+|.+.. ..++++..+...+.+.... |+||+|+.............+..-.+ -
T Consensus 84 gA~gi~LvyDitne----------~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G----~ 149 (207)
T KOG0078|consen 84 GAMGILLVYDITNE----------KSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG----I 149 (207)
T ss_pred hcCeeEEEEEccch----------HHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC----C
Confidence 99999999987632 2344444444444443332 99999999755544333333333322 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.-+-+||++|.++.+.|-.|+...
T Consensus 150 ~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 150 KFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred eEEEccccCCCCHHHHHHHHHHHH
Confidence 668899999999999999988764
No 367
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.80 E-value=8.4e-09 Score=109.86 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=90.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-------C---------cccCCCcccccCccccc--cCCeEEEEeCCCcccCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-------A---------AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-------~---------~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~ 155 (561)
...++|+++|.+++|||||+++|++.. . ......|+|.+...... .+.++.++||||.....
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 445789999999999999999998431 1 01123677777543222 23468999999985322
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~ 231 (561)
......+..+|++++|+|+... ......+.+.. +.....+ +.||+|+...........
T Consensus 90 -------~~~~~~~~~~D~~ilVvda~~g-------~~~qt~e~l~~----~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~ 151 (394)
T TIGR00485 90 -------KNMITGAAQMDGAILVVSATDG-------PMPQTREHILL----ARQVGVPYIVVFLNKCDMVDDEELLELVE 151 (394)
T ss_pred -------HHHHHHHhhCCEEEEEEECCCC-------CcHHHHHHHHH----HHHcCCCEEEEEEEecccCCHHHHHHHHH
Confidence 2334556788999999987631 01111122221 2222222 589999874221111111
Q ss_pred HHHHHHhhhcC----CCcEEEEEccCCC--------CHHHHHHHHHh
Q psy17315 232 GEKKMLLGRVG----TNLKVGIVGVPNV--------GKSTFFNVLTK 266 (561)
Q Consensus 232 ~~l~~l~~~~~----~~~~i~isg~~~~--------Gks~l~~~l~~ 266 (561)
.++..++.... ..+.+.+|+.+|. |..+|+++|.+
T Consensus 152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 152 MEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred HHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 23444443332 2578999999874 34566666654
No 368
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.80 E-value=5.9e-08 Score=94.47 Aligned_cols=154 Identities=21% Similarity=0.143 Sum_probs=87.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..+|++++|.+|||||||++++.... ....+..|........ ......+.++||||..... .+ ....++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~----~~---~~~~~~ 80 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG----GL---RDGYYI 80 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhh----hh---hHHHhc
Confidence 34799999999999999997654333 2222222322211110 0112468899999964322 11 123456
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+|++++|+|.+... .+..+..+...+...... ++||+|+.++... .... .+... ....
T Consensus 81 ~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~----~~~~-~~~~~-~~~~ 144 (215)
T PTZ00132 81 KGQCAIIMFDVTSRI----------TYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK----ARQI-TFHRK-KNLQ 144 (215)
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC----HHHH-HHHHH-cCCE
Confidence 889999999876322 122222222222221111 7899998643211 1111 12221 2235
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
.+.+|+++|.|++..+.+|.......
T Consensus 145 ~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 145 YYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 68999999999999999998876443
No 369
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.79 E-value=4.3e-09 Score=97.07 Aligned_cols=151 Identities=17% Similarity=0.089 Sum_probs=77.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+|||+|++.+....+.. ..+. .|. ....+...+..+.+|||||..+ +..+...+.+...-++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t-~~~--~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~ii~v~- 74 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPT-IGF--NVETVTYKNLKFQVWDLGGQTS-IRPYWRCYYSNTDAIIYVV- 74 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCc-cCc--CeEEEEECCEEEEEEECCCCHH-HHHHHHHHhcCCCEEEEEE-
Confidence 37899999999999999997765432 1111 111 1112223345688999999643 4444444333222221111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+..+...+.....++ ...++.. ....+|+++|+||+|. .. ...
T Consensus 75 ---------------d~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~~piiiv~nK~Dl--~~--~~~ 117 (158)
T cd04151 75 ---------------DSTDRDRLGTAKEEL-----------------HAMLEEE-ELKGAVLLVFANKQDM--PG--ALS 117 (158)
T ss_pred ---------------ECCCHHHHHHHHHHH-----------------HHHHhch-hhcCCcEEEEEeCCCC--CC--CCC
Confidence 011111111000100 0111111 1247899999999954 22 111
Q ss_pred HHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHH
Q psy17315 406 LPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 406 ~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..++.+.+... ..+.+++++||++|.|+.++.+.
T Consensus 118 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 118 EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 23333322111 01347999999999999887443
No 370
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.79 E-value=1.4e-08 Score=94.33 Aligned_cols=156 Identities=18% Similarity=0.225 Sum_probs=81.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..++.+.|.+|+|||+|++.+.+..+.....+.+ | .+... .+...+ ..+.+|||+|... +......+.+....+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~~ 83 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI-G-VDFMIKTVEIKGEKIKLQIWDTAGQER-FRSITQSYYRSANAL 83 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-e-eEEEEEEEEECCEEEEEEEEECCCcHH-HHHHHHHHhcCCCEE
Confidence 4689999999999999999999775543322211 1 11111 122222 3577899999543 443333333222222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+....+..++.. +..... ...|+++|+||+|. ..
T Consensus 84 i~v~----------------d~~~~~s~~~~~~~~~~------------------l~~~~~-~~~~~i~v~NK~D~--~~ 126 (169)
T cd04114 84 ILTY----------------DITCEESFRCLPEWLRE------------------IEQYAN-NKVITILVGNKIDL--AE 126 (169)
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhCC-CCCeEEEEEECccc--cc
Confidence 1111 11222222222222211 222211 36899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
..+...+..+.+.+.. ..+++++||++|.|+.++.+...
T Consensus 127 ~~~i~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 127 RREVSQQRAEEFSDAQ--DMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred ccccCHHHHHHHHHHc--CCeEEEeeCCCCCCHHHHHHHHH
Confidence 1221112122222222 46799999999999888865543
No 371
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.78 E-value=6.6e-09 Score=97.05 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=41.4
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCC
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGD 317 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~ 317 (561)
|.+.|.+|+||++|++.+.+. +.. .+.++.|.. ...+...+..+.+|||+|-. .+..+...+.+..
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~~-~~~~t~g~~--~~~~~~~~~~~~i~D~~G~~-~~~~~~~~~~~~a 67 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IPK-KVAPTVGFT--PTKLRLDKYEVCIFDLGGGA-NFRGIWVNYYAEA 67 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCc-cccCcccce--EEEEEECCEEEEEEECCCcH-HHHHHHHHHHcCC
Confidence 789999999999999999977 332 222222332 11233344568899999954 3555555544433
No 372
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.78 E-value=1.8e-09 Score=103.26 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=34.8
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHh-----cCCCCeEEeechhhhhhhCCCCHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDA-----NDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~-----~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..+|+++|+||+|...........+++.+.+.. ...+.+++++||++|.|+.+|.+.
T Consensus 119 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~ 180 (192)
T cd01889 119 LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKD 180 (192)
T ss_pred cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHH
Confidence 368999999999642111111223334332221 123578999999999999887443
No 373
>KOG0088|consensus
Probab=98.78 E-value=6e-09 Score=92.78 Aligned_cols=161 Identities=15% Similarity=0.215 Sum_probs=114.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-cccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..++.+.|---+||++|.-...+..|.....+..... ....-.++-....+.+|||+| ++++..+-..|+++....+.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAG-QErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAG-QERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccc-hHhhhccCceEEeCCCceEE
Confidence 3578899999999999999999998877766543222 111112223345688999999 66788888888887766655
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ +|++.|.+.+|..|..+ |+.+.- ....+++|.||+|. -+..
T Consensus 92 Vy----------------DITDrdSFqKVKnWV~E------------------lr~mlG-nei~l~IVGNKiDL--EeeR 134 (218)
T KOG0088|consen 92 VY----------------DITDRDSFQKVKNWVLE------------------LRTMLG-NEIELLIVGNKIDL--EEER 134 (218)
T ss_pred EE----------------eccchHHHHHHHHHHHH------------------HHHHhC-CeeEEEEecCcccH--HHhh
Confidence 55 67888999999888765 222222 35678899999954 3334
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
....++...|++.. ++..+.+||+.+.||.+|.+...+..
T Consensus 135 ~Vt~qeAe~YAesv--GA~y~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 135 QVTRQEAEAYAESV--GALYMETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred hhhHHHHHHHHHhh--chhheecccccccCHHHHHHHHHHHH
Confidence 44566666777665 77789999999999999876654443
No 374
>KOG1490|consensus
Probab=98.78 E-value=8.9e-09 Score=107.39 Aligned_cols=175 Identities=17% Similarity=0.145 Sum_probs=102.9
Q ss_pred hhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHH----HHHHHHHHh
Q psy17315 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKE----INKIEKLVQ 314 (561)
Q Consensus 239 ~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~----~~~l~~~~~ 314 (561)
...++.....++|.+|+|||+++|-++...++..+++|++-.. -+-.+.+.-..++++||||+-.. .+.++...+
T Consensus 163 sIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL-~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 163 AIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLL-LVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchh-hhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH
Confidence 3446778899999999999999999999999999998854221 00011222246789999998321 122222211
Q ss_pred hCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecC
Q psy17315 315 RGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNL 393 (561)
Q Consensus 315 ~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK 393 (561)
. . .+|++ .+++.+.|..+.++ -...++.++++.+.. ..+||+|+|+||
T Consensus 242 T-----------A-----------LAHLr--aaVLYfmDLSe~CG-------ySva~QvkLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 242 T-----------A-----------LAHLR--SAVLYFMDLSEMCG-------YSVAAQVKLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred H-----------H-----------HHHhh--hhheeeeechhhhC-------CCHHHHHHHHHHhHHHhcCCceEEEeec
Confidence 0 0 01222 23333334333321 122345566665542 268999999999
Q ss_pred Chhhhhhhc-cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 394 SAKDYIKKK-NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 394 ~D~d~~~~~-~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
+|.--.++- ++..+-+....+. .+.+++.+|+.++.|+.++..+.....+..
T Consensus 291 ~D~m~~edL~~~~~~ll~~~~~~--~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 291 IDAMRPEDLDQKNQELLQTIIDD--GNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred ccccCccccCHHHHHHHHHHHhc--cCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 965211111 1111222222222 258899999999999999988777776654
No 375
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.78 E-value=1.6e-08 Score=96.00 Aligned_cols=153 Identities=13% Similarity=0.073 Sum_probs=82.8
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
....++.+.|.+|+|||+|++.+.+..+. .+.+ |..+. ..+...+.++.+|||+|..+ ...+...+......+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~~~~---t~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~ad~i 88 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA--QHQP---TQHPTSEELAIGNIKFTTFDLGGHQQ-ARRLWKDYFPEVNGI 88 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc--ccCC---ccccceEEEEECCEEEEEEECCCCHH-HHHHHHHHhCCCCEE
Confidence 34578999999999999999999987443 2211 11121 12223345788999999654 344444443333222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +..+.+.+......+.. ++. .....++|+++|+||+|...
T Consensus 89 i~vv----------------D~~~~~~~~~~~~~l~~-----------------l~~-~~~~~~~piliv~NK~Dl~~-- 132 (184)
T smart00178 89 VYLV----------------DAYDKERFAESKRELDA-----------------LLS-DEELATVPFLILGNKIDAPY-- 132 (184)
T ss_pred EEEE----------------ECCcHHHHHHHHHHHHH-----------------HHc-ChhhcCCCEEEEEeCccccC--
Confidence 1111 11111222211111111 111 11124789999999996421
Q ss_pred hccchHHHHHHHHHhcC----------CCCeEEeechhhhhhhCCCCH
Q psy17315 401 KKNKWLPKIKEWVDAND----------PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~----------~~~~vi~iSA~~~~gl~~L~~ 438 (561)
....+++.+.+.... ....++++||++|.|+.++.+
T Consensus 133 --~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~ 178 (184)
T smart00178 133 --AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFK 178 (184)
T ss_pred --CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHH
Confidence 122344544432110 134599999999999877643
No 376
>KOG0080|consensus
Probab=98.77 E-value=9.1e-09 Score=91.99 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=100.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cc--hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RD--IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~--~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|..|+|||+|+-.++...|....-..+ | +|-. .. +.-....+.+|||+| +++++.+...++++++.+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tI-G-vDFkvk~m~vdg~~~KlaiWDTAG-qErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTI-G-VDFKVKVMQVDGKRLKLAIWDTAG-QERFRTLTPSYYRGAQGI 87 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCcee-e-eeEEEEEEEEcCceEEEEEEeccc-hHhhhccCHhHhccCcee
Confidence 4689999999999999999999987654432211 1 1111 11 222334678899999 677999999999988887
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+-.+ +++..+.+..+-.|+.+ +..+.-..+.-.++|.||+|....
T Consensus 88 IlVY----------------DVT~Rdtf~kLd~W~~E------------------ld~Ystn~diikmlVgNKiDkes~- 132 (209)
T KOG0080|consen 88 ILVY----------------DVTSRDTFVKLDIWLKE------------------LDLYSTNPDIIKMLVGNKIDKESE- 132 (209)
T ss_pred EEEE----------------EccchhhHHhHHHHHHH------------------HHhhcCCccHhHhhhcccccchhc-
Confidence 6665 55666777777566554 111211123445679999965421
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.....++=.++++.+ ..-++.+||++..|+....++..
T Consensus 133 -R~V~reEG~kfAr~h--~~LFiE~SAkt~~~V~~~Feelv 170 (209)
T KOG0080|consen 133 -RVVDREEGLKFARKH--RCLFIECSAKTRENVQCCFEELV 170 (209)
T ss_pred -ccccHHHHHHHHHhh--CcEEEEcchhhhccHHHHHHHHH
Confidence 111222222344443 56789999999999776655443
No 377
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.77 E-value=2.4e-08 Score=97.98 Aligned_cols=150 Identities=19% Similarity=0.089 Sum_probs=82.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccC--------------CCcccccCcc--------------------------cc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAEN--------------FPFCTIDPNE--------------------------NN 137 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~--------------~~~~T~~~~~--------------------------~~ 137 (561)
+|+++|.+++|||||+++|+......+. .-|.|..... ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4899999999999999999853211000 0122211000 00
Q ss_pred ccCCeEEEEeCCCcccCCcccccccccccccc--ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch--
Q psy17315 138 KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI--SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-- 213 (561)
Q Consensus 138 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i--~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-- 213 (561)
..+..+.++||||...... .....+ +.+|++++|+|+...- ...-..+...+.....+
T Consensus 81 ~~~~~i~liDtpG~~~~~~-------~~~~~~~~~~~D~~llVvda~~g~-----------~~~d~~~l~~l~~~~ip~i 142 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLK-------TTLFGLTGYAPDYAMLVVAANAGI-----------IGMTKEHLGLALALNIPVF 142 (224)
T ss_pred eCCcEEEEEECCCcHHHHH-------HHHHhhcccCCCEEEEEEECCCCC-----------cHHHHHHHHHHHHcCCCEE
Confidence 1234689999999753221 122223 3689999999875210 01111122233333333
Q ss_pred -hhccccccCcCCCCCccHHHHHHHhhh-------------------------cCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 214 -VDAKADSKKKMGPKKTDEGEKKMLLGR-------------------------VGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 214 -v~NK~D~~~~~~~~~~~~~~l~~l~~~-------------------------~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
+.||+|+.+...... ....+...+.. ....+.+.+|+.+|.|+..|...|..
T Consensus 143 vvvNK~D~~~~~~~~~-~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 143 VVVTKIDLAPANILQE-TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EEEECccccCHHHHHH-HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 899999864322111 11122222221 11236788999999999999988754
No 378
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.77 E-value=1.9e-08 Score=95.62 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=82.3
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
....++.+.|.+|+|||+|++.+.+..+. .+.+ |..+. ..+.+.+..+.+|||||... ...+...+.+....+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~~~---T~~~~~~~i~~~~~~~~l~D~~G~~~-~~~~~~~~~~~ad~i 90 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA--QHVP---TLHPTSEELTIGNIKFKTFDLGGHEQ-ARRLWKDYFPEVDGI 90 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc--ccCC---ccCcceEEEEECCEEEEEEECCCCHH-HHHHHHHHhccCCEE
Confidence 34578999999999999999999987542 2222 22121 12333345678999999533 444443433333222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +..+...+.....++.+ .+. .......|+++++||+|. ..
T Consensus 91 ilV~----------------D~~~~~s~~~~~~~~~~-----------------i~~-~~~~~~~pvivv~NK~Dl--~~ 134 (190)
T cd00879 91 VFLV----------------DAADPERFQESKEELDS-----------------LLS-DEELANVPFLILGNKIDL--PG 134 (190)
T ss_pred EEEE----------------ECCcHHHHHHHHHHHHH-----------------HHc-CccccCCCEEEEEeCCCC--CC
Confidence 1111 11111111111111111 111 111246899999999954 21
Q ss_pred hccchHHHHHHHHHhcC--------------CCCeEEeechhhhhhhCCCCH
Q psy17315 401 KKNKWLPKIKEWVDAND--------------PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~--------------~~~~vi~iSA~~~~gl~~L~~ 438 (561)
....+++++++.... ...+++++||++|.|+.++.+
T Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~ 184 (190)
T cd00879 135 --AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFR 184 (190)
T ss_pred --CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHH
Confidence 222345555543210 124689999999999877744
No 379
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.76 E-value=8e-09 Score=95.03 Aligned_cols=150 Identities=18% Similarity=0.119 Sum_probs=80.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+|||+|++++++..+ ....++.+.. ...+......+.+|||||.++ +..+...+.....-++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~~i~v~- 74 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTTIPTIGFN--VETVEYKNVSFTVWDVGGQDK-IRPLWKHYYENTNGIIFVV- 74 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCcCcc--eEEEEECCEEEEEEECCCChh-hHHHHHHHhccCCEEEEEE-
Confidence 378999999999999999998852 2222222221 112223345688999999654 3444433332222221111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+....+.+..+..++.. ++. .......|+++|+||+|... ...
T Consensus 75 ---------------D~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~piiiv~nK~D~~~----~~~ 117 (158)
T cd00878 75 ---------------DSSDRERIEEAKEELHK-----------------LLN-EEELKGVPLLIFANKQDLPG----ALS 117 (158)
T ss_pred ---------------ECCCHHHHHHHHHHHHH-----------------HHh-CcccCCCcEEEEeeccCCcc----ccC
Confidence 11222222222222211 111 11125789999999996432 112
Q ss_pred HHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCH
Q psy17315 406 LPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 406 ~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+++.+.+... ....+++++||++|.|++++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 118 VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 33344333221 1246799999999999877643
No 380
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.76 E-value=2e-08 Score=107.42 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=93.2
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcCCC---cccCCCcccccCccc------------------c----------ccC
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKSSA---AAENFPFCTIDPNEN------------------N----------KVP 140 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~~~---~~~~~~~~T~~~~~~------------------~----------~~~ 140 (561)
+....++|+++|..++|||||+.+|++... .-.-..|.|.+.... . ...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 345568999999999999999999987421 111123444432110 0 002
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~N 216 (561)
..+.++||||.. .+...++..+..+|++++|+|++... ......+.+.. +.... .+ ++|
T Consensus 85 ~~i~liDtPG~~-------~f~~~~~~~~~~~D~~llVVDa~~~~------~~~~t~~~l~~----l~~~~i~~iiVVlN 147 (411)
T PRK04000 85 RRVSFVDAPGHE-------TLMATMLSGAALMDGAILVIAANEPC------PQPQTKEHLMA----LDIIGIKNIVIVQN 147 (411)
T ss_pred cEEEEEECCCHH-------HHHHHHHHHHhhCCEEEEEEECCCCC------CChhHHHHHHH----HHHcCCCcEEEEEE
Confidence 468999999953 22334556667889999999986310 01111122221 22222 12 789
Q ss_pred cccccCcCCCCCccHHHHHHHhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 217 KADSKKKMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 217 K~D~~~~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
|+|+.+...... ....+..+... ....+.+.+|+++|.|+.+|+++|.+..
T Consensus 148 K~Dl~~~~~~~~-~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 148 KIDLVSKERALE-NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred eeccccchhHHH-HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 999974321100 01122222221 1235679999999999999999998764
No 381
>KOG0091|consensus
Probab=98.76 E-value=5e-08 Score=87.54 Aligned_cols=152 Identities=16% Similarity=0.268 Sum_probs=104.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh----h------hHhhhcccHHHHHHHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI----I------NEELRLKDVEHIEKEINKIEKLVQ 314 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~----~------~~el~l~Dt~Gi~~~~~~l~~~~~ 314 (561)
.+..+.|..-+|||+|+..+++..|.. .+ ||..++++ + ...|.+|||+| ++++..+.+.++
T Consensus 9 frlivigdstvgkssll~~ft~gkfae--ls------dptvgvdffarlie~~pg~riklqlwdtag-qerfrsitksyy 79 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAE--LS------DPTVGVDFFARLIELRPGYRIKLQLWDTAG-QERFRSITKSYY 79 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccc--cC------CCccchHHHHHHHhcCCCcEEEEEEeeccc-hHHHHHHHHHHh
Confidence 568899999999999999999986532 22 33322221 1 13578999999 677888998887
Q ss_pred hCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCce-EEEecC
Q psy17315 315 RGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQ-IYLVNL 393 (561)
Q Consensus 315 ~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~-iiv~NK 393 (561)
+..-.....+ +|++....+||.+|+.++ . +.... ..|++ ++|..|
T Consensus 80 rnsvgvllvy----------------ditnr~sfehv~~w~~ea--~--------------m~~q~--P~k~VFlLVGhK 125 (213)
T KOG0091|consen 80 RNSVGVLLVY----------------DITNRESFEHVENWVKEA--A--------------MATQG--PDKVVFLLVGHK 125 (213)
T ss_pred hcccceEEEE----------------eccchhhHHHHHHHHHHH--H--------------HhcCC--CCeeEEEEeccc
Confidence 6554443333 567778899999998762 0 11111 35664 579999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
+|.+ .......++.++++..+ +..+|.+||++|.|+++......++
T Consensus 126 sDL~--SqRqVt~EEaEklAa~h--gM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 126 SDLQ--SQRQVTAEEAEKLAASH--GMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred cchh--hhccccHHHHHHHHHhc--CceEEEecccCCCcHHHHHHHHHHH
Confidence 9554 44555667776666665 7889999999999988765554444
No 382
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.76 E-value=1.8e-09 Score=123.07 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=87.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|+|.+++.....+++ +|++ ++.+. +...+.++.++||||+++... ..... ...+.+..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~---pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~-~~~~~-s~~E~i~~ 78 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNW---AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT-ISSQT-SLDEQIAC 78 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCC---CCceEeeEEEEEEcCceEEEEEECCCcccccc-ccccc-cHHHHHHH
Confidence 479999999999999999999986544444 5554 44443 344556899999999754210 00000 00000000
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++. .+++|++..|+|.. . .+........... .++|+++|+||+|... +
T Consensus 79 ~~l~---------------~~~aD~vI~VvDat-----------~-ler~l~l~~ql~e-~giPvIvVlNK~Dl~~---~ 127 (772)
T PRK09554 79 HYIL---------------SGDADLLINVVDAS-----------N-LERNLYLTLQLLE-LGIPCIVALNMLDIAE---K 127 (772)
T ss_pred HHHh---------------ccCCCEEEEEecCC-----------c-chhhHHHHHHHHH-cCCCEEEEEEchhhhh---c
Confidence 0000 01113333333210 1 1112222222222 4799999999996532 1
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......++++.+.. +.|++++||+++.|++++.+...+
T Consensus 128 ~~i~id~~~L~~~L--G~pVvpiSA~~g~GIdeL~~~I~~ 165 (772)
T PRK09554 128 QNIRIDIDALSARL--GCPVIPLVSTRGRGIEALKLAIDR 165 (772)
T ss_pred cCcHHHHHHHHHHh--CCCEEEEEeecCCCHHHHHHHHHH
Confidence 12222333333333 689999999999999988665443
No 383
>PRK10218 GTP-binding protein; Provisional
Probab=98.75 E-value=4.3e-08 Score=108.93 Aligned_cols=154 Identities=14% Similarity=0.068 Sum_probs=92.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcc----------------cCCCcccccCccc--cccCCeEEEEeCCCcccCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA----------------ENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEG 158 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~----------------~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~ 158 (561)
.+|+++|.+++|||||+++|+...... ....|.|...... .+.+..+.+|||||......
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~-- 83 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG-- 83 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH--
Confidence 479999999999999999998643110 1123444432221 22345799999999754332
Q ss_pred cccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHH
Q psy17315 159 QGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKK 235 (561)
Q Consensus 159 ~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~ 235 (561)
.....++.+|++++|+|+.... .... ......+.....+ +.||+|..... +.. ....+.
T Consensus 84 -----~v~~~l~~aDg~ILVVDa~~G~-------~~qt----~~~l~~a~~~gip~IVviNKiD~~~a~-~~~-vl~ei~ 145 (607)
T PRK10218 84 -----EVERVMSMVDSVLLVVDAFDGP-------MPQT----RFVTKKAFAYGLKPIVVINKVDRPGAR-PDW-VVDQVF 145 (607)
T ss_pred -----HHHHHHHhCCEEEEEEecccCc-------cHHH----HHHHHHHHHcCCCEEEEEECcCCCCCc-hhH-HHHHHH
Confidence 2344568999999999886310 0000 1111122223333 89999987432 111 112222
Q ss_pred HHhhh------cCCCcEEEEEccCCC----------CHHHHHHHHHhhccC
Q psy17315 236 MLLGR------VGTNLKVGIVGVPNV----------GKSTFFNVLTKRAFE 270 (561)
Q Consensus 236 ~l~~~------~~~~~~i~isg~~~~----------Gks~l~~~l~~~~~~ 270 (561)
++... ....+.+.+||.+|. |...|++.+.+..+.
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 22211 123678999999998 688999999887643
No 384
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.75 E-value=1e-08 Score=96.15 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=79.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc---chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR---DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~---~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
++.+.|.+|+||++|+..+.+..+.....+.. .+... .+......+.+|||+|.++ +..+...+.+....++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~a~~~i~ 77 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA---FDNFSVVVLVDGKPVRLQLCDTAGQDE-FDKLRPLCYPDTDVFLL 77 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---eeeeeEEEEECCEEEEEEEEECCCChh-hccccccccCCCcEEEE
Confidence 58899999999999999998766544322211 11111 1111123578899999533 44333332222222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK- 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~- 400 (561)
.+ ++.+.+.+..+. .|+.. +... ..+.|+++|+||+|.....
T Consensus 78 v~----------------d~~~~~sf~~~~~~~~~~------------------~~~~--~~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 78 CF----------------SVVNPSSFQNISEKWIPE------------------IRKH--NPKAPIILVGTQADLRTDVN 121 (173)
T ss_pred EE----------------ECCCHHHHHHHHHHHHHH------------------HHhh--CCCCCEEEEeeChhhccChh
Confidence 11 122223332221 11111 1111 1368999999999642110
Q ss_pred ---------hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 401 ---------KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 401 ---------~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
......++..++++.. ...+++++||++|.|+.++.+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~-~~~~~~e~Sa~~~~~v~~lf~ 167 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKI-GACEYIECSALTQKNLKEVFD 167 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHh-CCCeEEEEeCCCCCCHHHHHH
Confidence 0111223344444443 123799999999999888744
No 385
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.75 E-value=1.7e-08 Score=93.07 Aligned_cols=154 Identities=16% Similarity=0.266 Sum_probs=95.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
+|.+.|..|+||++|++.+.+..+.....++. |. +.. ..+ ......+.+||++|.+ .+..+.....+....++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~l~i~D~~g~~-~~~~~~~~~~~~~~~~ii 77 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTI-GI-DSYSKEVSIDGKPVNLEIWDTSGQE-RFDSLRDIFYRNSDAIII 77 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTS-SE-EEEEEEEEETTEEEEEEEEEETTSG-GGHHHHHHHHTTESEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccc-cc-ccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 58899999999999999999987654443332 11 111 112 1222458899999943 455554444433333322
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..|+.. +..... ...|+++|.||.|... ..
T Consensus 78 ~f----------------d~~~~~S~~~~~~~~~~------------------i~~~~~-~~~~iivvg~K~D~~~--~~ 120 (162)
T PF00071_consen 78 VF----------------DVTDEESFENLKKWLEE------------------IQKYKP-EDIPIIVVGNKSDLSD--ER 120 (162)
T ss_dssp EE----------------ETTBHHHHHTHHHHHHH------------------HHHHST-TTSEEEEEEETTTGGG--GS
T ss_pred cc----------------ccccccccccccccccc------------------cccccc-ccccceeeeccccccc--cc
Confidence 22 34555676666666543 222221 3589999999995432 23
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....++.++++... +.+++.+||+++.|+.++.....
T Consensus 121 ~v~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~~i 157 (162)
T PF00071_consen 121 EVSVEEAQEFAKEL--GVPYFEVSAKNGENVKEIFQELI 157 (162)
T ss_dssp SSCHHHHHHHHHHT--TSEEEEEBTTTTTTHHHHHHHHH
T ss_pred cchhhHHHHHHHHh--CCEEEEEECCCCCCHHHHHHHHH
Confidence 33455666777665 58999999999999877654433
No 386
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.74 E-value=8.3e-09 Score=96.60 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=37.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi 302 (561)
..++.+.|.+|+|||+|++++.+..|....+.++.+..-....+...+ ..+.+||++|-
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~ 64 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED 64 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCc
Confidence 457999999999999999999998766233333222110011122222 35778999994
No 387
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.73 E-value=5.3e-08 Score=108.55 Aligned_cols=150 Identities=18% Similarity=0.154 Sum_probs=90.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcc---------------cCCCcccccCccc--ccc-----CCeEEEEeCCCcccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA---------------ENFPFCTIDPNEN--NKV-----PAFLNVVDIAGLVKG 154 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~---------------~~~~~~T~~~~~~--~~~-----~~~i~l~DtpG~~~~ 154 (561)
.+++++|..++|||||+.+|......+ ....|.|...... .+. ...+.||||||....
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 479999999999999999997532110 1123555443221 111 246899999999754
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccH
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~ 231 (561)
.. .....++.||++++|+|++... .......+.. +.....+ ++||+|+.... ..
T Consensus 88 ~~-------~v~~sl~~aD~aILVVDas~gv-------~~qt~~~~~~----~~~~~lpiIvViNKiDl~~a~-----~~ 144 (600)
T PRK05433 88 SY-------EVSRSLAACEGALLVVDASQGV-------EAQTLANVYL----ALENDLEIIPVLNKIDLPAAD-----PE 144 (600)
T ss_pred HH-------HHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHH----HHHCCCCEEEEEECCCCCccc-----HH
Confidence 32 1234567899999999986321 0011111111 1111222 99999986321 11
Q ss_pred HHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 232 GEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 232 ~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.....+.... .....+.+||++|.|+..|+++|.+..+
T Consensus 145 ~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 145 RVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1122222222 2234799999999999999999988754
No 388
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.72 E-value=2.9e-08 Score=97.53 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=53.6
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
...+..|+++|.||+|||||+|+|.+.. ..++...|+. ... .....++.++||||.. ...+..++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i~--~~~~~~i~~vDtPg~~----------~~~l~~ak 102 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TVV--TGKKRRLTFIECPNDI----------NAMIDIAK 102 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EEE--ecCCceEEEEeCCchH----------HHHHHHHH
Confidence 3456789999999999999999998763 2233334421 111 1235678999999854 23345568
Q ss_pred cCCEEEEEeccc
Q psy17315 171 ACDAIFHLCKEK 182 (561)
Q Consensus 171 ~~D~il~VvD~~ 182 (561)
.+|++++|+|++
T Consensus 103 ~aDvVllviDa~ 114 (225)
T cd01882 103 VADLVLLLIDAS 114 (225)
T ss_pred hcCEEEEEEecC
Confidence 899999999875
No 389
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.72 E-value=8.7e-08 Score=99.24 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcC----C-C-----------cccCCCc---ccccCccc------cc----cCCe
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKS----S-A-----------AAENFPF---CTIDPNEN------NK----VPAF 142 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~----~-~-----------~~~~~~~---~T~~~~~~------~~----~~~~ 142 (561)
|....+.+|++|.-|+|||||||++++. . . -+++.+| +|.+|... .. ....
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence 4456688999999999999999999987 4 3 4788899 88887652 11 1257
Q ss_pred EEEEeCCCcccCCccccccccc----------------------cccccc-cCCEEEEEe-cccccchhhhccchhhHhh
Q psy17315 143 LNVVDIAGLVKGAAEGQGLGNA----------------------FLSHIS-ACDAIFHLC-KEKLRNIFFISLNTITIWR 198 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~~~~~~~----------------------~l~~i~-~~D~il~Vv-D~~~~~~~~~~~~~~~~~~ 198 (561)
+.++||+|+.-....|..-... ....+. .+|+.++|. |++..++ +......
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI-----~Re~y~~ 167 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDI-----PREDYVE 167 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccc-----ccccchH
Confidence 9999999997543322221222 123455 789998888 7752221 1111122
Q ss_pred hHHHHHHHHHHhcch---hhccccc
Q psy17315 199 NLKLLETRIRDLRRS---VDAKADS 220 (561)
Q Consensus 199 ~~~~l~~~l~~~~~~---v~NK~D~ 220 (561)
.-..+-++|.+..++ +.||+|-
T Consensus 168 aEe~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 168 AEERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHHHHHhcCCCEEEEEECcCC
Confidence 223344566666666 8999884
No 390
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.72 E-value=1.9e-08 Score=94.11 Aligned_cols=57 Identities=37% Similarity=0.358 Sum_probs=36.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~ 303 (561)
.++.+.|.+|+|||+|++.+.+..+.....+.+ +.. -...+.. ....+.+|||+|.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FEN-YVADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-ccc-eEEEEEECCEEEEEEEEeCCCch
Confidence 468999999999999999999876544332221 111 0011222 22367899999954
No 391
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.72 E-value=1.7e-08 Score=109.69 Aligned_cols=150 Identities=14% Similarity=0.026 Sum_probs=83.2
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcCCCccc-----------CCCcc----------------------cccCccc--
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAE-----------NFPFC----------------------TIDPNEN-- 136 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~-----------~~~~~----------------------T~~~~~~-- 136 (561)
+....++|+++|.+++|||||+++|......+. ..+|+ |.+....
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 345568999999999999999999975431110 11333 3332211
Q ss_pred cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch--
Q psy17315 137 NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS-- 213 (561)
Q Consensus 137 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-- 213 (561)
.....++.|+||||... +.......+..+|++++|+|+...- .....+.+. .+..+. ++
T Consensus 103 ~~~~~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~G~-------~~qt~~~~~----l~~~lg~~~iI 164 (474)
T PRK05124 103 STEKRKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARKGV-------LDQTRRHSF----IATLLGIKHLV 164 (474)
T ss_pred ccCCcEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCCCc-------cccchHHHH----HHHHhCCCceE
Confidence 12345799999999532 2222334468999999999975310 000011111 111222 22
Q ss_pred -hhccccccCcCCCC-CccHHHHHHHhhhc---CCCcEEEEEccCCCCHHH
Q psy17315 214 -VDAKADSKKKMGPK-KTDEGEKKMLLGRV---GTNLKVGIVGVPNVGKST 259 (561)
Q Consensus 214 -v~NK~D~~~~~~~~-~~~~~~l~~l~~~~---~~~~~i~isg~~~~Gks~ 259 (561)
++||+|+....... ......+..+.... ...+.+++||++|.|+..
T Consensus 165 vvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 165 VAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred EEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccc
Confidence 89999997422100 00111122222222 246789999999999864
No 392
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.71 E-value=1.5e-08 Score=94.42 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=42.7
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
|.+.|.+|+||++|++.+.+..+..... ++.|. +. ..+...+..+.+|||+|.. .+..+...+.++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~-pt~g~-~~-~~i~~~~~~l~i~Dt~G~~-~~~~~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV-PTTGF-NS-VAIPTQDAIMELLEIGGSQ-NLRKYWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc-ccCCc-ce-EEEeeCCeEEEEEECCCCc-chhHHHHHHHhhCC
Confidence 6799999999999999999876543322 22232 11 1222334568899999953 35555555444443
No 393
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.71 E-value=2.3e-08 Score=96.41 Aligned_cols=150 Identities=11% Similarity=0.041 Sum_probs=85.9
Q ss_pred EccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhh
Q psy17315 250 VGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSE 327 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~ 327 (561)
.|..|+||++|++.+....|.....+. .|. ..... .+......+.+|||+|- +.+..+...+.++...++..+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~T-ig~~~~~~~~~~~~~~~~l~iwDt~G~-e~~~~l~~~~~~~ad~~ilV~--- 75 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVAT-LGVEVHPLVFHTNRGPIRFNVWDTAGQ-EKFGGLRDGYYIQGQCAIIMF--- 75 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCc-eeEEEEEEEEEECCEEEEEEEEECCCc-hhhhhhhHHHhcCCCEEEEEE---
Confidence 478999999999999976554332222 221 11111 11112346889999995 446666666655544333322
Q ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHH
Q psy17315 328 VWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLP 407 (561)
Q Consensus 328 ~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~ 407 (561)
++.+.+.+..+..|..+ +.... ...|+++|+||+|.. . .....+
T Consensus 76 -------------D~t~~~S~~~i~~w~~~------------------i~~~~--~~~piilvgNK~Dl~--~-~~v~~~ 119 (200)
T smart00176 76 -------------DVTARVTYKNVPNWHRD------------------LVRVC--ENIPIVLCGNKVDVK--D-RKVKAK 119 (200)
T ss_pred -------------ECCChHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECcccc--c-ccCCHH
Confidence 33444555545444433 11111 368999999999642 1 111122
Q ss_pred HHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 408 KIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 408 ~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.+ ++.... +.+++.+||++|.|+.++.+...+.
T Consensus 120 ~~-~~~~~~--~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 120 SI-TFHRKK--NLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HH-HHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 22 333332 5789999999999988876554443
No 394
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.71 E-value=4.1e-08 Score=96.12 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=88.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.++|..|+||++|++.+.+..|.....+.+..... ..+.. ....|.+|||+|- +.++.+...+.+...-++.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~--~~~~~~~~~v~L~iwDt~G~-e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT--ASFEIDKRRIELNMWDTSGS-SYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE--EEEEECCEEEEEEEEeCCCc-HHHHHHhHHhccCCCEEEE
Confidence 36899999999999999999988766544443321110 11222 2346888999994 4466666655544443333
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK- 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~- 401 (561)
.+ ++.+.+.+..+...... .+... ....|+|+|+||+|......
T Consensus 79 vf----------------dis~~~Sf~~i~~~w~~-----------------~~~~~--~~~~piiLVgnK~DL~~~~~~ 123 (222)
T cd04173 79 CF----------------DISRPETLDSVLKKWQG-----------------ETQEF--CPNAKVVLVGCKLDMRTDLAT 123 (222)
T ss_pred EE----------------ECCCHHHHHHHHHHHHH-----------------HHHhh--CCCCCEEEEEECcccccchhh
Confidence 33 33444555444321111 01111 14689999999996421000
Q ss_pred -------c--cchHHHHHHHHHhcCCC-CeEEeechhhhhh-hCCCCHHH
Q psy17315 402 -------K--NKWLPKIKEWVDANDPG-ATIIPFSGVFEHQ-LVDMPDDE 440 (561)
Q Consensus 402 -------~--~~~~~~l~~~~~~~~~~-~~vi~iSA~~~~g-l~~L~~~~ 440 (561)
. ....++..++++.. + .+++.+||+++.+ +.++.+..
T Consensus 124 ~~~~~~~~~~pIs~e~g~~~ak~~--~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 124 LRELSKQRLIPVTHEQGTVLAKQV--GAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred hhhhhhccCCccCHHHHHHHHHHc--CCCEEEEcCCCcCCcCHHHHHHHH
Confidence 0 01123333444443 4 4799999998874 87775443
No 395
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.71 E-value=1.3e-08 Score=102.92 Aligned_cols=85 Identities=22% Similarity=0.300 Sum_probs=57.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccc---cccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGL---GNAFLS 167 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~---~~~~l~ 167 (561)
...++|+++|.+||||||++|+|+|.. ..++.++++|..+... ...+..+.+|||||+.......... ...++.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 345799999999999999999999988 5667776665544322 2245689999999998643211111 111111
Q ss_pred ccccCCEEEEEe
Q psy17315 168 HISACDAIFHLC 179 (561)
Q Consensus 168 ~i~~~D~il~Vv 179 (561)
. ...|++++|.
T Consensus 116 ~-~g~DvVLyV~ 126 (313)
T TIGR00991 116 G-KTIDVLLYVD 126 (313)
T ss_pred c-CCCCEEEEEe
Confidence 1 3689999995
No 396
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.70 E-value=1.8e-08 Score=94.16 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=78.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
++.+.|.+|+|||+|++.+.+..+.....+...........+......+.+|||+|-. .+..+.....+...-.+..+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~~~~~~~~~~~~ilv~- 79 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE-DYDRLRPLSYPMTDVFLICF- 79 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc-cccccccccCCCCCEEEEEE-
Confidence 6899999999999999999988654332222111100000111112346789999943 23332222211111111111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh----
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK---- 401 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~---- 401 (561)
++.+.+.+..+... | ...+... ....|+++|+||+|......
T Consensus 80 ---------------~~~~~~s~~~~~~~-------------~----~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~ 125 (174)
T cd04135 80 ---------------SVVNPASFQNVKEE-------------W----VPELKEY--APNVPYLLVGTQIDLRDDPKTLAR 125 (174)
T ss_pred ---------------ECCCHHHHHHHHHH-------------H----HHHHHhh--CCCCCEEEEeEchhhhcChhhHHH
Confidence 11222222212110 0 1112222 25799999999996421100
Q ss_pred ------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 ------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+...+++... ...+++.+||++|.|++++.++.
T Consensus 126 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 126 LNDMKEKPVTVEQGQKLAKEI-GAHCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred HhhccCCCCCHHHHHHHHHHc-CCCEEEEecCCcCCCHHHHHHHH
Confidence 011122333444433 12478999999999998885544
No 397
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.70 E-value=8.2e-10 Score=100.97 Aligned_cols=54 Identities=43% Similarity=0.485 Sum_probs=34.3
Q ss_pred EEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHH
Q psy17315 249 IVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~ 304 (561)
+.|.+|+|||+|++.+.+.... ..+..++++ +... .....+..+.+|||||+.+
T Consensus 2 l~G~~~~GKssl~~~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~ 57 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDA--IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEP 57 (157)
T ss_pred ccCCCCCCHHHHHHHHhCCcEE--eecCCCCceeCceeEEEEECCeEEEEEECCCCCC
Confidence 6799999999999999986321 122223333 2111 2223345688999999754
No 398
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.70 E-value=5.9e-08 Score=100.01 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=61.5
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-hhhccc
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-SVDAKA 218 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~v~NK~ 218 (561)
+..+.|+||+|+..... ..+..||++++|++... ...+........+... .|+||+
T Consensus 148 g~d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~-------------gd~iq~~k~gi~E~aDIiVVNKa 204 (332)
T PRK09435 148 GYDVILVETVGVGQSET----------AVAGMVDFFLLLQLPGA-------------GDELQGIKKGIMELADLIVINKA 204 (332)
T ss_pred CCCEEEEECCCCccchh----------HHHHhCCEEEEEecCCc-------------hHHHHHHHhhhhhhhheEEeehh
Confidence 34689999999973221 12456899999985221 1112222221222222 389999
Q ss_pred cccCcCCCCCccHHHHHHHhhhc------CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 219 DSKKKMGPKKTDEGEKKMLLGRV------GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 219 D~~~~~~~~~~~~~~l~~l~~~~------~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
|+.+..+... ....+...+... ...+.+.+|+.++.|++.|++.+.+..
T Consensus 205 Dl~~~~~a~~-~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 205 DGDNKTAARR-AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred cccchhHHHH-HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 9885432111 111222222221 224789999999999999999998863
No 399
>PLN03126 Elongation factor Tu; Provisional
Probab=98.70 E-value=3.2e-08 Score=107.25 Aligned_cols=145 Identities=14% Similarity=0.079 Sum_probs=82.8
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCC----------------cccCCCcccccCccc--cccCCeEEEEeCCCcccC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSA----------------AAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~----------------~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~ 154 (561)
....++++++|.+++|||||+++|++... ......|.|.+.... ...+..+.++||||....
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45568899999999999999999985321 112234555543221 123457899999997532
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCcc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~ 230 (561)
. ......+..+|++++|+|+...- .....+.+ ..+..+..+ +.||+|+..........
T Consensus 158 ~-------~~~~~g~~~aD~ailVVda~~G~-------~~qt~e~~----~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i 219 (478)
T PLN03126 158 V-------KNMITGAAQMDGAILVVSGADGP-------MPQTKEHI----LLAKQVGVPNMVVFLNKQDQVDDEELLELV 219 (478)
T ss_pred H-------HHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHH----HHHHHcCCCeEEEEEecccccCHHHHHHHH
Confidence 2 23345567899999999875210 01111111 122223332 69999987421111111
Q ss_pred HHHHHHHhhhc----CCCcEEEEEccCCC
Q psy17315 231 EGEKKMLLGRV----GTNLKVGIVGVPNV 255 (561)
Q Consensus 231 ~~~l~~l~~~~----~~~~~i~isg~~~~ 255 (561)
..++..++... ...+.+++||.+|.
T Consensus 220 ~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 220 ELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 12333443332 24567889998874
No 400
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.70 E-value=2.3e-08 Score=87.46 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCc----ccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAA----AENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~----~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
||.++|.+|||||||+++|.+.... .....+.+...... ......+.++|++|....... ....+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~~~~ 73 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ-------HQFFLKK 73 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT-------SHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc-------ccchhhc
Confidence 6899999999999999999987733 11222222211111 111224789999998532221 1112688
Q ss_pred CCEEEEEeccc
Q psy17315 172 CDAIFHLCKEK 182 (561)
Q Consensus 172 ~D~il~VvD~~ 182 (561)
+|++++|+|.+
T Consensus 74 ~d~~ilv~D~s 84 (119)
T PF08477_consen 74 ADAVILVYDLS 84 (119)
T ss_dssp SCEEEEEEECC
T ss_pred CcEEEEEEcCC
Confidence 99999999876
No 401
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.70 E-value=2e-08 Score=93.37 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=37.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
+|.+.|.+|+|||+|++++++..+.....+...........+......+.+|||||.++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 68899999999999999999986633333221111101111111234588999999643
No 402
>KOG0098|consensus
Probab=98.70 E-value=5.3e-08 Score=89.49 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=96.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc------cccCCeEEEEeCCCcccCCccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
..|+.++|-.+||||.|+-+.+.+. .++.+ .|...-.+ ...+..+++|||.|.....+ + .-+.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs----v---~~sy 75 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS----V---TRSY 75 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH----H---HHHH
Confidence 3689999999999999999999876 33222 23222111 12234689999999865442 1 2344
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
.|.+-..|+|.|.+. ...++.++.+...++....+ ++||+|+..+.....+.-+.+.+-.+.
T Consensus 76 Yr~a~GalLVydit~----------r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-- 143 (216)
T KOG0098|consen 76 YRGAAGALLVYDITR----------RESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-- 143 (216)
T ss_pred hccCcceEEEEEccc----------hhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc--
Confidence 688888899998653 34566666555444444322 899999998876544333333333222
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.-.-.|+++++|+.+.|......
T Consensus 144 --ifmETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 144 --IFMETSAKTAENVEEAFINTAKE 166 (216)
T ss_pred --eeehhhhhhhhhHHHHHHHHHHH
Confidence 23478999999999887766554
No 403
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.69 E-value=1.2e-08 Score=93.47 Aligned_cols=144 Identities=18% Similarity=0.218 Sum_probs=75.8
Q ss_pred EEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccc-cchhhhhHhhhcccHHHHHHHHH-----HHHHHHhhCCcccc
Q psy17315 249 IVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPV-RDIEIINEELRLKDVEHIEKEIN-----KIEKLVQRGDKKLK 321 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~-~~~~~~~~el~l~Dt~Gi~~~~~-----~l~~~~~~~~~~~~ 321 (561)
+.|.+|+|||+|++.+++..+..+.. ++++ +.. ..+.+.+..+.+|||||...... .+...+...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~----- 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNW---PGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG----- 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCC---CCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-----
Confidence 46999999999999999875433333 2332 222 22334445789999999743211 111111110
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..++++..|++... .+.....+..... ..+|+++|+||+|. ..
T Consensus 73 ---------------------~~~d~vi~v~d~~~------------~~~~~~~~~~~~~-~~~~~iiv~NK~Dl--~~- 115 (158)
T cd01879 73 ---------------------EKPDLIVNVVDATN------------LERNLYLTLQLLE-LGLPVVVALNMIDE--AE- 115 (158)
T ss_pred ---------------------CCCcEEEEEeeCCc------------chhHHHHHHHHHH-cCCCEEEEEehhhh--cc-
Confidence 01122222222100 0111122222222 47999999999954 32
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.........++.... +.+++++||.++.|+.++.+.
T Consensus 116 ~~~~~~~~~~~~~~~--~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 116 KRGIKIDLDKLSELL--GVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred cccchhhHHHHHHhh--CCCeEEEEccCCCCHHHHHHH
Confidence 111112222333322 568999999999998877443
No 404
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.69 E-value=1.4e-09 Score=99.28 Aligned_cols=149 Identities=27% Similarity=0.318 Sum_probs=78.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++.+..+ ......++++ +... .+...+..+.+|||||+......+....... . .
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~---~-~ 75 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR--AIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIER---A-R 75 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce--EeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHH---H-H
Confidence 4789999999999999999998742 1222233443 2221 2233345788999999643211111100000 0 0
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.. ...++++..|.+.. ...+..+...+.. ...+|+++|+||+|. ....
T Consensus 76 ~~-----------------~~~~~~~v~v~d~~----------~~~~~~~~~~~~~---~~~~~vi~v~nK~D~--~~~~ 123 (157)
T cd04164 76 EA-----------------IEEADLVLFVIDAS----------RGLDEEDLEILEL---PADKPIIVVLNKSDL--LPDS 123 (157)
T ss_pred HH-----------------HhhCCEEEEEEECC----------CCCCHHHHHHHHh---hcCCCEEEEEEchhc--CCcc
Confidence 00 01112222221110 0123333333332 257999999999954 3211
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
. . .... ...+++++||+++.|+.++.+..
T Consensus 124 ~-~------~~~~--~~~~~~~~Sa~~~~~v~~l~~~l 152 (157)
T cd04164 124 E-L------LSLL--AGKPIIAISAKTGEGLDELKEAL 152 (157)
T ss_pred c-c------cccc--CCCceEEEECCCCCCHHHHHHHH
Confidence 1 1 1111 25789999999999988875543
No 405
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.69 E-value=2.4e-09 Score=119.15 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=80.1
Q ss_pred ccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHH-----HHHHHHhhCCccccch
Q psy17315 251 GVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEIN-----KIEKLVQRGDKKLKPE 323 (561)
Q Consensus 251 g~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~-----~l~~~~~~~~~~~~~~ 323 (561)
|.+|+|||+|+|.+++..+..+++ +|++ +... .+...+.++.+|||||.++... .+.+.+...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~---pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~------- 70 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNW---PGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLN------- 70 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCC---CCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhh-------
Confidence 789999999999999986544444 4443 3332 2334455789999999754211 011111000
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
..+|++..|.|.. . .+.......+... .++|+++|+||+|.. +. .
T Consensus 71 -------------------~~aDvvI~VvDat-----------~-ler~l~l~~ql~~-~~~PiIIVlNK~Dl~--~~-~ 115 (591)
T TIGR00437 71 -------------------EKPDLVVNVVDAS-----------N-LERNLYLTLQLLE-LGIPMILALNLVDEA--EK-K 115 (591)
T ss_pred -------------------cCCCEEEEEecCC-----------c-chhhHHHHHHHHh-cCCCEEEEEehhHHH--Hh-C
Confidence 0112222222210 0 1112222222222 479999999999653 21 1
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+++.+.. +.+++++||++|.|++++.+...+
T Consensus 116 ~i~~d~~~L~~~l--g~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 116 GIRIDEEKLEERL--GVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred CChhhHHHHHHHc--CCCEEEEECCCCCCHHHHHHHHHH
Confidence 1112233333332 678999999999999998776544
No 406
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.68 E-value=2e-08 Score=93.15 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=78.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc--cchhh---hhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV--RDIEI---INEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~--~~~~~---~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
+.+.+.|.+|+||++|++.+.+..+...... +++... ..+.. .+..+.+|||||... +..+........
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-~~~~~~~~~~~~-- 74 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAG---GITQHIGAFEVPAEVLKIPGITFIDTPGHEA-FTNMRARGASLT-- 74 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCC---CeEEeeccEEEecccCCcceEEEEeCCCcHH-HHHHHHHHHhhc--
Confidence 4689999999999999999998755443221 222111 11222 245788999999643 322222211111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
|++..|++... ....+....+..... ..+|+++|+||+|....
T Consensus 75 --------------------------d~il~v~d~~~----------~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 75 --------------------------DIAILVVAADD----------GVMPQTIEAIKLAKA-ANVPFIVALNKIDKPNA 117 (168)
T ss_pred --------------------------CEEEEEEECCC----------CccHHHHHHHHHHHH-cCCCEEEEEEceecccc
Confidence 22111111100 011122222322222 47899999999954211
Q ss_pred hhccchHHHHHHHHHh----cCCCCeEEeechhhhhhhCCCCHH
Q psy17315 400 KKKNKWLPKIKEWVDA----NDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~----~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
. .......+.++... .....+++++||+++.|+.+|.+.
T Consensus 118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T cd01887 118 N-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred c-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHH
Confidence 0 11122223222111 112367999999999998887544
No 407
>KOG0086|consensus
Probab=98.68 E-value=4.5e-08 Score=86.74 Aligned_cols=152 Identities=15% Similarity=0.222 Sum_probs=100.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc--ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV--NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~--dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
-.++.+.|..|+|||-|+..+.+..|.+.. +|+-|-- ..+..+-.....+++|||+| +++++.+.+.+++++...+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDds-sHTiGveFgSrIinVGgK~vKLQIWDTAG-QErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDS-SHTIGVEFGSRIVNVGGKTVKLQIWDTAG-QERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccc-cceeeeeecceeeeecCcEEEEEEeeccc-HHHHHHHHHHHhccccceE
Confidence 357899999999999999999999876653 3322210 01111111223688999999 6779999999998876655
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ +++..|....+-.|+.+ . +.+.. .+.-+|++.||.|.+..
T Consensus 87 LVY----------------D~TsrdsfnaLtnWL~D--a----------------R~lAs-~nIvviL~GnKkDL~~~-- 129 (214)
T KOG0086|consen 87 LVY----------------DITSRDSFNALTNWLTD--A----------------RTLAS-PNIVVILCGNKKDLDPE-- 129 (214)
T ss_pred EEE----------------eccchhhHHHHHHHHHH--H----------------HhhCC-CcEEEEEeCChhhcChh--
Confidence 444 55666887777777766 1 11111 34556788999965432
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCC
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDM 436 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L 436 (561)
.+....+..+++.+. ...+..+||++|.++++.
T Consensus 130 R~VtflEAs~FaqEn--el~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 130 REVTFLEASRFAQEN--ELMFLETSALTGENVEEA 162 (214)
T ss_pred hhhhHHHHHhhhccc--ceeeeeecccccccHHHH
Confidence 344444455555543 346788999999997654
No 408
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.68 E-value=6.8e-09 Score=98.05 Aligned_cols=152 Identities=17% Similarity=0.071 Sum_probs=79.4
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCccccc-------------CCc-cccc-cchhhhhHhhhcccHHHHHHHHHHHHH
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV-------------EGE-VNPV-RDIEIINEELRLKDVEHIEKEINKIEK 311 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~-------------~gt-~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~ 311 (561)
|.+.|.+|+|||+|+|.+++........... .+. .+.. ..+...+..+.+|||||..+. .....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-~~~~~ 80 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF-SSEVI 80 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-HHHHH
Confidence 7899999999999999999986443221111 111 1111 112223456889999997542 22222
Q ss_pred HHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEe
Q psy17315 312 LVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLV 391 (561)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~ 391 (561)
...+.. +.+..+++... .......+.+..... ..+|+++|+
T Consensus 81 ~~~~~~----------------------------d~~i~v~d~~~----------~~~~~~~~~~~~~~~-~~~~i~iv~ 121 (189)
T cd00881 81 RGLSVS----------------------------DGAILVVDANE----------GVQPQTREHLRIARE-GGLPIIVAI 121 (189)
T ss_pred HHHHhc----------------------------CEEEEEEECCC----------CCcHHHHHHHHHHHH-CCCCeEEEE
Confidence 211111 22221211100 111222233332222 479999999
Q ss_pred cCChhhhhhhccchHHHHHHHHHhc------------CCCCeEEeechhhhhhhCCCCH
Q psy17315 392 NLSAKDYIKKKNKWLPKIKEWVDAN------------DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 392 NK~D~d~~~~~~~~~~~l~~~~~~~------------~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
||+|...........+.+++.++.. ....+++++||+.|.|+.++..
T Consensus 122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~ 180 (189)
T cd00881 122 NKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLE 180 (189)
T ss_pred ECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHH
Confidence 9995421011112233444444331 1257899999999999877743
No 409
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.68 E-value=1.5e-08 Score=102.29 Aligned_cols=146 Identities=14% Similarity=0.099 Sum_probs=77.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC---cccC-CCccc--------------ccCccc--cccCCeEEEEeCCCcccCCcc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA---AAEN-FPFCT--------------IDPNEN--NKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~---~~~~-~~~~T--------------~~~~~~--~~~~~~i~l~DtpG~~~~~~~ 157 (561)
+|+++|.+|+|||||+|+|.+... ..+. ..|+| ...... .+.+..+.++||||.....
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 389999999999999999975431 1111 12222 111111 1234578999999985322
Q ss_pred ccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHH
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l 234 (561)
......++.+|.+++|+|++... .... ..+-+.+.....+ +.||+|.... .....+
T Consensus 79 -----~~~~~~l~~aD~~i~Vvd~~~g~-------~~~~----~~~~~~~~~~~~p~iivvNK~D~~~~-----~~~~~~ 137 (268)
T cd04170 79 -----GETRAALRAADAALVVVSAQSGV-------EVGT----EKLWEFADEAGIPRIIFINKMDRERA-----DFDKTL 137 (268)
T ss_pred -----HHHHHHHHHCCEEEEEEeCCCCC-------CHHH----HHHHHHHHHcCCCEEEEEECCccCCC-----CHHHHH
Confidence 22345568899999999876321 0000 1111122233333 8999998743 122334
Q ss_pred HHHhhhcCCC-cEEEEEccCCCCHHHHHHHHHh
Q psy17315 235 KMLLGRVGTN-LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 235 ~~l~~~~~~~-~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..+...+... ..+.+....|.|...+.+.+..
T Consensus 138 ~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~ 170 (268)
T cd04170 138 AALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTE 170 (268)
T ss_pred HHHHHHhCCCeEEEEecccCCCceeEEEEcccC
Confidence 4444433221 2233334555555444444433
No 410
>KOG0071|consensus
Probab=98.68 E-value=6.7e-08 Score=84.62 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=104.1
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
......+++..+|+.++||||++-.|.-.. ..+.+..|...+..+ +....+.++|..|...-+ .-+-.+.
T Consensus 12 ~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVt--ykN~kfNvwdvGGqd~iR-------plWrhYy 82 (180)
T KOG0071|consen 12 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT--YKNVKFNVWDVGGQDKIR-------PLWRHYY 82 (180)
T ss_pred HhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEE--eeeeEEeeeeccCchhhh-------HHHHhhc
Confidence 344557899999999999999999998655 555566666555443 334568899999875322 2233445
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----------hhccccccCcCCCCCccHHHHHHHh-
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----------VDAKADSKKKMGPKKTDEGEKKMLL- 238 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----------v~NK~D~~~~~~~~~~~~~~l~~l~- 238 (561)
.....++||+|+..+ +.++.-+++|...... .+||.|++.++.+. ++.+.+
T Consensus 83 ~gtqglIFV~Dsa~~-------------dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pq-----ei~d~le 144 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADR-------------DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQ-----EIQDKLE 144 (180)
T ss_pred cCCceEEEEEeccch-------------hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHH-----HHHHHhc
Confidence 677889999998632 2333344444443332 79999999776653 223322
Q ss_pred ---hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 239 ---GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 239 ---~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.|...+.++.+|.|.-+-+.||.+..
T Consensus 145 Le~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 145 LERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred cccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 233578899999999999999999998763
No 411
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.67 E-value=6.7e-08 Score=107.42 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=90.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCc------cc----------CCCcccccCccc--cccCCeEEEEeCCCcccCCcccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAA------AE----------NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQ 159 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~------~~----------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~ 159 (561)
.|+++|..++|||||+++|+..... +. ..-|.|...... .+.+..+.++||||.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 5999999999999999999853211 11 112444432211 2345679999999985332
Q ss_pred ccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHH
Q psy17315 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 160 ~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
......++.+|.+++|+|+... ..... ..+-..+.....+ +.||+|+..... . .....+.+
T Consensus 79 ---~ev~~~l~~aD~alLVVDa~~G-------~~~qT----~~~l~~a~~~~ip~IVviNKiD~~~a~~-~-~v~~ei~~ 142 (594)
T TIGR01394 79 ---GEVERVLGMVDGVLLLVDASEG-------PMPQT----RFVLKKALELGLKPIVVINKIDRPSARP-D-EVVDEVFD 142 (594)
T ss_pred ---HHHHHHHHhCCEEEEEEeCCCC-------CcHHH----HHHHHHHHHCCCCEEEEEECCCCCCcCH-H-HHHHHHHH
Confidence 2234556889999999988531 00011 1111122222223 899999864211 0 01122222
Q ss_pred Hhhhc------CCCcEEEEEccCCC----------CHHHHHHHHHhhccC
Q psy17315 237 LLGRV------GTNLKVGIVGVPNV----------GKSTFFNVLTKRAFE 270 (561)
Q Consensus 237 l~~~~------~~~~~i~isg~~~~----------Gks~l~~~l~~~~~~ 270 (561)
+.... ...+.+.+||++|. |+..|++.+.+..+.
T Consensus 143 l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 143 LFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred HHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 22111 12467899999995 899999999987643
No 412
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.65 E-value=5.2e-08 Score=94.16 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc----ccCCeEEEEeCCCcccCCccccccccccccccccC-
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC- 172 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~- 172 (561)
+|.++|.+|||||||+++|+...... .++.++....... ..+..+.++||||..... ..+...++.+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~-t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~-------~~~~~~~~~~~ 73 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS-TVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLR-------DKLLETLKNSA 73 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC-ccCcEeecceEEEeecCCCCceEEEEECCCCHHHH-------HHHHHHHhccC
Confidence 58999999999999999999765211 1222211111101 124568999999975432 2344556777
Q ss_pred CEEEEEecccc
Q psy17315 173 DAIFHLCKEKL 183 (561)
Q Consensus 173 D~il~VvD~~~ 183 (561)
+++++|+|+..
T Consensus 74 ~~vV~VvD~~~ 84 (203)
T cd04105 74 KGIVFVVDSAT 84 (203)
T ss_pred CEEEEEEECcc
Confidence 99999999863
No 413
>KOG0087|consensus
Probab=98.65 E-value=1.7e-07 Score=88.01 Aligned_cols=151 Identities=16% Similarity=0.109 Sum_probs=97.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCC-----CcccccCccccccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENF-----PFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~-----~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...||.++|-|+||||-|+.+.+......... -+.|+..... ......++|||+|..+.+.- .-.+.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd-~k~vkaqIWDTAGQERyrAi-------tSaYY 84 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVD-GKTVKAQIWDTAGQERYRAI-------TSAYY 84 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeec-CcEEEEeeecccchhhhccc-------cchhh
Confidence 45789999999999999999999876332222 2333332221 11235799999998755421 12345
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
|.|-..++|.|.+. ...++++..+..+|++.... |+||+|+.+.......+...+..- ..
T Consensus 85 rgAvGAllVYDITr----------~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~----~~ 150 (222)
T KOG0087|consen 85 RGAVGALLVYDITR----------RQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK----EG 150 (222)
T ss_pred cccceeEEEEechh----------HHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHh----cC
Confidence 88888999998752 23455666655566555433 899999997544433233233222 22
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
-.-+-+||+.++++...+..+...
T Consensus 151 l~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 151 LFFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred ceEEEecccccccHHHHHHHHHHH
Confidence 356889999999998888777665
No 414
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.65 E-value=5.1e-09 Score=98.41 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=32.8
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
..+|+++|+||+|..... .....+++.+.+. .+..+++++||++|.|+++|.+.
T Consensus 118 ~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gi~~l~~~ 171 (179)
T cd01890 118 NNLEIIPVINKIDLPSAD-PERVKQQIEDVLG--LDPSEAILVSAKTGLGVEDLLEA 171 (179)
T ss_pred cCCCEEEEEECCCCCcCC-HHHHHHHHHHHhC--CCcccEEEeeccCCCCHHHHHHH
Confidence 468999999999642110 1111233333221 12235899999999998887544
No 415
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.64 E-value=4.3e-08 Score=94.10 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=82.9
Q ss_pred cEEEEEccCCCCHHHHHH-HHHhhccCCC----cccccCCcccccc-----------chhhhhHhhhcccHHHHHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFN-VLTKRAFEDD----DVTHVEGEVNPVR-----------DIEIINEELRLKDVEHIEKEINK 308 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~-~l~~~~~~~~----~v~~~~gt~dp~~-----------~~~~~~~el~l~Dt~Gi~~~~~~ 308 (561)
.+|.+.|..|+||++|+. .+.+..|... .+.++-|..+... .+......+.+|||+|.++.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 479999999999999995 6665543221 1111111111000 01111246889999997542
Q ss_pred HHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCce
Q psy17315 309 IEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQ 387 (561)
Q Consensus 309 l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ 387 (561)
+...+.++..-++..+ ++.+.+.+..+.. |... +.... ...|+
T Consensus 80 ~~~~~~~~ad~iilv~----------------d~t~~~Sf~~~~~~w~~~------------------i~~~~--~~~pi 123 (195)
T cd01873 80 DRRFAYGRSDVVLLCF----------------SIASPNSLRNVKTMWYPE------------------IRHFC--PRVPV 123 (195)
T ss_pred hhcccCCCCCEEEEEE----------------ECCChhHHHHHHHHHHHH------------------HHHhC--CCCCE
Confidence 2222322232222222 3333444444432 3222 11111 36799
Q ss_pred EEEecCChhhhhh-----------------hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 388 IYLVNLSAKDYIK-----------------KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 388 iiv~NK~D~d~~~-----------------~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
++|+||+|..... ......++.+++++.. +.+++.+||++|.|++++.+.
T Consensus 124 ilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~--~~~~~E~SAkt~~~V~e~F~~ 190 (195)
T cd01873 124 ILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKEL--GIPYYETSVVTQFGVKDVFDN 190 (195)
T ss_pred EEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHh--CCEEEEcCCCCCCCHHHHHHH
Confidence 9999999642100 0122344555666554 678999999999998877543
No 416
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.64 E-value=4.1e-08 Score=98.82 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=50.3
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC---CcccCC-----Cc-ccccCccc---------------cccCCeEEEEeCCCccc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS---AAAENF-----PF-CTIDPNEN---------------NKVPAFLNVVDIAGLVK 153 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~---~~~~~~-----~~-~T~~~~~~---------------~~~~~~i~l~DtpG~~~ 153 (561)
.|+++|.+|+|||||+++|+... ...+.. .| ++.+.... .+.+..+.++||||...
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 59999999999999999998542 111111 11 11221110 22345799999999753
Q ss_pred CCccccccccccccccccCCEEEEEeccc
Q psy17315 154 GAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 154 ~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
... .....++.+|++++|+|++
T Consensus 84 f~~-------~~~~~l~~aD~~IlVvda~ 105 (267)
T cd04169 84 FSE-------DTYRTLTAVDSAVMVIDAA 105 (267)
T ss_pred HHH-------HHHHHHHHCCEEEEEEECC
Confidence 221 2344568899999999886
No 417
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.64 E-value=2.1e-08 Score=92.21 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCc--cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-Cc---ccCCCcc
Q psy17315 56 KRRKQHLSDKLRPK--ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AA---AENFPFC 129 (561)
Q Consensus 56 ~~w~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~---~~~~~~~ 129 (561)
++|++.+++-+..+ +++....+...... .. .+..++++|.+|||||||+|+|.+.. .. ++..-+.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~--------~l-~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~r 72 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKE--------LL-KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGR 72 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHH--------HH-TTSEEEEECSTTSSHHHHHHHHHTSS----S--------
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHH--------Hh-cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCC
Confidence 67899999988887 55554433322111 11 12578999999999999999999874 33 3333222
Q ss_pred cccCccc---cccCCeEEEEeCCCcccCC
Q psy17315 130 TIDPNEN---NKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 130 T~~~~~~---~~~~~~i~l~DtpG~~~~~ 155 (561)
.+++++. ...+....++||||+....
T Consensus 73 GkHTTt~~~l~~l~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 73 GKHTTTHRELFPLPDGGYIIDTPGFRSFG 101 (161)
T ss_dssp ------SEEEEEETTSEEEECSHHHHT--
T ss_pred CcccCCCeeEEecCCCcEEEECCCCCccc
Confidence 2222221 3456679999999997543
No 418
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.64 E-value=1.8e-08 Score=97.78 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=31.9
Q ss_pred CceEEEecCChhhhhhh--ccchHHHHHHHHHhcC-CCCeEEeechhhhhhhCCCC
Q psy17315 385 KTQIYLVNLSAKDYIKK--KNKWLPKIKEWVDAND-PGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 385 kP~iiv~NK~D~d~~~~--~~~~~~~l~~~~~~~~-~~~~vi~iSA~~~~gl~~L~ 437 (561)
+|+|+|+||+|...... ......++++++.... +..+++++||++|.|+.+..
T Consensus 131 ~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 131 RHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred CcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 45788999996421100 0122334444444331 23569999999999998875
No 419
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.63 E-value=4.9e-08 Score=104.29 Aligned_cols=145 Identities=14% Similarity=0.003 Sum_probs=79.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcc---------------c------------------CCCcccccCccc--cccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA---------------E------------------NFPFCTIDPNEN--NKVPA 141 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~---------------~------------------~~~~~T~~~~~~--~~~~~ 141 (561)
++|+++|.+++|||||+++|......+ + ..-|.|++.... ...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999996432100 0 011333443221 12344
Q ss_pred eEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhcc
Q psy17315 142 FLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAK 217 (561)
Q Consensus 142 ~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK 217 (561)
.+.++||||.... .......+..+|++++|+|+...- .....+.+. .+..+.. + +.||
T Consensus 81 ~~~liDtPGh~~f-------~~~~~~~~~~aD~allVVda~~G~-------~~qt~~~~~----~~~~~~~~~iivviNK 142 (406)
T TIGR02034 81 KFIVADTPGHEQY-------TRNMATGASTADLAVLLVDARKGV-------LEQTRRHSY----IASLLGIRHVVLAVNK 142 (406)
T ss_pred EEEEEeCCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCC-------ccccHHHHH----HHHHcCCCcEEEEEEe
Confidence 7899999996432 122334568899999999975311 000011111 1222222 2 8999
Q ss_pred ccccCcCCCC-CccHHHHHHHhhhc--CCCcEEEEEccCCCCHHH
Q psy17315 218 ADSKKKMGPK-KTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKST 259 (561)
Q Consensus 218 ~D~~~~~~~~-~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~ 259 (561)
+|........ ......+..+.... ...+.+++||.+|.|+..
T Consensus 143 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 143 MDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9997422100 00111222222222 234689999999999763
No 420
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.63 E-value=1.7e-08 Score=92.87 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=35.2
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
...|+++|+||+|.............+...++......+++++||+++.++.++.+.
T Consensus 109 ~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~ 165 (170)
T cd01876 109 LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRAL 165 (170)
T ss_pred cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHH
Confidence 468999999999642111112223334444431223578999999999998777544
No 421
>KOG0088|consensus
Probab=98.63 E-value=1.1e-07 Score=84.76 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCC-----cccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSA-----AAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~-----~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
...+|+.++|---||||||+-+....+. .+-...|.++..+.. ....++.+|||+|...... ++.- +
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAGQErfHA----LGPI---Y 82 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAGQERFHA----LGPI---Y 82 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccchHhhhc----cCce---E
Confidence 3457999999999999999988775441 122223445544432 2345789999999865442 2222 3
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
.|.++..++|.|.++++ .|.++..+-.+++.+.-. |+||+|+.+....+.........- -
T Consensus 83 YRgSnGalLVyDITDrd----------SFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAes----v 148 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRD----------SFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAES----V 148 (218)
T ss_pred EeCCCceEEEEeccchH----------HHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHh----h
Confidence 58899999999887544 344555444445444333 899999986655432222111111 1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
....+..|++.|.|+++||..|+....+.
T Consensus 149 GA~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 149 GALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred chhheecccccccCHHHHHHHHHHHHHHH
Confidence 22457899999999999999998876443
No 422
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.63 E-value=8.2e-08 Score=109.39 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC------cccC------------CCcccccCccc--cccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA------AAEN------------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~------~~~~------------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~ 156 (561)
.+|+++|.+|+|||||+|+|..... .+.+ ..|+|.+.... .+.+.++.++||||......
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 4799999999999999999964321 1111 24555554332 23456799999999964321
Q ss_pred cccccccccccccccCCEEEEEeccc
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.....++.+|++++|+|+.
T Consensus 91 -------~~~~~l~~~D~~ilVvda~ 109 (689)
T TIGR00484 91 -------EVERSLRVLDGAVAVLDAV 109 (689)
T ss_pred -------HHHHHHHHhCEEEEEEeCC
Confidence 2345578899999999986
No 423
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.62 E-value=2.1e-08 Score=90.73 Aligned_cols=152 Identities=22% Similarity=0.179 Sum_probs=79.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.++|.+|+|||+|++.+....+.....+.++ .+.... +...+ .++.+|||||..+ ...+.....+.....+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTT--RNYVTTVIEEDGKTYKFNLLDTAGQED-YRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCce--eeeeEEEEEECCEEEEEEEEECCCccc-chHHHHHHHhhhhEEE
Confidence 4789999999999999999998864333332211 111111 22223 4678899999433 3333333222111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ |....+.++... .......+..... ...|+++|+||+|. ..
T Consensus 79 ~~~---------------------d~~~~v~~~~~~-----------~~~~~~~~~~~~~-~~~p~ivv~nK~D~--~~- 122 (161)
T TIGR00231 79 RVF---------------------DIVILVLDVEEI-----------LEKQTKEIIHHAE-SNVPIILVGNKIDL--RD- 122 (161)
T ss_pred EEE---------------------EEeeeehhhhhH-----------hHHHHHHHHHhcc-cCCcEEEEEEcccC--Cc-
Confidence 111 221111111000 0011122222222 27899999999954 32
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCC
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~ 437 (561)
..........+... ...+++++||+.+.|+.++.
T Consensus 123 -~~~~~~~~~~~~~~-~~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 123 -AKLKTHVAFLFAKL-NGEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred -chhhHHHHHHHhhc-cCCceEEeecCCCCCHHHHH
Confidence 11233333333332 25679999999999987763
No 424
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.62 E-value=4.8e-09 Score=96.31 Aligned_cols=58 Identities=33% Similarity=0.387 Sum_probs=37.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccch-hhhhHhhhcccHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDI-EIINEELRLKDVEHIE 303 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~-~~~~~el~l~Dt~Gi~ 303 (561)
..+|.+.|.+|+|||+|+|.+.+..+. .+...+.++ ...... ...+..+.+|||||+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 62 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKIS--IVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIH 62 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceE--eccCCCCceeceEEEEEEcCCeEEEEEECCCCC
Confidence 357999999999999999999987432 122222222 222221 1223468899999964
No 425
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.62 E-value=1.4e-07 Score=90.93 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=51.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc-------ccCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN-------KVPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~-------~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
+||+++|-++||||||++++++.... ..+..|++....... .....+.+|||+|...... +. -.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~----l~---~~ 73 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS----TR---AV 73 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH----HH---HH
Confidence 47999999999999999999987622 222223222111100 0123589999999853321 11 23
Q ss_pred ccccCCEEEEEecccc
Q psy17315 168 HISACDAIFHLCKEKL 183 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~ 183 (561)
.++.+|++++|+|.+.
T Consensus 74 ~yr~ad~iIlVyDvtn 89 (202)
T cd04102 74 FYNQVNGIILVHDLTN 89 (202)
T ss_pred HhCcCCEEEEEEECcC
Confidence 4688999999998763
No 426
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.62 E-value=3.7e-08 Score=91.06 Aligned_cols=56 Identities=30% Similarity=0.508 Sum_probs=40.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
...++++|.+|+|||||+|.|.+. ....++.++|+|.....+. .+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~--~~~~~~~~~g~T~~~~~~~-~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK--KVCKVAPIPGETKVWQYIT-LMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC--CceeeCCCCCeeEeEEEEE-cCCCEEEEECcCC
Confidence 456889999999999999999987 4455666677763322222 2245789999995
No 427
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.62 E-value=4e-08 Score=91.78 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=39.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
...++.+.|.+|+|||+|++.+.+..+. .+.++.|.. ...+...+..+.+|||+|..+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~--~~~~t~g~~--~~~i~~~~~~~~~~D~~G~~~ 70 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS--HITPTQGFN--IKTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc--ccCCCCCcc--eEEEEECCEEEEEEECCCCHH
Confidence 4578999999999999999999987432 222222321 112233345788999999543
No 428
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.61 E-value=2e-08 Score=93.75 Aligned_cols=53 Identities=28% Similarity=0.491 Sum_probs=35.5
Q ss_pred EEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhh-hHhhhcccHHHHH
Q psy17315 249 IVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEII-NEELRLKDVEHIE 303 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~-~~el~l~Dt~Gi~ 303 (561)
+.|.+|+|||+|++.+++..+..+.++. .|.+|... +... +..+.+|||||+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPF--TTLEPNLGVVEVPDGARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCc--eeecCcceEEEcCCCCeEEEEeccccc
Confidence 4699999999999999998542333322 12344332 2334 5678999999974
No 429
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.61 E-value=1.8e-08 Score=96.43 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=35.0
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhc-----CCCCeEEeechhhhhhhCCCCH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN-----DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~-----~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
..+|+++|+||+|..... .....+++.+++... ..+.+++++||++|.|+.++..
T Consensus 116 ~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 116 LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 478999999999642111 112344444443211 1156899999999999988743
No 430
>KOG0097|consensus
Probab=98.61 E-value=1.4e-07 Score=82.36 Aligned_cols=150 Identities=17% Similarity=0.261 Sum_probs=102.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccC----CccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE----GEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~----gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
.+..+.|.-|+|||-|+..++++.|-. .-|++- ||- +..+......+.+|||+| +++++.+.+.+.+++...
T Consensus 12 fkyiiigdmgvgkscllhqftekkfma-dcphtigvefgtr--iievsgqkiklqiwdtag-qerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTR--IIEVSGQKIKLQIWDTAG-QERFRAVTRSYYRGAAGA 87 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhh-cCCcccceeccee--EEEecCcEEEEEEeeccc-HHHHHHHHHHHhccccce
Confidence 467899999999999999999987543 233322 221 112222234688999999 677888999988887655
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+-.+ +|++.....++-.|+.++ +. ++ ....-++++.||.| +-.
T Consensus 88 lmvy----------------ditrrstynhlsswl~da--r~-----lt------------npnt~i~lignkad--le~ 130 (215)
T KOG0097|consen 88 LMVY----------------DITRRSTYNHLSSWLTDA--RN-----LT------------NPNTVIFLIGNKAD--LES 130 (215)
T ss_pred eEEE----------------EehhhhhhhhHHHHHhhh--hc-----cC------------CCceEEEEecchhh--hhh
Confidence 4444 456667777777777661 11 00 02345678999995 444
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCC
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~ 437 (561)
+.+...++.+++.++. +..++..||++|.++++..
T Consensus 131 qrdv~yeeak~faeen--gl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 131 QRDVTYEEAKEFAEEN--GLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred cccCcHHHHHHHHhhc--CeEEEEecccccCcHHHHH
Confidence 4566677888887775 7788999999999987653
No 431
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.60 E-value=2.1e-08 Score=90.62 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=73.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+|||+|++.+.+..+. .. .|. .+.+.. .+|||||..-......+... ..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~---~t~----~~~~~~---~~iDt~G~~~~~~~~~~~~~-------~~-- 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YK---KTQ----AVEYND---GAIDTPGEYVENRRLYSALI-------VT-- 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---cc---cce----eEEEcC---eeecCchhhhhhHHHHHHHH-------HH--
Confidence 5899999999999999999987532 11 111 111111 58999996321111111100 00
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
+.++|++..|.+.... . . .+. ..++. . ..+|+++|+||+|. .+ ....
T Consensus 60 ----------------~~~ad~vilv~d~~~~--~---s--~~~---~~~~~-~---~~~p~ilv~NK~Dl--~~-~~~~ 106 (142)
T TIGR02528 60 ----------------AADADVIALVQSATDP--E---S--RFP---PGFAS-I---FVKPVIGLVTKIDL--AE-ADVD 106 (142)
T ss_pred ----------------hhcCCEEEEEecCCCC--C---c--CCC---hhHHH-h---ccCCeEEEEEeecc--CC-cccC
Confidence 1222444433332211 0 0 011 12222 1 24699999999954 22 2233
Q ss_pred HHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 406 LPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 406 ~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+.+.++++... ..+++++||++|.|++++.+
T Consensus 107 ~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 107 IERAKELLETAG-AEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred HHHHHHHHHHcC-CCcEEEEecCCCCCHHHHHH
Confidence 445555555431 34789999999999877643
No 432
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.60 E-value=4.1e-08 Score=89.11 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=70.8
Q ss_pred cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHH
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKML 237 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l 237 (561)
..++.++.++|++++|+|++... . ..-..+.+.+... ..+ +.||+|+....... .....++..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~--------~---~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~-~~~~~~~~~ 70 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPL--------L---FRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRK-AWAEYFKKE 70 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCc--------c---cCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHH-HHHHHHHhc
Confidence 34677889999999999875321 0 0111233333332 223 89999986321100 000111111
Q ss_pred h-hh-----cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 238 L-GR-----VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 238 ~-~~-----~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
. .. ......+.+.|.+|+|||+|+|.+.+... ..++..+|++.....+.. ...+.+|||||+
T Consensus 71 ~~~ii~iSa~~~~~~~~~~G~~~vGKstlin~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~i~DtpG~ 138 (141)
T cd01857 71 GIVVVFFSALKENATIGLVGYPNVGKSSLINALVGKKK--VSVSATPGKTKHFQTIFL-TPTITLCDCPGL 138 (141)
T ss_pred CCeEEEEEecCCCcEEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCCcccceEEEEe-CCCEEEEECCCc
Confidence 0 00 12233789999999999999999998743 244445565422222222 236789999996
No 433
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.59 E-value=7.9e-08 Score=91.46 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=80.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|.+|+|||+|++.+....+.....+.+ .+.. ..+... ...+.+|||+|.+. +........+....++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~~~~~~~~~a~~~l 77 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTV---FENYVTDCRVDGKPVQLALWDTAGQEE-YERLRPLSYSKAHVIL 77 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc---cceEEEEEEECCEEEEEEEEECCCChh-ccccchhhcCCCCEEE
Confidence 368999999999999999998665533222111 1111 111111 23577999999543 2221111111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHH-HHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKA-FVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~-~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
..+ .+...+.+..+.. |+. .+.... ...|+++|+||+|.....
T Consensus 78 lv~----------------~i~~~~s~~~~~~~~~~------------------~i~~~~--~~~piilvgnK~Dl~~~~ 121 (187)
T cd04129 78 IGF----------------AVDTPDSLENVRTKWIE------------------EVRRYC--PNVPVILVGLKKDLRQDA 121 (187)
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHHhC--CCCCEEEEeeChhhhhCc
Confidence 111 2222233333221 211 122111 368999999999642100
Q ss_pred h--------ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 401 K--------KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 401 ~--------~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
. .....++...+++.. ...+++.+||++|.|++++.+...+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 122 VAKEEYRTQRFVPIQQGKRVAKEI-GAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred ccccccccCCcCCHHHHHHHHHHh-CCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 0 011123333444433 12478999999999998886655443
No 434
>KOG0073|consensus
Probab=98.58 E-value=1.2e-07 Score=85.33 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=89.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|..|+||+++++.+.+.. .+.++++-|. .+..+...+.++.+||..| ++.++.+++.|.++....+-
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~--~~~i~pt~gf--~Iktl~~~~~~L~iwDvGG-q~~lr~~W~nYfestdglIw- 89 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED--TDTISPTLGF--QIKTLEYKGYTLNIWDVGG-QKTLRSYWKNYFESTDGLIW- 89 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC--ccccCCccce--eeEEEEecceEEEEEEcCC-cchhHHHHHHhhhccCeEEE-
Confidence 5689999999999999999998873 3333332222 1123344567899999999 67788888888765544322
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
.+.++| .-.+..+... -.+.|.. ..+.+.|+++++||.|....-+.+
T Consensus 90 ---vvDssD------------~~r~~e~~~~-----------------L~~lL~e-erlaG~~~Lvlank~dl~~~l~~~ 136 (185)
T KOG0073|consen 90 ---VVDSSD------------RMRMQECKQE-----------------LTELLVE-ERLAGAPLLVLANKQDLPGALSLE 136 (185)
T ss_pred ---EEECch------------HHHHHHHHHH-----------------HHHHHhh-hhhcCCceEEEEecCcCccccCHH
Confidence 222222 0111111111 1122332 233689999999999653111111
Q ss_pred ch--HHHHHHHHHhcCCCCeEEeechhhhhhhCC
Q psy17315 404 KW--LPKIKEWVDANDPGATIIPFSGVFEHQLVD 435 (561)
Q Consensus 404 ~~--~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~ 435 (561)
.. .-.+++++... ..+++-+||.+|+++.+
T Consensus 137 ~i~~~~~L~~l~ks~--~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 137 EISKALDLEELAKSH--HWRLVKCSAVTGEDLLE 168 (185)
T ss_pred HHHHhhCHHHhcccc--CceEEEEeccccccHHH
Confidence 11 12334444433 67899999999988654
No 435
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.58 E-value=1.1e-08 Score=94.75 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=37.2
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.+|+++++||+|. .. ...+.+.+++.......|++++||++|.|+.+|.+...+
T Consensus 91 ~~~ii~v~nK~Dl--~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 91 SKRQIAVISKTDM--PD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLAS 144 (158)
T ss_pred CCCeEEEEEcccc--Cc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHH
Confidence 6899999999954 22 123445555544422358999999999999988665443
No 436
>KOG0074|consensus
Probab=98.57 E-value=1.6e-07 Score=82.37 Aligned_cols=164 Identities=16% Similarity=0.105 Sum_probs=95.5
Q ss_pred hhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 89 ~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
...+.++.++++++|.-|+||||++..|.+.+ ....+.-|....... ....-.+.++|..|.. ++..-+-+
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~-~~g~f~LnvwDiGGqr-------~IRpyWsN 81 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVE-YDGTFHLNVWDIGGQR-------GIRPYWSN 81 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEe-ecCcEEEEEEecCCcc-------ccchhhhh
Confidence 34455677999999999999999999999887 333333333222111 1122468899999874 33344566
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHH-HHHhcch-hhccccccCcCCCCC-ccHHHHHHHhhhcCCC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETR-IRDLRRS-VDAKADSKKKMGPKK-TDEGEKKMLLGRVGTN 244 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~-v~NK~D~~~~~~~~~-~~~~~l~~l~~~~~~~ 244 (561)
+..+.|.+++|+|+++..... ....+-.++++++ +.+.-.. ..||.|+.-.+..+. +....+..+ ..+.+
T Consensus 82 Yyenvd~lIyVIDS~D~krfe-----E~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~l--rdRsw 154 (185)
T KOG0074|consen 82 YYENVDGLIYVIDSTDEKRFE-----EISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGL--RDRSW 154 (185)
T ss_pred hhhccceEEEEEeCCchHhHH-----HHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhh--hhceE
Confidence 778999999999977533221 0001111111111 1111111 678888874332221 000111111 23466
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..-.+|+.+++|.+.-.++++..
T Consensus 155 hIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 155 HIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred EeeeCccccccCccCcchhhhcC
Confidence 77889999999988888887654
No 437
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.57 E-value=2.9e-08 Score=95.43 Aligned_cols=162 Identities=15% Similarity=0.216 Sum_probs=84.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCC--ccccccchhhh-hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEG--EVNPVRDIEII-NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~g--t~dp~~~~~~~-~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|+|.|++..+.......+.. ++.....+... ...+.+|||||+.+......
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~----------- 70 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPD----------- 70 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHH-----------
Confidence 46899999999999999999986433222111111 11111111111 23688999999743111100
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
+++..+ .+..+|+++.+ .+ ..++..+...+..+.. ..+|+++|+||+|.+....
T Consensus 71 -~~l~~~------------~~~~~d~~l~v----~~--------~~~~~~d~~~~~~l~~-~~~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 71 -DYLEEM------------KFSEYDFFIII----SS--------TRFSSNDVKLAKAIQC-MGKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred -HHHHHh------------CccCcCEEEEE----eC--------CCCCHHHHHHHHHHHH-hCCCEEEEEecccchhhhh
Confidence 111000 00111222211 11 2345566666665544 4789999999997643211
Q ss_pred ---------ccchHHHHHHHHHhc-----CCCCeEEeechh--hhhhhCCCCHHHHHH
Q psy17315 402 ---------KNKWLPKIKEWVDAN-----DPGATIIPFSGV--FEHQLVDMPDDERQR 443 (561)
Q Consensus 402 ---------~~~~~~~l~~~~~~~-----~~~~~vi~iSA~--~~~gl~~L~~~~~~~ 443 (561)
.+..++.+++.+... .+..+++++|+. .+.++..|.+.....
T Consensus 125 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~ 182 (197)
T cd04104 125 QRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKD 182 (197)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHH
Confidence 123444554433321 124679999998 567777765544433
No 438
>KOG0410|consensus
Probab=98.56 E-value=3.1e-09 Score=105.45 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=94.8
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhh-hHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEII-NEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~-~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
.+.++|+++|+||+||++|+++|+.......+--| .|.||... .... +..+.+.||.|+ ++.++....+.+..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLF--ATLDpT~h~a~Lpsg~~vlltDTvGF---isdLP~~LvaAF~A 250 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLF--ATLDPTLHSAHLPSGNFVLLTDTVGF---ISDLPIQLVAAFQA 250 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhh--eeccchhhhccCCCCcEEEEeechhh---hhhCcHHHHHHHHH
Confidence 56789999999999999999999977554444444 67788754 3333 467889999999 67777666654444
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCc----eEEEecCCh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT----QIYLVNLSA 395 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP----~iiv~NK~D 395 (561)
++++. .++|+++|++|. +++......+..+..|+.+.. +..| |+-|-||+|
T Consensus 251 TLeeV------------------aeadlllHvvDi------ShP~ae~q~e~Vl~vL~~igv-~~~pkl~~mieVdnkiD 305 (410)
T KOG0410|consen 251 TLEEV------------------AEADLLLHVVDI------SHPNAEEQRETVLHVLNQIGV-PSEPKLQNMIEVDNKID 305 (410)
T ss_pred HHHHH------------------hhcceEEEEeec------CCccHHHHHHHHHHHHHhcCC-CcHHHHhHHHhhccccc
Confidence 43332 455777777663 332211111222344444432 2333 344666763
Q ss_pred hhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 396 KDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 396 ~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..+ . +.+.. ++ ..+++||++|.|+.++..++
T Consensus 306 --~e~---~-------~~e~E-~n-~~v~isaltgdgl~el~~a~ 336 (410)
T KOG0410|consen 306 --YEE---D-------EVEEE-KN-LDVGISALTGDGLEELLKAE 336 (410)
T ss_pred --ccc---c-------cCccc-cC-CccccccccCccHHHHHHHH
Confidence 211 1 11111 12 27899999999998885544
No 439
>PRK12739 elongation factor G; Reviewed
Probab=98.56 E-value=7.9e-08 Score=109.49 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=56.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC------Cccc------------CCCcccccCccc--cccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS------AAAE------------NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~------~~~~------------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~ 156 (561)
.+|+++|.+|+|||||+|+|.... ..+. ...|+|.+.... .+.+.++.++||||.....
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~- 87 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT- 87 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH-
Confidence 579999999999999999996431 1122 145666654332 2345679999999986422
Q ss_pred cccccccccccccccCCEEEEEeccc
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
......++.+|++++|+|+.
T Consensus 88 ------~e~~~al~~~D~~ilVvDa~ 107 (691)
T PRK12739 88 ------IEVERSLRVLDGAVAVFDAV 107 (691)
T ss_pred ------HHHHHHHHHhCeEEEEEeCC
Confidence 23566778899999999976
No 440
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.56 E-value=5.4e-08 Score=83.80 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=91.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCCEEE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIF 176 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il 176 (561)
.++++||..++|||||+|+|.|...... .|.. .+ ...=..+||||..-..+ .+-.+++....++|+|+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQA-ve----~~d~~~IDTPGEy~~~~---~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQA-VE----FNDKGDIDTPGEYFEHP---RWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc----ccce-ee----ccCccccCCchhhhhhh---HHHHHHHHHhhccceee
Confidence 3699999999999999999998762211 1111 11 11123689999864332 22234455668899999
Q ss_pred EEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEcc
Q psy17315 177 HLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGV 252 (561)
Q Consensus 177 ~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~ 252 (561)
+|-.+.+... .+.-.+..+..+ +..|+|+.+ ..+....+..+.+.+..+.+.+|+.
T Consensus 70 ~v~~and~~s---------------~f~p~f~~~~~k~vIgvVTK~DLae-----d~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 70 YVHAANDPES---------------RFPPGFLDIGVKKVIGVVTKADLAE-----DADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred eeecccCccc---------------cCCcccccccccceEEEEecccccc-----hHhHHHHHHHHHHcCCcceEEEecc
Confidence 9985543221 111112222222 788999873 3345556777777888899999999
Q ss_pred CCCCHHHHHHHHHhh
Q psy17315 253 PNVGKSTFFNVLTKR 267 (561)
Q Consensus 253 ~~~Gks~l~~~l~~~ 267 (561)
.+.|++.|+..|...
T Consensus 130 d~~gv~~l~~~L~~~ 144 (148)
T COG4917 130 DNQGVEELVDYLASL 144 (148)
T ss_pred CcccHHHHHHHHHhh
Confidence 999999999998654
No 441
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.55 E-value=1.4e-07 Score=88.60 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=49.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-C--cccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccc---cc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-A--AAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH---IS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~--~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~---i~ 170 (561)
..|.++|.+|+|||+||..|+... . .+|-.|..+... .......+.++|+||..+-+ ..++.. +.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~--~~~~~~~~~lvD~PGH~rlr-------~~~~~~~~~~~ 74 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNV--NNSKGKKLRLVDIPGHPRLR-------SKLLDELKYLS 74 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCG--SSTCGTCECEEEETT-HCCC-------HHHHHHHHHHG
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEe--ecCCCCEEEEEECCCcHHHH-------HHHHHhhhchh
Confidence 469999999999999999999765 1 122222222111 01234569999999985433 334443 78
Q ss_pred cCCEEEEEeccc
Q psy17315 171 ACDAIFHLCKEK 182 (561)
Q Consensus 171 ~~D~il~VvD~~ 182 (561)
.+..|++|+|++
T Consensus 75 ~~k~IIfvvDSs 86 (181)
T PF09439_consen 75 NAKGIIFVVDSS 86 (181)
T ss_dssp GEEEEEEEEETT
T ss_pred hCCEEEEEEeCc
Confidence 899999999986
No 442
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.55 E-value=1.6e-07 Score=92.56 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+++++||..|+||||++++|+|..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 3579999999999999999999875
No 443
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.55 E-value=1e-07 Score=95.58 Aligned_cols=105 Identities=16% Similarity=0.074 Sum_probs=67.6
Q ss_pred CCCCc----cCCCChHHHH--HHHHHHHhcCCCc--cccccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHH
Q psy17315 42 DKPTW----GDGDGPKAPK--RRKQHLSDKLRPK--ADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFF 113 (561)
Q Consensus 42 ~k~~l----~DL~~~~~~~--~w~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStli 113 (561)
-.|.+ +||++.+... .+...++.-+..+ +++....+..... ... .+...+++|.+|||||||+
T Consensus 111 i~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~--------~~l-~~~~svl~GqSGVGKSSLi 181 (301)
T COG1162 111 IEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELA--------ELL-AGKITVLLGQSGVGKSTLI 181 (301)
T ss_pred CcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHH--------HHh-cCCeEEEECCCCCcHHHHH
Confidence 35665 9999877666 5777777778777 5555543332211 111 1236789999999999999
Q ss_pred HHHhcCC-C---cccCCCcccccCccc---cccCCeEEEEeCCCcccCC
Q psy17315 114 NVLTKSS-A---AAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 114 n~L~~~~-~---~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~ 155 (561)
|+|.+.. . .++..-+-.+++++. ...+.+-.++||||+.+..
T Consensus 182 N~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~ 230 (301)
T COG1162 182 NALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLG 230 (301)
T ss_pred HhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccC
Confidence 9999754 3 344444444444333 2345678999999996543
No 444
>PRK00007 elongation factor G; Reviewed
Probab=98.54 E-value=1.4e-07 Score=107.47 Aligned_cols=135 Identities=13% Similarity=0.044 Sum_probs=79.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc---CC---Cccc------------CCCcccccCccc--cccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK---SS---AAAE------------NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~---~~---~~~~------------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~ 156 (561)
.+|+++|.+|+|||||+|+|.. .. ..+. ...|+|++.... .+.+..+.|+||||.....
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~- 89 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT- 89 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH-
Confidence 4799999999999999999963 21 1122 245666665332 2345689999999975322
Q ss_pred cccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHH
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGE 233 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~ 233 (561)
......++.+|++++|+|+...- ... -..+-..+.....+ ++||+|..+.. ....
T Consensus 90 ------~ev~~al~~~D~~vlVvda~~g~-------~~q----t~~~~~~~~~~~~p~iv~vNK~D~~~~~-----~~~~ 147 (693)
T PRK00007 90 ------IEVERSLRVLDGAVAVFDAVGGV-------EPQ----SETVWRQADKYKVPRIAFVNKMDRTGAD-----FYRV 147 (693)
T ss_pred ------HHHHHHHHHcCEEEEEEECCCCc-------chh----hHHHHHHHHHcCCCEEEEEECCCCCCCC-----HHHH
Confidence 12455678889999999875210 000 01111223333333 89999998422 2233
Q ss_pred HHHHhhhcCC---CcEEEEEccCC
Q psy17315 234 KKMLLGRVGT---NLKVGIVGVPN 254 (561)
Q Consensus 234 l~~l~~~~~~---~~~i~isg~~~ 254 (561)
+..+...+.. ...+++|+..+
T Consensus 148 ~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 148 VEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHHHhCCCeeeEEecCccCCc
Confidence 4444444433 33456665554
No 445
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.53 E-value=6.5e-08 Score=92.82 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=78.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCccc----c---------cCCcc-ccc-cchhhhhHhhhcccHHHHHHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVT----H---------VEGEV-NPV-RDIEIINEELRLKDVEHIEKEINKI 309 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~----~---------~~gt~-dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l 309 (561)
..+++.|..++|||+|.+.|+.......... . ..|.+ +.. ..++..+.++.++||||........
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 4689999999999999999987521111100 0 11222 221 1233344578999999975432222
Q ss_pred HHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCc-eE
Q psy17315 310 EKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT-QI 388 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP-~i 388 (561)
.... ..+|.+..|++... .....+.+.+..... .++| +|
T Consensus 83 ~~~~-----------------------------~~~D~~ilVvda~~----------g~~~~~~~~~~~~~~-~~~~~iI 122 (195)
T cd01884 83 ITGA-----------------------------AQMDGAILVVSATD----------GPMPQTREHLLLARQ-VGVPYIV 122 (195)
T ss_pred HHHh-----------------------------hhCCEEEEEEECCC----------CCcHHHHHHHHHHHH-cCCCcEE
Confidence 1111 01122222222111 122333444443333 4676 77
Q ss_pred EEecCChhhhhhhc---cchHHHHHHHHHhcC---CCCeEEeechhhhhhhCC
Q psy17315 389 YLVNLSAKDYIKKK---NKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVD 435 (561)
Q Consensus 389 iv~NK~D~d~~~~~---~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~ 435 (561)
+|+||+|. .... +...+++++.+.... .+.+++|+||++|.++.+
T Consensus 123 vviNK~D~--~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 123 VFLNKADM--VDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred EEEeCCCC--CCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC
Confidence 89999964 2211 112234555554321 247899999999998654
No 446
>KOG0095|consensus
Probab=98.52 E-value=9.8e-08 Score=84.28 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=93.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
-.+|.++|.-|+||+-|...+++..|.......+. +|-. ..++..+ ..+.+|||+| +++++.+.+.+++++..+
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatig--vdfmiktvev~gekiklqiwdtag-qerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIG--VDFMIKTVEVNGEKIKLQIWDTAG-QERFRSITQSYYRSAHAL 83 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceee--eeEEEEEEEECCeEEEEEEeeccc-hHHHHHHHHHHhhhcceE
Confidence 36799999999999999999999877554433221 1111 1122222 3588999999 677999999988877655
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ +|.......-+-+|+.+ +..+.- ...--|+|.||+|.+.
T Consensus 84 ilvy----------------discqpsfdclpewlre------------------ie~yan-~kvlkilvgnk~d~~d-- 126 (213)
T KOG0095|consen 84 ILVY----------------DISCQPSFDCLPEWLRE------------------IEQYAN-NKVLKILVGNKIDLAD-- 126 (213)
T ss_pred EEEE----------------ecccCcchhhhHHHHHH------------------HHHHhh-cceEEEeeccccchhh--
Confidence 4444 12211222222233322 333321 1233578999996532
Q ss_pred hccchHHHHH-HHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIK-EWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~-~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
..+.-+++- ++.+.. +.-++.+||+...+++.|..+.+.+..
T Consensus 127 -rrevp~qigeefs~~q--dmyfletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 127 -RREVPQQIGEEFSEAQ--DMYFLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred -hhhhhHHHHHHHHHhh--hhhhhhhcccchhhHHHHHHHHHHHHH
Confidence 222222232 222222 344788999999998888666555443
No 447
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.51 E-value=6e-07 Score=98.58 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=51.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCc------ccccCcc---------------ccccCCeEEEEeCCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPF------CTIDPNE---------------NNKVPAFLNVVDIAGL 151 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~------~T~~~~~---------------~~~~~~~i~l~DtpG~ 151 (561)
..+|+|+|.+|+|||||+++|+... ...+...+ ++.+... ..+.+..+.++||||.
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 3579999999999999999996322 11111111 1111100 0123457999999998
Q ss_pred ccCCccccccccccccccccCCEEEEEecccc
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
.... ......++.+|++++|+|++.
T Consensus 90 ~df~-------~~~~~~l~~aD~aIlVvDa~~ 114 (526)
T PRK00741 90 EDFS-------EDTYRTLTAVDSALMVIDAAK 114 (526)
T ss_pred hhhH-------HHHHHHHHHCCEEEEEEecCC
Confidence 5332 123455688999999999863
No 448
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.51 E-value=1e-07 Score=103.95 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=56.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCC-CcccccCccc--cccCCeEEEEeCCCcccCCccc---ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENF-PFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEG---QGLGNAFLS 167 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~-~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~---~~~~~~~l~ 167 (561)
..++|+++|.|||||||++|+|+|.. ..++.. +++|.. ... ...+..+.+|||||+....... ..+......
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 44689999999999999999999987 556655 555543 221 2335679999999998653211 112122222
Q ss_pred ccc--cCCEEEEEec
Q psy17315 168 HIS--ACDAIFHLCK 180 (561)
Q Consensus 168 ~i~--~~D~il~VvD 180 (561)
.+. .+|++|+|..
T Consensus 196 ~Lsk~gpDVVLlV~R 210 (763)
T TIGR00993 196 FIKKNPPDIVLYVDR 210 (763)
T ss_pred HHhcCCCCEEEEEEe
Confidence 222 4799998873
No 449
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.50 E-value=1e-07 Score=92.72 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=51.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-Cccc-CCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccc----cc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAE-NFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFL----SH 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~-~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l----~~ 168 (561)
++|.++|.+|+||||++|+|+|.. ...+ ....+|...... ...+..+.++||||+.........+...+. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 379999999999999999999988 3333 234455554332 234568999999999754432222222222 12
Q ss_pred cccCCEEEEEecc
Q psy17315 169 ISACDAIFHLCKE 181 (561)
Q Consensus 169 i~~~D~il~VvD~ 181 (561)
....+++++|+..
T Consensus 81 ~~g~ha~llVi~~ 93 (212)
T PF04548_consen 81 SPGPHAFLLVIPL 93 (212)
T ss_dssp TT-ESEEEEEEET
T ss_pred cCCCeEEEEEEec
Confidence 3557999999954
No 450
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.49 E-value=7.3e-08 Score=93.12 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=34.6
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhc-CCCCeEEeechhhhhhhCCCCHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN-DPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~-~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.+|+++|+||+|...........+.+++++... ..+.+++++||++|.|+++|.+.
T Consensus 137 ~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~ 193 (203)
T cd01888 137 LKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEY 193 (203)
T ss_pred CCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHH
Confidence 358999999995421111122234455544321 12567999999999998887543
No 451
>KOG0093|consensus
Probab=98.49 E-value=1.5e-07 Score=83.07 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=108.6
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc--cccccchhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE--VNPVRDIEI-INEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt--~dp~~~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
+...++.+.|...+||++++...+...|..+-++.+.-. +..+ +.. ....+++|||+|. ++++.+.-.+++++.
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTv--yr~~kRiklQiwDTagq-EryrtiTTayyRgam 95 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV--YRSDKRIKLQIWDTAGQ-ERYRTITTAYYRGAM 95 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEe--eecccEEEEEEEecccc-hhhhHHHHHHhhccc
Confidence 334589999999999999999999998888777664311 1111 000 1245889999995 558888878877776
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
..+..+ .+++.+.+..+.+|... +++ +. ..+.|+|+|+||+|.|.
T Consensus 96 gfiLmy----------------DitNeeSf~svqdw~tq--Ikt----------------ys-w~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 96 GFILMY----------------DITNEESFNSVQDWITQ--IKT----------------YS-WDNAQVILVGNKCDMDS 140 (193)
T ss_pred eEEEEE----------------ecCCHHHHHHHHHHHHH--hee----------------ee-ccCceEEEEecccCCcc
Confidence 655555 66777888878887665 222 11 14789999999996543
Q ss_pred hhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 399 IKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
......++.+.+..+. +..++..|||.+.++.++.++..
T Consensus 141 --eRvis~e~g~~l~~~L--GfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 141 --ERVISHERGRQLADQL--GFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred --ceeeeHHHHHHHHHHh--ChHHhhhcccccccHHHHHHHHH
Confidence 2333445555555555 66789999999999877755543
No 452
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.47 E-value=3.4e-08 Score=96.68 Aligned_cols=149 Identities=16% Similarity=0.239 Sum_probs=81.9
Q ss_pred CCCCCcEEEEEEcCCCCHHHHHHHHhcC------C---CcccCC-Cccc--------------ccCccc-----------
Q psy17315 92 RVGTNLKVGIVGVPNVGKSTFFNVLTKS------S---AAAENF-PFCT--------------IDPNEN----------- 136 (561)
Q Consensus 92 ~~~~~~~v~ivG~pnvGKStlin~L~~~------~---~~~~~~-~~~T--------------~~~~~~----------- 136 (561)
...+...|||.|.||+|||||+++|... + ..+.|. |++. .++...
T Consensus 25 ~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lG 104 (266)
T PF03308_consen 25 HTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLG 104 (266)
T ss_dssp GTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHH
T ss_pred hcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCC
Confidence 3445689999999999999999999632 2 111111 1110 011000
Q ss_pred -------------cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHH
Q psy17315 137 -------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLL 203 (561)
Q Consensus 137 -------------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l 203 (561)
...+..+.|+-|.|+- ++ -..-..-||.+++|+-+. .-..++.+
T Consensus 105 Gls~~t~~~v~ll~aaG~D~IiiETVGvG--Qs--------E~~I~~~aD~~v~v~~Pg-------------~GD~iQ~~ 161 (266)
T PF03308_consen 105 GLSRATRDAVRLLDAAGFDVIIIETVGVG--QS--------EVDIADMADTVVLVLVPG-------------LGDEIQAI 161 (266)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEEEESSS--TH--------HHHHHTTSSEEEEEEESS-------------TCCCCCTB
T ss_pred CccHhHHHHHHHHHHcCCCEEEEeCCCCC--cc--------HHHHHHhcCeEEEEecCC-------------CccHHHHH
Confidence 1124467888888873 22 123346679998888332 22334444
Q ss_pred HHHHHHhcch-hhccccccCcCCCCCccHHHHHHHhhhc------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 204 ETRIRDLRRS-VDAKADSKKKMGPKKTDEGEKKMLLGRV------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 204 ~~~l~~~~~~-v~NK~D~~~~~~~~~~~~~~l~~l~~~~------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+..+.++... |.||+|...... ...+++..+... +..+++.+|+.+|.|++.|..+|.+.
T Consensus 162 KaGimEiaDi~vVNKaD~~gA~~----~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 162 KAGIMEIADIFVVNKADRPGADR----TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp -TTHHHH-SEEEEE--SHHHHHH----HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred hhhhhhhccEEEEeCCChHHHHH----HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 5556666555 899999663211 111233332221 23578999999999999999999775
No 453
>KOG0081|consensus
Probab=98.46 E-value=1e-07 Score=85.06 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=100.0
Q ss_pred EEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hh---------hhHhhhcccHHHHHHHHHHHHHHHhhC
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EI---------INEELRLKDVEHIEKEINKIEKLVQRG 316 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~---------~~~el~l~Dt~Gi~~~~~~l~~~~~~~ 316 (561)
+...|..|+||++++-..+...|...-++.+.=...+.+-+ .. ....+.+|||+| ++++..+.....+.
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG-QERFRSLTTAFfRD 90 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG-QERFRSLTTAFFRD 90 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc-HHHHHHHHHHHHHh
Confidence 34468899999999999988887776666543222222211 00 112478999999 56676666544332
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChh
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~ 396 (561)
+- ||..--+++.....+.+.+|+.+ |+......+.-+|++.||+|.
T Consensus 91 AM----------------GFlLiFDlT~eqSFLnvrnWlSQ------------------L~~hAYcE~PDivlcGNK~DL 136 (219)
T KOG0081|consen 91 AM----------------GFLLIFDLTSEQSFLNVRNWLSQ------------------LQTHAYCENPDIVLCGNKADL 136 (219)
T ss_pred hc----------------cceEEEeccchHHHHHHHHHHHH------------------HHHhhccCCCCEEEEcCccch
Confidence 22 22222255666778888888765 221222235568899999954
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
.+......++..++++.. +.|.+.+||-+|.++++..+-.....+++
T Consensus 137 --~~~R~Vs~~qa~~La~ky--glPYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 137 --EDQRVVSEDQAAALADKY--GLPYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred --hhhhhhhHHHHHHHHHHh--CCCeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 332333344555555554 78999999999999888766555555544
No 454
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.46 E-value=2.4e-07 Score=99.91 Aligned_cols=162 Identities=17% Similarity=0.080 Sum_probs=88.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCc-------------------------------ccCCCcccccCccc--cccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAA-------------------------------AENFPFCTIDPNEN--NKVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~-------------------------------~~~~~~~T~~~~~~--~~~~ 140 (561)
...++|+++|..++|||||+.+|+..... .....|.|.+.... ....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 34578999999999999999999742100 00123445443222 1223
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N 216 (561)
..+.|+||||.... .......+..+|++++|+|+........-.......+.+ ..+..++.+ +.|
T Consensus 85 ~~i~lIDtPGh~~f-------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~----~~~~~~gi~~iiv~vN 153 (446)
T PTZ00141 85 YYFTIIDAPGHRDF-------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA----LLAFTLGVKQMIVCIN 153 (446)
T ss_pred eEEEEEECCChHHH-------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH----HHHHHcCCCeEEEEEE
Confidence 47899999996422 223455578899999999876321000000000111111 123333332 899
Q ss_pred cccccCcCCCCC---ccHHHHHHHhhhcC----CCcEEEEEccCCCCHH------------HHHHHHHh
Q psy17315 217 KADSKKKMGPKK---TDEGEKKMLLGRVG----TNLKVGIVGVPNVGKS------------TFFNVLTK 266 (561)
Q Consensus 217 K~D~~~~~~~~~---~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks------------~l~~~l~~ 266 (561)
|+|......... ....++...+.... ..+.|++||.+|.|+. +|+++|.+
T Consensus 154 KmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~ 222 (446)
T PTZ00141 154 KMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT 222 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC
Confidence 999542110000 11122333333222 3567999999999985 47777654
No 455
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.46 E-value=6.9e-07 Score=96.31 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=90.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCC---cccCCCcccccCc----------------------cc------------
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSA---AAENFPFCTIDPN----------------------EN------------ 136 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~---~~~~~~~~T~~~~----------------------~~------------ 136 (561)
...+.||++|.-..|||||+.+|++... .-.-.-|.|.+.- .+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 3457899999999999999999998541 1111112221110 00
Q ss_pred -cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h-
Q psy17315 137 -NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S- 213 (561)
Q Consensus 137 -~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~- 213 (561)
......+.++||||.. .+....+..+..+|++++|+|+...- ......+.+. .+..+.. +
T Consensus 112 ~~~~~~~i~~IDtPGH~-------~fi~~m~~g~~~~D~alLVVda~~g~------~~~qT~ehl~----i~~~lgi~~i 174 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIAANESC------PQPQTSEHLA----AVEIMKLKHI 174 (460)
T ss_pred cccccceEeeeeCCCHH-------HHHHHHHHHHhhCCEEEEEEECCCCc------cchhhHHHHH----HHHHcCCCcE
Confidence 0012368899999953 22333455667899999999876210 0011111111 1111211 1
Q ss_pred --hhccccccCcCCCCCccHHHHHHHhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 214 --VDAKADSKKKMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 214 --v~NK~D~~~~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.||+|+....... ....++..+... ....+.+++||.+|.|+++|++.|.+..
T Consensus 175 IVvlNKiDlv~~~~~~-~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 175 IILQNKIDLVKEAQAQ-DQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred EEEEecccccCHHHHH-HHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 89999997321110 011122222211 2356789999999999999999998754
No 456
>PLN00023 GTP-binding protein; Provisional
Probab=98.45 E-value=4.7e-07 Score=92.31 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=69.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccccc---------------cCCeEEEEeCCCcccCCcc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNENNK---------------VPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~~~---------------~~~~i~l~DtpG~~~~~~~ 157 (561)
..+||+++|..+||||||++++.+... ...+..|++........ ....+.||||+|......
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs- 98 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD- 98 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh-
Confidence 347999999999999999999997652 22223333221110000 123489999999754332
Q ss_pred ccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---------------ch---hhcccc
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---------------RS---VDAKAD 219 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------------~~---v~NK~D 219 (561)
+. -..++++|++++|+|.+.+ ..++++..+.+.+.... .. |+||+|
T Consensus 99 ---L~---~~yyr~AdgiILVyDITdr----------~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 99 ---CR---SLFYSQINGVIFVHDLSQR----------RTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred ---hh---HHhccCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 11 2336889999999987632 23445554444444321 11 899999
Q ss_pred ccCc
Q psy17315 220 SKKK 223 (561)
Q Consensus 220 ~~~~ 223 (561)
+.+.
T Consensus 163 L~~~ 166 (334)
T PLN00023 163 IAPK 166 (334)
T ss_pred cccc
Confidence 9754
No 457
>KOG0095|consensus
Probab=98.45 E-value=2.7e-07 Score=81.57 Aligned_cols=145 Identities=17% Similarity=0.104 Sum_probs=87.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCccccc--Cccc----cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID--PNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~--~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.||.+||-.|||||-|+..++..-.+++. |.|.. .... ......+++|||+|....++- .-.+.|
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgq--gatigvdfmiktvev~gekiklqiwdtagqerfrsi-------tqsyyr 78 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSI-------TQSYYR 78 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCC--CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHH-------HHHHhh
Confidence 68999999999999999999965543332 22222 1110 112236899999998655431 234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h------hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S------VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
.|+++++|.|.+- ...++-+.++|.++.. . |+||+|+.++.+.......++.+...
T Consensus 79 sahalilvydisc-------------qpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qd-- 143 (213)
T KOG0095|consen 79 SAHALILVYDISC-------------QPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQD-- 143 (213)
T ss_pred hcceEEEEEeccc-------------CcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhh--
Confidence 8999999998651 1223344444444322 2 89999998775543322222322211
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..-...|++...+++.|+-.+.-+
T Consensus 144 --myfletsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 144 --MYFLETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred --hhhhhhcccchhhHHHHHHHHHHH
Confidence 123456777777777777666544
No 458
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.44 E-value=8.2e-08 Score=108.21 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=82.2
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc--chhh----hhHhhhcccHHHHHHHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR--DIEI----INEELRLKDVEHIEKEINKIEKLVQR 315 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~--~~~~----~~~el~l~Dt~Gi~~~~~~l~~~~~~ 315 (561)
...+.|.+.|..++||++|+++|.+..+...... |.+..+. .+.+ .+..+.||||||... +..+...+..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~---GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-F~~mr~rg~~ 317 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAG---GITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-FSSMRSRGAN 317 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCC---ccccccceEEEEEEecCCceEEEEEECCcHHH-HHHHHHHHHH
Confidence 4668899999999999999999988765433221 2211111 1111 235689999999543 3333322211
Q ss_pred CCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCCh
Q psy17315 316 GDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSA 395 (561)
Q Consensus 316 ~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D 395 (561)
.. |+++.|+++.. .......+.+..... ...|+|+|+||+|
T Consensus 318 ~a----------------------------DiaILVVDA~d----------Gv~~QT~E~I~~~k~-~~iPiIVViNKiD 358 (742)
T CHL00189 318 VT----------------------------DIAILIIAADD----------GVKPQTIEAINYIQA-ANVPIIVAINKID 358 (742)
T ss_pred HC----------------------------CEEEEEEECcC----------CCChhhHHHHHHHHh-cCceEEEEEECCC
Confidence 11 22222222100 011122223333322 4789999999996
Q ss_pred hhhhhhccchHHHHHHH---HHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 396 KDYIKKKNKWLPKIKEW---VDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 396 ~d~~~~~~~~~~~l~~~---~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..... .....+.+..+ .+......+++++||++|.|+.+|.+..
T Consensus 359 l~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I 405 (742)
T CHL00189 359 KANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETI 405 (742)
T ss_pred ccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhh
Confidence 42210 01112222221 1111113689999999999998885543
No 459
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.43 E-value=3.6e-08 Score=93.96 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=80.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCccc---------c------cCCcc-ccc-cchh--hhhHhhhcccHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVT---------H------VEGEV-NPV-RDIE--IINEELRLKDVEHIEK 304 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~---------~------~~gt~-dp~-~~~~--~~~~el~l~Dt~Gi~~ 304 (561)
...|.++|..++|||+|++.|....-...... . ..|.+ +.. ..+. ..+..+.++||||-..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 35799999999999999999998752221100 0 00111 100 1122 3345788999999543
Q ss_pred HHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccC
Q psy17315 305 EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTA 384 (561)
Q Consensus 305 ~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~ 384 (561)
......... ..+|...++ +++.. .......+.+..... ..
T Consensus 83 f~~~~~~~~---------------~~~D~ailv--------------Vda~~----------g~~~~~~~~l~~~~~-~~ 122 (188)
T PF00009_consen 83 FIKEMIRGL---------------RQADIAILV--------------VDAND----------GIQPQTEEHLKILRE-LG 122 (188)
T ss_dssp HHHHHHHHH---------------TTSSEEEEE--------------EETTT----------BSTHHHHHHHHHHHH-TT
T ss_pred eeeccccee---------------cccccceee--------------eeccc----------ccccccccccccccc-cc
Confidence 222222111 011111111 11110 122333444443333 57
Q ss_pred CceEEEecCChhhhhhhccchHHHHH-HHHHhcC-C---CCeEEeechhhhhhhCCCCHH
Q psy17315 385 KTQIYLVNLSAKDYIKKKNKWLPKIK-EWVDAND-P---GATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 385 kP~iiv~NK~D~d~~~~~~~~~~~l~-~~~~~~~-~---~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.|+++|+||+|....+ -....+++. .+++... . ..|++++||.+|.|+.+|.+.
T Consensus 123 ~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~ 181 (188)
T PF00009_consen 123 IPIIVVLNKMDLIEKE-LEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEA 181 (188)
T ss_dssp -SEEEEEETCTSSHHH-HHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHH
T ss_pred cceEEeeeeccchhhh-HHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHH
Confidence 8999999999653111 122334444 2222221 1 358999999999999877544
No 460
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.42 E-value=3.1e-07 Score=95.48 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=48.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-----CcccCCCcccccCccccc-cCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-----AAAENFPFCTIDPNENNK-VPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-----~~~~~~~~~T~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
..++.|+|+|-+|+|||||||+|.|-. +...+...+|.++..... ....+.+||.||+..+..... .++.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~----~Yl~ 108 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPE----EYLK 108 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HH----HHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHH----HHHH
Confidence 356899999999999999999998742 111122345555544321 224799999999975443211 2222
Q ss_pred --ccccCCEEEEEeccc
Q psy17315 168 --HISACDAIFHLCKEK 182 (561)
Q Consensus 168 --~i~~~D~il~VvD~~ 182 (561)
.+...|.+++|.+.+
T Consensus 109 ~~~~~~yD~fiii~s~r 125 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSER 125 (376)
T ss_dssp HTTGGG-SEEEEEESSS
T ss_pred HccccccCEEEEEeCCC
Confidence 246789998888543
No 461
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.42 E-value=6.1e-08 Score=110.17 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=83.2
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc--cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV--RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~--~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
....+.|.+.|..++||++|+++|.+..+...... |.+..+ ..+.+.+..+.||||||... +..+..... .
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~---GIT~~iga~~v~~~~~~ItfiDTPGhe~-F~~m~~rga---~ 359 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAG---GITQHIGAYQVETNGGKITFLDTPGHEA-FTAMRARGA---Q 359 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccC---ceeeeccEEEEEECCEEEEEEECCCCcc-chhHHHhhh---h
Confidence 35678999999999999999999987655433322 222111 12333346789999999533 322221111 0
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
. + |+++.|++.. + ....+..+.+..... ...|+|+|+||+|...
T Consensus 360 ~-----------a--------------DiaILVVdAd-d---------Gv~~qT~e~i~~a~~-~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 360 V-----------T--------------DIVVLVVAAD-D---------GVMPQTIEAINHAKA-AGVPIIVAINKIDKPG 403 (787)
T ss_pred h-----------C--------------CEEEEEEECC-C---------CCCHhHHHHHHHHHh-cCCcEEEEEECccccc
Confidence 0 0 2222111110 0 011122223332222 4789999999996522
Q ss_pred hhhccchHHHHHHH---HHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 399 IKKKNKWLPKIKEW---VDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 399 ~~~~~~~~~~l~~~---~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.. .......+.+. .+.+....+++++||++|.|+.+|.+..
T Consensus 404 a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I 447 (787)
T PRK05306 404 AN-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAI 447 (787)
T ss_pred cC-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhh
Confidence 11 11122222221 1111113689999999999999886544
No 462
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.40 E-value=1.3e-07 Score=92.41 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCceEEEecCChhhhh---h-hccchHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCC
Q psy17315 384 AKTQIYLVNLSAKDYI---K-KKNKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~---~-~~~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~ 437 (561)
.+|+|+|+||+|.... . ......+.+++.+.... ...+++++||++|.||.+-.
T Consensus 137 ~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~ 197 (219)
T cd01883 137 VKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKS 197 (219)
T ss_pred CCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCC
Confidence 4789999999965310 0 01223344444444321 13679999999999998653
No 463
>PRK13351 elongation factor G; Reviewed
Probab=98.40 E-value=1e-06 Score=100.52 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC---cccC---------------CCcccccCccc--cccCCeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA---AAEN---------------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~---~~~~---------------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~ 156 (561)
.+|+++|..|+|||||+++|..... ..+. ..+.|...... .+....+.+|||||.....
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~- 87 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT- 87 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH-
Confidence 5799999999999999999975321 1110 11223222111 2235579999999986432
Q ss_pred cccccccccccccccCCEEEEEecccc
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
......++.+|++++|+|++.
T Consensus 88 ------~~~~~~l~~aD~~ilVvd~~~ 108 (687)
T PRK13351 88 ------GEVERSLRVLDGAVVVFDAVT 108 (687)
T ss_pred ------HHHHHHHHhCCEEEEEEeCCC
Confidence 123455688999999999863
No 464
>PRK13768 GTPase; Provisional
Probab=98.39 E-value=1.3e-06 Score=87.45 Aligned_cols=120 Identities=15% Similarity=0.047 Sum_probs=65.1
Q ss_pred CeEEEEeCCCcccCCcccccccccccccccc--CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hh
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA--CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VD 215 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~--~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~ 215 (561)
..+.++||||..++... ......+...+.. ++++++|+|++..... ........+... ..+ ....+ |+
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~----~d~~~~~~l~~~-~~~-~~~~~~i~v~ 169 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTP----SDFVSLLLLALS-VQL-RLGLPQIPVL 169 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCH----HHHHHHHHHHHH-HHH-HcCCCEEEEE
Confidence 36899999998765432 2333444444443 8999999987521100 000000000000 001 12222 89
Q ss_pred ccccccCcCCCCCccHHHHH------------------------H-HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 216 AKADSKKKMGPKKTDEGEKK------------------------M-LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 216 NK~D~~~~~~~~~~~~~~l~------------------------~-l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
||+|+.+...... ....+. . +.........+.+|+.++.|++.|+++|.+..
T Consensus 170 nK~D~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 170 NKADLLSEEELER-ILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred EhHhhcCchhHHH-HHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 9999985533210 000000 0 11112335779999999999999999998875
No 465
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.39 E-value=1.1e-06 Score=87.24 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=93.1
Q ss_pred hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcC------CC---cccCCCcccccCccc----------------------
Q psy17315 88 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKS------SA---AAENFPFCTIDPNEN---------------------- 136 (561)
Q Consensus 88 ~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~------~~---~~~~~~~~T~~~~~~---------------------- 136 (561)
.......+...|||.|.||||||||+-+|... .+ .+.|....|....-+
T Consensus 43 ~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~sr 122 (323)
T COG1703 43 ALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSR 122 (323)
T ss_pred HHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCC
Confidence 34566677789999999999999999999531 11 111111111111111
Q ss_pred -----------------cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhh
Q psy17315 137 -----------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRN 199 (561)
Q Consensus 137 -----------------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~ 199 (561)
.-.+..+.++-|.|+-... ..-+.-+|.+++|+= ...-..
T Consensus 123 G~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse----------v~I~~~aDt~~~v~~-------------pg~GD~ 179 (323)
T COG1703 123 GTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE----------VDIANMADTFLVVMI-------------PGAGDD 179 (323)
T ss_pred ccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch----------hHHhhhcceEEEEec-------------CCCCcH
Confidence 0123356777777663211 222455688877772 223456
Q ss_pred HHHHHHHHHHhcch-hhccccccCcCCCCCccHHHHHHHh----hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 200 LKLLETRIRDLRRS-VDAKADSKKKMGPKKTDEGEKKMLL----GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 200 ~~~l~~~l~~~~~~-v~NK~D~~~~~~~~~~~~~~l~~l~----~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
++.++..+.++... +.||.|.......--.....+.... ...+..+.+..|+..|.|+++|++.+.+..
T Consensus 180 ~Q~iK~GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 180 LQGIKAGIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHHhhhhhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 67777788887777 9999995422100000011122221 122456789999999999999999998763
No 466
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.38 E-value=3.4e-07 Score=89.86 Aligned_cols=85 Identities=15% Similarity=0.021 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC--CCcc-cCCCcccccCccccc-----cCCeEEEEeCCCcccCCccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS--SAAA-ENFPFCTIDPNENNK-----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~--~~~~-~~~~~~T~~~~~~~~-----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
.-|+|+|.+++|||||+|.|.+. ...+ ...+.||+....+.. ....+.++||||+....... ......+.+
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~-~~~~~~~~~ 86 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE-FEDDARLFA 86 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc-hhhhhHHHH
Confidence 46899999999999999999998 5443 345788887655421 13679999999998544321 011112222
Q ss_pred cc--cCCEEEEEeccc
Q psy17315 169 IS--ACDAIFHLCKEK 182 (561)
Q Consensus 169 i~--~~D~il~VvD~~ 182 (561)
+. -+|++++.++..
T Consensus 87 l~~llss~~i~n~~~~ 102 (224)
T cd01851 87 LATLLSSVLIYNSWET 102 (224)
T ss_pred HHHHHhCEEEEeccCc
Confidence 33 379999998653
No 467
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.38 E-value=2.2e-07 Score=103.52 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=80.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.|.+.|..++|||+|++++++.....-......|.+ +... .+...+..+.+|||||-++.... +..+...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~----~~~g~~~---- 73 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN----AIAGGGG---- 73 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH----HHhhhcc----
Confidence 588999999999999999997531110000112322 2211 12333456889999995443222 1111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCc-eEEEecCChhhhhhhc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT-QIYLVNLSAKDYIKKK 402 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP-~iiv~NK~D~d~~~~~ 402 (561)
+|.+..|++..+ .+..+..+.+..... .+.| +++|+||+|. .+..
T Consensus 74 ---------------------aD~aILVVDa~~----------G~~~qT~ehl~il~~-lgi~~iIVVlNK~Dl--v~~~ 119 (581)
T TIGR00475 74 ---------------------IDAALLVVDADE----------GVMTQTGEHLAVLDL-LGIPHTIVVITKADR--VNEE 119 (581)
T ss_pred ---------------------CCEEEEEEECCC----------CCcHHHHHHHHHHHH-cCCCeEEEEEECCCC--CCHH
Confidence 122222222111 011112222222222 3567 9999999954 3211
Q ss_pred --cchHHHHHHHHHhcC--CCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 --NKWLPKIKEWVDAND--PGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 --~~~~~~l~~~~~~~~--~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++++++.... ++.+++++||++|.|+.++.+...
T Consensus 120 ~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~ 162 (581)
T TIGR00475 120 EIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELK 162 (581)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHH
Confidence 112334555444321 257899999999999999866543
No 468
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.38 E-value=1.2e-06 Score=89.94 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=58.0
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-hhccc
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-VDAKA 218 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-v~NK~ 218 (561)
+..+.|+||||+.... ...+..+|.++++.+.. ..+.+..+...+.+.-.. +.||+
T Consensus 126 g~D~viidT~G~~~~e----------~~i~~~aD~i~vv~~~~-------------~~~el~~~~~~l~~~~~ivv~NK~ 182 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE----------VDIANMADTFVVVTIPG-------------TGDDLQGIKAGLMEIADIYVVNKA 182 (300)
T ss_pred CCCEEEEeCCCCchhh----------hHHHHhhceEEEEecCC-------------ccHHHHHHHHHHhhhccEEEEEcc
Confidence 4568999999975222 12345678888876322 112222222222222112 89999
Q ss_pred cccCcCCCCCccH---HHHHHHhhhcCC--CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 219 DSKKKMGPKKTDE---GEKKMLLGRVGT--NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 219 D~~~~~~~~~~~~---~~l~~l~~~~~~--~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
|............ ..+..+...... .+.+.+|+.+|.|++.|++++.+.
T Consensus 183 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 183 DGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred cccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 9984322100000 011222121111 358999999999999999999875
No 469
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.37 E-value=9.7e-08 Score=105.93 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=81.3
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc--chhhhhH-hhhcccHHHHHHHHHHHHHHHhhCCc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR--DIEIINE-ELRLKDVEHIEKEINKIEKLVQRGDK 318 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~--~~~~~~~-el~l~Dt~Gi~~~~~~l~~~~~~~~~ 318 (561)
...+.+.+.|..++|||+|++++.+..+.....+ |.+..+. .+.+.+. .+.+|||||-+ .+..+.... ..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~---GIT~~ig~~~v~~~~~~~i~~iDTPGhe-~F~~~r~rg---a~ 157 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAG---GITQHIGAYHVENEDGKMITFLDTPGHE-AFTSMRARG---AK 157 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCC---ceeecceEEEEEECCCcEEEEEECCCCc-chhhHHHhh---hc
Confidence 4568999999999999999999988755443322 2221111 1222233 78999999943 333322211 11
Q ss_pred cccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 319 KLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 319 ~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
. +|.+..|++.. + ....+..+.+..... ...|+++++||+|...
T Consensus 158 ~-------------------------aDiaILVVda~-d---------gv~~qT~e~i~~~~~-~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 158 V-------------------------TDIVVLVVAAD-D---------GVMPQTIEAISHAKA-ANVPIIVAINKIDKPE 201 (587)
T ss_pred c-------------------------CCEEEEEEECC-C---------CCCHhHHHHHHHHHH-cCCCEEEEEECccccc
Confidence 0 02221111110 0 011222233332222 4789999999996421
Q ss_pred hhhccchHHHHHHH---HHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 399 IKKKNKWLPKIKEW---VDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 399 ~~~~~~~~~~l~~~---~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.. .+.....+.+. ...+....+++++||++|.|+.+|.+..
T Consensus 202 ~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I 245 (587)
T TIGR00487 202 AN-PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMI 245 (587)
T ss_pred CC-HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence 11 11112222211 1111112579999999999999886544
No 470
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.37 E-value=5.5e-07 Score=99.87 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.|.+.|..|+|||+|+++|.+..+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~ 30 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA 30 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccc
Confidence 3578999999999999999999987654
No 471
>KOG0079|consensus
Probab=98.37 E-value=6e-07 Score=79.36 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=88.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
+..|+|-|+||||+|+-........-+-..-+..+.... .. ....+++|||+|....+. ..-...+...
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt-------itstyyrgth 82 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT-------ITSTYYRGTH 82 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH-------HHHHHccCCc
Confidence 467899999999999998876542211111111111110 11 123588999999754331 1123357789
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
.++.|.|.+.. ..+++...+.++++.--.. |+||.|.+++.....++........+. ..+.
T Consensus 83 gv~vVYDVTn~----------ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi----e~FE 148 (198)
T KOG0079|consen 83 GVIVVYDVTNG----------ESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI----ELFE 148 (198)
T ss_pred eEEEEEECcch----------hhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCc----hhee
Confidence 99999988632 2344454443333332111 899999998877665554443333222 3466
Q ss_pred EEccCCCCHHHHHHHHHhh
Q psy17315 249 IVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~ 267 (561)
.|++.+.+....|+-|++.
T Consensus 149 TSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 149 TSAKENENVEAMFHCITKQ 167 (198)
T ss_pred hhhhhcccchHHHHHHHHH
Confidence 7888888888887777765
No 472
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.37 E-value=3.5e-07 Score=87.35 Aligned_cols=66 Identities=26% Similarity=0.239 Sum_probs=44.6
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccC------CCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFE------DDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~------~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
.+....+....+.++|.+|+|||+|+|.|.+.... ...++..+|||.....+... ..+.++||||+
T Consensus 119 ~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~~~DtPG~ 190 (190)
T cd01855 119 AIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-NGKKLYDTPGI 190 (190)
T ss_pred HHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-CCCEEEeCcCC
Confidence 33333445578999999999999999999986431 23455666776332233222 25789999995
No 473
>KOG1423|consensus
Probab=98.36 E-value=5.5e-08 Score=96.05 Aligned_cols=59 Identities=25% Similarity=0.338 Sum_probs=42.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccch-hhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDI-EIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~-~~~~~el~l~Dt~Gi~ 303 (561)
....+++.|.||+|||+|.|.+.+. ....++....|| ..+.++ ...+.+++|.||||+-
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~--kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQ--KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLV 131 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCC--ccccccccccceeeeeeEEEecCceEEEEecCCccc
Confidence 3457999999999999999999998 444444433333 222333 3456789999999985
No 474
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.36 E-value=6.6e-07 Score=87.55 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=51.0
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcc-cCC---------------CcccccCccc--ccc----------CCeEEEEeCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAA-ENF---------------PFCTIDPNEN--NKV----------PAFLNVVDIA 149 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~-~~~---------------~~~T~~~~~~--~~~----------~~~i~l~Dtp 149 (561)
.|+++|.+++|||||+.+|......+ ... -|.|...... ... ...+.++|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 58999999999999999997543111 111 1223222110 111 3468899999
Q ss_pred CcccCCccccccccccccccccCCEEEEEeccc
Q psy17315 150 GLVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 150 G~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
|..... ......++.+|++++|+|+.
T Consensus 82 G~~~f~-------~~~~~~l~~aD~~ilVvD~~ 107 (222)
T cd01885 82 GHVDFS-------SEVTAALRLCDGALVVVDAV 107 (222)
T ss_pred CccccH-------HHHHHHHHhcCeeEEEEECC
Confidence 986433 23455678999999999876
No 475
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.1e-07 Score=97.29 Aligned_cols=119 Identities=31% Similarity=0.443 Sum_probs=85.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
...+.++|+||+|||||||++++...+.+++|| .|++|..++..+ .| .+++.+...... ++++.+.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF--~TIePN~Giv~v------~d-----~rl~~L~~~~~c-~~k~~~~ 67 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPF--CTIEPNVGVVYV------PD-----CRLDELAEIVKC-PPKIRPA 67 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCc--ccccCCeeEEec------Cc-----hHHHHHHHhcCC-CCcEEee
Confidence 457899999999999999999999888899999 678888764332 22 124444433321 2334344
Q ss_pred hhhhhhhhhhhhhhcc------------CCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhh
Q psy17315 324 YVSEVWFSFIYLFIKN------------GHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKL 379 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~------------~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~ 379 (561)
.++ +.||+|++.+ .+|+++|++.||++++++.+..|......+.+|+++++..
T Consensus 68 ~ve---~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~E 132 (372)
T COG0012 68 PVE---FVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTE 132 (372)
T ss_pred eeE---EEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHH
Confidence 433 3588999885 6899999999999999887788776666666777766644
No 476
>KOG1532|consensus
Probab=98.36 E-value=2.2e-06 Score=83.63 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=23.8
Q ss_pred cCCCCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 91 ~~~~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
+...++..+.++|+.|+||||+..+|..
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHH
Confidence 3455677899999999999999999974
No 477
>KOG0083|consensus
Probab=98.36 E-value=4.9e-08 Score=84.57 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=87.2
Q ss_pred EEccCCCCHHHHHHHHHhhccCCCcccccCCc--cccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhhh
Q psy17315 249 IVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE--VNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt--~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~ 326 (561)
+.|.+++||+-|+-.+....|...+...+-|- -+.+.+..-....+++|||+| +++++.+...+++.+...+.-+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtag-qerfrsvt~ayyrda~alllly-- 78 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG-QERFRSVTHAYYRDADALLLLY-- 78 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccc-hHHHhhhhHhhhcccceeeeee--
Confidence 45667777776655544444433332211111 012222223335688999999 6778888877776554433322
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc---c
Q psy17315 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK---N 403 (561)
Q Consensus 327 ~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~---~ 403 (561)
.|.+......+..|+.+ +.++.. ....++++.||+|. .... .
T Consensus 79 --------------diankasfdn~~~wlse------------------i~ey~k-~~v~l~llgnk~d~--a~er~v~~ 123 (192)
T KOG0083|consen 79 --------------DIANKASFDNCQAWLSE------------------IHEYAK-EAVALMLLGNKCDL--AHERAVKR 123 (192)
T ss_pred --------------ecccchhHHHHHHHHHH------------------HHHHHH-hhHhHhhhcccccc--chhhcccc
Confidence 44555666777777665 333333 35667789999954 2211 1
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
+.-+++ ++.. +.|++.+||++|.+++...-...++.
T Consensus 124 ddg~kl---a~~y--~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 124 DDGEKL---AEAY--GIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred chHHHH---HHHH--CCCceeccccccccHhHHHHHHHHHH
Confidence 122333 2333 78999999999999877654444443
No 478
>KOG4252|consensus
Probab=98.34 E-value=3e-06 Score=77.33 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=99.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..++.++|..++||+++++..+...|....--.+ |+ |-. +++.. ....+.+|||+| ++.++-+.+.++++++..
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktI-gv-dflerqi~v~~Edvr~mlWdtag-qeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI-GV-DFLERQIKVLIEDVRSMLWDTAG-QEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhcccccccccccc-ch-hhhhHHHHhhHHHHHHHHHHhcc-chhHHHHHHHHhccccce
Confidence 3578999999999999999999987765543222 22 222 33433 335688999999 555888888888887654
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
...+ +.++...++.+.+|.+. +.... ...|.++|-||+ |+++
T Consensus 97 vLVF----------------STTDr~SFea~~~w~~k------------------v~~e~--~~IPtV~vqNKI--Dlve 138 (246)
T KOG4252|consen 97 VLVF----------------STTDRYSFEATLEWYNK------------------VQKET--ERIPTVFVQNKI--DLVE 138 (246)
T ss_pred EEEE----------------ecccHHHHHHHHHHHHH------------------HHHHh--ccCCeEEeeccc--hhhH
Confidence 3333 22334555555555443 11111 478999999999 5554
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
+..-...+++..++.. +...+-+|++...++.....-.++.+.
T Consensus 139 ds~~~~~evE~lak~l--~~RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 139 DSQMDKGEVEGLAKKL--HKRLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhcchHHHHHHHHHh--hhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 3322223333333222 456788899999998776544444443
No 479
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.33 E-value=7.1e-07 Score=86.86 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=50.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCccc----CC---------------CcccccCcccc-------ccCCeEEEEeCCCc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAE----NF---------------PFCTIDPNENN-------KVPAFLNVVDIAGL 151 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~----~~---------------~~~T~~~~~~~-------~~~~~i~l~DtpG~ 151 (561)
+|+++|.+++|||||+++|+....... .. .|+|....... .....+.++||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986541111 01 12222211100 01246899999998
Q ss_pred ccCCccccccccccccccccCCEEEEEeccc
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.... ......++.+|++++|+|+.
T Consensus 82 ~~f~-------~~~~~~~~~aD~~llVvD~~ 105 (213)
T cd04167 82 VNFM-------DEVAAALRLSDGVVLVVDVV 105 (213)
T ss_pred cchH-------HHHHHHHHhCCEEEEEEECC
Confidence 6432 22345578899999999875
No 480
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.33 E-value=1.4e-06 Score=84.70 Aligned_cols=157 Identities=11% Similarity=0.052 Sum_probs=81.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..++.+.|.+|+||++|++.+....+.....+. .|. ..... ........+.+|||+|.. .+..+...+.......+
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~i~i~~~Dt~g~~-~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPT-LGVEVHPLKFYTNCGPICFNVWDTAGQE-KFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-cceEEEEEEEEECCeEEEEEEEECCCch-hhhhhhHHHhccCCEEE
Confidence 468999999999999999765554433222222 121 10000 001122467889999953 34444433332222211
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+...+..+..|+.. +.... ...|+++++||+|.. +
T Consensus 87 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~--~~~~i~lv~nK~Dl~--~- 127 (215)
T PTZ00132 87 IMF----------------DVTSRITYKNVPNWHRD------------------IVRVC--ENIPIVLVGNKVDVK--D- 127 (215)
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECccCc--c-
Confidence 111 22333444433333322 11111 368999999999542 1
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+ ..++.... +..++.+||+++.|++++.....+..
T Consensus 128 ~~~~~~-~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 128 RQVKAR-QITFHRKK--NLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred ccCCHH-HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111112 22333332 56789999999999877655554443
No 481
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.31 E-value=2.1e-07 Score=100.30 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=33.6
Q ss_pred CceEEEecCChhhhhhhc----cchHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCCH
Q psy17315 385 KTQIYLVNLSAKDYIKKK----NKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 385 kP~iiv~NK~D~d~~~~~----~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~~ 438 (561)
+|+++|+||+|. .... ....+++.+++.... ...+++++||++|.|+.++.+
T Consensus 140 ~~iivviNK~Dl--~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 140 NQLIVAINKMDA--VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred CeEEEEEEcccc--ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 579999999954 2211 122345555544321 125799999999999998754
No 482
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.31 E-value=1.3e-06 Score=88.40 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=37.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccC--------CCccc-ccCcccc-cc---CCeEEEEeCCCcccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAEN--------FPFCT-IDPNENN-KV---PAFLNVVDIAGLVKG 154 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~--------~~~~T-~~~~~~~-~~---~~~i~l~DtpG~~~~ 154 (561)
.++|+++|.+|+|||||+|+|.+.. ..... .+.++ ....... .. ...+.++||||+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 4689999999999999999999877 22221 12211 1111111 11 135899999998643
No 483
>KOG0072|consensus
Probab=98.30 E-value=7.1e-07 Score=78.68 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=97.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..+++.++|.-|+||+|+.-.|--.. ..+-|.+|...+..+. ..-.+.++|.-|..+-++ -+.-+..+.|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~y--KNLk~~vwdLggqtSirP-------yWRcYy~dt~ 87 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPY--KNLKFQVWDLGGQTSIRP-------YWRCYYADTD 87 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccccc--ccccceeeEccCcccccH-------HHHHHhcccc
Confidence 56899999999999999988775444 5566666666554443 334588999988754332 2334457889
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHH-HHHHHhcc-hhhccccccCcCCCCCccHHH-HHHHhhhcCCCcEEEEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLE-TRIRDLRR-SVDAKADSKKKMGPKKTDEGE-KKMLLGRVGTNLKVGIV 250 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~-~v~NK~D~~~~~~~~~~~~~~-l~~l~~~~~~~~~i~is 250 (561)
++++|||+++++..-.+..... ..+. ++|..-.. .++||.|...+....+..... +..+.. +.+..+..|
T Consensus 88 avIyVVDssd~dris~a~~el~-----~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~--r~~~Iv~tS 160 (182)
T KOG0072|consen 88 AVIYVVDSSDRDRISIAGVELY-----SMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD--RIWQIVKTS 160 (182)
T ss_pred eEEEEEeccchhhhhhhHHHHH-----HHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh--heeEEEeec
Confidence 9999999986543211111110 1111 12222111 189999998554322111111 222222 346778999
Q ss_pred ccCCCCHHHHHHHHHhhc
Q psy17315 251 GVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 251 g~~~~Gks~l~~~l~~~~ 268 (561)
|.+|+|++..++||.+..
T Consensus 161 A~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred cccccCCcHHHHHHHHHH
Confidence 999999999999998753
No 484
>KOG1491|consensus
Probab=98.30 E-value=3.2e-07 Score=92.01 Aligned_cols=126 Identities=33% Similarity=0.454 Sum_probs=93.1
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCC
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGD 317 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~ 317 (561)
+....+...+.++|++|+|||++||.|++.....+++|+ .|+||.+. ++.+.| ++++.+.+.|. +
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF--~TIdPn~a------~V~v~d-----~Rfd~l~~~Y~--~ 78 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPF--CTIDPNEA------RVEVPD-----SRFDLLCPIYG--P 78 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCc--ceeccccc------eeecCc-----hHHHHHHHhcC--C
Confidence 444566789999999999999999999999877888888 78888864 122222 33455555543 3
Q ss_pred ccccchhhhhhhhhhhhhhhcc------------CCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKN------------GHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL 381 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~------------~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~ 381 (561)
+.....+|+ ..||+|++.+ ++|+.+|.+.+|++++++.|..|......+-.|++++.....
T Consensus 79 ~~~vpa~l~---v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~ 151 (391)
T KOG1491|consen 79 KSKVPAFLT---VYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELR 151 (391)
T ss_pred cceeeeeEE---EEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHH
Confidence 444455543 3478888885 689999999999999998888887777777788887776544
No 485
>KOG0076|consensus
Probab=98.30 E-value=1e-06 Score=80.29 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=94.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC------CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS------AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~------~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l 166 (561)
..+.|+|+|+-|+||||++-++.... ..++.. -.|...+.+. .....+.+||.-|.-..+ .-+-
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki-~~tvgLnig~i~v~~~~l~fwdlgGQe~lr-------Slw~ 87 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKI-TPTVGLNIGTIEVCNAPLSFWDLGGQESLR-------SLWK 87 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHe-ecccceeecceeeccceeEEEEcCChHHHH-------HHHH
Confidence 44779999999999999999886432 111111 1222222221 124568899998874333 2334
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch--hhccccccCcCCCCCccHHHHHHHhh---h-
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS--VDAKADSKKKMGPKKTDEGEKKMLLG---R- 240 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--v~NK~D~~~~~~~~~~~~~~l~~l~~---~- 240 (561)
.....|++|++|+|++.++....+.....- ...++..+-... .+||.|+....+ ..+++...+ .
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~-----v~~~E~leg~p~L~lankqd~q~~~~-----~~El~~~~~~~e~~ 157 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEESKTAFEK-----VVENEKLEGAPVLVLANKQDLQNAME-----AAELDGVFGLAELI 157 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHHHHHHHH-----HHHHHHhcCCchhhhcchhhhhhhhh-----HHHHHHHhhhhhhc
Confidence 456778999999999865533322222110 111222221111 789999885433 233333332 1
Q ss_pred -cCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 241 -VGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 241 -~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
-+..+..++||.+|.|+..-+.|+.+...
T Consensus 158 ~~rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 158 PRRDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred CCccCccccchhhhcccHHHHHHHHHHHHh
Confidence 14567899999999999999999988753
No 486
>KOG0091|consensus
Probab=98.29 E-value=3.3e-06 Score=76.02 Aligned_cols=150 Identities=14% Similarity=0.107 Sum_probs=96.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc---cc--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN---NK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~---~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.+..+||-+.||||+|+...|..+ +..+ -|.+..+.... .. ....++||||+|.....+- ...+.|
T Consensus 9 frlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~riklqlwdtagqerfrsi-------tksyyr 80 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSI-------TKSYYR 80 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHH-------HHHHhh
Confidence 578899999999999999999776 3333 23333332221 11 1236899999998655531 234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHH-HHhcch-------hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRI-RDLRRS-------VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~-------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
++-.++.|.|.+. ...++.+..+-++. +...-+ |+.|+|+......+....+.+.....
T Consensus 81 nsvgvllvyditn----------r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg--- 147 (213)
T KOG0091|consen 81 NSVGVLLVYDITN----------RESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG--- 147 (213)
T ss_pred cccceEEEEeccc----------hhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC---
Confidence 8888999998763 22445554433332 222212 88999998555544333333333322
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..-|..|+++|+++.+-+..|++..
T Consensus 148 -M~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 148 -MAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred -ceEEEecccCCCcHHHHHHHHHHHH
Confidence 2568999999999999999998864
No 487
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.27 E-value=3.9e-07 Score=102.89 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+.|..++|||||++.|....
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~ 48 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDS 48 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHh
Confidence 44679999999999999999998763
No 488
>KOG0462|consensus
Probab=98.26 E-value=5.4e-06 Score=87.90 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=94.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC---------------CcccCCCcccccCccc--cccC---CeEEEEeCCCcccCCc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS---------------AAAENFPFCTIDPNEN--NKVP---AFLNVVDIAGLVKGAA 156 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~---------------~~~~~~~~~T~~~~~~--~~~~---~~i~l~DtpG~~~~~~ 156 (561)
..++||-.--=|||||.-+|.... ..+...-|.|...++. .+.+ .-+.+|||||.+....
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 358888888899999999986422 1234456777766554 2233 4688999999986653
Q ss_pred cccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--chhhccccccCcCCCCCccHHHH
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RSVDAKADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~v~NK~D~~~~~~~~~~~~~~l 234 (561)
+ .-..+..||.+++|||+...-.. ..+-.+...+..-. .+|.||+|++.+ +.+..
T Consensus 141 E-------VsRslaac~G~lLvVDA~qGvqA----------QT~anf~lAfe~~L~iIpVlNKIDlp~a------dpe~V 197 (650)
T KOG0462|consen 141 E-------VSRSLAACDGALLVVDASQGVQA----------QTVANFYLAFEAGLAIIPVLNKIDLPSA------DPERV 197 (650)
T ss_pred e-------ehehhhhcCceEEEEEcCcCchH----------HHHHHHHHHHHcCCeEEEeeeccCCCCC------CHHHH
Confidence 2 23345678999999998631100 00111111111111 129999999843 33333
Q ss_pred HH-Hhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KM-LLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~-l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.. +.+. .+....|.+||++|-|.++++.++.++.
T Consensus 198 ~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 198 ENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred HHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence 22 2222 2455789999999999999999999984
No 489
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.26 E-value=3e-07 Score=90.23 Aligned_cols=26 Identities=38% Similarity=0.695 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
++.++|..++||++|++.++...+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~ 26 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN 26 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 36789999999999999999765543
No 490
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.25 E-value=4.7e-07 Score=101.22 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=78.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.|.+.|..++|||+|+++|++............|.+ +... .+.. .+..+.+|||||.++.... +..+...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~----m~~g~~~--- 74 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN----MLAGVGG--- 74 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH----HHHHhhc---
Confidence 588999999999999999987421111000111222 1110 1111 1345789999996443222 1111110
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCc-eEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT-QIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP-~iiv~NK~D~d~~~~ 401 (561)
+|.+..|++.- ..+.....+.+..... .+.| +++|+||+|. .+.
T Consensus 75 ----------------------~D~~lLVVda~----------eg~~~qT~ehl~il~~-lgi~~iIVVlNKiDl--v~~ 119 (614)
T PRK10512 75 ----------------------IDHALLVVACD----------DGVMAQTREHLAILQL-TGNPMLTVALTKADR--VDE 119 (614)
T ss_pred ----------------------CCEEEEEEECC----------CCCcHHHHHHHHHHHH-cCCCeEEEEEECCcc--CCH
Confidence 12222222210 0122333333333322 3456 5799999954 321
Q ss_pred --ccchHHHHHHHHHhc-CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 --KNKWLPKIKEWVDAN-DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 --~~~~~~~l~~~~~~~-~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+++.+++... ..+.+++++||++|.|+++|.+..
T Consensus 120 ~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L 161 (614)
T PRK10512 120 ARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHL 161 (614)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHH
Confidence 112334555554432 124689999999999998886554
No 491
>KOG0395|consensus
Probab=98.24 E-value=4.7e-06 Score=79.97 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=91.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..+|.++|.+|||||+|...+.+.... ..+..+.-+.... ......+.++||+|..+.. .+. ...++.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~----~~~---~~~~~~ 74 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS----AMR---DLYIRN 74 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEEEECCEEEEEEEEcCCCcccCh----HHH---HHhhcc
Confidence 468999999999999999998876521 1122222111110 1122357899999943222 121 234678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|..+.|++.+ ....|+.+..+.+++...... |+||+|+.............+ .....-
T Consensus 75 ~~gF~lVysit----------d~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l----a~~~~~ 140 (196)
T KOG0395|consen 75 GDGFLLVYSIT----------DRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL----ARSWGC 140 (196)
T ss_pred CcEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH----HHhcCC
Confidence 89999999554 334555555555555332221 999999986533332221222 222222
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.-+.+|++.+.+++.+|..|...
T Consensus 141 ~f~E~Sak~~~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 141 AFIETSAKLNYNVDEVFYELVRE 163 (196)
T ss_pred cEEEeeccCCcCHHHHHHHHHHH
Confidence 47899999999999999999885
No 492
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.23 E-value=5.2e-07 Score=88.53 Aligned_cols=60 Identities=23% Similarity=0.244 Sum_probs=42.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-ch-hhhhHhhhcccHHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DI-EIINEELRLKDVEHIEKE 305 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~-~~~~~el~l~Dt~Gi~~~ 305 (561)
...+.+.|.||+|||+|+|+|.+. +...++.++.+++|.. .. ...+.-+.+|||||+...
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~--~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQG--EVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhc--cCceeeecccCCCchhhHHhhccccceEEecCCCcccc
Confidence 345669999999999999999976 4455555554455543 22 233466999999998763
No 493
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.23 E-value=2.4e-07 Score=70.97 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=48.6
Q ss_pred eccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEE
Q psy17315 469 YFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 548 (561)
Q Consensus 469 ~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~ 548 (561)
.+|+. .+..+. +++|+|+.|+|..||+++++.|+.|.|++ ++++.+|.++|||+|+|.
T Consensus 2 ~v~lp-dG~~~~--~~~g~T~~d~A~~I~~~l~~~~~~A~Vng-------------------~~vdl~~~L~~~d~v~ii 59 (60)
T PF02824_consen 2 RVYLP-DGSIKE--LPEGSTVLDVAYSIHSSLAKRAVAAKVNG-------------------QLVDLDHPLEDGDVVEII 59 (60)
T ss_dssp EEEET-TSCEEE--EETTBBHHHHHHHHSHHHHHCEEEEEETT-------------------EEEETTSBB-SSEEEEEE
T ss_pred EEECC-CCCeee--CCCCCCHHHHHHHHCHHHHhheeEEEEcC-------------------EECCCCCCcCCCCEEEEE
Confidence 45663 356655 99999999999999999999999999653 889999999999999984
No 494
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.23 E-value=6.3e-07 Score=99.97 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=34.6
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.+.|+++|+||+|..... .....+++.+.+.. +..+++++||++|.|+.+|.+...
T Consensus 121 ~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~--~~~~vi~vSAktG~GI~~Lle~I~ 176 (595)
T TIGR01393 121 NDLEIIPVINKIDLPSAD-PERVKKEIEEVIGL--DASEAILASAKTGIGIEEILEAIV 176 (595)
T ss_pred cCCCEEEEEECcCCCccC-HHHHHHHHHHHhCC--CcceEEEeeccCCCCHHHHHHHHH
Confidence 468999999999642111 11222344433321 123589999999999988765543
No 495
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.22 E-value=1.1e-06 Score=88.57 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=33.5
Q ss_pred HHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhh
Q psy17315 372 DIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFE 430 (561)
Q Consensus 372 e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~ 430 (561)
+...+..... ..+|+++++||+|....+ ....++.+++.+... +...++|+||..+
T Consensus 105 t~~~~~~~~~-~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~-~~~~~~Pisa~~~ 160 (270)
T cd01886 105 TETVWRQADR-YNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGAN-PVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHHHH-cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCC-ceEEEeccccCCC
Confidence 3344443332 579999999999643211 233456666665443 3456789998643
No 496
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.21 E-value=4.9e-07 Score=85.22 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=82.8
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
....+|.+.|..|+||+++++.+....+. .+.++.|.. +..+...+..+.+||++| +..+..+++.+......+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~--~~~pT~g~~--~~~i~~~~~~~~~~d~gG-~~~~~~~w~~y~~~~~~i- 85 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS--ETIPTIGFN--IEEIKYKGYSLTIWDLGG-QESFRPLWKSYFQNADGI- 85 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE--EEEEESSEE--EEEEEETTEEEEEEEESS-SGGGGGGGGGGHTTESEE-
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc--ccCcccccc--cceeeeCcEEEEEEeccc-cccccccceeecccccee-
Confidence 34578999999999999999999865322 222222321 123444566789999999 333444555544322221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
+..++++| .+.+.... ++...+-.......+|+++++||.|...
T Consensus 86 ---IfVvDssd------------~~~l~e~~------------------~~L~~ll~~~~~~~~piLIl~NK~D~~~--- 129 (175)
T PF00025_consen 86 ---IFVVDSSD------------PERLQEAK------------------EELKELLNDPELKDIPILILANKQDLPD--- 129 (175)
T ss_dssp ---EEEEETTG------------GGGHHHHH------------------HHHHHHHTSGGGTTSEEEEEEESTTSTT---
T ss_pred ---EEEEeccc------------ceeecccc------------------cchhhhcchhhcccceEEEEeccccccC---
Confidence 22222221 01111111 1111121112235799999999996422
Q ss_pred ccchHHHHHHHHHh--c--CCCCeEEeechhhhhhhCCC
Q psy17315 402 KNKWLPKIKEWVDA--N--DPGATIIPFSGVFEHQLVDM 436 (561)
Q Consensus 402 ~~~~~~~l~~~~~~--~--~~~~~vi~iSA~~~~gl~~L 436 (561)
....+++.+.+.. . .....++.+||.+|.|+.+.
T Consensus 130 -~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 130 -AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp -SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred -cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence 1223444443321 1 12456899999999997554
No 497
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.21 E-value=2.2e-06 Score=94.15 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC---CcccCCC------cccccCccc---------------cccCCeEEEEeCCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS---AAAENFP------FCTIDPNEN---------------NKVPAFLNVVDIAG 150 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~------~~T~~~~~~---------------~~~~~~i~l~DtpG 150 (561)
...+++++|.+|+|||||+++|.... ...+... .++.+.... .+.+..+.++||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 34579999999999999999985321 1111111 112211110 12345789999999
Q ss_pred cccCCccccccccccccccccCCEEEEEeccc
Q psy17315 151 LVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
..... ......++.+|++++|+|++
T Consensus 90 ~~df~-------~~~~~~l~~aD~aIlVvDa~ 114 (527)
T TIGR00503 90 HEDFS-------EDTYRTLTAVDNCLMVIDAA 114 (527)
T ss_pred hhhHH-------HHHHHHHHhCCEEEEEEECC
Confidence 84222 22355678899999999986
No 498
>PRK12740 elongation factor G; Reviewed
Probab=98.20 E-value=3.9e-06 Score=95.65 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=47.5
Q ss_pred EEcCCCCHHHHHHHHhcCC---CcccC---------------CCcccccCccc--cccCCeEEEEeCCCcccCCcccccc
Q psy17315 102 VGVPNVGKSTFFNVLTKSS---AAAEN---------------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGL 161 (561)
Q Consensus 102 vG~pnvGKStlin~L~~~~---~~~~~---------------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~ 161 (561)
+|.+|+|||||+++|.... ...+. ..|.|...... .+.+..+.++||||.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~------ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT------ 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH------
Confidence 5899999999999995432 11111 12333322111 2335579999999985321
Q ss_pred ccccccccccCCEEEEEecccc
Q psy17315 162 GNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 162 ~~~~l~~i~~~D~il~VvD~~~ 183 (561)
......++.+|++++|+|++.
T Consensus 75 -~~~~~~l~~aD~vllvvd~~~ 95 (668)
T PRK12740 75 -GEVERALRVLDGAVVVVCAVG 95 (668)
T ss_pred -HHHHHHHHHhCeEEEEEeCCC
Confidence 123455688999999999863
No 499
>KOG2486|consensus
Probab=98.20 E-value=1.6e-06 Score=84.86 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=46.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--Ccc-cCCCcccccCccccccCCeEEEEeCCCcc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAA-ENFPFCTIDPNENNKVPAFLNVVDIAGLV 152 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~-~~~~~~T~~~~~~~~~~~~i~l~DtpG~~ 152 (561)
..+.+++.|.+|||||||+|.++..+ ..+ +..+|.|+..+. ...+..++++|.||+-
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~-f~v~~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINH-FHVGKSWYEVDLPGYG 194 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeee-eeccceEEEEecCCcc
Confidence 45789999999999999999999877 333 348999988665 5667789999999953
No 500
>KOG1145|consensus
Probab=98.19 E-value=6.6e-06 Score=87.23 Aligned_cols=151 Identities=17% Similarity=0.096 Sum_probs=96.4
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc---cccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
.++++-|-|+|.--=|||||+.+|.+.....+...|.|.+.-.. ...+..|.|+||||...+.. |. ..-.
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a----MR---aRGA 222 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA----MR---ARGA 222 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHH----HH---hccC
Confidence 34677899999999999999999999887667778888764221 22456899999999753331 10 1112
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh------
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR------ 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~------ 240 (561)
.-+|++++||.+.+.- -....+.+. ....-..+ ..||||++++ ..+....+|+..
T Consensus 223 ~vtDIvVLVVAadDGV-------mpQT~EaIk----hAk~A~VpiVvAinKiDkp~a-----~pekv~~eL~~~gi~~E~ 286 (683)
T KOG1145|consen 223 NVTDIVVLVVAADDGV-------MPQTLEAIK----HAKSANVPIVVAINKIDKPGA-----NPEKVKRELLSQGIVVED 286 (683)
T ss_pred ccccEEEEEEEccCCc-------cHhHHHHHH----HHHhcCCCEEEEEeccCCCCC-----CHHHHHHHHHHcCccHHH
Confidence 4469999999543210 001111111 11111122 6899998732 233334454433
Q ss_pred -cCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 241 -VGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 241 -~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
-+.-..|++|+++|.|+..|..++.-
T Consensus 287 ~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 287 LGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred cCCceeEEEeecccCCChHHHHHHHHH
Confidence 24557899999999999999888754
Done!