Query psy17315
Match_columns 561
No_of_seqs 533 out of 5104
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:52:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ohf_A Protein OLA1, GTP-bindi 100.0 1.8E-67 6.2E-72 550.6 20.9 358 88-555 14-393 (396)
2 1jal_A YCHF protein; nucleotid 100.0 3E-67 1E-71 544.2 21.1 342 96-551 2-363 (363)
3 2dby_A GTP-binding protein; GD 100.0 1.7E-65 5.7E-70 534.6 24.2 342 97-551 2-368 (368)
4 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 2.3E-64 8E-69 528.7 24.2 358 89-551 13-391 (392)
5 1wxq_A GTP-binding protein; st 100.0 2.7E-44 9.2E-49 379.4 16.4 330 97-550 1-395 (397)
6 4a9a_A Ribosome-interacting GT 100.0 4.9E-43 1.7E-47 364.9 16.6 288 96-548 72-374 (376)
7 2hjg_A GTP-binding protein ENG 99.9 1.1E-27 3.8E-32 256.5 13.9 322 97-463 4-368 (436)
8 1mky_A Probable GTP-binding pr 99.9 2.9E-28 1E-32 261.3 6.1 319 97-463 2-374 (439)
9 4dcu_A GTP-binding protein ENG 99.9 5.6E-27 1.9E-31 252.5 13.0 323 96-463 23-388 (456)
10 1puj_A YLQF, conserved hypothe 99.8 6.8E-20 2.3E-24 184.6 10.6 140 6-156 24-180 (282)
11 3cnl_A YLQF, putative uncharac 99.7 6.4E-18 2.2E-22 168.3 7.0 129 6-155 22-158 (262)
12 2qtf_A Protein HFLX, GTP-bindi 99.7 2.5E-17 8.4E-22 171.7 4.3 161 96-268 178-352 (364)
13 2e87_A Hypothetical protein PH 99.7 3.2E-17 1.1E-21 170.7 5.1 238 11-268 63-334 (357)
14 1lnz_A SPO0B-associated GTP-bi 99.7 5.5E-17 1.9E-21 167.5 6.3 160 97-270 159-330 (342)
15 3b1v_A Ferrous iron uptake tra 99.6 3.6E-16 1.2E-20 156.5 11.2 153 96-267 3-161 (272)
16 3iby_A Ferrous iron transport 99.6 1.3E-16 4.4E-21 158.4 7.6 152 97-267 2-164 (256)
17 3iev_A GTP-binding protein ERA 99.6 5.3E-16 1.8E-20 158.2 10.9 164 95-271 9-183 (308)
18 3ec1_A YQEH GTPase; atnos1, at 99.6 3.6E-16 1.2E-20 163.3 9.1 160 7-182 73-256 (369)
19 4dcu_A GTP-binding protein ENG 99.6 1.2E-16 4.2E-21 171.7 4.8 240 6-267 103-366 (456)
20 3i8s_A Ferrous iron transport 99.6 3.7E-16 1.3E-20 156.7 7.4 156 96-269 3-168 (274)
21 1wf3_A GTP-binding protein; GT 99.6 8.7E-16 3E-20 156.0 9.5 157 97-270 8-173 (301)
22 1mky_A Probable GTP-binding pr 99.6 8.5E-16 2.9E-20 164.4 9.6 241 5-267 81-352 (439)
23 2hjg_A GTP-binding protein ENG 99.6 1.7E-16 5.9E-21 169.6 4.0 240 6-267 83-346 (436)
24 3a1s_A Iron(II) transport prot 99.6 1.4E-15 4.6E-20 151.2 8.5 154 96-268 5-165 (258)
25 2eki_A DRG 1, developmentally- 99.6 6E-16 2.1E-20 125.7 4.1 80 461-552 5-89 (93)
26 1xzp_A Probable tRNA modificat 99.6 2.4E-15 8.3E-20 161.9 9.7 154 95-268 242-403 (482)
27 3pqc_A Probable GTP-binding pr 99.6 4.6E-15 1.6E-19 139.3 9.1 161 95-268 22-192 (195)
28 2wji_A Ferrous iron transport 99.6 8.6E-15 3E-19 134.7 10.7 152 97-267 4-162 (165)
29 3gee_A MNME, tRNA modification 99.6 6.5E-15 2.2E-19 158.5 11.0 159 94-269 231-397 (476)
30 2gj8_A MNME, tRNA modification 99.6 4E-15 1.4E-19 138.2 8.1 152 95-268 3-164 (172)
31 4dhe_A Probable GTP-binding pr 99.6 1.6E-15 5.5E-20 146.2 5.6 162 95-268 28-209 (223)
32 3h2y_A GTPase family protein; 99.5 2.8E-15 9.7E-20 156.4 6.7 160 7-182 71-255 (368)
33 2dyk_A GTP-binding protein; GT 99.5 7.1E-15 2.4E-19 133.6 8.3 152 97-267 2-159 (161)
34 3q72_A GTP-binding protein RAD 99.5 2.9E-14 1E-18 130.3 11.1 151 96-267 2-161 (166)
35 1svi_A GTP-binding protein YSX 99.5 8.8E-15 3E-19 137.8 7.7 160 95-267 22-192 (195)
36 1ega_A Protein (GTP-binding pr 99.5 1.6E-14 5.4E-19 146.8 9.6 159 97-270 9-175 (301)
37 3k53_A Ferrous iron transport 99.5 1.6E-14 5.6E-19 144.4 9.5 154 96-268 3-164 (271)
38 3geh_A MNME, tRNA modification 99.5 1.1E-14 3.8E-19 156.0 8.4 156 95-269 223-383 (462)
39 3tw8_B RAS-related protein RAB 99.5 6.2E-14 2.1E-18 129.7 12.4 153 95-268 8-169 (181)
40 2qu8_A Putative nucleolar GTP- 99.5 2.3E-14 7.9E-19 139.2 9.8 165 95-267 28-202 (228)
41 1z0j_A RAB-22, RAS-related pro 99.5 4.9E-14 1.7E-18 129.1 11.4 152 96-268 6-167 (170)
42 1z08_A RAS-related protein RAB 99.5 9E-14 3.1E-18 127.4 12.5 153 95-268 5-167 (170)
43 1ek0_A Protein (GTP-binding pr 99.5 1.5E-13 5.2E-18 125.6 13.8 155 96-268 3-167 (170)
44 3tkl_A RAS-related protein RAB 99.5 1.1E-13 3.7E-18 130.2 12.4 153 95-268 15-177 (196)
45 2nzj_A GTP-binding protein REM 99.5 1.1E-13 3.8E-18 127.4 11.4 154 96-268 4-167 (175)
46 2hxs_A RAB-26, RAS-related pro 99.5 1.3E-13 4.3E-18 127.6 11.6 154 95-269 5-172 (178)
47 2g6b_A RAS-related protein RAB 99.5 2.6E-13 8.9E-18 125.7 13.7 153 95-268 9-172 (180)
48 2fg5_A RAB-22B, RAS-related pr 99.5 1.4E-13 4.8E-18 129.7 11.9 153 95-268 22-184 (192)
49 1f6b_A SAR1; gtpases, N-termin 99.5 2.3E-13 8E-18 129.1 13.5 150 94-267 23-196 (198)
50 1ky3_A GTP-binding protein YPT 99.5 4.2E-13 1.4E-17 124.2 14.9 155 95-268 7-176 (182)
51 1r2q_A RAS-related protein RAB 99.5 1.2E-13 4.1E-18 126.3 11.0 152 96-268 6-167 (170)
52 1c1y_A RAS-related protein RAP 99.5 1.8E-13 6.2E-18 124.8 12.1 151 96-267 3-164 (167)
53 2bcg_Y Protein YP2, GTP-bindin 99.5 3.3E-13 1.1E-17 128.4 14.1 153 95-268 7-169 (206)
54 1g16_A RAS-related protein SEC 99.5 3.3E-13 1.1E-17 123.5 13.2 151 96-268 3-163 (170)
55 1z2a_A RAS-related protein RAB 99.5 1.6E-13 5.6E-18 125.3 11.1 153 95-268 4-165 (168)
56 2efe_B Small GTP-binding prote 99.5 2.4E-13 8.1E-18 126.0 12.2 153 95-268 11-173 (181)
57 2y8e_A RAB-protein 6, GH09086P 99.5 2.7E-13 9.1E-18 125.2 12.5 152 96-268 14-175 (179)
58 2gf9_A RAS-related protein RAB 99.5 3.5E-13 1.2E-17 126.4 13.4 153 95-268 21-183 (189)
59 1m2o_B GTP-binding protein SAR 99.5 4.1E-13 1.4E-17 126.5 13.9 149 95-267 22-189 (190)
60 1upt_A ARL1, ADP-ribosylation 99.5 4.8E-13 1.7E-17 122.6 14.0 150 95-268 6-167 (171)
61 2ew1_A RAS-related protein RAB 99.5 2.7E-13 9.1E-18 129.3 12.6 153 95-268 25-187 (201)
62 2h17_A ADP-ribosylation factor 99.5 3.6E-13 1.2E-17 125.5 13.1 150 94-267 19-180 (181)
63 1wms_A RAB-9, RAB9, RAS-relate 99.5 3.7E-13 1.3E-17 124.2 13.1 154 95-269 6-173 (177)
64 3reg_A RHO-like small GTPase; 99.5 6.4E-13 2.2E-17 125.1 14.9 159 94-270 21-188 (194)
65 2lkc_A Translation initiation 99.5 3.9E-13 1.3E-17 124.2 13.0 150 94-267 6-168 (178)
66 2il1_A RAB12; G-protein, GDP, 99.5 1.6E-13 5.4E-18 129.4 10.4 154 95-268 25-188 (192)
67 1vg8_A RAS-related protein RAB 99.5 5.1E-13 1.8E-17 126.8 14.0 153 95-268 7-173 (207)
68 2wjg_A FEOB, ferrous iron tran 99.5 1E-13 3.5E-18 129.6 9.0 154 96-268 7-167 (188)
69 2erx_A GTP-binding protein DI- 99.5 1.4E-13 5E-18 126.0 9.8 152 96-268 3-165 (172)
70 2bme_A RAB4A, RAS-related prot 99.5 3E-13 1E-17 126.1 11.9 153 95-268 9-171 (186)
71 1zj6_A ADP-ribosylation factor 99.5 3.6E-13 1.2E-17 126.1 12.5 152 94-269 14-177 (187)
72 2oil_A CATX-8, RAS-related pro 99.5 2.7E-13 9.1E-18 127.6 11.5 154 94-268 23-186 (193)
73 2cxx_A Probable GTP-binding pr 99.5 2.6E-13 8.8E-18 126.8 11.3 155 97-268 2-182 (190)
74 2gco_A H9, RHO-related GTP-bin 99.5 1.2E-12 4.2E-17 124.2 16.1 157 95-268 24-198 (201)
75 1fzq_A ADP-ribosylation factor 99.5 2.9E-13 1E-17 126.4 11.5 151 94-268 14-176 (181)
76 4bas_A ADP-ribosylation factor 99.5 5.5E-13 1.9E-17 125.6 13.4 150 95-268 16-187 (199)
77 1moz_A ARL1, ADP-ribosylation 99.4 5E-13 1.7E-17 124.2 12.8 148 94-268 16-178 (183)
78 1z0f_A RAB14, member RAS oncog 99.4 3.1E-13 1.1E-17 124.7 11.2 153 95-268 14-176 (179)
79 3clv_A RAB5 protein, putative; 99.4 1.1E-12 3.7E-17 123.6 14.8 152 95-268 6-202 (208)
80 2a5j_A RAS-related protein RAB 99.4 5E-13 1.7E-17 125.6 12.2 153 95-268 20-182 (191)
81 2fu5_C RAS-related protein RAB 99.4 1.5E-13 5E-18 128.0 8.3 153 95-268 7-169 (183)
82 3cph_A RAS-related protein SEC 99.4 4.8E-13 1.6E-17 127.6 11.9 152 95-268 19-180 (213)
83 3t1o_A Gliding protein MGLA; G 99.4 6.4E-13 2.2E-17 124.7 12.6 155 95-268 13-190 (198)
84 1udx_A The GTP-binding protein 99.4 3.3E-13 1.1E-17 142.5 11.5 156 95-269 156-324 (416)
85 2x77_A ADP-ribosylation factor 99.4 9.8E-13 3.4E-17 123.2 13.6 151 94-268 20-182 (189)
86 2h57_A ADP-ribosylation factor 99.4 1.1E-12 3.6E-17 123.2 13.8 152 94-268 19-185 (190)
87 3t5g_A GTP-binding protein RHE 99.4 6.3E-13 2.1E-17 123.4 12.1 153 96-270 6-169 (181)
88 1ksh_A ARF-like protein 2; sma 99.4 8E-13 2.7E-17 123.4 12.8 151 94-268 16-178 (186)
89 1zbd_A Rabphilin-3A; G protein 99.4 4.5E-13 1.5E-17 127.0 11.2 152 96-268 8-169 (203)
90 2o52_A RAS-related protein RAB 99.4 3.9E-13 1.3E-17 127.6 10.8 154 94-268 23-186 (200)
91 1zd9_A ADP-ribosylation factor 99.4 4.3E-13 1.5E-17 125.9 10.9 151 94-268 20-183 (188)
92 1kao_A RAP2A; GTP-binding prot 99.4 3.1E-13 1.1E-17 123.0 9.7 150 96-267 3-163 (167)
93 3q85_A GTP-binding protein REM 99.4 3.5E-13 1.2E-17 123.4 10.1 151 97-267 3-164 (169)
94 1u8z_A RAS-related protein RAL 99.4 4.4E-13 1.5E-17 122.1 10.6 151 96-268 4-165 (168)
95 3bc1_A RAS-related protein RAB 99.4 7.3E-13 2.5E-17 123.8 12.3 153 95-268 10-183 (195)
96 2iwr_A Centaurin gamma 1; ANK 99.4 6.2E-13 2.1E-17 123.1 11.6 149 95-268 6-167 (178)
97 3kkq_A RAS-related protein M-R 99.4 8.9E-13 3E-17 122.6 12.6 153 95-268 17-180 (183)
98 2hup_A RAS-related protein RAB 99.4 6.4E-13 2.2E-17 126.3 11.8 154 95-268 28-191 (201)
99 2q3h_A RAS homolog gene family 99.4 1.2E-12 4E-17 123.9 13.6 157 94-268 18-193 (201)
100 3bwd_D RAC-like GTP-binding pr 99.4 6.9E-13 2.3E-17 123.0 11.7 156 95-268 7-179 (182)
101 2fv8_A H6, RHO-related GTP-bin 99.4 2.2E-12 7.6E-17 123.0 15.5 157 96-269 25-199 (207)
102 3oes_A GTPase rhebl1; small GT 99.4 5.4E-13 1.8E-17 126.6 10.8 153 95-269 23-186 (201)
103 4dsu_A GTPase KRAS, isoform 2B 99.4 8.4E-13 2.9E-17 123.1 11.9 150 96-268 4-164 (189)
104 2fn4_A P23, RAS-related protei 99.4 1.1E-12 3.9E-17 121.1 12.7 152 95-268 8-170 (181)
105 3dz8_A RAS-related protein RAB 99.4 2E-13 6.8E-18 128.4 7.5 153 95-268 22-184 (191)
106 1r8s_A ADP-ribosylation factor 99.4 1.1E-12 3.9E-17 119.4 12.3 147 97-268 1-160 (164)
107 4djt_A GTP-binding nuclear pro 99.4 2.2E-13 7.6E-18 130.8 7.8 157 94-271 9-176 (218)
108 3cpj_B GTP-binding protein YPT 99.4 1.3E-12 4.4E-17 126.2 13.3 154 95-269 12-175 (223)
109 1mh1_A RAC1; GTP-binding, GTPa 99.4 1.7E-12 5.8E-17 120.6 13.6 156 96-269 5-179 (186)
110 3l0i_B RAS-related protein RAB 99.4 5.2E-14 1.8E-18 133.4 3.3 153 95-268 32-194 (199)
111 3qq5_A Small GTP-binding prote 99.4 1.4E-13 4.7E-18 145.8 6.8 158 95-271 33-197 (423)
112 1z06_A RAS-related protein RAB 99.4 5.2E-13 1.8E-17 125.2 10.1 154 95-268 19-186 (189)
113 2atx_A Small GTP binding prote 99.4 3.8E-12 1.3E-16 119.7 15.8 155 96-268 18-191 (194)
114 4gzl_A RAS-related C3 botulinu 99.4 1.6E-12 5.4E-17 123.9 13.2 156 94-267 28-202 (204)
115 2p5s_A RAS and EF-hand domain 99.4 6.3E-13 2.2E-17 125.9 10.0 156 95-268 27-195 (199)
116 3ihw_A Centg3; RAS, centaurin, 99.4 1.4E-12 4.9E-17 122.2 12.3 150 94-268 18-178 (184)
117 2atv_A RERG, RAS-like estrogen 99.4 1.3E-12 4.5E-17 123.3 11.8 153 94-268 26-189 (196)
118 2a9k_A RAS-related protein RAL 99.4 1.1E-12 3.7E-17 122.0 10.7 152 95-268 17-179 (187)
119 2gf0_A GTP-binding protein DI- 99.4 1.6E-12 5.3E-17 122.5 11.7 153 94-268 6-169 (199)
120 3con_A GTPase NRAS; structural 99.4 3.9E-12 1.3E-16 119.1 14.2 150 96-268 21-181 (190)
121 3cbq_A GTP-binding protein REM 99.4 9.5E-13 3.2E-17 124.7 10.1 154 95-268 22-186 (195)
122 2ce2_X GTPase HRAS; signaling 99.4 3.6E-12 1.2E-16 115.5 13.6 149 97-268 4-163 (166)
123 3lvq_E ARF-GAP with SH3 domain 99.4 1.8E-12 6.2E-17 140.7 13.3 150 95-268 321-482 (497)
124 2b6h_A ADP-ribosylation factor 99.4 2.2E-12 7.5E-17 121.7 12.1 150 94-268 27-189 (192)
125 2bov_A RAla, RAS-related prote 99.4 1.9E-12 6.4E-17 122.7 11.7 152 95-268 13-175 (206)
126 1x3s_A RAS-related protein RAB 99.4 2.1E-12 7E-17 121.2 11.6 153 96-270 15-178 (195)
127 3q3j_B RHO-related GTP-binding 99.4 3.5E-12 1.2E-16 122.6 13.2 158 95-269 26-202 (214)
128 2f7s_A C25KG, RAS-related prot 99.4 4.9E-13 1.7E-17 128.3 7.0 151 94-268 23-197 (217)
129 2j1l_A RHO-related GTP-binding 99.4 3.5E-12 1.2E-16 122.5 12.8 156 95-268 33-207 (214)
130 3gj0_A GTP-binding nuclear pro 99.4 9.3E-13 3.2E-17 126.9 8.5 157 94-273 13-178 (221)
131 2j0v_A RAC-like GTP-binding pr 99.4 2.7E-12 9.2E-17 122.6 11.7 157 95-269 8-179 (212)
132 1m7b_A RND3/RHOE small GTP-bin 99.4 5.1E-12 1.8E-16 117.9 13.1 157 95-268 6-181 (184)
133 2xtp_A GTPase IMAP family memb 99.3 9.8E-13 3.4E-17 130.3 7.9 161 95-268 21-206 (260)
134 4dkx_A RAS-related protein RAB 99.3 4E-12 1.4E-16 122.7 11.9 153 96-269 13-175 (216)
135 3c5c_A RAS-like protein 12; GD 99.3 3E-12 1E-16 120.2 10.3 152 94-268 19-184 (187)
136 3lxx_A GTPase IMAP family memb 99.3 2.2E-12 7.4E-17 126.2 9.4 164 95-267 28-211 (239)
137 1gwn_A RHO-related GTP-binding 99.3 7.7E-12 2.6E-16 119.5 13.0 156 95-267 27-201 (205)
138 2g3y_A GTP-binding protein GEM 99.3 4.2E-12 1.4E-16 122.1 10.7 154 95-268 36-201 (211)
139 3lxw_A GTPase IMAP family memb 99.3 1.4E-12 4.8E-17 128.5 7.2 165 94-268 19-206 (247)
140 3r7w_A Gtpase1, GTP-binding pr 99.3 1.8E-12 6.3E-17 131.9 7.7 160 96-268 3-179 (307)
141 2fh5_B SR-beta, signal recogni 99.3 2.8E-12 9.7E-17 122.6 8.6 157 95-267 6-213 (214)
142 3t5d_A Septin-7; GTP-binding p 99.3 6.9E-12 2.4E-16 125.4 11.3 55 384-440 144-198 (274)
143 2cjw_A GTP-binding protein GEM 99.3 6.8E-12 2.3E-16 118.4 10.5 152 96-267 6-169 (192)
144 2yc2_C IFT27, small RAB-relate 99.3 2.3E-12 7.8E-17 122.1 7.2 152 95-267 19-189 (208)
145 3o47_A ADP-ribosylation factor 99.3 3.9E-12 1.3E-16 130.7 8.9 149 95-268 164-325 (329)
146 2aka_B Dynamin-1; fusion prote 99.3 9.9E-13 3.4E-17 132.7 4.0 160 95-267 25-250 (299)
147 3llu_A RAS-related GTP-binding 99.3 7.9E-12 2.7E-16 118.1 9.3 155 95-267 19-194 (196)
148 2j69_A Bacterial dynamin-like 99.3 3.8E-12 1.3E-16 143.2 7.7 161 94-268 67-323 (695)
149 3q72_A GTP-binding protein RAD 99.3 5.9E-12 2E-16 114.8 7.0 157 245-442 3-160 (166)
150 2wkq_A NPH1-1, RAS-related C3 99.3 2.6E-11 9E-16 123.7 12.6 157 94-268 153-328 (332)
151 3izy_P Translation initiation 99.2 6.3E-12 2.2E-16 136.5 7.5 154 95-268 3-166 (537)
152 1jwy_B Dynamin A GTPase domain 99.2 4.4E-12 1.5E-16 129.1 4.9 162 96-269 24-261 (315)
153 3dz8_A RAS-related protein RAB 99.2 2.9E-11 9.8E-16 113.5 10.1 162 244-445 23-185 (191)
154 3th5_A RAS-related C3 botulinu 98.9 1E-12 3.5E-17 124.9 0.0 156 94-267 28-202 (204)
155 1u8z_A RAS-related protein RAL 99.2 1.1E-11 3.8E-16 112.6 6.8 156 245-441 5-162 (168)
156 2www_A Methylmalonic aciduria 99.2 5.8E-12 2E-16 130.5 5.3 150 95-268 73-277 (349)
157 1kao_A RAP2A; GTP-binding prot 99.2 1E-11 3.5E-16 112.8 6.4 156 245-441 4-161 (167)
158 4dkx_A RAS-related protein RAB 99.2 5.4E-12 1.9E-16 121.8 4.4 159 245-443 14-173 (216)
159 3sjy_A Translation initiation 99.2 5.1E-11 1.7E-15 125.9 11.8 157 94-268 6-190 (403)
160 3tr5_A RF-3, peptide chain rel 99.2 3.1E-11 1.1E-15 131.4 9.9 80 96-182 13-116 (528)
161 3dpu_A RAB family protein; roc 99.2 2.4E-11 8.3E-16 133.0 8.8 152 95-270 40-208 (535)
162 2a9k_A RAS-related protein RAL 99.2 2.2E-11 7.5E-16 113.0 6.8 160 244-444 18-179 (187)
163 2zej_A Dardarin, leucine-rich 99.2 1.3E-11 4.6E-16 115.3 5.1 156 97-268 3-176 (184)
164 1t9h_A YLOQ, probable GTPase E 99.2 1.3E-11 4.5E-16 125.0 5.2 130 7-154 88-237 (307)
165 3izq_1 HBS1P, elongation facto 99.2 9.6E-11 3.3E-15 129.8 12.5 156 94-260 165-362 (611)
166 2nzj_A GTP-binding protein REM 99.2 3.5E-11 1.2E-15 110.5 7.6 161 244-444 4-167 (175)
167 1wb1_A Translation elongation 99.2 1.9E-11 6.6E-16 131.9 6.4 154 96-268 19-187 (482)
168 2bov_A RAla, RAS-related prote 99.1 3.3E-11 1.1E-15 114.0 6.6 161 244-445 14-176 (206)
169 1c1y_A RAS-related protein RAP 99.1 1.6E-11 5.3E-16 111.8 4.1 157 245-440 4-161 (167)
170 3q85_A GTP-binding protein REM 99.1 2.2E-11 7.7E-16 111.3 5.2 158 245-442 3-163 (169)
171 2f9l_A RAB11B, member RAS onco 99.1 1.8E-10 6.3E-15 108.9 11.6 152 96-268 5-166 (199)
172 1oix_A RAS-related protein RAB 99.1 2.6E-10 9E-15 107.3 12.4 151 96-267 29-189 (191)
173 3bc1_A RAS-related protein RAB 99.1 4.2E-11 1.4E-15 111.8 6.8 164 244-446 11-185 (195)
174 4dsu_A GTPase KRAS, isoform 2B 99.1 2.7E-11 9.3E-16 112.7 5.4 157 245-444 5-164 (189)
175 4dhe_A Probable GTP-binding pr 99.1 3.4E-12 1.2E-16 122.7 -0.8 163 243-442 28-207 (223)
176 3c5h_A Glucocorticoid receptor 99.1 5.2E-10 1.8E-14 110.5 15.0 161 94-267 17-252 (255)
177 1z08_A RAS-related protein RAB 99.1 3.2E-11 1.1E-15 110.2 5.7 157 244-441 6-164 (170)
178 3iev_A GTP-binding protein ERA 99.1 1.7E-12 5.8E-17 132.2 -3.3 163 245-443 11-179 (308)
179 1pui_A ENGB, probable GTP-bind 99.1 2.8E-11 9.4E-16 115.2 5.4 163 93-268 23-197 (210)
180 1z0f_A RAB14, member RAS oncog 99.1 4.1E-11 1.4E-15 110.4 6.2 156 244-440 15-172 (179)
181 2fn4_A P23, RAS-related protei 99.1 3.3E-11 1.1E-15 111.2 5.3 160 244-445 9-171 (181)
182 2ew1_A RAS-related protein RAB 99.1 4E-11 1.4E-15 114.1 6.1 163 243-447 25-190 (201)
183 3j2k_7 ERF3, eukaryotic polype 99.1 4.8E-11 1.6E-15 127.4 7.3 157 95-262 16-217 (439)
184 3t5g_A GTP-binding protein RHE 99.1 1.4E-11 4.6E-16 114.3 2.4 158 245-443 7-166 (181)
185 1s0u_A EIF-2-gamma, translatio 99.1 1.7E-10 6E-15 121.9 11.2 156 95-268 7-196 (408)
186 3oes_A GTPase rhebl1; small GT 99.1 1.5E-11 5E-16 116.6 2.6 163 243-445 23-186 (201)
187 3gee_A MNME, tRNA modification 99.1 9.3E-12 3.2E-16 133.8 1.3 161 242-445 231-397 (476)
188 3kkq_A RAS-related protein M-R 99.1 2.1E-11 7E-16 113.3 3.3 158 244-442 18-178 (183)
189 2atv_A RERG, RAS-like estrogen 99.1 4.3E-11 1.5E-15 112.8 5.5 160 243-444 27-189 (196)
190 3def_A T7I23.11 protein; chlor 99.1 1.6E-10 5.5E-15 114.7 9.3 88 95-182 35-127 (262)
191 3p26_A Elongation factor 1 alp 99.1 3.7E-11 1.3E-15 129.9 5.0 155 94-259 31-227 (483)
192 2g6b_A RAS-related protein RAB 99.1 6E-11 2E-15 109.6 5.5 158 244-442 10-170 (180)
193 2erx_A GTP-binding protein DI- 99.1 4.1E-11 1.4E-15 109.5 4.3 156 245-439 4-160 (172)
194 1zbd_A Rabphilin-3A; G protein 99.1 8.3E-11 2.8E-15 111.3 6.5 161 244-445 8-170 (203)
195 3pqc_A Probable GTP-binding pr 99.1 1.3E-10 4.4E-15 108.7 7.7 157 244-440 23-188 (195)
196 1zo1_I IF2, translation initia 99.1 5.5E-11 1.9E-15 128.1 5.6 155 95-267 3-164 (501)
197 2hup_A RAS-related protein RAB 99.1 1.2E-10 3.9E-15 110.6 7.2 160 244-445 29-192 (201)
198 3tkl_A RAS-related protein RAB 99.1 5.7E-11 2E-15 111.4 4.9 162 244-447 16-180 (196)
199 3con_A GTPase NRAS; structural 99.1 1.2E-10 4.1E-15 108.9 6.9 157 245-444 22-181 (190)
200 1kk1_A EIF2gamma; initiation o 99.1 7.7E-11 2.6E-15 124.8 6.1 156 95-268 9-198 (410)
201 1r2q_A RAS-related protein RAB 99.1 8.5E-11 2.9E-15 107.1 5.6 154 245-439 7-162 (170)
202 3cbq_A GTP-binding protein REM 99.1 4.8E-11 1.6E-15 112.8 4.0 160 244-443 23-185 (195)
203 2f7s_A C25KG, RAS-related prot 99.1 1.2E-10 3.9E-15 111.6 6.6 163 243-446 24-199 (217)
204 1wf3_A GTP-binding protein; GT 99.1 3.1E-12 1.1E-16 129.8 -4.8 157 245-441 8-168 (301)
205 2bme_A RAB4A, RAS-related prot 99.1 1.1E-10 3.9E-15 108.4 6.2 161 244-446 10-173 (186)
206 2g3y_A GTP-binding protein GEM 99.1 2.2E-10 7.6E-15 110.0 8.3 161 244-444 37-201 (211)
207 1z2a_A RAS-related protein RAB 99.1 7.2E-11 2.5E-15 107.5 4.6 155 244-441 5-162 (168)
208 1svi_A GTP-binding protein YSX 99.1 2.1E-11 7.3E-16 114.4 1.1 159 243-440 22-189 (195)
209 2fg5_A RAB-22B, RAS-related pr 99.1 7.3E-11 2.5E-15 110.9 4.7 156 244-440 23-180 (192)
210 2oil_A CATX-8, RAS-related pro 99.1 8.2E-11 2.8E-15 110.4 4.9 161 243-444 24-186 (193)
211 2il1_A RAB12; G-protein, GDP, 99.1 9.8E-11 3.4E-15 110.1 5.3 159 244-442 26-186 (192)
212 2o52_A RAS-related protein RAB 99.1 1.3E-10 4.4E-15 110.1 6.2 163 243-446 24-188 (200)
213 2gf9_A RAS-related protein RAB 99.1 5.1E-11 1.8E-15 111.5 3.3 160 244-444 22-183 (189)
214 1z0j_A RAB-22, RAS-related pro 99.1 9.9E-11 3.4E-15 106.8 5.1 154 245-439 7-162 (170)
215 3tw8_B RAS-related protein RAB 99.1 5.4E-11 1.9E-15 109.7 3.3 160 244-446 9-171 (181)
216 1h65_A Chloroplast outer envel 99.0 2E-10 6.8E-15 114.5 7.6 88 95-182 38-130 (270)
217 3mca_A HBS1, elongation factor 99.0 3E-11 1E-15 133.5 1.7 163 94-268 175-395 (592)
218 1g7s_A Translation initiation 99.0 3.8E-10 1.3E-14 124.3 10.5 155 95-267 4-215 (594)
219 2c78_A Elongation factor TU-A; 99.0 5.4E-11 1.9E-15 125.7 3.6 157 94-268 9-210 (405)
220 2fu5_C RAS-related protein RAB 99.0 4.7E-11 1.6E-15 110.8 2.7 160 244-445 8-170 (183)
221 3ihw_A Centg3; RAS, centaurin, 99.0 1.4E-10 4.9E-15 108.4 6.0 157 244-444 20-178 (184)
222 3iby_A Ferrous iron transport 99.0 7.1E-11 2.4E-15 116.9 4.1 150 245-441 2-162 (256)
223 2a5j_A RAS-related protein RAB 99.0 9.4E-11 3.2E-15 110.0 4.7 161 244-445 21-183 (191)
224 2efe_B Small GTP-binding prote 99.0 1.1E-10 3.9E-15 107.8 4.9 155 245-440 13-169 (181)
225 3c5c_A RAS-like protein 12; GD 99.0 1.1E-10 3.9E-15 109.2 5.0 157 244-441 21-181 (187)
226 2elf_A Protein translation elo 99.0 1.9E-10 6.4E-15 120.0 7.0 142 98-268 23-178 (370)
227 2x2e_A Dynamin-1; nitration, h 99.0 5.4E-11 1.9E-15 123.4 2.9 156 96-266 31-254 (353)
228 2ce2_X GTPase HRAS; signaling 99.0 9E-11 3.1E-15 106.2 3.9 155 245-441 4-160 (166)
229 3clv_A RAB5 protein, putative; 99.0 2.1E-10 7.3E-15 107.6 6.6 55 384-443 147-201 (208)
230 1z06_A RAS-related protein RAB 99.0 1.4E-10 4.8E-15 108.5 5.4 154 244-436 20-178 (189)
231 1wms_A RAB-9, RAB9, RAS-relate 99.0 1.7E-10 5.8E-15 106.2 5.4 161 244-442 7-170 (177)
232 2ged_A SR-beta, signal recogni 99.0 3.6E-10 1.2E-14 105.8 7.5 80 95-182 47-129 (193)
233 2bcg_Y Protein YP2, GTP-bindin 99.0 1.3E-10 4.5E-15 110.2 4.6 161 244-445 8-170 (206)
234 3p32_A Probable GTPase RV1496/ 99.0 9E-11 3.1E-15 121.8 3.7 152 93-268 76-282 (355)
235 1g16_A RAS-related protein SEC 99.0 8.2E-11 2.8E-15 107.3 3.0 157 245-443 4-162 (170)
236 3reg_A RHO-like small GTPase; 99.0 7.1E-11 2.4E-15 111.0 2.6 160 244-442 23-184 (194)
237 2gf0_A GTP-binding protein DI- 99.0 1.9E-10 6.4E-15 108.1 5.4 157 243-439 7-164 (199)
238 1ek0_A Protein (GTP-binding pr 99.0 1.5E-10 5.1E-15 105.4 4.6 153 245-438 4-161 (170)
239 3geh_A MNME, tRNA modification 99.0 3.4E-11 1.2E-15 128.9 0.3 159 242-444 222-382 (462)
240 2iwr_A Centaurin gamma 1; ANK 99.0 1.9E-10 6.5E-15 106.2 5.1 159 244-444 7-167 (178)
241 1ky3_A GTP-binding protein YPT 99.0 5.3E-10 1.8E-14 103.1 8.0 166 244-445 8-177 (182)
242 4bas_A ADP-ribosylation factor 99.0 6.8E-11 2.3E-15 111.2 1.8 59 243-303 16-74 (199)
243 1x3s_A RAS-related protein RAB 99.0 1.1E-10 3.9E-15 109.1 3.3 159 244-443 15-175 (195)
244 2cxx_A Probable GTP-binding pr 99.0 5.7E-10 2E-14 103.8 7.9 164 245-444 2-182 (190)
245 3cph_A RAS-related protein SEC 99.0 2E-10 6.7E-15 109.3 4.8 159 243-443 19-179 (213)
246 2p5s_A RAS and EF-hand domain 99.0 1.9E-10 6.5E-15 108.7 4.1 159 243-440 27-191 (199)
247 2y8e_A RAB-protein 6, GH09086P 99.0 2.1E-10 7.3E-15 105.5 4.3 153 245-439 15-170 (179)
248 2j1l_A RHO-related GTP-binding 99.0 4.3E-10 1.5E-14 107.7 6.4 160 244-444 34-207 (214)
249 1f6b_A SAR1; gtpases, N-termin 99.0 1.4E-10 4.6E-15 109.9 2.6 153 243-438 24-191 (198)
250 3bwd_D RAC-like GTP-binding pr 99.0 2E-10 6.9E-15 106.2 3.7 153 244-440 8-175 (182)
251 4djt_A GTP-binding nuclear pro 99.0 9.3E-11 3.2E-15 112.3 1.4 158 244-442 11-171 (218)
252 2yc2_C IFT27, small RAB-relate 99.0 3.7E-10 1.3E-14 106.8 5.4 162 244-446 20-192 (208)
253 2qpt_A EH domain-containing pr 99.0 3.5E-10 1.2E-14 123.8 5.7 88 95-182 64-199 (550)
254 1f60_A Elongation factor EEF1A 99.0 3.4E-10 1.2E-14 121.4 5.4 150 96-258 7-200 (458)
255 2hxs_A RAB-26, RAS-related pro 99.0 2.3E-10 8E-15 105.3 3.6 157 244-441 6-168 (178)
256 2qm8_A GTPase/ATPase; G protei 99.0 3.9E-10 1.3E-14 116.1 5.5 152 93-267 52-258 (337)
257 1ega_A Protein (GTP-binding pr 99.0 7.4E-11 2.5E-15 119.6 0.1 159 245-441 9-170 (301)
258 3cpj_B GTP-binding protein YPT 99.0 2E-10 6.7E-15 110.8 3.1 159 244-443 13-173 (223)
259 1ksh_A ARF-like protein 2; sma 98.9 2.9E-10 9.7E-15 105.9 3.9 156 243-441 17-175 (186)
260 2ywe_A GTP-binding protein LEP 98.9 1.1E-09 3.8E-14 120.5 9.1 151 97-270 7-184 (600)
261 1zd9_A ADP-ribosylation factor 98.9 2.3E-10 7.7E-15 107.1 2.9 155 244-440 22-179 (188)
262 3th5_A RAS-related C3 botulinu 98.5 8.8E-11 3E-15 111.4 0.0 158 243-441 29-200 (204)
263 3b1v_A Ferrous iron uptake tra 98.9 4.9E-10 1.7E-14 111.8 5.3 151 244-442 3-160 (272)
264 2cjw_A GTP-binding protein GEM 98.9 5.8E-10 2E-14 105.1 5.5 161 245-445 7-171 (192)
265 1d2e_A Elongation factor TU (E 98.9 3.3E-10 1.1E-14 119.3 4.2 155 96-268 3-193 (397)
266 3t1o_A Gliding protein MGLA; G 98.9 3.5E-10 1.2E-14 105.8 4.0 160 244-446 14-192 (198)
267 1zj6_A ADP-ribosylation factor 98.9 4.9E-10 1.7E-14 104.6 4.9 156 243-441 15-173 (187)
268 3zvr_A Dynamin-1; hydrolase, D 98.9 1.2E-10 4.3E-15 130.4 0.9 158 96-267 51-275 (772)
269 1mh1_A RAC1; GTP-binding, GTPa 98.9 3.6E-10 1.2E-14 104.7 3.8 59 245-303 6-64 (186)
270 3q3j_B RHO-related GTP-binding 98.9 2.8E-10 9.6E-15 109.2 3.0 160 244-443 27-200 (214)
271 3t34_A Dynamin-related protein 98.9 7.5E-10 2.6E-14 115.0 6.3 24 97-120 35-58 (360)
272 2gco_A H9, RHO-related GTP-bin 98.9 3.9E-10 1.3E-14 106.8 3.8 57 244-302 25-83 (201)
273 3i8s_A Ferrous iron transport 98.9 3.9E-10 1.3E-14 112.8 3.8 149 245-440 4-163 (274)
274 2wji_A Ferrous iron transport 98.9 1E-09 3.5E-14 100.5 6.3 56 245-303 4-61 (165)
275 1zun_B Sulfate adenylate trans 98.9 4E-10 1.4E-14 120.1 4.0 146 96-259 24-213 (434)
276 1jny_A EF-1-alpha, elongation 98.9 1.7E-09 6E-14 115.2 8.7 152 96-258 6-201 (435)
277 2h57_A ADP-ribosylation factor 98.9 3.5E-10 1.2E-14 105.8 2.7 157 243-440 20-181 (190)
278 1r8s_A ADP-ribosylation factor 98.9 8E-10 2.8E-14 100.3 5.0 152 246-440 2-156 (164)
279 2p67_A LAO/AO transport system 98.9 8.2E-10 2.8E-14 113.9 5.6 153 93-268 53-259 (341)
280 3cb4_D GTP-binding protein LEP 98.9 2.1E-09 7E-14 118.5 9.0 151 97-270 5-182 (599)
281 1m2o_B GTP-binding protein SAR 98.9 3.6E-10 1.2E-14 106.1 2.4 56 244-303 23-78 (190)
282 1fzq_A ADP-ribosylation factor 98.9 6.9E-10 2.4E-14 103.3 4.1 155 243-440 15-172 (181)
283 2atx_A Small GTP binding prote 98.9 5.1E-10 1.7E-14 105.0 3.0 155 245-441 19-188 (194)
284 2fv8_A H6, RHO-related GTP-bin 98.9 6.5E-10 2.2E-14 105.7 3.8 57 244-302 25-83 (207)
285 1m7b_A RND3/RHOE small GTP-bin 98.9 5.2E-10 1.8E-14 104.2 3.0 158 244-441 7-178 (184)
286 1vg8_A RAS-related protein RAB 98.9 5.4E-10 1.8E-14 105.7 3.0 162 244-446 8-175 (207)
287 2q3h_A RAS homolog gene family 98.9 4.6E-10 1.6E-14 105.9 2.5 162 243-445 19-194 (201)
288 2j0v_A RAC-like GTP-binding pr 98.9 4.1E-10 1.4E-14 107.3 1.8 157 244-444 9-178 (212)
289 4gzl_A RAS-related C3 botulinu 98.9 5.1E-10 1.8E-14 106.3 2.2 58 243-303 29-89 (204)
290 1nrj_B SR-beta, signal recogni 98.9 3.3E-09 1.1E-13 101.4 7.9 80 94-182 10-93 (218)
291 1xzp_A Probable tRNA modificat 98.9 7.8E-12 2.7E-16 134.5 -11.8 160 243-445 242-404 (482)
292 2rcn_A Probable GTPase ENGC; Y 98.9 1.2E-09 4.1E-14 112.7 5.0 125 12-153 136-280 (358)
293 3avx_A Elongation factor TS, e 98.9 2.1E-09 7.2E-14 124.1 7.4 157 94-268 294-484 (1289)
294 1gwn_A RHO-related GTP-binding 98.9 7.7E-10 2.6E-14 105.5 3.2 160 243-442 27-200 (205)
295 2h5e_A Peptide chain release f 98.8 8.8E-09 3E-13 112.2 11.6 81 96-183 13-117 (529)
296 1upt_A ARL1, ADP-ribosylation 98.8 4.6E-10 1.6E-14 102.5 0.7 57 243-303 6-62 (171)
297 2h17_A ADP-ribosylation factor 98.8 4.9E-10 1.7E-14 104.0 0.8 57 243-303 20-76 (181)
298 2qu8_A Putative nucleolar GTP- 98.8 3.2E-10 1.1E-14 109.7 -0.5 162 243-446 28-205 (228)
299 2xex_A Elongation factor G; GT 98.8 6.2E-09 2.1E-13 117.1 9.3 81 96-183 10-110 (693)
300 3a1s_A Iron(II) transport prot 98.8 9.2E-10 3.1E-14 109.0 2.2 152 245-443 6-164 (258)
301 1moz_A ARL1, ADP-ribosylation 98.8 6.5E-10 2.2E-14 102.9 1.0 158 243-443 17-177 (183)
302 2b6h_A ADP-ribosylation factor 98.8 1.2E-09 4.1E-14 102.8 2.7 155 243-440 28-185 (192)
303 2gj8_A MNME, tRNA modification 98.8 1.6E-11 5.3E-16 113.7 -10.3 58 244-303 4-63 (172)
304 1lnz_A SPO0B-associated GTP-bi 98.8 1.7E-09 5.7E-14 111.5 3.8 59 244-304 158-218 (342)
305 2lkc_A Translation initiation 98.8 1.1E-09 3.9E-14 100.7 1.7 153 243-442 7-167 (178)
306 3gj0_A GTP-binding nuclear pro 98.8 7E-10 2.4E-14 106.6 -0.5 154 244-441 15-170 (221)
307 1dar_A EF-G, elongation factor 98.8 1.3E-08 4.6E-13 114.3 9.6 81 96-183 12-112 (691)
308 3k53_A Ferrous iron transport 98.7 1.4E-10 4.9E-15 115.6 -6.2 153 245-444 4-164 (271)
309 2wkq_A NPH1-1, RAS-related C3 98.7 5.1E-09 1.7E-13 106.6 4.5 160 241-441 152-325 (332)
310 2wjg_A FEOB, ferrous iron tran 98.7 4.9E-09 1.7E-13 97.5 3.8 56 245-303 8-65 (188)
311 1yrb_A ATP(GTP)binding protein 98.7 2.1E-08 7.3E-13 98.7 8.3 165 95-268 13-255 (262)
312 2fh5_B SR-beta, signal recogni 98.7 1.4E-08 4.7E-13 96.7 6.8 67 244-314 7-76 (214)
313 1r5b_A Eukaryotic peptide chai 98.7 3.1E-09 1E-13 114.3 2.3 154 94-260 41-242 (467)
314 2wsm_A Hydrogenase expression/ 98.7 1.8E-08 6.1E-13 96.6 7.4 148 95-268 29-212 (221)
315 3l0i_B RAS-related protein RAB 98.7 2.2E-11 7.4E-16 115.2 -13.1 155 244-439 33-189 (199)
316 3lvq_E ARF-GAP with SH3 domain 98.7 4.3E-09 1.5E-13 114.0 2.0 157 243-442 321-480 (497)
317 2x77_A ADP-ribosylation factor 98.7 4.6E-10 1.6E-14 104.8 -5.2 56 243-302 21-76 (189)
318 3r7w_B Gtpase2, GTP-binding pr 98.6 4.9E-08 1.7E-12 99.2 8.9 154 98-268 1-172 (331)
319 3o47_A ADP-ribosylation factor 98.6 5.6E-09 1.9E-13 107.1 1.7 154 244-441 165-322 (329)
320 2dyk_A GTP-binding protein; GT 98.6 7.7E-09 2.6E-13 93.3 2.2 57 245-303 2-60 (161)
321 2rdo_7 EF-G, elongation factor 98.6 1E-07 3.5E-12 107.3 11.8 82 95-183 9-117 (704)
322 3llu_A RAS-related GTP-binding 98.6 1.2E-08 3.9E-13 96.1 2.7 59 243-302 19-79 (196)
323 2zej_A Dardarin, leucine-rich 98.6 1.7E-08 6E-13 93.9 3.9 23 245-267 3-25 (184)
324 2qtf_A Protein HFLX, GTP-bindi 98.6 2.8E-08 9.6E-13 103.2 5.6 56 245-302 180-236 (364)
325 2yv5_A YJEQ protein; hydrolase 98.6 3.3E-08 1.1E-12 100.1 6.0 130 6-153 80-228 (302)
326 1udx_A The GTP-binding protein 98.6 6.7E-09 2.3E-13 109.5 0.5 242 241-547 154-405 (416)
327 3dpu_A RAB family protein; roc 98.6 1.6E-08 5.6E-13 110.5 3.4 154 244-442 41-204 (535)
328 3lxw_A GTPase IMAP family memb 98.6 2.9E-08 9.9E-13 97.5 4.1 60 243-302 20-80 (247)
329 2dy1_A Elongation factor G; tr 98.6 1.8E-07 6.3E-12 104.7 11.0 81 95-182 8-108 (665)
330 3r7w_A Gtpase1, GTP-binding pr 98.5 4E-08 1.4E-12 99.7 5.0 60 244-305 3-65 (307)
331 2e87_A Hypothetical protein PH 98.5 4.1E-08 1.4E-12 101.8 5.2 163 242-444 165-334 (357)
332 1f5n_A Interferon-induced guan 98.5 6.7E-08 2.3E-12 105.9 6.8 61 94-155 36-105 (592)
333 2qag_A Septin-2, protein NEDD5 98.5 2.4E-08 8.2E-13 103.7 2.7 27 94-120 35-61 (361)
334 2aka_B Dynamin-1; fusion prote 98.5 1.8E-08 6.1E-13 101.3 1.3 27 243-269 25-51 (299)
335 1wb1_A Translation elongation 98.5 1.3E-08 4.3E-13 109.8 -0.1 157 244-440 19-183 (482)
336 2f9l_A RAB11B, member RAS onco 98.5 6.7E-08 2.3E-12 91.0 4.7 158 245-444 6-166 (199)
337 3sjy_A Translation initiation 98.5 8.6E-08 2.9E-12 101.0 5.8 58 383-440 128-186 (403)
338 1u0l_A Probable GTPase ENGC; p 98.5 1.7E-07 5.9E-12 94.7 7.5 131 6-154 85-234 (301)
339 3lxx_A GTPase IMAP family memb 98.5 1.2E-07 4E-12 92.3 5.8 61 243-303 28-89 (239)
340 3p32_A Probable GTPase RV1496/ 98.5 8.4E-09 2.9E-13 106.9 -2.6 60 384-443 217-281 (355)
341 3j2k_7 ERF3, eukaryotic polype 98.5 6.1E-08 2.1E-12 103.3 3.9 55 384-438 154-217 (439)
342 3izy_P Translation initiation 98.5 5.7E-09 1.9E-13 113.3 -4.4 154 243-440 3-162 (537)
343 3vqt_A RF-3, peptide chain rel 98.4 6.8E-07 2.3E-11 97.7 11.5 79 97-182 32-134 (548)
344 3p26_A Elongation factor 1 alp 98.4 1.1E-07 3.8E-12 102.5 4.6 27 241-267 30-56 (483)
345 1s0u_A EIF-2-gamma, translatio 98.4 4.5E-08 1.5E-12 103.4 1.4 56 384-439 135-191 (408)
346 3h2y_A GTPase family protein; 98.4 3.8E-08 1.3E-12 102.4 0.8 59 243-302 159-221 (368)
347 1kk1_A EIF2gamma; initiation o 98.4 4.2E-08 1.4E-12 103.7 1.0 56 384-439 137-193 (410)
348 1pui_A ENGB, probable GTP-bind 98.4 1.5E-07 5.2E-12 89.1 4.0 59 242-302 24-82 (210)
349 1jwy_B Dynamin A GTPase domain 98.4 3.9E-08 1.3E-12 99.7 -0.3 27 243-269 23-49 (315)
350 3qq5_A Small GTP-binding prote 98.4 2.1E-08 7.3E-13 105.9 -2.3 158 244-444 34-194 (423)
351 2xtp_A GTPase IMAP family memb 98.4 3.6E-07 1.2E-11 90.0 6.7 61 243-303 21-82 (260)
352 1puj_A YLQF, conserved hypothe 98.3 1.6E-07 5.5E-12 94.1 3.1 58 243-303 119-176 (282)
353 3c5h_A Glucocorticoid receptor 98.3 1E-07 3.6E-12 93.9 1.4 53 383-440 197-249 (255)
354 3izq_1 HBS1P, elongation facto 98.3 2.3E-07 7.7E-12 102.8 4.2 27 242-268 165-191 (611)
355 2www_A Methylmalonic aciduria 98.3 4.1E-08 1.4E-12 101.5 -1.7 25 243-267 73-97 (349)
356 1nrj_B SR-beta, signal recogni 98.3 1E-07 3.6E-12 90.8 1.2 57 243-304 11-67 (218)
357 2x2e_A Dynamin-1; nitration, h 98.3 2E-07 6.9E-12 96.4 3.0 27 243-269 30-56 (353)
358 2j69_A Bacterial dynamin-like 98.3 9E-08 3.1E-12 107.6 0.3 28 241-268 66-93 (695)
359 1oix_A RAS-related protein RAB 98.3 2.1E-07 7E-12 87.3 2.7 153 245-439 30-185 (191)
360 1zun_B Sulfate adenylate trans 98.3 4.7E-07 1.6E-11 96.3 5.7 53 384-438 157-216 (434)
361 1n0u_A EF-2, elongation factor 98.2 5E-07 1.7E-11 103.7 4.5 81 96-183 19-133 (842)
362 2j37_W Signal recognition part 98.2 1.1E-07 3.7E-12 102.5 -1.1 157 95-267 100-310 (504)
363 2hf9_A Probable hydrogenase ni 98.2 1.8E-06 6.3E-11 82.6 7.4 51 214-267 170-221 (226)
364 3cnl_A YLQF, putative uncharac 98.2 2.9E-07 1E-11 91.1 1.1 120 163-303 13-155 (262)
365 1jny_A EF-1-alpha, elongation 98.2 7.2E-07 2.5E-11 94.9 4.2 54 385-438 145-205 (435)
366 2elf_A Protein translation elo 98.2 1.4E-07 4.7E-12 98.2 -1.9 144 246-441 23-175 (370)
367 3j25_A Tetracycline resistance 98.2 2.3E-06 7.8E-11 95.3 7.5 78 98-182 4-101 (638)
368 3zvr_A Dynamin-1; hydrolase, D 98.1 7.5E-08 2.6E-12 108.0 -4.7 71 369-443 202-275 (772)
369 2c78_A Elongation factor TU-A; 98.1 1.5E-07 5.3E-12 99.1 -2.1 25 243-267 10-34 (405)
370 1zo1_I IF2, translation initia 98.1 2.8E-08 9.7E-13 107.0 -7.8 57 243-302 3-61 (501)
371 4a9a_A Ribosome-interacting GT 98.1 7.3E-07 2.5E-11 92.5 2.5 58 245-304 73-131 (376)
372 3tr5_A RF-3, peptide chain rel 98.1 1E-07 3.5E-12 103.7 -4.7 23 244-266 13-35 (528)
373 2qnr_A Septin-2, protein NEDD5 98.1 6.8E-07 2.3E-11 90.3 1.5 158 95-268 17-212 (301)
374 3ec1_A YQEH GTPase; atnos1, at 98.1 1.7E-06 5.9E-11 89.9 4.5 59 243-302 161-222 (369)
375 2qag_A Septin-2, protein NEDD5 98.1 1.5E-06 5E-11 90.2 3.9 69 368-441 160-228 (361)
376 1d2e_A Elongation factor TU (E 98.1 5.4E-07 1.8E-11 94.7 0.0 24 244-267 3-26 (397)
377 1f60_A Elongation factor EEF1A 98.0 1.1E-06 3.8E-11 94.1 2.1 55 384-438 144-204 (458)
378 3mca_A HBS1, elongation factor 98.0 3.2E-07 1.1E-11 101.3 -2.2 25 243-267 176-200 (592)
379 2qag_C Septin-7; cell cycle, c 98.0 2.7E-06 9.2E-11 89.7 4.9 61 94-154 29-101 (418)
380 2ged_A SR-beta, signal recogni 98.0 2.1E-06 7.1E-11 79.9 3.3 56 243-303 47-102 (193)
381 2p67_A LAO/AO transport system 98.0 1.7E-06 5.7E-11 89.0 2.7 33 236-268 48-80 (341)
382 1g7s_A Translation initiation 98.0 1.5E-06 5.3E-11 95.6 1.6 28 243-270 4-31 (594)
383 3t34_A Dynamin-related protein 97.9 2E-05 6.7E-10 81.5 9.1 61 373-438 193-253 (360)
384 2wsm_A Hydrogenase expression/ 97.9 7.4E-07 2.5E-11 85.1 -2.6 56 384-441 154-209 (221)
385 2qm8_A GTPase/ATPase; G protei 97.9 8.2E-07 2.8E-11 91.2 -2.9 35 234-268 45-79 (337)
386 1tq4_A IIGP1, interferon-induc 97.8 7E-05 2.4E-09 78.6 11.5 158 95-270 68-253 (413)
387 1r5b_A Eukaryotic peptide chai 97.8 5.7E-06 1.9E-10 88.7 3.2 56 383-438 179-244 (467)
388 2qnr_A Septin-2, protein NEDD5 97.8 2.1E-06 7.1E-11 86.8 -0.4 68 368-442 141-210 (301)
389 2ywe_A GTP-binding protein LEP 97.8 7.9E-07 2.7E-11 97.8 -3.9 55 383-440 124-178 (600)
390 3cb4_D GTP-binding protein LEP 97.8 6.9E-07 2.4E-11 98.4 -4.5 55 383-440 122-176 (599)
391 3r7w_B Gtpase2, GTP-binding pr 97.8 1.4E-06 4.7E-11 88.6 -2.8 57 246-304 1-58 (331)
392 3avx_A Elongation factor TS, e 97.8 3.4E-06 1.1E-10 97.8 -0.3 24 244-267 296-319 (1289)
393 3q5d_A Atlastin-1; G protein, 97.8 1.5E-05 5.2E-10 84.4 4.7 59 97-155 68-154 (447)
394 1h65_A Chloroplast outer envel 97.7 6.5E-05 2.2E-09 74.3 7.7 59 243-303 38-98 (270)
395 3hvz_A Uncharacterized protein 97.7 6.9E-06 2.3E-10 65.2 0.3 60 468-549 8-67 (78)
396 4fn5_A EF-G 1, elongation fact 97.6 0.00011 3.9E-09 82.7 9.2 79 97-182 14-119 (709)
397 3def_A T7I23.11 protein; chlor 97.6 9.3E-05 3.2E-09 72.8 7.3 59 243-303 35-95 (262)
398 2qpt_A EH domain-containing pr 97.6 5.5E-05 1.9E-09 82.6 5.8 28 243-270 64-91 (550)
399 2qag_C Septin-7; cell cycle, c 97.5 0.00014 4.8E-09 76.6 8.1 66 368-437 153-218 (418)
400 2hf9_A Probable hydrogenase ni 97.5 6.6E-06 2.2E-10 78.7 -2.1 56 384-441 164-219 (226)
401 2qag_B Septin-6, protein NEDD5 97.5 0.00013 4.4E-09 76.7 7.4 57 97-153 43-107 (427)
402 2v3c_C SRP54, signal recogniti 97.4 0.00014 4.9E-09 76.9 6.6 84 96-182 99-221 (432)
403 2xex_A Elongation factor G; GT 97.4 5.7E-06 2E-10 93.0 -4.6 24 244-267 10-33 (693)
404 2dy1_A Elongation factor G; tr 97.4 1.3E-05 4.4E-10 89.7 -1.9 26 243-268 8-33 (665)
405 2h5e_A Peptide chain release f 97.4 1.4E-05 4.8E-10 86.9 -1.9 25 243-267 12-36 (529)
406 3dm5_A SRP54, signal recogniti 97.3 0.00022 7.6E-09 75.3 6.1 23 95-117 99-121 (443)
407 1yrb_A ATP(GTP)binding protein 97.3 0.00049 1.7E-08 67.1 7.8 25 243-267 13-37 (262)
408 3sop_A Neuronal-specific septi 97.2 0.00022 7.5E-09 70.6 4.6 24 97-120 3-26 (270)
409 1dar_A EF-G, elongation factor 97.0 4.5E-05 1.5E-09 85.7 -2.5 24 244-267 12-35 (691)
410 3kl4_A SRP54, signal recogniti 97.0 0.00041 1.4E-08 73.2 4.9 23 95-117 96-118 (433)
411 2ohf_A Protein OLA1, GTP-bindi 97.0 2.2E-05 7.6E-10 81.8 -5.3 67 237-305 15-99 (396)
412 2rdo_7 EF-G, elongation factor 96.9 0.00021 7.1E-09 80.4 1.7 24 244-267 10-33 (704)
413 3ney_A 55 kDa erythrocyte memb 96.8 0.00037 1.3E-08 65.6 2.1 57 96-152 19-77 (197)
414 1tq4_A IIGP1, interferon-induc 96.8 0.00087 3E-08 70.3 4.7 27 242-268 67-93 (413)
415 2qag_B Septin-6, protein NEDD5 96.7 7.5E-05 2.6E-09 78.5 -3.7 36 234-269 30-67 (427)
416 2yv5_A YJEQ protein; hydrolase 96.7 0.0041 1.4E-07 62.4 8.6 91 167-268 75-188 (302)
417 1cip_A Protein (guanine nucleo 96.6 0.00032 1.1E-08 72.2 -0.0 24 94-117 30-53 (353)
418 1n0u_A EF-2, elongation factor 96.5 0.00084 2.9E-08 77.0 2.1 25 243-267 18-42 (842)
419 3szr_A Interferon-induced GTP- 96.4 0.0013 4.4E-08 72.7 3.1 23 98-120 47-69 (608)
420 1jal_A YCHF protein; nucleotid 96.4 0.00086 2.9E-08 69.1 1.4 59 244-304 2-78 (363)
421 1u0l_A Probable GTPase ENGC; p 96.3 0.0079 2.7E-07 60.2 8.3 109 141-268 63-193 (301)
422 2rcn_A Probable GTPase ENGC; Y 96.2 0.0076 2.6E-07 61.8 7.2 61 243-304 214-280 (358)
423 1vma_A Cell division protein F 96.1 0.0047 1.6E-07 62.1 5.3 24 95-118 103-126 (306)
424 1zcb_A G alpha I/13; GTP-bindi 96.1 0.0013 4.5E-08 67.8 1.0 24 94-117 31-54 (362)
425 1wxq_A GTP-binding protein; st 96.1 0.0013 4.4E-08 68.8 0.9 57 246-304 2-83 (397)
426 1kgd_A CASK, peripheral plasma 96.1 0.0034 1.2E-07 57.7 3.7 39 96-134 5-45 (180)
427 1ni3_A YCHF GTPase, YCHF GTP-b 96.0 0.002 7E-08 67.0 2.2 64 238-303 14-96 (392)
428 1j8m_F SRP54, signal recogniti 96.0 0.0058 2E-07 61.2 5.4 23 96-118 98-120 (297)
429 2yhs_A FTSY, cell division pro 95.9 0.0056 1.9E-07 65.3 5.1 25 94-118 291-315 (503)
430 3e70_C DPA, signal recognition 95.9 0.0072 2.4E-07 61.4 5.4 26 94-119 127-152 (328)
431 1cip_A Protein (guanine nucleo 95.8 0.0064 2.2E-07 62.4 4.9 121 140-267 192-341 (353)
432 3ohm_A Guanine nucleotide-bind 95.8 0.0022 7.5E-08 65.1 1.1 24 94-117 5-28 (327)
433 2dby_A GTP-binding protein; GD 95.7 0.0018 6.1E-08 66.9 0.2 32 245-276 2-33 (368)
434 2xtz_A Guanine nucleotide-bind 95.7 0.0014 4.7E-08 67.4 -0.7 23 95-117 8-30 (354)
435 3tau_A Guanylate kinase, GMP k 95.7 0.0079 2.7E-07 56.6 4.5 41 95-135 7-49 (208)
436 1ye8_A Protein THEP1, hypothet 95.6 0.0049 1.7E-07 56.8 2.8 24 97-120 1-24 (178)
437 3l82_B F-box only protein 4; T 95.6 0.0074 2.5E-07 57.0 4.0 96 161-268 115-221 (227)
438 1lvg_A Guanylate kinase, GMP k 95.6 0.0044 1.5E-07 58.0 2.5 24 96-119 4-27 (198)
439 2px0_A Flagellar biosynthesis 95.5 0.0087 3E-07 59.9 4.4 24 95-118 104-127 (296)
440 1f5n_A Interferon-induced guan 95.5 0.0047 1.6E-07 67.6 2.3 58 242-303 36-102 (592)
441 2qor_A Guanylate kinase; phosp 95.4 0.0072 2.5E-07 56.6 3.2 41 95-135 11-53 (204)
442 2xxa_A Signal recognition part 95.4 0.015 5.1E-07 61.3 5.9 23 95-117 99-121 (433)
443 1ex7_A Guanylate kinase; subst 95.4 0.0077 2.6E-07 56.0 3.0 49 99-147 4-54 (186)
444 1zcb_A G alpha I/13; GTP-bindi 95.3 0.012 4.1E-07 60.5 4.7 120 140-267 200-350 (362)
445 1zp6_A Hypothetical protein AT 95.3 0.011 3.8E-07 54.3 3.8 25 95-119 8-32 (191)
446 3j25_A Tetracycline resistance 95.3 0.0048 1.7E-07 68.5 1.6 22 246-267 4-25 (638)
447 3a00_A Guanylate kinase, GMP k 95.2 0.0082 2.8E-07 55.4 2.7 23 98-120 3-25 (186)
448 4fid_A G protein alpha subunit 95.1 0.0061 2.1E-07 62.1 1.6 23 95-117 4-26 (340)
449 3t5d_A Septin-7; GTP-binding p 95.0 0.0047 1.6E-07 60.9 0.6 59 244-302 8-75 (274)
450 3l2o_B F-box only protein 4; s 95.0 0.035 1.2E-06 54.9 6.6 94 163-268 202-306 (312)
451 1azs_C GS-alpha; complex (lyas 95.0 0.0051 1.7E-07 64.2 0.6 24 94-117 38-61 (402)
452 1s96_A Guanylate kinase, GMP k 94.8 0.016 5.5E-07 55.2 3.6 27 94-120 14-40 (219)
453 2ffh_A Protein (FFH); SRP54, s 94.8 0.025 8.6E-07 59.4 5.4 24 95-118 97-120 (425)
454 3vqt_A RF-3, peptide chain rel 94.7 0.019 6.6E-07 62.4 4.5 22 245-266 32-53 (548)
455 3tr0_A Guanylate kinase, GMP k 94.7 0.015 5.2E-07 54.0 3.2 24 96-119 7-30 (205)
456 3c8u_A Fructokinase; YP_612366 94.7 0.014 4.9E-07 54.8 3.0 27 94-120 20-46 (208)
457 2xtz_A Guanine nucleotide-bind 94.6 0.03 1E-06 57.3 5.3 37 140-183 182-218 (354)
458 4ido_A Atlastin-1; GTPase, GTP 94.5 0.038 1.3E-06 58.2 5.9 21 97-117 68-88 (457)
459 1ls1_A Signal recognition part 94.5 0.029 1E-06 55.9 4.9 24 95-118 97-120 (295)
460 1znw_A Guanylate kinase, GMP k 94.5 0.019 6.3E-07 53.9 3.1 26 95-120 19-44 (207)
461 3asz_A Uridine kinase; cytidin 94.4 0.022 7.5E-07 53.3 3.4 25 95-119 5-29 (211)
462 1kag_A SKI, shikimate kinase I 94.3 0.018 6.2E-07 51.9 2.6 23 97-119 5-27 (173)
463 2j41_A Guanylate kinase; GMP, 94.3 0.022 7.4E-07 52.9 3.2 26 95-120 5-30 (207)
464 1z6g_A Guanylate kinase; struc 94.3 0.019 6.4E-07 54.5 2.6 26 95-120 22-47 (218)
465 3lnc_A Guanylate kinase, GMP k 94.1 0.026 8.8E-07 53.8 3.3 26 95-120 26-52 (231)
466 4eun_A Thermoresistant glucoki 94.1 0.025 8.6E-07 52.6 3.1 25 95-119 28-52 (200)
467 2j37_W Signal recognition part 94.0 0.014 4.9E-07 62.6 1.4 23 244-266 101-123 (504)
468 2pcj_A ABC transporter, lipopr 94.0 0.031 1.1E-06 53.3 3.6 26 95-120 29-54 (224)
469 2bbw_A Adenylate kinase 4, AK4 94.0 0.028 9.7E-07 54.1 3.3 23 95-117 26-48 (246)
470 3tif_A Uncharacterized ABC tra 93.9 0.031 1.1E-06 53.8 3.3 26 95-120 30-55 (235)
471 2bdt_A BH3686; alpha-beta prot 93.8 0.026 9E-07 51.8 2.5 21 98-118 4-24 (189)
472 1knq_A Gluconate kinase; ALFA/ 93.7 0.035 1.2E-06 50.2 3.3 24 96-119 8-31 (175)
473 2v9p_A Replication protein E1; 93.7 0.033 1.1E-06 55.8 3.3 27 93-119 123-149 (305)
474 4gp7_A Metallophosphoesterase; 93.7 0.027 9.3E-07 51.1 2.5 22 96-117 9-30 (171)
475 2if2_A Dephospho-COA kinase; a 93.7 0.034 1.2E-06 51.7 3.2 22 97-118 2-23 (204)
476 2qt1_A Nicotinamide riboside k 93.7 0.046 1.6E-06 50.9 4.1 27 93-119 18-44 (207)
477 2onk_A Molybdate/tungstate ABC 93.7 0.029 9.9E-07 54.2 2.7 24 97-120 25-48 (240)
478 2cbz_A Multidrug resistance-as 93.7 0.035 1.2E-06 53.4 3.3 26 95-120 30-55 (237)
479 1cke_A CK, MSSA, protein (cyti 93.5 0.034 1.2E-06 52.5 3.0 24 96-119 5-28 (227)
480 1mv5_A LMRA, multidrug resista 93.5 0.037 1.3E-06 53.5 3.2 27 94-120 26-52 (243)
481 3sop_A Neuronal-specific septi 93.5 0.13 4.5E-06 50.5 7.2 26 245-270 3-28 (270)
482 1sgw_A Putative ABC transporte 93.5 0.031 1.1E-06 53.0 2.6 25 96-120 35-59 (214)
483 1b0u_A Histidine permease; ABC 93.4 0.04 1.4E-06 54.0 3.3 26 95-120 31-56 (262)
484 3uie_A Adenylyl-sulfate kinase 93.4 0.038 1.3E-06 51.3 3.1 25 95-119 24-48 (200)
485 1g6h_A High-affinity branched- 93.4 0.039 1.3E-06 53.8 3.2 26 95-120 32-57 (257)
486 2ff7_A Alpha-hemolysin translo 93.4 0.04 1.4E-06 53.4 3.2 26 95-120 34-59 (247)
487 2i3b_A HCR-ntpase, human cance 93.3 0.032 1.1E-06 51.8 2.3 23 98-120 3-25 (189)
488 1ly1_A Polynucleotide kinase; 93.3 0.043 1.5E-06 49.5 3.1 22 97-118 3-24 (181)
489 2pze_A Cystic fibrosis transme 93.3 0.042 1.4E-06 52.6 3.2 26 95-120 33-58 (229)
490 3gfo_A Cobalt import ATP-bindi 93.3 0.041 1.4E-06 54.3 3.2 26 95-120 33-58 (275)
491 2ghi_A Transport protein; mult 93.3 0.044 1.5E-06 53.6 3.3 27 94-120 44-70 (260)
492 2olj_A Amino acid ABC transpor 93.3 0.044 1.5E-06 53.7 3.3 26 95-120 49-74 (263)
493 3lw7_A Adenylate kinase relate 93.3 0.041 1.4E-06 49.2 2.8 20 97-116 2-21 (179)
494 4g1u_C Hemin import ATP-bindin 93.2 0.042 1.4E-06 53.9 3.2 26 95-120 36-61 (266)
495 3ohm_A Guanine nucleotide-bind 93.2 0.062 2.1E-06 54.3 4.4 76 140-222 166-248 (327)
496 1vpl_A ABC transporter, ATP-bi 93.2 0.045 1.6E-06 53.4 3.3 26 95-120 40-65 (256)
497 2rhm_A Putative kinase; P-loop 93.2 0.054 1.9E-06 49.5 3.7 24 95-118 4-27 (193)
498 3t61_A Gluconokinase; PSI-biol 93.2 0.042 1.4E-06 51.0 2.9 24 96-119 18-41 (202)
499 2zu0_C Probable ATP-dependent 93.2 0.048 1.6E-06 53.5 3.4 26 94-119 44-69 (267)
500 2qi9_C Vitamin B12 import ATP- 93.1 0.046 1.6E-06 53.1 3.2 26 95-120 25-50 (249)
No 1
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-67 Score=550.56 Aligned_cols=358 Identities=68% Similarity=1.112 Sum_probs=272.1
Q ss_pred hhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-------------------cCCeEEEEeC
Q psy17315 88 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-------------------VPAFLNVVDI 148 (561)
Q Consensus 88 ~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-------------------~~~~i~l~Dt 148 (561)
...++...+++|++||.||||||||||+|++....++++||+|.+++.+.. .+..+.++||
T Consensus 14 ~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt 93 (396)
T 2ohf_A 14 PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI 93 (396)
T ss_dssp --CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred HHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence 456677788999999999999999999999988888999999998876621 1446999999
Q ss_pred CCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCC
Q psy17315 149 AGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKK 228 (561)
Q Consensus 149 pG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~ 228 (561)
||+..+.+.+.+++..|+.+++++|+|+||+|++
T Consensus 94 pGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~---------------------------------------------- 127 (396)
T 2ohf_A 94 AGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAF---------------------------------------------- 127 (396)
T ss_dssp CC-----------CCHHHHHHHTSSSEEEEEEC-----------------------------------------------
T ss_pred CCcccccchhhHHHHHHHHHHHhcCeEEEEEecC----------------------------------------------
Confidence 9999888777889999999999999999999764
Q ss_pred ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHH
Q psy17315 229 TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINK 308 (561)
Q Consensus 229 ~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~ 308 (561)
....+.++.|..||+++++.+..++.++|...+++++++
T Consensus 128 -----------------------------------------~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~ 166 (396)
T 2ohf_A 128 -----------------------------------------EDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDK 166 (396)
T ss_dssp ----------------------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------------------------CCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhh
Confidence 122233445677899999999999999999998887766
Q ss_pred HHHHHhh-CCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCC-Cccc-CCCCCHHHHHHHHhhhhccCC
Q psy17315 309 IEKLVQR-GDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDK-RHAR-YGDWSNADIEHLNKLNLLTAK 385 (561)
Q Consensus 309 l~~~~~~-~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~-~~~~-~~~~~~~e~~~l~~~~~l~~k 385 (561)
+.+...+ +.+....+ .+++..+..++.+ . .+.+ ...|+.+|.+.++.+.+++.|
T Consensus 167 ~~k~~~~~g~~~~~~~---------------------~~ll~~i~~~L~e--~~~~~~~~~~~~~~e~e~i~~~~llt~K 223 (396)
T 2ohf_A 167 LEKVAVRGGDKKLKPE---------------------YDIMCKVKSWVID--QKKPVRFYHDWNDKEIEVLNKHLFLTSK 223 (396)
T ss_dssp TCSCC--------CCH---------------------HHHHHHHHHHTTC----CCGGGCCCCCHHHHHHHHHHCCGGGS
T ss_pred hhhhhhcccchhhhhH---------------------HHHHHHHHHHHHh--cCcchhhcccCCHHHHHHHHHHHHHhCC
Confidence 5543221 11211122 2777777888877 5 5555 347898988989888888999
Q ss_pred ceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHccc
Q psy17315 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465 (561)
Q Consensus 386 P~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l 465 (561)
|++|++|+.+.+..+..+.++..+++++....++.++|++||+.+..|.+|.++++.+|++++|.+++++++++.+|++|
T Consensus 224 Pviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L 303 (396)
T 2ohf_A 224 PMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAAL 303 (396)
T ss_dssp CEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred ceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 99999999977766545778888988876543468899999999999999999999999999996699999999999999
Q ss_pred CceeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEE
Q psy17315 466 QLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDII 545 (561)
Q Consensus 466 ~li~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~ 545 (561)
+|++|||+||+|+|||++++|+||+|+|+.|||||++|||||+||+|+||+++|||++||++|++|++||||+|+|||||
T Consensus 304 ~li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii 383 (396)
T 2ohf_A 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDII 383 (396)
T ss_dssp TEEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q psy17315 546 FFKFNAGAGL 555 (561)
Q Consensus 546 ~~~~~~~~~~ 555 (561)
+||||++++.
T Consensus 384 ~f~fn~~~~~ 393 (396)
T 2ohf_A 384 FFKFNTPQQP 393 (396)
T ss_dssp EEEEC-----
T ss_pred EEEecCCccc
Confidence 9999998764
No 2
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=3e-67 Score=544.22 Aligned_cols=342 Identities=41% Similarity=0.761 Sum_probs=289.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-c------------------CCeEEEEeCCCcccCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-V------------------PAFLNVVDIAGLVKGAA 156 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~------------------~~~i~l~DtpG~~~~~~ 156 (561)
+++|++||.||||||||||+|++....++++||+|.+++.+.. . +..+.++||||+..+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 4789999999999999999999988888999999999887621 1 24799999999998877
Q ss_pred cccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHHHHH
Q psy17315 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 157 ~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
.+.+++.+|+.+++++|+++||+|++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~------------------------------------------------------ 107 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCF------------------------------------------------------ 107 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS------------------------------------------------------
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecC------------------------------------------------------
Confidence 67788899999999999999999765
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhC
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRG 316 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~ 316 (561)
...++.++.|.+||.+++..+..||.++|...+++++.++.+....+
T Consensus 108 ---------------------------------~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g 154 (363)
T 1jal_A 108 ---------------------------------ENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGG 154 (363)
T ss_dssp ---------------------------------CC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ---------------------------------CCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhcc
Confidence 22334556677899999999999999999999999999887764323
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChh
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~ 396 (561)
.+....+. +.+..+..++++ ..+.+...|++++...+..+.+++.||+++|+||.|.
T Consensus 155 ~~~~~~~~---------------------~~l~~~~~~L~~--~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~ 211 (363)
T 1jal_A 155 DKEAKFEL---------------------SVMEKILPVLEN--AGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNED 211 (363)
T ss_dssp CHHHHHHH---------------------HHHHHHHHHHHT--TCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTT
T ss_pred chhHHHHH---------------------HHHHHHHHHHhc--CCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccc
Confidence 33222222 778888888887 6777767899999999998888889999999999976
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccchHHHHHHHHHcccCceeccccCC
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQGYKSLQLQYFFTAGQ 475 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~~t~~~ 475 (561)
+. ..+.+.+.++++.... +.++|++||+.+..|.+|.++++.+|+++++ .+++++++++.+|+.|+|++|||+|+
T Consensus 212 ~~--~~n~~~~~v~~~~~~~--~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~ 287 (363)
T 1jal_A 212 GF--ENNPYLDRVREIAAKE--GAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGV 287 (363)
T ss_dssp CS--SSCHHHHHHHHHHHHT--TCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECS
T ss_pred cc--cccHHHHHHHHHHHHc--CCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCC
Confidence 54 2456788888887665 6789999999999999999988899999988 78999999999999999999999999
Q ss_pred CceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEecC
Q psy17315 476 DEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551 (561)
Q Consensus 476 ~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~~~ 551 (561)
+|+|||++++|+||+|+|++|||||+||||||+||+|+||+++|||++||++|++|++||||+|+|||||+||||+
T Consensus 288 ~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~fn~ 363 (363)
T 1jal_A 288 KEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFNV 363 (363)
T ss_dssp SEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEESCC
T ss_pred CCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
No 3
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=1.7e-65 Score=534.57 Aligned_cols=342 Identities=42% Similarity=0.668 Sum_probs=288.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-----------------------ccCCeEEEEeCCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-----------------------KVPAFLNVVDIAGLVK 153 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-----------------------~~~~~i~l~DtpG~~~ 153 (561)
++|++||.||||||||+|+|++....++++|++|.+++.+. ..+..+.++||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999988777899999999887763 1345799999999998
Q ss_pred CCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCccHHH
Q psy17315 154 GAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGE 233 (561)
Q Consensus 154 ~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~~~~ 233 (561)
+.+.+.+++++|+.+++++|++++|+|++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~--------------------------------------------------- 110 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCF--------------------------------------------------- 110 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECC---------------------------------------------------
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECC---------------------------------------------------
Confidence 88777788899999999999999999865
Q ss_pred HHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHH
Q psy17315 234 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLV 313 (561)
Q Consensus 234 l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~ 313 (561)
....+.++.|.+||.+++..+..+|.++|...++++++++.+..
T Consensus 111 ------------------------------------~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~ 154 (368)
T 2dby_A 111 ------------------------------------PDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEA 154 (368)
T ss_dssp ------------------------------------CCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------CCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhh
Confidence 11233455677899999999999999999999999999887654
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
. +.+....+. +++..+..++++ ..+.+...|++++...++.+.+++.||+++++||
T Consensus 155 ~-~~~~~~~~~---------------------~~l~~~~~~L~~--~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~ 210 (368)
T 2dby_A 155 R-ADRERLPLL---------------------EAAEGLYVHLQE--GKPARTFPPSEAVARFLKETPLLTAKPVIYVANV 210 (368)
T ss_dssp H-HCGGGHHHH---------------------HHHHHHHHHHHT--TCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEEC
T ss_pred c-cchhHHHHH---------------------HHHHHHHHHHhc--CCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccc
Confidence 2 222221222 777888888887 5555656789999999999998889999999999
Q ss_pred Chhhhhhh-ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc-ccchHHHHHHHHHcccCceecc
Q psy17315 394 SAKDYIKK-KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK-ATSVLDKIITQGYKSLQLQYFF 471 (561)
Q Consensus 394 ~D~d~~~~-~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~~ 471 (561)
.|.|+.+. .+.+.+.++++++.. +.+++++||+++.+|.+|.++++.+|+++++ .+++++++++.+|+.|+|++||
T Consensus 211 ~e~d~~~~~~n~~~~~v~~~a~~~--g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~f 288 (368)
T 2dby_A 211 AEEDLPDGRGNPQVEAVRRKALEE--GAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFF 288 (368)
T ss_dssp CGGGTTTCTTCHHHHHHHHHHHHH--TCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred cHHhhcccchhhHHHHHHHHHHHc--CCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEE
Confidence 97665431 256788888887665 6789999999999999999999999999998 7899999999999999999999
Q ss_pred ccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEecC
Q psy17315 472 TAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551 (561)
Q Consensus 472 t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~~~ 551 (561)
|+|++++|||++++|+||+|+|++|||||+||||||+||+|+||+++|||++||++|++|++||||+|||||||+||||+
T Consensus 289 t~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~f~~ 368 (368)
T 2dby_A 289 TAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368 (368)
T ss_dssp EESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEEC--
T ss_pred CCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
No 4
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2.3e-64 Score=528.71 Aligned_cols=358 Identities=50% Similarity=0.885 Sum_probs=300.7
Q ss_pred hhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCccccc-c------------------CCeEEEEeC
Q psy17315 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNENNK-V------------------PAFLNVVDI 148 (561)
Q Consensus 89 ~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~~~-~------------------~~~i~l~Dt 148 (561)
..++...+.+++++|.||||||||||+|++... .++++||+|++++.+.. . +..+.++||
T Consensus 13 ~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 13 QWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp CCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 456677789999999999999999999999885 89999999999987732 2 236899999
Q ss_pred CCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCC
Q psy17315 149 AGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKK 228 (561)
Q Consensus 149 pG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~ 228 (561)
||+..+.+.++++++.|+..++.+|++++|+|+.
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~---------------------------------------------- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAF---------------------------------------------- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECC----------------------------------------------
T ss_pred cccccCCcHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------------------------------
Confidence 9999888877889889999999999999999653
Q ss_pred ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHH
Q psy17315 229 TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINK 308 (561)
Q Consensus 229 ~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~ 308 (561)
....+.++.|.+||++++.+++.++.++|...+++.++.
T Consensus 127 -----------------------------------------~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~ 165 (392)
T 1ni3_A 127 -----------------------------------------DDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEG 165 (392)
T ss_dssp -----------------------------------------CTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------ccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHH
Confidence 122334455677999999999999999999998888887
Q ss_pred HHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCC-CcccCCCCCHHHHHHHHhhhhccCCce
Q psy17315 309 IEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDK-RHARYGDWSNADIEHLNKLNLLTAKTQ 387 (561)
Q Consensus 309 l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~-~~~~~~~~~~~e~~~l~~~~~l~~kP~ 387 (561)
+.....++...+....... ..+++..+..++.+ + .+.+...|+++|.+.++.+.+++.||+
T Consensus 166 l~~~~~~~g~ti~sh~~~~----------------~~~l~~~i~~~L~~--G~~~~~~~~~~~~e~e~i~~~~~lt~kp~ 227 (392)
T 1ni3_A 166 LRKITSRGANTLEMKAKKE----------------EQAIIEKVYQYLTE--TKQPIRKGDWSNREVEIINSLYLLTAKPV 227 (392)
T ss_dssp HHHTTCCSSCSSSHHHHHH----------------HHHHHHHHHHHHHT--TCSCGGGSCCCHHHHHHHHTTCCGGGSCE
T ss_pred HHHHHHhcCCccccccHHH----------------HHHHHHHHHHHhcc--CCceeecCCCCHHHHHHHHHHhhhccCce
Confidence 7765111211110011111 11566677777777 6 666667889999999998888899999
Q ss_pred EEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCc
Q psy17315 388 IYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQL 467 (561)
Q Consensus 388 iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~l 467 (561)
++++|+.|.+...+.+.+++++++++....|+.++|++||+.+..|.+|.++++.+|+++++.+++++++++.+|++|+|
T Consensus 228 ~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l 307 (392)
T 1ni3_A 228 IYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNL 307 (392)
T ss_dssp EEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTE
T ss_pred EEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCC
Confidence 99999998665423477889999988776556789999999999999999999999999999889999999999999999
Q ss_pred eeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 468 QYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 468 i~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
++|||+||+|+|||++++|+||+|+||+|||||+||||||+||+|+||+++|||++||++|+.|++||||+|+|||||+|
T Consensus 308 ~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f 387 (392)
T 1ni3_A 308 INYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHW 387 (392)
T ss_dssp EEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEEC
T ss_pred EEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q psy17315 548 KFNA 551 (561)
Q Consensus 548 ~~~~ 551 (561)
|||+
T Consensus 388 ~f~~ 391 (392)
T 1ni3_A 388 KAGK 391 (392)
T ss_dssp C---
T ss_pred EccC
Confidence 9997
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2.7e-44 Score=379.42 Aligned_cols=330 Identities=25% Similarity=0.373 Sum_probs=218.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-----------------------c---CCeEEEEeCCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-----------------------V---PAFLNVVDIAG 150 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-----------------------~---~~~i~l~DtpG 150 (561)
++|+++|.||||||||||+|++..+.++++||+|++++.+.. . ..++.++||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 479999999999999999999988888999999999887631 0 13699999999
Q ss_pred cccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhccccccCcCCCCCcc
Q psy17315 151 LVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKMGPKKTD 230 (561)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~~~~~~~ 230 (561)
+..+.+.+.+++.+|+.+++++|++++|+|++..
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~---------------------------------------------- 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK---------------------------------------------- 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC----------------------------------------------
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc----------------------------------------------
Confidence 9877666677889999999999999999986410
Q ss_pred HHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHH
Q psy17315 231 EGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIE 310 (561)
Q Consensus 231 ~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~ 310 (561)
......++ +++||.++++.+..+|.+||+..+++++.++.
T Consensus 115 ---------------------------------------~~~~g~~~-~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~ 154 (397)
T 1wxq_A 115 ---------------------------------------TDPEGQPT-DYHDPVEDIEFLEREIDYWIYGILSKGWDKFA 154 (397)
T ss_dssp ---------------------------------------BCTTSCBC-SCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred ---------------------------------------cCCCCccc-CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 00111122 25699999999999999999999988888887
Q ss_pred HHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEE
Q psy17315 311 KLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYL 390 (561)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv 390 (561)
+...++.... ...+...+++ .+. ..+.+..+.+.+.. ..+ ...|+.++...+....+++.+|+|+|
T Consensus 155 k~~~~~~~~~-~~~~~~~l~g--------~~~-~~~~~~~~l~~l~~--~~~--~~~~~~~e~~~l~~~~~~~~kP~i~v 220 (397)
T 1wxq_A 155 KRIKLQKIKL-ESAIAEHLSG--------IGV-NENDVWEAMHKLNL--PED--PTKWSQDDLLAFASEIRRVNKPMVIA 220 (397)
T ss_dssp STTTSSCCCH-HHHHHHHTGG--------GTC-CHHHHHHHHHHTTC--CSC--GGGCCHHHHHHHHHHHHHHHSCEEEE
T ss_pred HHHhhcCccH-HHHHHHHhcc--------cCC-CHHHHHHHHHHhcc--CCc--cccCCHHHHHHHHHhhhccCCCEEEE
Confidence 5433222111 1111111111 011 12445555555544 222 23688888777777776678999999
Q ss_pred ecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCC---------------------HHH-------HH
Q psy17315 391 VNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMP---------------------DDE-------RQ 442 (561)
Q Consensus 391 ~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~---------------------~~~-------~~ 442 (561)
+||+|.+ ....++++.+.+... +.+++++||+.|.|+.+|. ++. ++
T Consensus 221 ~NK~D~~----~~~~l~~l~~~~~~~--~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire 294 (397)
T 1wxq_A 221 ANKADAA----SDEQIKRLVREEEKR--GYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKE 294 (397)
T ss_dssp EECGGGS----CHHHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHH
T ss_pred EeCcccc----chHHHHHHHHHHhhc--CCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHH
Confidence 9999643 234456665554432 4689999999999998752 222 23
Q ss_pred HHHHHhcccchHHHHHH-HHHcccCceeccccCC----------CceeccccCCCCCccccccccccccCCCeEEEEEec
Q psy17315 443 RYLDEQKATSVLDKIIT-QGYKSLQLQYFFTAGQ----------DEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMH 511 (561)
Q Consensus 443 ~~~~~~~~~~~l~~li~-~~~~~l~li~~~t~~~----------~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~ 511 (561)
+|++.++ +++++++++ .+|+.|+|++|||+|+ .++++|++++|+|++|+|+.||+||+++|++|+
T Consensus 295 ~~l~~~g-~~g~~~~i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~--- 370 (397)
T 1wxq_A 295 KVLDRFG-STGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI--- 370 (397)
T ss_dssp HHTSSSS-SCSHHHHHHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEE---
T ss_pred HHHHHhC-cchHHHHHHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhH---
Confidence 5666677 788999996 5599999999999762 366999999999999999999999999999998
Q ss_pred hhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEEec
Q psy17315 512 FDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 550 (561)
Q Consensus 512 ~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~~~ 550 (561)
+++| .+++|++|+|+|||||+|.-.
T Consensus 371 -------------~~~~-~~~~g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 371 -------------NART-KRRVGEDYELQFNDIVKIVSV 395 (397)
T ss_dssp -------------ETTT-CSBCCTTCCCCTTEEEEEEEC
T ss_pred -------------HhcC-CEEcCCCccccCCCEEEEEeC
Confidence 1245 367899999999999999753
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-43 Score=364.92 Aligned_cols=288 Identities=18% Similarity=0.295 Sum_probs=192.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
-.+|++||+||||||||||+|++....++++||+|++++.+. ..+.+++|+||||++++.+.+.+++++|++.+++||
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 468999999999999999999999989999999999998874 356789999999999988888899999999999999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch--------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS--------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++|+|+. .+....+.+..+|...... +.||+|...-
T Consensus 152 ~il~vvD~~------------~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi---------------------- 197 (376)
T 4a9a_A 152 LLFIILDVN------------KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGI---------------------- 197 (376)
T ss_dssp EEEEEEETT------------SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCE----------------------
T ss_pred ccccccccC------------ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhh----------------------
Confidence 999999875 2334455555666543321 5555554300
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
.. ..+. +...+ | .+....+...+.-..+.....
T Consensus 198 -----------------------------~i-~~~~-~~~~l----------~----~eeik~il~~~~lt~kpv~~~-- 230 (376)
T 4a9a_A 198 -----------------------------SI-TNTV-PLTHL----------G----NDEIRAVMSEYRINSAEIAFR-- 230 (376)
T ss_dssp -----------------------------EE-EESS-CCSSC----------C----HHHHHHHHHHTTCCSEEEEEC--
T ss_pred -----------------------------hh-hcch-hhhhc----------c----HHHHHHHHHHhcccCCCeeec--
Confidence 00 0000 00000 0 000111111110001111000
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
..++.++............+|+++++||+|. ..
T Consensus 231 ----------------------------------------~nv~eddl~d~~~~~~~~~~p~i~v~nKid~--~~----- 263 (376)
T 4a9a_A 231 ----------------------------------------CDATVDDLIDVLEASSRRYMPAIYVLNKIDS--LS----- 263 (376)
T ss_dssp ----------------------------------------SCCCHHHHHHHHTTTTCEEECEEEEEECGGG--SC-----
T ss_pred ----------------------------------------ccCCHHHHHHHHHHHHhhccceEEEEecccc--cC-----
Confidence 1122222222221222257899999999943 21
Q ss_pred HHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCceeccccCCCceeccccCC
Q psy17315 406 LPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQK 485 (561)
Q Consensus 406 ~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~~t~~~~ev~a~~~~~ 485 (561)
.+++.... . ....+++|+..+.| ++++++.+|+.|+|++|||+|++|+|+|++|.
T Consensus 264 ~eele~l~-~---~~~~~~is~~~e~g---------------------Ld~Li~~~y~~L~Li~~fT~g~~E~rawt~~~ 318 (376)
T 4a9a_A 264 IEELELLY-R---IPNAVPISSGQDWN---------------------LDELLQVMWDRLNLVRIYTKPKGQIPDFTDPV 318 (376)
T ss_dssp HHHHHHHT-T---STTEEECCTTTCTT---------------------HHHHHHHHHHHHCCEEEEECCSSSCCCSSSCE
T ss_pred HHHHHHHh-c---ccchhhhhhhhccc---------------------chhHHHHHHHHcCCcEEEeCCCCCcCCCCccc
Confidence 22333322 1 24578999887665 55678889999999999999999999999987
Q ss_pred CCCcc-----ccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEEE
Q psy17315 486 GTKAP-----QAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFK 548 (561)
Q Consensus 486 g~ta~-----~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~~ 548 (561)
|.+++ |+|+.||+|+.++|++|+||+.+ + +++.|++||||+|+|||||+|.
T Consensus 319 ~~~a~~at~~D~a~~ih~d~~~~F~~a~v~Gs~----------~--K~~~r~eGkdyvv~DGDVi~iv 374 (376)
T 4a9a_A 319 VLRSDRCSVKDFCNQIHKSLVDDFRNALVYGSS----------V--KHQPQYVGLSHILEDEDVVTIL 374 (376)
T ss_dssp EEBTTBCBHHHHHHHHCGGGGGGEEEEEEESTT----------S--SSSSEEECTTCBCCTTCEEEEE
T ss_pred cccCCCCcHHHHHHHHHHHHHHhhhHhhhcCcc----------c--CCCCCccCCCcEEcCCCEEEEE
Confidence 76666 45999999999999999999754 3 4445999999999999999985
No 7
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.95 E-value=1.1e-27 Score=256.52 Aligned_cols=322 Identities=18% Similarity=0.180 Sum_probs=167.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc-ccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~ 172 (561)
.+|++||.||||||||+|+|++.. +.+++.||+|++...+. ..+..+.+|||||+...... ...+......++++|
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 589999999999999999999987 67899999999876542 33567999999999743211 112333445678899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcC---------CCC-----Ccc-----
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKM---------GPK-----KTD----- 230 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~---------~~~-----~~~----- 230 (561)
|++++|+|++.... .. . ..+.+.+.....+ |+||+|..+.. +.. ++.
T Consensus 84 d~il~vvD~~~~~~---------~~-d-~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 84 DVIIFMVNGREGVT---------AA-D-EEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp SEEEEEEETTTCSC---------HH-H-HHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTH
T ss_pred CEEEEEEeCCCCCC---------HH-H-HHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCCh
Confidence 99999998763110 00 0 1122222222233 89999986431 110 111
Q ss_pred HHHHHHHhhhcC---------CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccH
Q psy17315 231 EGEKKMLLGRVG---------TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDV 299 (561)
Q Consensus 231 ~~~l~~l~~~~~---------~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt 299 (561)
...++.+...+. ...++++.|.+|+|||+|+|++++..+ ..++..+||+ |... .+...+..+.+|||
T Consensus 153 ~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~--~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT 230 (436)
T 2hjg_A 153 GDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVDTSFTYNQQEFVIVDT 230 (436)
T ss_dssp HHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTT--EEEC---------CCEEEEETTEEEEETTH
T ss_pred HHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCc--eeecCCCCceeeeeEEEEEECCeEEEEEEC
Confidence 122333332222 336899999999999999999998743 2233344554 3332 23444557899999
Q ss_pred HHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhh
Q psy17315 300 EHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKL 379 (561)
Q Consensus 300 ~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~ 379 (561)
||+.+.. ......+.+ ..+.. ...+..+++++.|.+. ....+.++..++...
T Consensus 231 ~G~~~~~---------~~~~~~e~~-~~~~~--------~~~~~~ad~~llv~D~----------~~~~s~~~~~~~~~~ 282 (436)
T 2hjg_A 231 AGMRKKG---------KVYETTEKY-SVLRA--------LKAIDRSEVVAVVLDG----------EEGIIEQDKRIAGYA 282 (436)
T ss_dssp HHHTCBT---------TBCCCCSHH-HHHHH--------HHHHHHCSEEEEEEET----------TTCCCHHHHHHHHHH
T ss_pred CCcCcCc---------cccchHHHH-HHHHH--------HHHHHhCCEEEEEEcC----------CcCCcHHHHHHHHHH
Confidence 9973210 000000111 00000 0000000111111110 012345555555443
Q ss_pred hhccCCceEEEecCChhhhhhhccc----hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--ccch
Q psy17315 380 NLLTAKTQIYLVNLSAKDYIKKKNK----WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--ATSV 453 (561)
Q Consensus 380 ~~l~~kP~iiv~NK~D~d~~~~~~~----~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~~~~ 453 (561)
.. .++|+++|+||+| +.+.... ..+.+.+.+... .+.+++++||++|.|+.++.+...+.+.+... +++.
T Consensus 283 ~~-~~~~iiiv~NK~D--l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ 358 (436)
T 2hjg_A 283 HE-AGKAVVIVVNKWD--AVDKDESTMKEFEENIRDHFQFL-DYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNV 358 (436)
T ss_dssp HH-TTCEEEEEEECGG--GSCCCTTHHHHHHHHHHHHCGGG-TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHH
T ss_pred HH-cCCcEEEEEECcc--CCCcchHHHHHHHHHHHHhcccC-CCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHH
Confidence 33 5899999999995 4332222 222333332222 36789999999999999998888777765533 6677
Q ss_pred HHHHHHHHHc
Q psy17315 454 LDKIITQGYK 463 (561)
Q Consensus 454 l~~li~~~~~ 463 (561)
++.++..+..
T Consensus 359 ln~~l~~~~~ 368 (436)
T 2hjg_A 359 LNDVIMDAVA 368 (436)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 8
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.94 E-value=2.9e-28 Score=261.26 Aligned_cols=319 Identities=22% Similarity=0.270 Sum_probs=170.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc--cccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~ 171 (561)
.+|++||.||||||||||+|++.. +.++++||+|++...+. +.+..+.+|||||+...... ...+..+...++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 479999999999999999999987 66899999999987652 34557999999999753221 11233445667899
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch---hhccccccCc----C-------CC-----CCcc-
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS---VDAKADSKKK----M-------GP-----KKTD- 230 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~---v~NK~D~~~~----~-------~~-----~~~~- 230 (561)
||++++|+|++..- ... ..+.+.+.....+ |+||+|..+. . +. .++.
T Consensus 82 ad~il~V~D~~~~~------------~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 82 ADLVLFVVDGKRGI------------TKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEH 149 (439)
T ss_dssp CSEEEEEEETTTCC------------CHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTT
T ss_pred CCEEEEEEECCCCC------------CHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccC
Confidence 99999999975311 001 1122233333333 7888887422 0 11 1111
Q ss_pred ----HHHHHHHhhhc-------------CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccc-hhhhh
Q psy17315 231 ----EGEKKMLLGRV-------------GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRD-IEIIN 291 (561)
Q Consensus 231 ----~~~l~~l~~~~-------------~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~-~~~~~ 291 (561)
...++.+...+ ....+++++|.+|+|||+|+|.+++..+ ..++..+|++ |+... +.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~--~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKER--ALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTT--EEECCCC------CCEEEEETT
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcc--cccCCCCCCcCCceEEEEEECC
Confidence 11122221111 1235899999999999999999998742 3345555665 55432 44455
Q ss_pred HhhhcccHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCc--cc-CCCC
Q psy17315 292 EELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRH--AR-YGDW 368 (561)
Q Consensus 292 ~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~--~~-~~~~ 368 (561)
..+.+|||||+++.. .+..... +.+ .. ......+ ..++... .+ ....
T Consensus 228 ~~~~l~Dt~G~~~~~-~~~~~~~-------e~~-~~-----------------~~~~~~i----~~ad~vllv~d~~~~~ 277 (439)
T 1mky_A 228 RKYVFVDTAGLRRKS-RVEPRTV-------EKY-SN-----------------YRVVDSI----EKADVVVIVLDATQGI 277 (439)
T ss_dssp EEEEESSCSCC-------------------CCS-CC-----------------HHHHHHH----HHCSEEEEEEETTTCC
T ss_pred EEEEEEECCCCcccc-ccchhhH-------HHH-HH-----------------HHHHHHH----hhCCEEEEEEeCCCCC
Confidence 678899999975421 1110000 000 00 0111111 1000000 00 0122
Q ss_pred CHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHH----HHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 369 SNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIK----EWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 369 ~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~----~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
+..+..+..... ..++|+++|+||+|. .+......+++. +.+... .+.+++++||++|.|+.+|.+...+.+
T Consensus 278 ~~~~~~i~~~l~-~~~~~~ilv~NK~Dl--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 278 TRQDQRMAGLME-RRGRASVVVFNKWDL--VVHREKRYDEFTKLFREKLYFI-DYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp CHHHHHHHHHHH-HTTCEEEEEEECGGG--STTGGGCHHHHHHHHHHHCGGG-TTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HcCCCEEEEEECccC--CCchhhHHHHHHHHHHHHhccC-CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444333322 258999999999954 322221122222 222211 257899999999999999988877766
Q ss_pred HHHhc--ccchHHHHHHHHHc
Q psy17315 445 LDEQK--ATSVLDKIITQGYK 463 (561)
Q Consensus 445 ~~~~~--~~~~l~~li~~~~~ 463 (561)
.+... +++.+++++..+..
T Consensus 354 ~~~~~~i~t~~ln~~l~~~~~ 374 (439)
T 1mky_A 354 ASYTTKVPSSAINSALQKVLA 374 (439)
T ss_dssp HHHTCCCCHHHHHHHHHHHHT
T ss_pred HhhcccCCHHHHHHHHHHHHH
Confidence 55433 67788888887754
No 9
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.94 E-value=5.6e-27 Score=252.49 Aligned_cols=323 Identities=17% Similarity=0.174 Sum_probs=170.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc-cccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~ 171 (561)
..+|+++|.||||||||+|+|++.. ..+.+.||+|++..... ..+..+.+|||||+...... ...+......++++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 3689999999999999999999988 67889999999876542 34567999999998732211 11233334556789
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcch---hhccccccCcCC---------C-----CCcc---
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRRS---VDAKADSKKKMG---------P-----KKTD--- 230 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~---v~NK~D~~~~~~---------~-----~~~~--- 230 (561)
+|++++|+|++.. ....+ .+.+.+.....+ |+||+|..+... . .++.
T Consensus 103 ad~il~VvD~~~~------------~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 103 ADVIIFMVNGREG------------VTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGL 170 (456)
T ss_dssp CSEEEEEEESSSC------------SCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCT
T ss_pred CCEEEEEEeCCCC------------CChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeeccccc
Confidence 9999999987521 01111 122223222223 889999864321 1 0111
Q ss_pred --HHHHHHHhhhc---------CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcc
Q psy17315 231 --EGEKKMLLGRV---------GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLK 297 (561)
Q Consensus 231 --~~~l~~l~~~~---------~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~ 297 (561)
...+..+.... ....++.+.|.+|+|||+|+|.+++.. ...++..+||+ |... .+...+..+.+|
T Consensus 171 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~l~ 248 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE--RVIVSNVAGTTRDAVDTSFTYNQQEFVIV 248 (456)
T ss_dssp THHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--TEEECC------CTTSEEEEETTEEEEET
T ss_pred chHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC--ccccCCCCCeEEEEEEEEEEECCceEEEE
Confidence 12233332222 234689999999999999999999763 22334444554 3332 234445678999
Q ss_pred cHHHHHHHHHHHHHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHH
Q psy17315 298 DVEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLN 377 (561)
Q Consensus 298 Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~ 377 (561)
||||+.+.- ......+.+ .... ....+..+++++.|++. ...+.+.+..++.
T Consensus 249 DT~G~~~~~---------~~~~~~e~~-~~~~--------~~~~~~~ad~~llviD~----------~~~~~~~~~~~~~ 300 (456)
T 4dcu_A 249 DTAGMRKKG---------KVYETTEKY-SVLR--------ALKAIDRSEVVAVVLDG----------EEGIIEQDKRIAG 300 (456)
T ss_dssp TGGGTTTBT---------TBCCCCSHH-HHHH--------HHHHHHHCSEEEEEEET----------TTCCCHHHHHHHH
T ss_pred ECCCCCcCc---------ccchHHHHH-HHHH--------HHHHHhhCCEEEEEEeC----------CCCcCHHHHHHHH
Confidence 999963210 000000111 0000 00000011111111110 0123455555554
Q ss_pred hhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCCHHHHHHHHHHhc--ccc
Q psy17315 378 KLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPDDERQRYLDEQK--ATS 452 (561)
Q Consensus 378 ~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~--~~~ 452 (561)
.... .++|+|+|+||+| +........+++.+.++... .+.+++++||++|.|+.+|.+...+.+.+... +++
T Consensus 301 ~~~~-~~~~~ilv~NK~D--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~ 377 (456)
T 4dcu_A 301 YAHE-AGKAVVIVVNKWD--AVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTN 377 (456)
T ss_dssp HHHH-TTCEEEEEEECGG--GSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHH
T ss_pred HHHH-cCCCEEEEEEChh--cCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHH
Confidence 4433 5799999999995 44323333344444333321 25789999999999999998887777665543 566
Q ss_pred hHHHHHHHHHc
Q psy17315 453 VLDKIITQGYK 463 (561)
Q Consensus 453 ~l~~li~~~~~ 463 (561)
.+++++..+..
T Consensus 378 ~ln~~l~~~~~ 388 (456)
T 4dcu_A 378 VLNDVIMDAVA 388 (456)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888776654
No 10
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.80 E-value=6.8e-20 Score=184.56 Aligned_cols=140 Identities=26% Similarity=0.345 Sum_probs=100.1
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc--cccccccCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK--ADSKKKMGP 78 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~--~~~~~~~~~ 78 (561)
.+++|+|+|||+| .+++|+.+++ +.++||++ +||++++..+.|.+++++.+..+ +++..+.+.
T Consensus 24 aDvVl~VvDAr~p------~~~~~~~l~~----~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi 93 (282)
T 1puj_A 24 IDIVYELVDARIP------MSSRNPMIED----ILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGL 93 (282)
T ss_dssp CSEEEEEEETTST------TTTSCHHHHH----HCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred CCEEEEEEeCCCC------CccCCHHHHH----HHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccH
Confidence 4678999999999 9999999998 77888887 99999988999999998767655 677666665
Q ss_pred CCchhhhH---------hhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeC
Q psy17315 79 KKTDEGEK---------KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDI 148 (561)
Q Consensus 79 ~~~~~~~~---------~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~Dt 148 (561)
........ ....+....+++++++|.||||||||+|+|++.. +.+++.||+|++.+. ...+..+.++||
T Consensus 94 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~-~~~~~~~~l~Dt 172 (282)
T 1puj_A 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW-VKVGKELELLDT 172 (282)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC-EEETTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE-EEeCCCEEEEEC
Confidence 54211110 1112234567899999999999999999999988 889999999998764 445668999999
Q ss_pred CCcccCCc
Q psy17315 149 AGLVKGAA 156 (561)
Q Consensus 149 pG~~~~~~ 156 (561)
||+..+..
T Consensus 173 pG~~~~~~ 180 (282)
T 1puj_A 173 PGILWPKF 180 (282)
T ss_dssp CCCCCSCC
T ss_pred cCcCCCCC
Confidence 99987653
No 11
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.71 E-value=6.4e-18 Score=168.32 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=89.7
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCCCc-cccccccCCC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPK-ADSKKKMGPK 79 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~~~-~~~~~~~~~~ 79 (561)
.+++|+|+|||+| .+++|+.++ . + ++|++ +||++++..+.|++++++.+..+ +++..+.+..
T Consensus 22 ~D~vl~VvDar~P------~~~~~~~l~-l---l--~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v~iSa~~~~gi~ 89 (262)
T 3cnl_A 22 VNTVVEVRDARAP------FATSAYGVD-F---S--RKETIILLNKVDIADEKTTKKWVEFFKKQGKRVITTHKGEPRKV 89 (262)
T ss_dssp CSEEEEEEETTST------TTTSCTTSC-C---T--TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCEEECCTTSCHHH
T ss_pred CCEEEEEeeCCCC------CcCcChHHH-h---c--CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeEEEECCCCcCHH
Confidence 4678999999999 999999886 2 2 77776 99999988999999998876554 3333332211
Q ss_pred CchhhhHhhhhcCCCCC-cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCC
Q psy17315 80 KTDEGEKKMLLGRVGTN-LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~ 155 (561)
. .. ...... .+++++|.||||||||+|+|++.. ..+++.||+|+.... ...+..+.++||||+..+.
T Consensus 90 ~---L~-----~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~-~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 90 L---LK-----KLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW-FSLENGVKILDTPGILYKN 158 (262)
T ss_dssp H---HH-----HHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE-EECTTSCEEESSCEECCCC
T ss_pred H---HH-----HHHHHhhhheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE-EEeCCCEEEEECCCcccCc
Confidence 1 11 111122 689999999999999999999988 688999999998654 4445679999999998765
No 12
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.66 E-value=2.5e-17 Score=171.66 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=95.7
Q ss_pred CcE-EEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccc---cccccc
Q psy17315 96 NLK-VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGN---AFLSHI 169 (561)
Q Consensus 96 ~~~-v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~---~~l~~i 169 (561)
+++ |+++|+||||||||+|+|++....+++.|++|+++..+.. .+..+.++||||++...+. .+.. ..+..+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~--~lve~f~~tl~~~ 255 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPP--QIVDAFFVTLSEA 255 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCG--GGHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCH--HHHHHHHHHHHHH
Confidence 444 9999999999999999999988778899999999876522 2357899999998754321 2222 235668
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhc--
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRV-- 241 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~-- 241 (561)
+.+|++++|+|++... .....++....+.+..+.. + |.||+|+.... ..........+....
T Consensus 256 ~~aD~il~VvD~s~~~--------~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 256 KYSDALILVIDSTFSE--------NLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD--LYKKLDLVEKLSKELYS 325 (364)
T ss_dssp GGSSEEEEEEETTSCH--------HHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC--HHHHHHHHHHHHHHHCS
T ss_pred HhCCEEEEEEECCCCc--------chHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch--HHHHHHHHHHHHHHhcC
Confidence 8999999999875311 0122333333444444321 1 79999997321 000001121122222
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..|+++|.+..
T Consensus 326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 326 PIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 123468999999999999999998764
No 13
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.66 E-value=3.2e-17 Score=170.74 Aligned_cols=238 Identities=15% Similarity=0.105 Sum_probs=146.2
Q ss_pred EEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHh-c-CCCc--cccccccCCCCc
Q psy17315 11 KLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSD-K-LRPK--ADSKKKMGPKKT 81 (561)
Q Consensus 11 ev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~-~-~~~~--~~~~~~~~~~~~ 81 (561)
.++|++.| ++++||.+++....+.+.|+.+ +||+++...+.|..|++. . +... .+........+.
T Consensus 63 ~i~~~~~~------l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (357)
T 2e87_A 63 KVLERTPG------LSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRV 136 (357)
T ss_dssp HHHHHSCC------GGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC------cccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 56788989 9999999998332333677665 799999999999999986 3 4443 111111111110
Q ss_pred hhh----hH-------h--hh---hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeE
Q psy17315 82 DEG----EK-------K--ML---LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFL 143 (561)
Q Consensus 82 ~~~----~~-------~--~~---~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i 143 (561)
... .. . .. ........+|+++|.||||||||+|+|++....+++.|++|.+...+.. .+..+
T Consensus 137 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 216 (357)
T 2e87_A 137 ASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRY 216 (357)
T ss_dssp HHHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceE
Confidence 000 00 0 00 0112456899999999999999999999988777888999988765422 23568
Q ss_pred EEEeCCCcccCCcccc-cc-ccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhc
Q psy17315 144 NVVDIAGLVKGAAEGQ-GL-GNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDA 216 (561)
Q Consensus 144 ~l~DtpG~~~~~~~~~-~~-~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~N 216 (561)
.++||||+........ .+ ...+......+|++++|+|++... .....+....+. .+... ..+ |.|
T Consensus 217 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~-------~~~~~~~~~~~~-~i~~~~~~~piilV~N 288 (357)
T 2e87_A 217 QIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC-------GFPLEEQIHLFE-EVHGEFKDLPFLVVIN 288 (357)
T ss_dssp EEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT-------SSCHHHHHHHHH-HHHHHTTTSCEEEEEC
T ss_pred EEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc-------cCCHHHHHHHHH-HHHHhcCCCCEEEEEE
Confidence 9999999975432111 11 112223335689999999875311 001111122222 22221 222 899
Q ss_pred cccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 217 KADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 217 K~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
|+|+...... ........ ....+.+.+|+++|.|++.|++++.+..
T Consensus 289 K~Dl~~~~~~-----~~~~~~~~-~~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 289 KIDVADEENI-----KRLEKFVK-EKGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp CTTTCCHHHH-----HHHHHHHH-HTTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred CcccCChHHH-----HHHHHHHH-hcCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 9999743211 11111111 1234679999999999999999998863
No 14
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.65 E-value=5.5e-17 Score=167.46 Aligned_cols=160 Identities=23% Similarity=0.378 Sum_probs=120.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-cC--CeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-VP--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.+|+++|+||||||||+|+|++....++++|++|..++.+.. .+ ..+.++||||+....+...++...|+.++..+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 479999999999999999999988778899999999887632 22 579999999998766666678888999999999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC-C
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT-N 244 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~-~ 244 (561)
+++||+|++..+ ....++.++.+.+++..+. .+ |+||+|+... ...+..+...+.. .
T Consensus 239 ~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-------~e~~~~l~~~l~~~~ 304 (342)
T 1lnz_A 239 VIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-------AENLEAFKEKLTDDY 304 (342)
T ss_dssp EEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-------HHHHHHHHHHCCSCC
T ss_pred EEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-------HHHHHHHHHHhhcCC
Confidence 999999876310 0224455556666666542 11 8999999732 1233444444332 4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|++++.|++.|+++|.+....
T Consensus 305 ~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 305 PVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 67899999999999999999887543
No 15
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.65 E-value=3.6e-16 Score=156.52 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=108.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc-CCeEEEEeCCCcccCCcc--ccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV-PAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~-~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.||||||||||+|++....++++||+|.+...+... +..+.+|||||....... .+.+...++.. ..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHT-TCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhc-CCC
Confidence 46899999999999999999999888899999999987655322 557999999999754321 11222333321 469
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|++++|+|++..+ + ...+..++.+...+ ++||+|+.+..+... ....+...++ .+.+.+
T Consensus 82 d~vi~V~D~t~~e------------~-~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg----~~vi~~ 143 (272)
T 3b1v_A 82 DSILNVVDATNLE------------R-NLYLTTQLIETGIPVTIALNMIDVLDGQGKKI-NVDKLSYHLG----VPVVAT 143 (272)
T ss_dssp SEEEEEEEGGGHH------------H-HHHHHHHHHHTCSCEEEEEECHHHHHHTTCCC-CHHHHHHHHT----SCEEEC
T ss_pred CEEEEEecCCchH------------h-HHHHHHHHHhcCCCEEEEEEChhhCCcCCcHH-HHHHHHHHcC----CCEEEE
Confidence 9999999876311 1 11233344444444 899999986655542 3344444433 378999
Q ss_pred EccCCCCHHHHHHHHHhh
Q psy17315 250 VGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~ 267 (561)
||++|.|+..|++++.+.
T Consensus 144 SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 144 SALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp BTTTTBSHHHHHHHHHHS
T ss_pred EccCCCCHHHHHHHHHHH
Confidence 999999999999999875
No 16
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.65 E-value=1.3e-16 Score=158.44 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=107.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc------ccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE------GQGLGNAFLSH 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~------~~~~~~~~l~~ 168 (561)
.+|+++|.||||||||||+|+|....++++||+|.+...+.. .+..+.++||||+....+. .+.+...++.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~- 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI- 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh-
Confidence 479999999999999999999998889999999988766532 3457999999999765421 1122222221
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+.+|++++|+|++.. .. ...+..++.+...+ |+||+|+.+..+... ....+...++ .+
T Consensus 81 ~~~~d~vi~VvDas~~------------~~-~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg----~~ 142 (256)
T 3iby_A 81 DLEYDCIINVIDACHL------------ER-HLYLTSQLFELGKPVVVALNMMDIAEHRGISI-DTEKLESLLG----CS 142 (256)
T ss_dssp HSCCSEEEEEEEGGGH------------HH-HHHHHHHHTTSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHC----SC
T ss_pred hCCCCEEEEEeeCCCc------------hh-HHHHHHHHHHcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcC----CC
Confidence 1789999999987621 11 11233344444444 899999987655433 2233333332 47
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..|++++.+.
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 143 VIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEECBGGGTBSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 8999999999999999999876
No 17
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.63 E-value=5.3e-16 Score=158.22 Aligned_cols=164 Identities=20% Similarity=0.127 Sum_probs=112.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--c-CCeEEEEeCCCcccCCcc---cccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--V-PAFLNVVDIAGLVKGAAE---GQGLGNAFLS 167 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~-~~~i~l~DtpG~~~~~~~---~~~~~~~~l~ 167 (561)
....|+++|.||||||||+|+|++.+ ..+++.|++|++...+.. . +.++.++||||+..+... +..+......
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 34689999999999999999999998 668999999998766532 2 568999999999865411 1223333456
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc-CC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV-GT 243 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~-~~ 243 (561)
.++.+|++++|+|++.... ......+.+.+.....+ |+||+|+.+.. ......+..+.... ..
T Consensus 89 ~l~~aD~il~VvD~~~~~~----------~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~---~~~~~~~~~l~~~~~~~ 155 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWR----------PRDEEIYQNFIKPLNKPVIVVINKIDKIGPA---KNVLPLIDEIHKKHPEL 155 (308)
T ss_dssp HHHHCSEEEEEEETTTBSC----------HHHHHHHHHHTGGGCCCEEEEEECGGGSSSG---GGGHHHHHHHHHHCTTC
T ss_pred HhhcCCEEEEEEeCCCCCC----------chhHHHHHHHHHhcCCCEEEEEECccCCCCH---HHHHHHHHHHHHhccCC
Confidence 6789999999998863210 11111112222222223 89999997311 11233344555555 45
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
...+.+|+++|.|+..|++++.+.....
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 6789999999999999999999986543
No 18
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.63 E-value=3.6e-16 Score=163.35 Aligned_cols=160 Identities=21% Similarity=0.176 Sum_probs=118.6
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCCh----HHHHHHHHH-HHhcCCC---c--cc
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGP----KAPKRRKQH-LSDKLRP---K--AD 71 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~----~~~~~w~~~-l~~~~~~---~--~~ 71 (561)
+++|.|+|+++| .++.++.+.+ +.+++|.+ +||.++ +..+.|+.. +++.+.. + ++
T Consensus 73 ~lil~VvD~~d~------~~s~~~~l~~----~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 142 (369)
T 3ec1_A 73 ALVVNIVDIFDF------NGSFIPGLPR----FAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVS 142 (369)
T ss_dssp CEEEEEEETTCS------GGGCCSSHHH----HCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECB
T ss_pred cEEEEEEECCCC------CCchhhHHHH----HhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 578999999999 8999999988 67788887 999875 457788754 5666653 2 66
Q ss_pred cccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcC------CCcccCCCcccccCccccccCCeEEE
Q psy17315 72 SKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKS------SAAAENFPFCTIDPNENNKVPAFLNV 145 (561)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~------~~~~~~~~~~T~~~~~~~~~~~~i~l 145 (561)
+..+.+............ .+.+++++|.||||||||||+|++. ...+++.||+|++... ...+..+.+
T Consensus 143 A~~g~gi~~L~~~I~~~~-----~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~-~~~~~~~~l 216 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYR-----EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE-IPLESGATL 216 (369)
T ss_dssp TTTTBTHHHHHHHHHHHH-----TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE-EECSTTCEE
T ss_pred CCCCCCHHHHHHHHHhhc-----ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE-EEeCCCeEE
Confidence 666655543221111111 2357999999999999999999987 3778999999998765 334556999
Q ss_pred EeCCCcccCCcccccccccccccc---ccCCEEEEEeccc
Q psy17315 146 VDIAGLVKGAAEGQGLGNAFLSHI---SACDAIFHLCKEK 182 (561)
Q Consensus 146 ~DtpG~~~~~~~~~~~~~~~l~~i---~~~D~il~VvD~~ 182 (561)
+||||+..+......+....+..+ +..|.+++++|+.
T Consensus 217 iDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~ 256 (369)
T 3ec1_A 217 YDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEG 256 (369)
T ss_dssp EECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTT
T ss_pred EeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCC
Confidence 999999876544445555665555 7889999999874
No 19
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.62 E-value=1.2e-16 Score=171.72 Aligned_cols=240 Identities=13% Similarity=0.074 Sum_probs=134.9
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC-Cc--cccccccC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR-PK--ADSKKKMG 77 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~-~~--~~~~~~~~ 77 (561)
.+.+|-|+|++.+ ++.....+.+. .-..++|.+ +|+.+.. ..+.+++. .+. .. +++..+.+
T Consensus 103 ad~il~VvD~~~~------~~~~d~~l~~~--l~~~~~pvilV~NK~D~~~~~--~~~~e~~~-lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 103 ADVIIFMVNGREG------VTAADEEVAKI--LYRTKKPVVLAVNKLDNTEMR--ANIYDFYS-LGFGEPYPISGTHGLG 171 (456)
T ss_dssp CSEEEEEEESSSC------SCHHHHHHHHH--HTTCCSCEEEEEECC-----------CCSGG-GSSSSEEECCTTTCTT
T ss_pred CCEEEEEEeCCCC------CChHHHHHHHH--HHHcCCCEEEEEECccchhhh--hhHHHHHH-cCCCceEEeecccccc
Confidence 4678999999998 66655555441 111355665 8887542 22222222 222 11 55555544
Q ss_pred CCCch-hhhHhhh----hcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCC
Q psy17315 78 PKKTD-EGEKKML----LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIA 149 (561)
Q Consensus 78 ~~~~~-~~~~~~~----~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~Dtp 149 (561)
....- ....... .......++|+++|.||||||||+|+|++.. ..++++||+|++..... ..+..+.+||||
T Consensus 172 v~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~ 251 (456)
T 4dcu_A 172 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTA 251 (456)
T ss_dssp HHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGG
T ss_pred hHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECC
Confidence 33311 1000000 1112356899999999999999999999887 77899999999876542 234579999999
Q ss_pred CcccCCccc----cccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccC
Q psy17315 150 GLVKGAAEG----QGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKK 222 (561)
Q Consensus 150 G~~~~~~~~----~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~ 222 (561)
|+....... .......+.+++.||++++|+|++.. ..+.-..+...+.+...+ |+||+|+.+
T Consensus 252 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~-----------~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 252 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG-----------IIEQDKRIAGYAHEAGKAVVIVVNKWDAVD 320 (456)
T ss_dssp GTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC-----------CCHHHHHHHHHHHHTTCEEEEEEECGGGSC
T ss_pred CCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC-----------cCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 987543211 11112234567899999999987631 011111222333333333 899999985
Q ss_pred cCCCCC-ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 223 KMGPKK-TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 223 ~~~~~~-~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...... .....+..........+.+.+||++|.|+..+++++.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 321 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 366 (456)
T ss_dssp CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHH
Confidence 433211 111223333344456789999999999999999999875
No 20
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.62 E-value=3.7e-16 Score=156.70 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=108.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccc--cccccccc---cc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEG--QGLGNAFL---SH 168 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~--~~~~~~~l---~~ 168 (561)
.++|+++|.||||||||+|+|++....++++||+|.+...+.. .+..+.++||||+....... ..+...+. -.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 4789999999999999999999998888999999988765422 34579999999997644211 01111111 12
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+.+|++++|+|++. . +....+..++.+...+ |+||+|+.+..+... ....+....+ .+
T Consensus 83 ~~~~d~ii~VvD~~~------------~-~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg----~~ 144 (274)
T 3i8s_A 83 SGDADLLINVVDASN------------L-ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRI-EIDALSARLG----CP 144 (274)
T ss_dssp HTCCSEEEEEEEGGG------------H-HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHT----SC
T ss_pred hcCCCEEEEEecCCC------------h-HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHH-HHHHHHHhcC----CC
Confidence 378999999998762 1 1112233445555544 899999986544322 2233333332 47
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+|+++|.|+..|++++.+...
T Consensus 145 ~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 145 VIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp EEECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999988643
No 21
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.61 E-value=8.7e-16 Score=156.04 Aligned_cols=157 Identities=21% Similarity=0.138 Sum_probs=106.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc-ccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE-GQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~-~~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|+|++.+ ..+++.|++|++...+.. .+.++.++||||+..+... +..+...+..+++.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999988 567889999988655422 3558999999999865421 112333445678999
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
|++++|+|++..- ... -..+.+.+... ..+ |+||+|+..... .....+..+ ......+
T Consensus 88 d~il~VvD~~~~~---------~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~---~~~~~~~ 150 (301)
T 1wf3_A 88 NAVVWVVDLRHPP---------TPE--DELVARALKPLVGKVPILLVGNKLDAAKYPE---EAMKAYHEL---LPEAEPR 150 (301)
T ss_dssp SEEEEEEETTSCC---------CHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHH---HHHHHHHHT---STTSEEE
T ss_pred CEEEEEEECCCCC---------ChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchH---HHHHHHHHh---cCcCcEE
Confidence 9999999986321 000 01122233332 222 899999974211 001112222 3344679
Q ss_pred EEEccCCCCHHHHHHHHHhhccC
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
++|+++|.|++.|++.+.+..+.
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCCB
T ss_pred EEeCCCCCCHHHHHHHHHHhccc
Confidence 99999999999999999987644
No 22
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=8.5e-16 Score=164.38 Aligned_cols=241 Identities=15% Similarity=0.100 Sum_probs=136.9
Q ss_pred CCCCceEEEeccCCCCCCCCccccCCCcccchhhhh--cCCCCc-----cCCCChHHHHHHHHHHHhcCC-Cc--ccccc
Q psy17315 5 HKKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILI--SDKPTW-----GDGDGPKAPKRRKQHLSDKLR-PK--ADSKK 74 (561)
Q Consensus 5 ~~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~--~~k~~l-----~DL~~~~~~~~w~~~l~~~~~-~~--~~~~~ 74 (561)
..+.+|-|+|++.+ .+..+..+.+ +. .++|.+ +|+.+......|.++ .+.+. .+ +++..
T Consensus 81 ~ad~il~V~D~~~~------~~~~d~~i~~----~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-~~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 81 EADLVLFVVDGKRG------ITKEDESLAD----FLRKSTVDTILVANKAENLREFEREVKPEL-YSLGFGEPIPVSAEH 149 (439)
T ss_dssp TCSEEEEEEETTTC------CCHHHHHHHH----HHHHHTCCEEEEEESCCSHHHHHHHTHHHH-GGGSSCSCEECBTTT
T ss_pred hCCEEEEEEECCCC------CCHHHHHHHH----HHHHcCCCEEEEEeCCCCccccHHHHHHHH-HhcCCCCEEEEeccC
Confidence 35778999999998 6655544444 22 356666 898643112222232 23333 22 67777
Q ss_pred ccCCCCch-hhhHh-hhhc----C---CCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCe
Q psy17315 75 KMGPKKTD-EGEKK-MLLG----R---VGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAF 142 (561)
Q Consensus 75 ~~~~~~~~-~~~~~-~~~~----~---~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~ 142 (561)
+.+....- ..... .... . ....++|+++|.||||||||+|+|++.. ..++++||+|+++..+. ..+..
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 66654421 11111 1011 1 2345899999999999999999999987 67899999999987653 23457
Q ss_pred EEEEeCCCcccCCccc-c--c--cccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---h
Q psy17315 143 LNVVDIAGLVKGAAEG-Q--G--LGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---V 214 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~-~--~--~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v 214 (561)
+.++||||+....... + . .....+.+++.+|++++|+|++.... ... ..+...+...... +
T Consensus 230 ~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~----------~~~-~~i~~~l~~~~~~~ilv 298 (439)
T 1mky_A 230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT----------RQD-QRMAGLMERRGRASVVV 298 (439)
T ss_dssp EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC----------HHH-HHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC----------HHH-HHHHHHHHHcCCCEEEE
Confidence 8999999985432211 0 0 11122456788999999998763110 011 1122233333333 8
Q ss_pred hccccccCcCCCCC-ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 215 DAKADSKKKMGPKK-TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 215 ~NK~D~~~~~~~~~-~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+||+|+.+...... .....+..........+.+.+||++|.|+..|++.+.+.
T Consensus 299 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 299 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp EECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred EECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 99999975322110 001112222233345678999999999999999999765
No 23
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.60 E-value=1.7e-16 Score=169.62 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=132.5
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChHHHHHHHHHHHhcCC-Cc--cccccccC
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLR-PK--ADSKKKMG 77 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~~~~~w~~~l~~~~~-~~--~~~~~~~~ 77 (561)
.+.+|-|+|++.+ .+.....+.+. .-..++|.+ +|+.+.+. ...+++ +.+. .+ +++..+.+
T Consensus 83 ad~il~vvD~~~~------~~~~d~~~~~~--l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 83 ADVIIFMVNGREG------VTAADEEVAKI--LYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp CSEEEEEEETTTC------SCHHHHHHHHH--HTTCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred CCEEEEEEeCCCC------CCHHHHHHHHH--HHHcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCC
Confidence 5678999999998 65544444330 011356666 89876431 111111 2222 22 66666655
Q ss_pred CCCchh-hhHhhhh-c---CCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCC
Q psy17315 78 PKKTDE-GEKKMLL-G---RVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIA 149 (561)
Q Consensus 78 ~~~~~~-~~~~~~~-~---~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~Dtp 149 (561)
....-. ....... . .....++|+++|.||||||||+|+|++.. ..++++||+|++..... ..+..+.+||||
T Consensus 152 v~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~ 231 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTA 231 (436)
T ss_dssp HHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHH
T ss_pred hHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECC
Confidence 443211 1110000 0 12345899999999999999999999987 56899999999875532 234579999999
Q ss_pred CcccCCccccccc----cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccC
Q psy17315 150 GLVKGAAEGQGLG----NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKK 222 (561)
Q Consensus 150 G~~~~~~~~~~~~----~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~ 222 (561)
|+.........+. ...+.+++.+|++++|+|++.... ..... +...+.+.... |+||+|+.+
T Consensus 232 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s----------~~~~~-~~~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 232 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII----------EQDKR-IAGYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp HHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC----------HHHHH-HHHHHHHTTCEEEEEEECGGGSC
T ss_pred CcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc----------HHHHH-HHHHHHHcCCcEEEEEECccCCC
Confidence 9975433211111 112356788999999999863211 11111 12223333333 899999985
Q ss_pred cCCCCC-ccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 223 KMGPKK-TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 223 ~~~~~~-~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...... .....+..........+.+.+||++|.|+..+++.+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 301 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp CCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 432210 011122333333445678999999999999999998875
No 24
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.59 E-value=1.4e-15 Score=151.23 Aligned_cols=154 Identities=24% Similarity=0.314 Sum_probs=108.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc--cccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~ 171 (561)
.++|+++|.||||||||||+|++....++++||+|.+...+.. .+..+.++||||....... .+.+...++.. ..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~ 83 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK-GD 83 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH-SC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh-cC
Confidence 4789999999999999999999988778999999988765432 2457999999999754431 11222333321 57
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+|++++|+|++..+ +.+ .+..++.+...+ ++||+|+.+..+... +...+...++ .+.+.
T Consensus 84 ~d~ii~V~D~t~~~------------~~~-~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg----~~vi~ 145 (258)
T 3a1s_A 84 ADLVILVADSVNPE------------QSL-YLLLEILEMEKKVILAMTAIDEAKKTGMKI-DRYELQKHLG----IPVVF 145 (258)
T ss_dssp CSEEEEEEETTSCH------------HHH-HHHHHHHTTTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHC----SCEEE
T ss_pred CCEEEEEeCCCchh------------hHH-HHHHHHHhcCCCEEEEEECcCCCCccchHH-HHHHHHHHcC----CCEEE
Confidence 89999999886311 111 133344444444 899999987665543 3334444333 47899
Q ss_pred EEccCCCCHHHHHHHHHhhc
Q psy17315 249 IVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~ 268 (561)
+|+++|.|+..|++++.+..
T Consensus 146 ~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 146 TSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHh
Confidence 99999999999999998753
No 25
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.58 E-value=6e-16 Score=125.69 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=71.5
Q ss_pred HHcccCceeccccCCCce----ecccc-CCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCC
Q psy17315 461 GYKSLQLQYFFTAGQDEV----KAWTI-QKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGR 535 (561)
Q Consensus 461 ~~~~l~li~~~t~~~~ev----~a~~~-~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~ 535 (561)
.|+.|+||.+||+.+++. ++.++ ++|+|+.|+|+.||+||.+.|.+|.||+.+- +..+|++|.
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~sa------------K~~~qrVgl 72 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSV------------KHNPQKVGK 72 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTS------------SSSSEEECS
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccc------------cCCCEECCC
Confidence 489999999999877763 88999 9999999999999999999999999999873 334699999
Q ss_pred ceeecCCCEEEEEecCC
Q psy17315 536 AYTVEDGDIIFFKFNAG 552 (561)
Q Consensus 536 ~~~~~d~di~~~~~~~~ 552 (561)
+|+|+|||||+|.-..+
T Consensus 73 dh~L~d~DVV~Iv~~~~ 89 (93)
T 2eki_A 73 DHTLEDEDVIQIVKKSG 89 (93)
T ss_dssp SCCCCSSEEECEEECCS
T ss_pred CcEecCCCEEEEEeCCC
Confidence 99999999999987644
No 26
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.58 E-value=2.4e-15 Score=161.90 Aligned_cols=154 Identities=27% Similarity=0.318 Sum_probs=107.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcc-cCCccccccc-ccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLV-KGAAEGQGLG-NAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~-~~~~~~~~~~-~~~l~~i 169 (561)
.+++|+++|.||||||||+|+|++.. ..++++||+|+++.... ..+..+.++||||+. ......+.++ ...+.++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 45899999999999999999999987 67899999999987652 234579999999997 5543333332 2346678
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
+.+|++++|+|++..... +..+.+ +.+ . ..+ |.||+|+.+. .....+..... ...+.
T Consensus 322 ~~aD~vl~VvD~s~~~s~----------~~~~il-~~l-~-~~piivV~NK~DL~~~-----~~~~~~~~~~~--~~~~~ 381 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDE----------EDRKIL-ERI-K-NKRYLVVINKVDVVEK-----INEEEIKNKLG--TDRHM 381 (482)
T ss_dssp HHCSEEEEEEETTSCCCH----------HHHHHH-HHH-T-TSSEEEEEEECSSCCC-----CCHHHHHHHHT--CSTTE
T ss_pred hcccEEEEEecCCCCCCH----------HHHHHH-HHh-c-CCCEEEEEECcccccc-----cCHHHHHHHhc--CCCcE
Confidence 999999999997642211 111211 112 1 122 8999999742 11223333221 12468
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+|+++|.|++.|+++|.+..
T Consensus 382 i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 382 VKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp EEEEGGGTCCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998864
No 27
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.56 E-value=4.6e-15 Score=139.31 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=104.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccc------ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEG------QGLGNAFLS 167 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~ 167 (561)
..++|+++|.+|||||||+|+|++.. ..+++.+++|..... ...+..+.++||||+....... ..+...++.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF-YLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEE-EEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEE-EEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 44799999999999999999999987 677888998887654 3345679999999975432110 112223344
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
....+|++++|+|++... . .....+...+.....+ |+||+|+....... .....+..........
T Consensus 101 ~~~~~~~vi~v~d~~~~~--------~---~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPP--------Q---DSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERA-KKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HCTTEEEEEEEEETTSCC--------C---HHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHHSSCCS
T ss_pred cCcCceEEEEEecCCCCC--------C---HHHHHHHHHHHHcCCCEEEEEEChhcCChHHHH-HHHHHHHHHHhhcCCC
Confidence 456679999999875211 0 0011122333333333 89999997432110 0111223333333456
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHHHHHh
Confidence 889999999999999999998763
No 28
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.56 E-value=8.6e-15 Score=134.67 Aligned_cols=152 Identities=21% Similarity=0.312 Sum_probs=96.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccc--cccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEG--QGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~i~~~ 172 (561)
.+|+++|.||||||||+|+|++....++.+|++|.+...+.. .+..+.++||||........ ..+...++. ..++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~ 82 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEKP 82 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH-HHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh-cCCC
Confidence 689999999999999999999987777888998887655422 24579999999987543211 111122221 1378
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
|++++|+|++..+ ....+..++.+...+ |+||+|+........ ....+....+ ...+.+
T Consensus 83 ~~~i~v~D~~~~~-------------~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~----~~~~~~ 144 (165)
T 2wji_A 83 DLVVNIVDATALE-------------RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI-DVDKLEKILG----VKVVPL 144 (165)
T ss_dssp SEEEEEEETTCHH-------------HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHT----SCEEEC
T ss_pred CEEEEEecCCchh-------------HhHHHHHHHHhcCCCEEEEEEchHhccccChhh-HHHHHHHHhC----CCEEEE
Confidence 9999999876311 111112223332333 899999975544332 2223332222 467999
Q ss_pred EccCCCCHHHHHHHHHhh
Q psy17315 250 VGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~ 267 (561)
|+++|.|+..+++++.+.
T Consensus 145 SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 145 SAAKKMGIEELKKAISIA 162 (165)
T ss_dssp BGGGTBSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 999999999999999875
No 29
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.56 E-value=6.5e-15 Score=158.45 Aligned_cols=159 Identities=19% Similarity=0.165 Sum_probs=84.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccc-cccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGL-GNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~i 169 (561)
+.+++|+++|.||||||||+|+|++.. ..++++||+|++..... ..+..+.+|||||+.......+.+ .......+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 356899999999999999999999986 77899999999976542 234579999999997543221111 13346678
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+.+|++++|+|++.... ..++....+.+..+... |.||+|+...... ..+.+... ...+
T Consensus 311 ~~aD~vl~VvD~s~~~s----------~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~------~~~~l~~~-~~~~ 373 (476)
T 3gee_A 311 AEADLILYLLDLGTERL----------DDELTEIRELKAAHPAAKFLTVANKLDRAANADA------LIRAIADG-TGTE 373 (476)
T ss_dssp SSCSEEEEEEETTTCSS----------GGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHH------HHHHHHHH-HTSC
T ss_pred ccCCEEEEEEECCCCcc----------hhhhHHHHHHHHhcCCCCEEEEEECcCCCCccch------hHHHHHhc-CCCc
Confidence 99999999999864221 11122222223332222 8999999743221 11112221 1256
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+|+++|.|++.|+++|.+...
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 899999999999999999988753
No 30
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.56 E-value=4e-15 Score=138.16 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=99.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccc-ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGL-GNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~i~ 170 (561)
.+.+|+++|.||||||||+|+|++.. ..++++|++|++..... ..+..+.++||||+......-... ....+..++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 45789999999999999999999877 56788999998765442 223468999999996533211100 111234578
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..... .....+ ..+.... .+ |+||+|+.+... .. ......
T Consensus 83 ~ad~~i~v~D~~~~~s~----------~~~~~~-~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~----------~~~~~~ 140 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAV----------DPAEIW-PEFIARLPAKLPITVVRNKADITGETL-GM----------SEVNGH 140 (172)
T ss_dssp TCSEEEEEEETTTCCCC----------SHHHHC-HHHHHHSCTTCCEEEEEECHHHHCCCC-EE----------EEETTE
T ss_pred hCCEEEEEEECCCCCCH----------HHHHHH-HHHHHhcccCCCEEEEEECccCCcchh-hh----------hhccCC
Confidence 99999999998643211 111111 1222221 12 899999964210 00 011234
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 141 ~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 141 ALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998864
No 31
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.56 E-value=1.6e-15 Score=146.25 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=104.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccc------ccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEG------QGLGN 163 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~------~~~~~ 163 (561)
..++|+++|.+|||||||+|+|++.. ..+++.||+|.+...... .+..+.+|||||+....... ..+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 45799999999999999999999986 578889999988654322 23579999999986542211 11222
Q ss_pred ccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 164 AFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 164 ~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
.++.....+|++++|+|++..- ...-..+...+.....+ |+||+|+........ ....+......
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~-----------~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~-~~~~~~~~l~~ 175 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPL-----------TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESIN-ALRATQKSLDA 175 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCC-----------CHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHH-HHHHHHHHHHH
T ss_pred HHHhcCcCcCEEEEEEeCCCCC-----------CHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHH-HHHHHHHHHHh
Confidence 3445556689999999875210 00001112223222223 899999974321100 01112222222
Q ss_pred ------cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 ------VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ------~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+.+|+++|.|+..|+++|.+..
T Consensus 176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 2455789999999999999999998874
No 32
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.55 E-value=2.8e-15 Score=156.43 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=109.5
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhhhcCCCCc-----cCCCChH----HHHHHHHH-HHhcCCC---c--cc
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPK----APKRRKQH-LSDKLRP---K--AD 71 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~~~k~~l-----~DL~~~~----~~~~w~~~-l~~~~~~---~--~~ 71 (561)
+.+|.|+|+++| ..+.++.+.+ +.+++|.+ +||.+.+ ..++|+++ ++..+.. + ++
T Consensus 71 ~~il~VvD~~d~------~~~~~~~l~~----~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 140 (368)
T 3h2y_A 71 ALVVKIVDIFDF------NGSWLPGLHR----FVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLIS 140 (368)
T ss_dssp CEEEEEEETTSH------HHHCCTTHHH----HSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred cEEEEEEECCCC------cccHHHHHHH----HhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEe
Confidence 478999999999 8999999988 67788877 9998754 57788755 4555552 2 56
Q ss_pred cccccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcC-------CCcccCCCcccccCccccccCCeEE
Q psy17315 72 SKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKS-------SAAAENFPFCTIDPNENNKVPAFLN 144 (561)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~-------~~~~~~~~~~T~~~~~~~~~~~~i~ 144 (561)
+..+.+........... ..+.+++++|.||||||||+|+|++. ...+++.||+|++... ...+..+.
T Consensus 141 A~~g~gi~~L~~~l~~~-----~~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~-~~~~~~~~ 214 (368)
T 3h2y_A 141 AAKGQGIAELADAIEYY-----RGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID-IPLDEESS 214 (368)
T ss_dssp TTTCTTHHHHHHHHHHH-----HTTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE-EESSSSCE
T ss_pred CCCCcCHHHHHhhhhhh-----cccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE-EEecCCeE
Confidence 66665554422111111 12367999999999999999999986 2457899999998765 33445699
Q ss_pred EEeCCCcccCCccccccccccccc---cccCCEEEEEeccc
Q psy17315 145 VVDIAGLVKGAAEGQGLGNAFLSH---ISACDAIFHLCKEK 182 (561)
Q Consensus 145 l~DtpG~~~~~~~~~~~~~~~l~~---i~~~D~il~VvD~~ 182 (561)
++||||+..+......+....+.. ....+.+++++|+.
T Consensus 215 liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~ 255 (368)
T 3h2y_A 215 LYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEE 255 (368)
T ss_dssp EEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTT
T ss_pred EEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCC
Confidence 999999986653333344333332 46678889999764
No 33
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.55 E-value=7.1e-15 Score=133.57 Aligned_cols=152 Identities=22% Similarity=0.220 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
++|+++|.+|||||||+|+|.+.. ..+.+.|++|.+..... ..+..+.++||||..........+...+...++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 579999999999999999999887 45678888888765432 234579999999987543211112233345678999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIV 250 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~is 250 (561)
++++|+|++... .... ..+.+.+.....+ |+||+|+.+.. .....+. .......+.+|
T Consensus 82 ~~i~v~d~~~~~--------~~~~---~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------~~~~~~~-~~~~~~~~~~S 142 (161)
T 2dyk_A 82 VVLFAVDGRAEL--------TQAD---YEVAEYLRRKGKPVILVATKVDDPKHE-------LYLGPLY-GLGFGDPIPTS 142 (161)
T ss_dssp EEEEEEESSSCC--------CHHH---HHHHHHHHHHTCCEEEEEECCCSGGGG-------GGCGGGG-GGSSCSCEECB
T ss_pred EEEEEEECCCcc--------cHhH---HHHHHHHHhcCCCEEEEEECcccccch-------HhHHHHH-hCCCCCeEEEe
Confidence 999999876311 0000 1122233332333 89999998542 1111222 22333679999
Q ss_pred ccCCCCHHHHHHHHHhh
Q psy17315 251 GVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 251 g~~~~Gks~l~~~l~~~ 267 (561)
+++|.|+..+++++.+.
T Consensus 143 a~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 143 SEHARGLEELLEAIWER 159 (161)
T ss_dssp TTTTBSHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHh
Confidence 99999999999999875
No 34
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.53 E-value=2.9e-14 Score=130.30 Aligned_cols=151 Identities=18% Similarity=0.095 Sum_probs=85.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc-ccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN-KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
.++|+++|.||||||||+|+|++.. ..+.+.+|+|....... .....+.++||||...... + ....++.+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~~~ 74 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW----L---PGHCMAMGD 74 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----------------------CC
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchh----h---hhhhhhhCC
Confidence 3689999999999999999999877 56667778776532211 1234688999999754331 1 223458899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcE
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLK 246 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (561)
++++|+|.+.. ..+..+..+...+.... .+ |+||+|+.+...... .....+... ...+.
T Consensus 75 ~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~-~~~~~ 140 (166)
T 3q72_A 75 AYVIVYSVTDK----------GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV---DEGRACAVV-FDCKF 140 (166)
T ss_dssp EEEEEEETTCH----------HHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH---HHHHHHHHH-TTCEE
T ss_pred EEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH---HHHHHHHHH-hCCcE
Confidence 99999987632 12333333333333321 12 899999986544322 222222222 22467
Q ss_pred EEEEccCCCCHHHHHHHHHhh
Q psy17315 247 VGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 247 i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+|+++|.|++.+++++.+.
T Consensus 141 ~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 141 IETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp EECBGGGTBSHHHHHHHHHHH
T ss_pred EEeccCCCCCHHHHHHHHHHH
Confidence 999999999999999999875
No 35
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.53 E-value=8.8e-15 Score=137.77 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=92.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCccc---c---ccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEG---Q---GLGNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~---~---~~~~~~l 166 (561)
..++|+++|.+|||||||+|+|++.. ..+++.+|+|...... ..+..+.+|||||+....... . .+...++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY-IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE-EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE-EECCcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 45899999999999999999999876 5677889988876542 335579999999975432110 0 1122333
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.....+|++++|+|++.... ..... +...+.....+ |+||+|+........ ....+.........
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~----------~~~~~-~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHAPS----------NDDVQ-MYEFLKYYGIPVIVIATKADKIPKGKWDK-HAKVVRQTLNIDPE 168 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCC----------HHHHH-HHHHHHHTTCCEEEEEECGGGSCGGGHHH-HHHHHHHHHTCCTT
T ss_pred hhhhcCCEEEEEEECCCCCC----------HHHHH-HHHHHHHcCCCEEEEEECcccCChHHHHH-HHHHHHHHHcccCC
Confidence 33445599999998763210 01111 12233333333 899999974322110 01122222222234
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+.+|+++|.|+..+++++.+.
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CceEEEEccCCCCHHHHHHHHHHH
Confidence 577999999999999999999865
No 36
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.52 E-value=1.6e-14 Score=146.81 Aligned_cols=159 Identities=19% Similarity=0.118 Sum_probs=105.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcc-cCCc-ccccccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLV-KGAA-EGQGLGNAFLSHISA 171 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~-~~~~-~~~~~~~~~l~~i~~ 171 (561)
..|+++|.||||||||+|+|++.. ..+++.|++|++...+. ..+.++.++||||+. .+.. .+..+.......++.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 479999999999999999999988 56788899998765542 234579999999986 3221 111233344667899
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+|++++|+|++. + ... -..+.+.+.....+ ++||+|..... ......+..+.........++
T Consensus 89 ~D~vl~Vvd~~~--~--------~~~--~~~i~~~l~~~~~P~ilvlNK~D~~~~~---~~~~~~l~~l~~~~~~~~~i~ 153 (301)
T 1ega_A 89 VELVIFVVEGTR--W--------TPD--DEMVLNKLREGKAPVILAVNKVDNVQEK---ADLLPHLQFLASQMNFLDIVP 153 (301)
T ss_dssp EEEEEEEEETTC--C--------CHH--HHHHHHHHHSSSSCEEEEEESTTTCCCH---HHHHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEEEeCCC--C--------CHH--HHHHHHHHHhcCCCEEEEEECcccCccH---HHHHHHHHHHHHhcCcCceEE
Confidence 999999998752 0 000 01122223222233 89999997310 011122333433334346899
Q ss_pred EEccCCCCHHHHHHHHHhhccC
Q psy17315 249 IVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~~~ 270 (561)
+|+.+|.|...|++.+.+..+.
T Consensus 154 iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 154 ISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CCTTTTTTHHHHHHHHHTTCCB
T ss_pred EECCCCCCHHHHHHHHHHhCCc
Confidence 9999999999999999987644
No 37
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.52 E-value=1.6e-14 Score=144.37 Aligned_cols=154 Identities=26% Similarity=0.291 Sum_probs=106.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccc--ccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG--QGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~i~~ 171 (561)
.++|+++|.||||||||+|+|+|....+++.||+|.+...+. ..+..+.++||||+....... ..+...++ ....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFI-LDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHH-HTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhh-hccC
Confidence 368999999999999999999998888889999998865542 234568999999997544311 11122222 1267
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
+|++++|+|++.. .+.+. +..++.+.. .+ ++||+|+.+..+.... ...+...++ .+.+
T Consensus 82 ~d~vi~v~D~~~~------------~~~~~-~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg----~~~~ 143 (271)
T 3k53_A 82 ADVIVDIVDSTCL------------MRNLF-LTLELFEMEVKNIILVLNKFDLLKKKGAKID-IKKMRKELG----VPVI 143 (271)
T ss_dssp CSEEEEEEEGGGH------------HHHHH-HHHHHHHTTCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHS----SCEE
T ss_pred CcEEEEEecCCcc------------hhhHH-HHHHHHhcCCCCEEEEEEChhcCcccccHHH-HHHHHHHcC----CcEE
Confidence 9999999987631 12222 223344444 33 8999998866554432 333433333 4789
Q ss_pred EEEccCCCCHHHHHHHHHhhc
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~ 268 (561)
++||++|.|+..+++.+.+..
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 999999999999999998763
No 38
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.52 E-value=1.1e-14 Score=156.03 Aligned_cols=156 Identities=21% Similarity=0.162 Sum_probs=95.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccc-ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGL-GNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~i~ 170 (561)
.+++|+++|.||||||||+|+|++.. ..+++.||+|++..... ..+..+.++||||+......-+.+ .......++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 46899999999999999999999886 66888999999875432 234578999999996543221111 133456789
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-cchhhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEE
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-RRSVDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGI 249 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~i 249 (561)
.+|++++|+|++.... ... ..+.+.+... ...|.||+|+........ +.......+.+.+
T Consensus 303 ~aD~vl~VvD~s~~~~----------~~~-~~i~~~l~~~piivV~NK~Dl~~~~~~~~--------~~~~~~~~~~i~i 363 (462)
T 3geh_A 303 TADLVLLTIDAATGWT----------TGD-QEIYEQVKHRPLILVMNKIDLVEKQLITS--------LEYPENITQIVHT 363 (462)
T ss_dssp SCSEEEEEEETTTCSC----------HHH-HHHHHHHTTSCEEEEEECTTSSCGGGSTT--------CCCCTTCCCEEEE
T ss_pred cCCEEEEEeccCCCCC----------HHH-HHHHHhccCCcEEEEEECCCCCcchhhHH--------HHHhccCCcEEEE
Confidence 9999999998763110 000 1111111110 111899999975433210 1111134568999
Q ss_pred EccCCCCHHHHHHHHHhhcc
Q psy17315 250 VGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 250 sg~~~~Gks~l~~~l~~~~~ 269 (561)
|+++|.|++.|+++|.+...
T Consensus 364 SAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 364 AAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp BTTTTBSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998753
No 39
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.52 E-value=6.2e-14 Score=129.75 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=97.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccC--CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVP--AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|+.|.+..... ..+ ..+.++||||..... ......++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 80 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR-------TITSTYYR 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS-------SCCGGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh-------hhHHHHhc
Confidence 4479999999999999999999988755555566655443221 112 368999999964322 22344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc--h---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR--S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+|++++|+|++.. ..+..+..+...+..... + |+||+|+.+...... .....+.... ..+
T Consensus 81 ~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~ 146 (181)
T 3tw8_B 81 GTHGVIVVYDVTSA----------ESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVET---EDAYKFAGQM-GIQ 146 (181)
T ss_dssp TCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCH---HHHHHHHHHH-TCC
T ss_pred cCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCH---HHHHHHHHHc-CCe
Confidence 89999999987632 122333323333333221 1 899999876543322 2222222222 237
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++.+..
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 147 LFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998763
No 40
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.52 E-value=2.3e-14 Score=139.17 Aligned_cols=165 Identities=18% Similarity=0.182 Sum_probs=99.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccc-c-ccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQG-L-GNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~-~-~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++....+.+.+++|++...... ....+.+|||||.......... + ...+....+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 107 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAH 107 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhc
Confidence 45899999999999999999999988557788898887655421 2357999999999643221110 0 011122357
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcC-CC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG-TN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~-~~ 244 (561)
.+|++++|+|++..... ....... +...+... ..+ |+||+|+.............+..+..... ..
T Consensus 108 ~~d~~i~v~d~~~~~s~-------~~~~~~~-~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
T 2qu8_A 108 INGVILFIIDISEQCGL-------TIKEQIN-LFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI 179 (228)
T ss_dssp SSEEEEEEEETTCTTSS-------CHHHHHH-HHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCE
T ss_pred cccEEEEEEecccccCc-------chHHHHH-HHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCc
Confidence 78999999988632211 1011111 11222222 222 89999998654433222223344433321 25
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|+++|.|+..++++|.+.
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHH
T ss_pred eEEEEecccCCCHHHHHHHHHHH
Confidence 67999999999999999999876
No 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.52 E-value=4.9e-14 Score=129.05 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=98.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.. ....+.+|++........ ....+.++||||..... ......++.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 78 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYRG 78 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh-------cccHhhCcC
Confidence 4789999999999999999999877 334555565543322111 22468999999984322 122344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++... .+..+..+.+.+...... |+||+|+.+..... ......+.... ...
T Consensus 79 ~~~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~---~~~~~~~~~~~-~~~ 144 (170)
T 1z0j_A 79 SAAAIIVYDITKEE----------TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM---ERDAKDYADSI-HAI 144 (170)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSC---HHHHHHHHHHT-TCE
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccC---HHHHHHHHHHc-CCE
Confidence 99999999876321 223333333334333222 67999998653332 22233332222 346
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++.+..
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH
Confidence 78999999999999999998864
No 42
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.51 E-value=9e-14 Score=127.42 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=93.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... .. ....+.++||||...... .....++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~ 77 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIYYR 77 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSST
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHHhc
Confidence 347899999999999999999998764333334333332211 11 123688999999643221 1233468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .++.+..+...+.... .+ |+||+|+.+..... ......+.... ..
T Consensus 78 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 143 (170)
T 1z08_A 78 DSNGAILVYDITDED----------SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS---IQEAESYAESV-GA 143 (170)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC---HHHHHHHHHHT-TC
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC---HHHHHHHHHHc-CC
Confidence 899999999876321 2222322222232221 11 89999998654332 22233332222 24
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 144 KHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998764
No 43
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=1.5e-13 Score=125.59 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=96.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|.+.... ..+.++.+........ ....+.++||||..... ......++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~ 75 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRN 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhcc
Confidence 368999999999999999999987733 3333443332221111 12368999999964322 123345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++... .+..+..+...+.... .+ ++||+|+.+..............+.... ...
T Consensus 76 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~ 144 (170)
T 1ek0_A 76 AQAALVVYDVTKPQ----------SFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK-GLL 144 (170)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-TCE
T ss_pred CcEEEEEEecCChH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc-CCE
Confidence 99999999876321 1222222222333221 11 8899999865433222223333332222 236
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 145 FFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
No 44
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=130.23 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=99.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-ccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|++|.+..... ..+ ..+.++||||..... ......++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 87 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYR 87 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHHHHT
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHHh
Confidence 4579999999999999999999987755555555554443221 112 368999999964322 12334568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .+..+..+...+..... + |+||+|+.+...... .....+.... ..
T Consensus 88 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~ 153 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQE----------SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY---TTAKEFADSL-GI 153 (196)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH---HHHHHHHHHT-TC
T ss_pred hCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH---HHHHHHHHHc-CC
Confidence 899999999876321 22333333333433321 1 899999975544332 2222222222 24
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++|.|+..++++|.+..
T Consensus 154 ~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 154 PFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998874
No 45
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=127.44 Aligned_cols=154 Identities=14% Similarity=0.049 Sum_probs=91.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.||||||||+|+|++.. ....+.+|+|........ ....+.++||||...... ..+. ...++.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~~~~---~~~~~~~ 78 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK--SWSQ---ESCLQGG 78 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---------CHHH---HHTTTSC
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccch--hhhH---HhhcccC
Confidence 4789999999999999999999877 445555666543222111 123688999999854211 1111 2345788
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+..+...+... ..+ |+||+|+.+...... .....+.... ...
T Consensus 79 ~~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~---~~~~~~~~~~-~~~ 144 (175)
T 2nzj_A 79 SAYVIVYSIADRG----------SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV---EEGRACAVVF-DCK 144 (175)
T ss_dssp SEEEEEEETTCHH----------HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH---HHHHHHHHHH-TSE
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCH---HHHHHHHHHc-CCe
Confidence 9999999876321 223333333334332 122 899999986543322 2222222221 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998763
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.48 E-value=1.3e-13 Score=127.56 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=95.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc----CCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV----PAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~----~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
..++|+++|.+|||||||+|+|++........|.++.+.... ... ...+.++||||...... .....+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~ 77 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK-------MLDKYI 77 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT-------THHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc-------hhhHHH
Confidence 457999999999999999999998763222222222222111 111 24799999999653321 223446
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh------cc---hhhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL------RR---SVDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~---~v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
+.+|++++|+|++..+ .++.+..+...+... .. -|+||+|+.+..... ......+...
T Consensus 78 ~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---~~~~~~~~~~ 144 (178)
T 2hxs_A 78 YGAQGVLLVYDITNYQ----------SFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK---PEKHLRFCQE 144 (178)
T ss_dssp TTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC---HHHHHHHHHH
T ss_pred hhCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC---HHHHHHHHHH
Confidence 8899999999876322 122333333333331 11 189999997543332 2222233222
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
. ....+.+|+++|.|+..++++|.+..+
T Consensus 145 ~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 145 N-GFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp H-TCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred c-CCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2 236799999999999999999998754
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=2.6e-13 Score=125.67 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=94.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCcccc-ccC---CeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNENN-KVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~~-~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
..++|+++|.+|||||||+|+|++... .....|.++.+..... ..+ ..+.++||||..... ......+
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~ 81 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYY 81 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHc
Confidence 457999999999999999999998773 2333444444332211 112 368999999964322 1234456
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
+.+|++++|+|++... .++.+..+...+..... + |+||+|+.+..... ......+.... .
T Consensus 82 ~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~ 147 (180)
T 2g6b_A 82 RDAHALLLLYDVTNKA----------SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVK---REDGEKLAKEY-G 147 (180)
T ss_dssp GGCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSC---HHHHHHHHHHH-T
T ss_pred cCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccC---HHHHHHHHHHc-C
Confidence 8899999999876321 22333333333333221 1 89999998643332 22222222222 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..+++++.+..
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998864
No 48
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=1.4e-13 Score=129.69 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=100.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++.. ....+.+|+|........ ....+.++||||..... ......++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 94 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH-------SLAPMYYR 94 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-------hhhHHhhc
Confidence 45799999999999999999999876 345666676654332111 22468999999964322 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .+..+..+...+.... .+ |+||+|+.+..... ......+.... ..
T Consensus 95 ~~d~iilV~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~---~~~~~~~~~~~-~~ 160 (192)
T 2fg5_A 95 GSAAAVIVYDITKQD----------SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP---LKDAKEYAESI-GA 160 (192)
T ss_dssp TCSEEEEEEETTCTH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHTT-TC
T ss_pred cCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC---HHHHHHHHHHc-CC
Confidence 899999999876322 2223333333343332 11 89999997533322 23333333322 24
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 679999999999999999999874
No 49
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.48 E-value=2.3e-13 Score=129.12 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=89.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
....+|+++|.+|||||||+|+|++.. ....+..+.+.... ...+..+.++||||...... .+...++.+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 93 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL--TIAGMTFTTFDLGGHIQARR-------VWKNYLPAI 93 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEE--EETTEEEEEEEECC----CC-------GGGGGGGGC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEE--EECCEEEEEEECCCcHhhHH-------HHHHHHhcC
Confidence 345799999999999999999999876 33333334332211 12235789999999754332 223456789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhc----
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV---- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~---- 241 (561)
|++++|+|++..+ .+..+......+... ..+ |+||+|+.+. .....+.......
T Consensus 94 d~~i~v~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~ 158 (198)
T 1f6b_A 94 NGIVFLVDCADHE----------RLLESKEELDSLMTDETIANVPILILGNKIDRPEA-----ISEERLREMFGLYGQTT 158 (198)
T ss_dssp SEEEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC-----CCHHHHHHHHTCTTTCC
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc-----CCHHHHHHHhCcccccc
Confidence 9999999886322 112222111122111 112 8999999751 1233344333211
Q ss_pred ------------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 ------------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ------------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+..++++|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 159 GKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 23457899999999999999999764
No 50
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.48 E-value=4.2e-13 Score=124.23 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=93.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-c----cCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-K----VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
..++|+++|.+|||||||+|+|++........|..+.+..... . ....+.++||||..... ......+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~ 79 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFY 79 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHh
Confidence 4579999999999999999999987643333343333322211 1 12368999999964322 1233456
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhh
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLG 239 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~ 239 (561)
+.+|++++|+|++... .+..+..+...+.... .+ |+||+|+....... .......+..
T Consensus 80 ~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v--~~~~~~~~~~ 147 (182)
T 1ky3_A 80 RGADCCVLVYDVTNAS----------SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV--SEKSAQELAK 147 (182)
T ss_dssp TTCCEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCS--CHHHHHHHHH
T ss_pred hcCCEEEEEEECCChH----------HHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccC--CHHHHHHHHH
Confidence 8899999999876321 2233333333333221 11 89999996432221 2233344443
Q ss_pred hcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 240 RVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 240 ~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.......+.+|+++|.|+..++++|.+..
T Consensus 148 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 148 SLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp HTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 34556789999999999999999998763
No 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.48 E-value=1.2e-13 Score=126.25 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=94.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+..+++........ ....+.++||||..... ......++.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~ 78 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYRG 78 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhccC
Confidence 478999999999999999999976622 2333444332222111 23468999999964322 123345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h-----hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S-----VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~-----v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++..+ .+..++.+...+..... . |+||+|+....... ......+... ....
T Consensus 79 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---~~~~~~~~~~-~~~~ 144 (170)
T 1r2q_A 79 AQAAIVVYDITNEE----------SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD---FQEAQSYADD-NSLL 144 (170)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHH-TTCE
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC---HHHHHHHHHH-cCCe
Confidence 99999999876321 12223323233333211 1 66999997543322 2222222222 2346
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998864
No 52
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.48 E-value=1.8e-13 Score=124.82 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=94.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++...... ++.++...... .. ....+.++||||...... .....++.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~ 74 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLYMKN 74 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCS-CCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHhcc
Confidence 36899999999999999999998653211 11121111111 11 123589999999754331 12234578
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .+..+..+.+.+... ..+ |+||+|+.+..... ......+.......
T Consensus 75 ~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~ 141 (167)
T 1c1y_A 75 GQGFALVYSITAQS----------TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG---KEQGQNLARQWCNC 141 (167)
T ss_dssp CSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC---HHHHHHHHHHTTSC
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC---HHHHHHHHHHccCC
Confidence 99999999876321 223333333333332 112 89999997543322 23334444444456
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+|+++|.|+..+++++.+.
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 142 AFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHH
T ss_pred cEEEecCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999875
No 53
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.48 E-value=3.3e-13 Score=128.40 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=98.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.++||||...... .....++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 79 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-------ITSSYYR 79 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-------CCGGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH-------HHHHhcc
Confidence 347999999999999999999998774444445444433221 1112 3689999999653321 2344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .+..+..+...+..... + |+||+|+.+..... ......+.... ..
T Consensus 80 ~~d~vilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 145 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQE----------SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE---YDVAKEFADAN-KM 145 (206)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC---HHHHHHHHHHT-TC
T ss_pred CCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC---HHHHHHHHHHc-CC
Confidence 899999999876321 22223333333333221 1 89999997543322 22223332222 34
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++|.|+..+++++.+..
T Consensus 146 ~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 146 PFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998864
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.47 E-value=3.3e-13 Score=123.46 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=93.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-cc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++........|.++.+..... .. ...+.++||||..... ......++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ 75 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR-------TITTAYYRG 75 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS-------CCCHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh-------hhHHHHhcc
Confidence 478999999999999999999987754444555554432221 11 2368999999964322 123345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++... .++.+..+...+.... .+ |+||+|+.++.. .......+..... .+
T Consensus 76 ~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~-~~ 140 (170)
T 1g16_A 76 AMGIILVYDITDER----------TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV----TADQGEALAKELG-IP 140 (170)
T ss_dssp EEEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS----CHHHHHHHHHHHT-CC
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCcc----CHHHHHHHHHHcC-Ce
Confidence 99999999876321 2233333333333332 12 899999943221 1222333332222 36
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..+++++.+..
T Consensus 141 ~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 141 FIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
No 55
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.47 E-value=1.6e-13 Score=125.27 Aligned_cols=153 Identities=18% Similarity=0.095 Sum_probs=95.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|.+........|..+.+.... .. ....+.++||||...... .....++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 76 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-------ITKAYYR 76 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-------CCHHHHT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-------HHHHHhc
Confidence 357899999999999999999998764333333333332221 11 123689999999653321 2234467
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh--cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL--RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
.+|++++|+|++..+ .++.+..+...+... ..+ |+||+|+.+..... ......+..... ..
T Consensus 77 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-~~ 142 (168)
T 1z2a_A 77 GAQACVLVFSTTDRE----------SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIK---NEEAEGLAKRLK-LR 142 (168)
T ss_dssp TCCEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSC---HHHHHHHHHHHT-CE
T ss_pred CCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccC---HHHHHHHHHHcC-Ce
Confidence 899999999876321 122333232333222 112 89999997543322 223333332222 36
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 143 ~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 143 FYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998764
No 56
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.47 E-value=2.4e-13 Score=126.04 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=95.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c-c--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N-K--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~-~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... . . ....+.++||||..... ......++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 83 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYR 83 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-------GGTHHHHT
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-------hhhHHHhc
Confidence 457999999999999999999998763332223222221111 1 1 12368999999964322 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .+..+..+...+..... + |+||+|+.+..... ......+.... ..
T Consensus 84 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 149 (181)
T 2efe_B 84 GAAAAIIVFDVTNQA----------SFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT---AEDAQTYAQEN-GL 149 (181)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC---HHHHHHHHHHT-TC
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC---HHHHHHHHHHc-CC
Confidence 899999999876321 12223333333333321 1 89999997543322 22333333222 34
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 150 FFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999875
No 57
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.47 E-value=2.7e-13 Score=125.20 Aligned_cols=152 Identities=15% Similarity=0.092 Sum_probs=95.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++........|.++.+.... ...+ ..+.++||||..... ......++.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 86 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRD 86 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGSHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH-------HHHHHHhcC
Confidence 37899999999999999999998764444445554443222 1112 368999999964322 122344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++... .+..+..+...+.... .+ |+||+|+.+...... .......... ...
T Consensus 87 ~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~ 152 (179)
T 2y8e_A 87 STVAVVVYDITNTN----------SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST---EEGERKAKEL-NVM 152 (179)
T ss_dssp CSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH---HHHHHHHHHH-TCE
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH---HHHHHHHHHc-CCe
Confidence 99999999876321 1222322222222221 11 899999975443321 2222222221 246
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 153 ~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 153 FIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998864
No 58
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.47 E-value=3.5e-13 Score=126.42 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=96.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++..... .+..|++....... .....+.++||||..... ......++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 93 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR-------TITTAYYR 93 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC-------CSGGGGGT
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh-------hhHHHhcc
Confidence 34799999999999999999999877322 23333333221111 122468999999964322 22345568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .+..+..+...+.... .+ |+||+|+.+..... ......+..... .
T Consensus 94 ~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-~ 159 (189)
T 2gf9_A 94 GAMGFLLMYDIANQE----------SFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVP---AEDGRRLADDLG-F 159 (189)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC---HHHHHHHHHHHT-C
T ss_pred CCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCC---HHHHHHHHHHcC-C
Confidence 899999999876321 2233333333444332 12 89999997543332 222333332222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 160 ~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 160 EFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998763
No 59
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.47 E-value=4.1e-13 Score=126.47 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=93.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
...+|+++|.||||||||+|+|++.. ....+..+.+.... ...+..+.++||||...... .....++.+|
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 92 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL--AIGNIKFTTFDLGGHIQARR-------LWKDYFPEVN 92 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEE--EETTEEEEEEECCCSGGGTT-------SGGGGCTTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEE--EECCEEEEEEECCCCHHHHH-------HHHHHHhcCC
Confidence 44689999999999999999999876 33333333332211 12235789999999854332 1234467899
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhc-----
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----- 241 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----- 241 (561)
++++|+|++..+ .++.+......+... ..+ |+||+|+.+. .....+.......
T Consensus 93 ~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~ 157 (190)
T 1m2o_B 93 GIVFLVDAADPE----------RFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-----VSEAELRSALGLLNTTGS 157 (190)
T ss_dssp EEEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-----CCHHHHHHHTTCSSCCC-
T ss_pred EEEEEEECCChH----------HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-----CCHHHHHHHhCCcccccc
Confidence 999999986422 122222222222211 111 8999999751 1233344433221
Q ss_pred ------CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 ------GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ------~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+..++++|.+.
T Consensus 158 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 158 QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp --CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 23357899999999999999999764
No 60
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.47 E-value=4.8e-13 Score=122.60 Aligned_cols=150 Identities=16% Similarity=0.124 Sum_probs=92.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..++|+++|.+|||||||+|+|++.. ....+..+.+.... ......+.++||||..... ......++.+|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 76 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETV--TYKNLKFQVWDLGGLTSIR-------PYWRCYYSNTD 76 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEE--EETTEEEEEEEECCCGGGG-------GGGGGGCTTCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEE--EECCEEEEEEECCCChhhh-------HHHHHHhccCC
Confidence 45799999999999999999998766 33233233222111 1224579999999975322 12334568999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh--c--C
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--V--G 242 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~--~ 242 (561)
++++|+|++..+. +..+. .+...+.. ...+ |+||+|+.+.. ....+...... . .
T Consensus 77 ~ii~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~ 141 (171)
T 1upt_A 77 AVIYVVDSCDRDR----------IGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-----TSSEMANSLGLPALKDR 141 (171)
T ss_dssp EEEEEEETTCCTT----------HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHHTGGGCTTS
T ss_pred EEEEEEECCCHHH----------HHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC-----CHHHHHHHhCchhccCC
Confidence 9999998763221 11111 11111211 1112 89999997532 12223222211 1 2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..+++++.+..
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 142 KWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 33678999999999999999998764
No 61
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=2.7e-13 Score=129.31 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=96.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ... ...+.++||||..... ......++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~ 97 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR-------SITQSYYR 97 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHGGGST
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHHh
Confidence 457999999999999999999998764433334433332221 111 2368999999964221 22345578
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .++.+..+...+..... + |+||+|+.+...... .....+... ...
T Consensus 98 ~~d~~i~v~D~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~---~~~~~~~~~-~~~ 163 (201)
T 2ew1_A 98 SANALILTYDITCEE----------SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQ---QRAEEFSEA-QDM 163 (201)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCH---HHHHHHHHH-HTC
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH---HHHHHHHHH-cCC
Confidence 999999999876322 22233333333333321 1 899999975443322 222222222 124
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 164 YYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998764
No 62
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.46 E-value=3.6e-13 Score=125.48 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=94.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ....+.+|.+.... ...+..+.++||||..... ......++.+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 89 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI--VINNTRFLMWDIGGQESLR-------SSWNTYYTNT 89 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEE--EETTEEEEEEEESSSGGGT-------CGGGGGGTTC
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEE--EECCEEEEEEECCCCHhHH-------HHHHHHhccC
Confidence 356899999999999999999999876 34445555443221 1234579999999985332 2234556899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh--c--
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--V-- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~-- 241 (561)
|++++|+|++..+ .+..+.. +...+.. ...+ |+||+|+.... ....+...... .
T Consensus 90 d~ii~v~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~~~~~~~~~ 154 (181)
T 2h17_A 90 EFVIVVVDSTDRE----------RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-----TVAEISQFLKLTSIKD 154 (181)
T ss_dssp CEEEEEEETTCTT----------THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCCS
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC-----CHHHHHHHhCcccccC
Confidence 9999999876321 1112211 1111211 1111 89999997421 22333333221 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+.+|+++|.|+..++++|.+.
T Consensus 155 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 155 HQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CceEEEEccCCCCcCHHHHHHHHHhh
Confidence 22367999999999999999999764
No 63
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.46 E-value=3.7e-13 Score=124.24 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=96.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.++||||..... ......++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 78 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR-------SLRTPFYR 78 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH-------HHHGGGGT
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhHHHHHh
Confidence 347899999999999999999998764433334333332111 1112 368999999964322 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
.+|++++|+|.+... .+..+..+...+.... .+ |+||+|+.++. ........+...
T Consensus 79 ~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~----~~~~~~~~~~~~ 144 (177)
T 1wms_A 79 GSDCCLLTFSVDDSQ----------SFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ----VSTEEAQAWCRD 144 (177)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS----SCHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc----cCHHHHHHHHHh
Confidence 899999999876321 2233333333333221 12 89999997321 123334444433
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
......+.+|+++|.|+..+++++.+...
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 145 NGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 44567899999999999999999988753
No 64
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.46 E-value=6.4e-13 Score=125.13 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=97.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
...++|+++|.+|||||||+|+|++..... .+..+.+...... ......+.++||||..... ......++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 93 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-------RLRPLSYA 93 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-------TTGGGGCT
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-------HHhHhhcc
Confidence 345899999999999999999999876321 2222221111000 0112347899999964322 22334568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcc--h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRR--S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~--~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|.+..+ .+..+ ..+...+..... + |+||+|+.+...... .......+.......
T Consensus 94 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 94 DSDVVLLCFAVNNRT----------SFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDV-TKQEGDDLCQKLGCV 162 (194)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCC-CHHHHHHHHHHHTCS
T ss_pred CCcEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcc-cHHHHHHHHHhcCCC
Confidence 899999999876322 22222 222333333321 1 899999985422211 233344444444444
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|+++|.|+..+++++.+....
T Consensus 163 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 163 AYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987543
No 65
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.46 E-value=3.9e-13 Score=124.22 Aligned_cols=150 Identities=10% Similarity=0.051 Sum_probs=97.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
....+|+++|.+|||||||+|+|++........|++|.+.... ...+..+.+|||||...... .....++.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 78 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT-------MRARGAQV 78 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC-------SCCSSCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH-------HHHHHHhh
Confidence 3567999999999999999999998876666677777665443 12345789999999754332 12345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcC------
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG------ 242 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~------ 242 (561)
+|++++|+|++... . ...++.+. .+.....+ |+||+|+.+. ....+........
T Consensus 79 ~d~~i~v~d~~~~~-------~---~~~~~~l~-~~~~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~ 141 (178)
T 2lkc_A 79 TDIVILVVAADDGV-------M---PQTVEAIN-HAKAANVPIIVAINKMDKPEA------NPDRVMQELMEYNLVPEEW 141 (178)
T ss_dssp CCEEEEEEETTCCC-------C---HHHHHHHH-HHGGGSCCEEEEEETTTSSCS------CHHHHHHHHTTTTCCBTTT
T ss_pred CCEEEEEEECCCCC-------c---HHHHHHHH-HHHhCCCCEEEEEECccCCcC------CHHHHHHHHHhcCcChhHc
Confidence 99999999875311 0 11111111 11111222 8999999742 1122222211111
Q ss_pred --CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 --TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 --~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.+|+++|.|+..++++|.+.
T Consensus 142 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 142 GGDTIFCKLSAKTKEGLDHLLEMILLV 168 (178)
T ss_dssp TSSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCcccEEEEecCCCCCHHHHHHHHHHh
Confidence 1367899999999999999999875
No 66
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=129.40 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=94.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ... ...+.++||||..... ......++
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~ 97 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------SITSAYYR 97 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH-------HHHHHHhc
Confidence 347899999999999999999998763322333333222211 111 2368999999964322 12344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .++.+..+.+.+..... + |+||+|+....... ......+.......
T Consensus 98 ~~d~iilV~D~~~~~----------s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~---~~~~~~~~~~~~~~ 164 (192)
T 2il1_A 98 SAKGIILVYDITKKE----------TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT---RQQGEKFAQQITGM 164 (192)
T ss_dssp HCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHTSTTC
T ss_pred CCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---HHHHHHHHHhcCCC
Confidence 899999999876322 22333333333433322 1 89999997544332 22333444433455
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 165 ~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 165 RFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 779999999999999999998763
No 67
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.46 E-value=5.1e-13 Score=126.81 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=97.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-cc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+..... .. ...+.++||||...... .....++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 79 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-------LGVAFYR 79 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-------SCCGGGT
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------hHHHHHh
Confidence 4579999999999999999999987743333344433322211 11 23689999999643221 2234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
.+|++++|+|++... .+..+..+...+.... .+ |+||+|+.++. ........+...
T Consensus 80 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~ 145 (207)
T 1vg8_A 80 GADCCVLVFDVTAPN----------TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ----VATKRAQAWCYS 145 (207)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC----SCHHHHHHHHHH
T ss_pred CCcEEEEEEECCCHH----------HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc----cCHHHHHHHHHh
Confidence 899999999876322 2233333333333221 12 89999997321 122333333332
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
......+.+|+++|.|+..++++|.+..
T Consensus 146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 KNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp TTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3455789999999999999999998874
No 68
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.46 E-value=1e-13 Score=129.64 Aligned_cols=154 Identities=21% Similarity=0.323 Sum_probs=101.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcc--cccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAE--GQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++....++.+|++|.+...+. ..+..+.++||||....... ...+...++.. ..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~-~~ 85 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN-EK 85 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH-HC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc-cC
Confidence 468999999999999999999998767778899887765442 23457999999998754321 01122222211 35
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEE
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVG 248 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~ 248 (561)
+|++++|+|++. +.....+...+.....+ ++||+|+........ ....+....+ ...+.
T Consensus 86 ~~~~i~v~d~~~-------------~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~----~~~~~ 147 (188)
T 2wjg_A 86 PDLVVNIVDATA-------------LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI-DVDKLEKILG----VKVVP 147 (188)
T ss_dssp CSEEEEEEEGGG-------------HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHT----SCEEE
T ss_pred CCEEEEEecchh-------------HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchH-HHHHHHHHhC----CCeEE
Confidence 899999998652 11122222233332223 899999986554432 2222322222 36899
Q ss_pred EEccCCCCHHHHHHHHHhhc
Q psy17315 249 IVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 249 isg~~~~Gks~l~~~l~~~~ 268 (561)
+|+++|.|+..+++++.+..
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHH
Confidence 99999999999999998874
No 69
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=1.4e-13 Score=125.98 Aligned_cols=152 Identities=17% Similarity=0.125 Sum_probs=93.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccC---CCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAEN---FPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~---~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.+|||||||+|+|++....... .+..+............+.++||||..... ......++.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 75 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLSISKG 75 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHhcccC
Confidence 478999999999999999999986632221 122222111111122368999999975322 1223345779
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
|++++|+|++..+ .++.+..+...+.+.. .+ |+||+|+.+...... .....+.... ..
T Consensus 76 ~~~i~v~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~---~~~~~~~~~~-~~ 141 (172)
T 2erx_A 76 HAFILVYSITSRQ----------SLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS---SEAEALARTW-KC 141 (172)
T ss_dssp SEEEEEEETTCHH----------HHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH---HHHHHHHHHH-TC
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCH---HHHHHHHHHh-CC
Confidence 9999999876322 2233333333333321 22 899999976544322 1222222221 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 142 AFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred eEEEecCCCCcCHHHHHHHHHHHH
Confidence 678999999999999999998863
No 70
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.46 E-value=3e-13 Score=126.11 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=97.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.++||||..... ......++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 81 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR-------SVTRSYYR 81 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTST
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHHh
Confidence 347999999999999999999998774444444444332221 1112 368999999964322 22345578
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .+..+..+...+..... + |+||+|+....... ......+... ...
T Consensus 82 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~-~~~ 147 (186)
T 2bme_A 82 GAAGALLVYDITSRE----------TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT---FLEASRFAQE-NEL 147 (186)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHH-TTC
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---HHHHHHHHHH-cCC
Confidence 899999999876322 22233333333333221 1 89999997543332 1222222222 234
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 148 ~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 148 MFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998764
No 71
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=3.6e-13 Score=126.13 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=93.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ....+..+.+.... ...+..+.++||||...... .....++.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 84 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI--VINNTRFLMWDIGGQESLRS-------SWNTYYTNT 84 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEE--EETTEEEEEEECCC----CG-------GGHHHHTTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEE--EECCEEEEEEECCCCHhHHH-------HHHHHhcCC
Confidence 456899999999999999999999766 33333333322211 12345799999999854321 223446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhh--c--
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--V-- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~-- 241 (561)
|++++|+|++..+ .+..+......+... ..+ |+||+|+.+.. ....+...... .
T Consensus 85 d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~~~~~~~~~ 149 (187)
T 1zj6_A 85 EFVIVVVDSTDRE----------RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-----TVAEISQFLKLTSIKD 149 (187)
T ss_dssp CEEEEEEETTCTT----------THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHHTGGGCCS
T ss_pred CEEEEEEeCCCHH----------HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC-----CHHHHHHHhChhhhcC
Confidence 9999999886322 112222221222211 111 89999997421 22333332221 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.....+.+|+++|.|+..++++|.+...
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 150 HQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred CCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 2336789999999999999999998753
No 72
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.45 E-value=2.7e-13 Score=127.56 Aligned_cols=154 Identities=13% Similarity=0.098 Sum_probs=95.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++..... .+..|.+....... .....+.++||||..... ......+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~ 95 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR-------AITSAYY 95 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC-------TTHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHh
Confidence 345799999999999999999999876322 22223222211111 123468999999985432 1223446
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
+.+|++++|+|++... .+..+..+...+.... .+ |+||+|+....... ......+... ..
T Consensus 96 ~~~d~vi~v~D~~~~~----------s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~-~~ 161 (193)
T 2oil_A 96 RGAVGALLVFDLTKHQ----------TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP---TEEARMFAEN-NG 161 (193)
T ss_dssp TTCCEEEEEEETTCHH----------HHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHH-TT
T ss_pred ccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC---HHHHHHHHHH-cC
Confidence 8899999999876321 1222222223333221 11 89999998643322 2222333222 23
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..++++|.+..
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 162 LLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998763
No 73
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.45 E-value=2.6e-13 Score=126.84 Aligned_cols=155 Identities=17% Similarity=0.094 Sum_probs=97.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccCCeEEEEeCCCcccCCccc----c---ccccccccc-
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEG----Q---GLGNAFLSH- 168 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~----~---~~~~~~l~~- 168 (561)
++|+++|.+|||||||+|+|++....++..|++|........ . .+.++||||+....... + .+...++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~-~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW-K-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE-T-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec-C-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999988777888998887654322 2 69999999975322110 0 111122332
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHH---------HHHHHHHHhcch---hhccccccCcCCCCCccHHHHHH
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLK---------LLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKM 236 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~---------~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~ 236 (561)
...++++++|+|+...+ .....+. .+...+.....+ |+||+|+.... ......
T Consensus 80 ~~~~~~v~~v~d~~s~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~~ 144 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAP---------EIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV------QEVINF 144 (190)
T ss_dssp GGGCCEEEEEEETTHHH---------HHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH------HHHHHH
T ss_pred hccCCEEEEEEcchhhh---------hHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH------HHHHHH
Confidence 55678888888764210 0000000 011122222223 89999997532 223333
Q ss_pred HhhhcCCC------cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 237 LLGRVGTN------LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~~~~------~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+....... ..+.+|+++|.|+..+++++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 145 LAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 33333322 468999999999999999998764
No 74
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.45 E-value=1.2e-12 Score=124.16 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=95.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++........|.++......... ...+.++||||...... .....++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 96 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPD 96 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTT-------TGGGGCTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHH-------HHHHhcCC
Confidence 457999999999999999999998764322233333322111112 23689999999643221 12335688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHh--cch---hhccccccCcCCC---------CCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDL--RRS---VDAKADSKKKMGP---------KKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~--~~~---v~NK~D~~~~~~~---------~~~~~~~l~~ 236 (561)
+|++++|+|.+..+ .+..+ ..+...+... ..+ |+||+|+.+.... ..........
T Consensus 97 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 97 TDVILMCFSIDSPD----------SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 99999999875321 22222 2223333332 222 8999999754110 0111222233
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.........+.+|+++|.|+..++++|.+..
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 167 MANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33333444678999999999999999998764
No 75
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.45 E-value=2.9e-13 Score=126.39 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=94.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ..+.+.+|.+..... ..+..+.++||||..... ..+...++.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~--~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 84 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ--SQGFKLNVWDIGGQRKIR-------PYWRSYFENT 84 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEE--ETTEEEEEEECSSCGGGH-------HHHHHHHTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEE--ECCEEEEEEECCCCHHHH-------HHHHHHhCCC
Confidence 356899999999999999999999876 334445554432221 224579999999974322 2234456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhh----c
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----V 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~ 241 (561)
|++++|+|++..+ .+..+.. +.+.+... ..+ |+||+|+.+... ...+...... .
T Consensus 85 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~ 149 (181)
T 1fzq_A 85 DILIYVIDSADRK----------RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP-----ASEIAEGLNLHTIRD 149 (181)
T ss_dssp SEEEEEEETTCGG----------GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC-----HHHHHHHTTGGGCCS
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC-----HHHHHHHhCchhccC
Confidence 9999999876322 1111111 11111111 111 899999975321 2223222221 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..+++++.+..
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 150 RVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred CceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 233578999999999999999998764
No 76
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.45 E-value=5.5e-13 Score=125.64 Aligned_cols=150 Identities=18% Similarity=0.185 Sum_probs=94.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC-cc--cCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA-AA--ENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~-~~--~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
...+|+++|.+|||||||+|+|++... .+ .+..|.+.... ......+.+|||||..... ......++.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 86 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF--EKGRVAFTVFDMGGAKKFR-------GLWETYYDN 86 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE--EETTEEEEEEEECCSGGGG-------GGGGGGCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE--EeCCEEEEEEECCCCHhHH-------HHHHHHHhc
Confidence 457999999999999999999998873 22 44444433321 2234579999999985432 222345689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHH-HHHHHHH--h--------cch---hhccccccCcCCCCCccHHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRD--L--------RRS---VDAKADSKKKMGPKKTDEGEKKML 237 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~--~--------~~~---v~NK~D~~~~~~~~~~~~~~l~~l 237 (561)
+|++++|+|++..+ .+..+.. +...+.. . ..+ |+||+|+..... ...+...
T Consensus 87 ~d~ii~v~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----~~~~~~~ 151 (199)
T 4bas_A 87 IDAVIFVVDSSDHL----------RLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-----AAELVEI 151 (199)
T ss_dssp CSEEEEEEETTCGG----------GHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-----HHHHHHH
T ss_pred CCEEEEEEECCcHH----------HHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-----HHHHHHH
Confidence 99999999886422 1222221 1111111 1 222 899999985421 2222222
Q ss_pred hh-----hcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 238 LG-----RVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 238 ~~-----~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.. .......+.+|+++|.|+..++++|.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 152 LDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 21 11344678999999999999999998864
No 77
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=5e-13 Score=124.17 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=92.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ....+..|.+.... ...+..+.++||||...... .....++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 86 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL--SYKNLKLNVWDLGGQTSIRP-------YWRCYYADT 86 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEE--EETTEEEEEEEEC----CCT-------TGGGTTTTE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEE--EECCEEEEEEECCCCHhHHH-------HHHHHhccC
Confidence 456899999999999999999999766 33444444332211 12246789999999864332 233456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-------ch---hhccccccCcCCCCCccHHHHHHHhhhc-
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-------RS---VDAKADSKKKMGPKKTDEGEKKMLLGRV- 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~- 241 (561)
|++++|+|++..+ .++.+...+.... .+ |+||+|+.+.. ....+.......
T Consensus 87 d~ii~v~d~~~~~-------------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~i~~~~~~~~ 148 (183)
T 1moz_A 87 AAVIFVVDSTDKD-------------RMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-----SASEVSKELNLVE 148 (183)
T ss_dssp EEEEEEEETTCTT-------------THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-----CHHHHHHHTTTTT
T ss_pred CEEEEEEECCCHH-------------HHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC-----CHHHHHHHhCccc
Confidence 9999999876321 1122222222221 11 89999997431 223333333221
Q ss_pred ---CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 ---GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ---~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+.++++++.+..
T Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 149 LKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp CCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 223579999999999999999998753
No 78
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.45 E-value=3.1e-13 Score=124.72 Aligned_cols=153 Identities=17% Similarity=0.085 Sum_probs=95.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++.... ..+..+.+........ ....+.++||||..... ......++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 86 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------AVTRSYYR 86 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------HHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-------hhHHHHhc
Confidence 3479999999999999999999987632 2222332222111111 12368999999964322 22344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .++.+..+...+...... |+||+|+.+..... ......+.... ..
T Consensus 87 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 152 (179)
T 1z0f_A 87 GAAGALMVYDITRRS----------TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT---YEEAKQFAEEN-GL 152 (179)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC---HHHHHHHHHHT-TC
T ss_pred cCCEEEEEEeCcCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---HHHHHHHHHHc-CC
Confidence 899999999876321 223333333333333211 89999997543332 22333333222 24
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 153 LFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998764
No 79
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.44 E-value=1.1e-12 Score=123.55 Aligned_cols=152 Identities=17% Similarity=0.105 Sum_probs=91.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--c--ccC------------------------------
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--N--KVP------------------------------ 140 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~--~~~------------------------------ 140 (561)
..++|+++|.+|||||||+|+|++........|.++.+.... . ...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 458999999999999999999998763322222221111110 0 000
Q ss_pred -------CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-c
Q psy17315 141 -------AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-R 212 (561)
Q Consensus 141 -------~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~ 212 (561)
..+.+|||||..... ......++.+|++++|+|++... .+..+..+...+.... .
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~----------s~~~~~~~~~~i~~~~~~ 148 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSN----------TLDRAKTWVNQLKISSNY 148 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCC
T ss_pred ccCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHH----------HHHHHHHHHHHHHhhCCC
Confidence 568999999964322 12334568899999999876321 1222222222333221 2
Q ss_pred h---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 213 S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 213 ~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+ |+||+| ...... .......+.... ....+.+|+++|.|+..++++|.+..
T Consensus 149 piilv~NK~D-~~~~~~---~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 149 IIILVANKID-KNKFQV---DILEVQKYAQDN-NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp EEEEEEECTT-CC-CCS---CHHHHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEEECCC-cccccC---CHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 2 999999 322111 223333333322 34789999999999999999998753
No 80
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.44 E-value=5e-13 Score=125.65 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=93.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.++||||...... .....++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~ 92 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-------ITRSYYR 92 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-------CCHHHHT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh-------hHHHHhc
Confidence 347999999999999999999998774333333333222211 1112 3689999999653321 2234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .++.+..+...+.... .+ |+||+|+.+..... ......+.... ..
T Consensus 93 ~~d~ii~v~d~~~~~----------s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~~~~~-~~ 158 (191)
T 2a5j_A 93 GAAGALLVYDITRRE----------TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK---REEGEAFAREH-GL 158 (191)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC---HHHHHHHHHHH-TC
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccC---HHHHHHHHHHc-CC
Confidence 899999999876321 2233333333333321 11 89999997543332 22222222222 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 159 IFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998763
No 81
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.44 E-value=1.5e-13 Score=127.96 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=74.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|.++.+.... ... ...+.++||||...... .....++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 79 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYR 79 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh-------hHHHHHh
Confidence 347899999999999999999997764434445444433221 111 24689999999753321 1234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .++.+..+...+.... .+ |+||+|+.+..... ......+..... .
T Consensus 80 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-~ 145 (183)
T 2fu5_C 80 GAMGIMLVYDITNEK----------SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS---KERGEKLALDYG-I 145 (183)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSC---HHHHHHHHHHHT-C
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCC---HHHHHHHHHHcC-C
Confidence 899999999876321 2223332333333321 12 89999997543322 222233322222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 146 ~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 146 KFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp EEEECCC---CCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998763
No 82
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.44 E-value=4.8e-13 Score=127.62 Aligned_cols=152 Identities=15% Similarity=0.136 Sum_probs=97.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|.++.+.... ...+ ..+.+|||||..... ......++
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 91 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR-------TITTAYYR 91 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT-------CCCHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhc
Confidence 458999999999999999999998775445555555443322 1112 368999999965322 12344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++... .+..+..+...+.... .+ |+||+|+.++. . .......+..... .
T Consensus 92 ~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~---~~~~~~~~~~~~~-~ 156 (213)
T 3cph_A 92 GAMGIILVYDVTDER----------TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-V---TADQGEALAKELG-I 156 (213)
T ss_dssp TCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-S---CHHHHHHHHHHHT-C
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-c---CHHHHHHHHHHcC-C
Confidence 899999999876321 2233333333333322 12 89999994321 1 1222333322222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++|.|+..++++|.+..
T Consensus 157 ~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 157 PFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp CEEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998764
No 83
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.43 E-value=6.4e-13 Score=124.72 Aligned_cols=155 Identities=12% Similarity=0.077 Sum_probs=97.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcc-c-----------CCCcccccCccc---cccCCeEEEEeCCCcccCCcccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAA-E-----------NFPFCTIDPNEN---NKVPAFLNVVDIAGLVKGAAEGQ 159 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~-~-----------~~~~~T~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~ 159 (561)
..++|+++|.+|||||||+|.|.+..... . +..|.+...... ......+.++||||......
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--- 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA--- 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH---
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH---
Confidence 34799999999999999999998765211 1 111111111110 01123689999999753321
Q ss_pred ccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-----h---hhccccccCcCCCCCccH
Q psy17315 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-----S---VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 160 ~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~---v~NK~D~~~~~~~~~~~~ 231 (561)
.....++++|++++|+|++... .......++.+..++.+... + |+||+|+.+. ...
T Consensus 90 ----~~~~~~~~~d~~i~v~D~~~~~-------~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~-----~~~ 153 (198)
T 3t1o_A 90 ----SRKLILRGVDGIVFVADSAPNR-------LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA-----LPV 153 (198)
T ss_dssp ----HHHHHTTTCCEEEEEEECCGGG-------HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-----CCH
T ss_pred ----HHHHHHhcCCEEEEEEECCcch-------hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-----cCH
Confidence 2234568999999999876211 11122333444445554421 1 8999999753 233
Q ss_pred HHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 232 GEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 232 ~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+...+.........+.+|+++|.|+..++++|.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 154 EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp HHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 4455555544444789999999999999999998763
No 84
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.43 E-value=3.3e-13 Score=142.50 Aligned_cols=156 Identities=25% Similarity=0.402 Sum_probs=112.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc-c--CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK-V--PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~-~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
....|+++|+||||||||+|+|++....++++|++|..++.+.. . ...+.++||||+........++...|+.++..
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 34579999999999999999999988778899999998876532 2 25689999999987655555566677778888
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhc--
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRV-- 241 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~-- 241 (561)
+|.+++|+|.+ .....++.....++..+. .+ ++||+|.... ..+..+....
T Consensus 236 a~~lL~vvDls-----------~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--------~~~~~l~~~l~~ 296 (416)
T 1udx_A 236 TRVLLYVLDAA-----------DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--------EAVKALADALAR 296 (416)
T ss_dssp SSEEEEEEETT-----------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--------HHHHHHHHHHHT
T ss_pred HHhhhEEeCCc-----------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--------HHHHHHHHHHHh
Confidence 99999999864 112333444444444332 12 8899999732 2233332222
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.....+.+|+.++.|+..|++++.+...
T Consensus 297 ~g~~vi~iSA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 297 EGLAVLPVSALTGAGLPALKEALHALVR 324 (416)
T ss_dssp TTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCccCHHHHHHHHHHHHH
Confidence 1346899999999999999999988753
No 85
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.43 E-value=9.8e-13 Score=123.22 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=92.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ....+..+.+.... ......+.++||||...... .....++.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~ 90 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETL--QYKNISFEVWDLGGQTGVRP-------YWRCYFSDT 90 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEE--EETTEEEEEEEECCSSSSCC-------CCSSSSTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEE--EECCEEEEEEECCCCHhHHH-------HHHHHhhcC
Confidence 456899999999999999999998766 22222222221111 12345799999999854332 223456899
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhh----c
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----V 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~ 241 (561)
|++++|+|++..+ .+..+. .+...+... ..+ |+||+|+.+.. ....+...... .
T Consensus 91 d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~ 155 (189)
T 2x77_A 91 DAVIYVVDSTDRD----------RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA-----SEAEIAEQLGVSSIMN 155 (189)
T ss_dssp CEEEEEEETTCCT----------THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCCS
T ss_pred CEEEEEEeCCCHH----------HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC-----CHHHHHHHhChhhccC
Confidence 9999999886322 111111 111111111 112 89999997432 12233322221 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..+++++.+..
T Consensus 156 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 156 RTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCccCHHHHHHHHHHHH
Confidence 223578999999999999999998864
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.43 E-value=1.1e-12 Score=123.21 Aligned_cols=152 Identities=19% Similarity=0.151 Sum_probs=93.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
...++|+++|.+|||||||+|+|++.......+ ..|.+.... ...+..+.++||||..... ......+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 90 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYR-------NLWEHYYKE 90 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSSCEEEEEEECCSTTTG-------GGGGGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECCEEEEEEECCCCHHHH-------HHHHHHHhc
Confidence 345899999999999999999999876211111 122222111 1224579999999965332 223345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHH-HHHHHHh-----cch---hhccccccCcCCCCCccHHHHHHHhh--h
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLL-ETRIRDL-----RRS---VDAKADSKKKMGPKKTDEGEKKMLLG--R 240 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~-----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~--~ 240 (561)
+|++++|+|++..+ .+..+... ...+... ..+ |+||+|+.... ....+..... .
T Consensus 91 ~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~ 155 (190)
T 2h57_A 91 GQAIIFVIDSSDRL----------RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV-----TSVKVSQLLCLEN 155 (190)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC-----CHHHHHHHHTGGG
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC-----CHHHHHHHhChhh
Confidence 99999999876321 12222222 2222221 122 89999997421 2233333322 1
Q ss_pred c--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 V--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
. .....+.+|+++|.|+..++++|.+..
T Consensus 156 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 156 IKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 1 234678999999999999999998863
No 87
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.43 E-value=6.3e-13 Score=123.43 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=94.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++... ...++.++...... .... ..+.++||||...... .....++.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 77 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI-------FPQTYSID 77 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC-------CCGGGTTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH-------HHHHHHhc
Confidence 47899999999999999999996652 22222222221111 1112 3578999999754321 12344678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .++.+..+...+.... .+ |+||+|+.+..... ......+.... ..
T Consensus 78 ~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 143 (181)
T 3t5g_A 78 INGYILVYSVTSIK----------SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS---YEEGKALAESW-NA 143 (181)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSC---HHHHHHHHHHT-TC
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceec---HHHHHHHHHHh-CC
Confidence 99999999876322 2233333333332221 12 89999997543332 22333333322 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|+++|.|+..+++++.+....
T Consensus 144 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 144 AFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp EEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999987543
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.43 E-value=8e-13 Score=123.40 Aligned_cols=151 Identities=13% Similarity=0.056 Sum_probs=93.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
...++|+++|.+|||||||+|+|++.. ....+..+.+.... ...+..+.++||||..... ......++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 86 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTL--EHRGFKLNIWDVGGQKSLR-------SYWRNYFEST 86 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEE--EETTEEEEEEEECCSHHHH-------TTGGGGCTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEE--EECCEEEEEEECCCCHhHH-------HHHHHHhcCC
Confidence 356899999999999999999999876 22233333332211 1234579999999985322 1223456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhh----c
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----V 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~ 241 (561)
|++++|+|++..+ .+..+......+... ..+ |+||+|+.+.. ....+...... .
T Consensus 87 d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~ 151 (186)
T 1ksh_A 87 DGLIWVVDSADRQ----------RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL-----SCNAIQEALELDSIRS 151 (186)
T ss_dssp SEEEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCCS
T ss_pred CEEEEEEECcCHH----------HHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC-----CHHHHHHHhChhhccC
Confidence 9999999876322 112222111122111 111 89999997532 22233332221 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..+++++.+..
T Consensus 152 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 152 HHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 234679999999999999999998864
No 89
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.43 E-value=4.5e-13 Score=127.03 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=95.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+..|.+....... .....+.+|||||..... ......++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 80 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR-------TITTAYYRG 80 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc-------chHHHhhcC
Confidence 478999999999999999999987632 223333333221111 112468999999975322 123455688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|++..+ .++.+..+...+.... .+ |+||+|+.+..... ......+..... ..
T Consensus 81 ~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-~~ 146 (203)
T 1zbd_A 81 AMGFILMYDITNEE----------SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS---SERGRQLADHLG-FE 146 (203)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSC---HHHHHHHHHHHT-CE
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccC---HHHHHHHHHHCC-Ce
Confidence 99999999876321 2233333333343322 11 89999997543332 222333332222 36
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+++|.|+..++++|.+..
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998763
No 90
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.43 E-value=3.9e-13 Score=127.61 Aligned_cols=154 Identities=13% Similarity=0.073 Sum_probs=91.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.++||||..... ......+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~ 95 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR-------SVTRSYY 95 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHS-------CCCHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHH-------HHHHHHh
Confidence 3458999999999999999999998764433344444332221 1112 478999999964322 1233456
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
+.+|++++|+|++... .++.+..+...+.... .+ |+||+|+........ .....+... ..
T Consensus 96 ~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~~~-~~ 161 (200)
T 2o52_A 96 RGAAGALLVYDITSRE----------TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF---LEASRFAQE-NE 161 (200)
T ss_dssp TTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH---HHHHHHHHH-TT
T ss_pred ccCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH---HHHHHHHHH-cC
Confidence 8899999999876322 2223333323333322 11 899999975433321 222222222 23
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..++++|.+..
T Consensus 162 ~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 162 LMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998764
No 91
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.43 E-value=4.3e-13 Score=125.87 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=92.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
...++|+++|.+|||||||+|+|++.... ..+..+.+.... ......+.++||||..... ......++.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 90 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI--TKGNVTIKLWDIGGQPRFR-------SMWERYCRG 90 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE--EETTEEEEEEEECCSHHHH-------TTHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE--EeCCEEEEEEECCCCHhHH-------HHHHHHHcc
Confidence 34589999999999999999999987632 223333332211 2234579999999975322 122344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHH---hcch---hhccccccCcCCCCCccHHHHHHHhhh----
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRD---LRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR---- 240 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~---~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~---- 240 (561)
+|++++|+|++..+ .+..+. .+...+.. ...+ |+||+|+.+.. ....+......
T Consensus 91 ~d~ii~v~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~ 155 (188)
T 1zd9_A 91 VSAIVYMVDAADQE----------KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-----DEKELIEKMNLSAIQ 155 (188)
T ss_dssp CSEEEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-----CHHHHHHHTTGGGCC
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-----CHHHHHHHhChhhhc
Confidence 99999999876322 111121 11112211 1111 89999997532 12222222211
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
......+.+|+++|.|+..++++|.+..
T Consensus 156 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 156 DREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1233568999999999999999998864
No 92
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.43 E-value=3.1e-13 Score=122.98 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=91.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.||||||||+|+|++..... .++.++...... .. ....+.++||||...... .....++.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~ 74 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-------MRDLYIKN 74 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-------HHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHhcc
Confidence 3689999999999999999999776221 122222111111 11 123488999999643221 12234678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+... .+..+..+...+.... .+ |+||+|+.+...... .....+.... ..
T Consensus 75 ~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~ 140 (167)
T 1kao_A 75 GQGFILVYSLVNQQ----------SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSS---SEGRALAEEW-GC 140 (167)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCH---HHHHHHHHHH-TS
T ss_pred CCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCH---HHHHHHHHHh-CC
Confidence 89999999876321 1222332333333322 12 899999975443322 2222222222 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+.+.+|+++|.|+..+++++.+.
T Consensus 141 ~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 141 PFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCcCHHHHHHHHHHH
Confidence 68999999999999999999875
No 93
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.43 E-value=3.5e-13 Score=123.43 Aligned_cols=151 Identities=20% Similarity=0.157 Sum_probs=86.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.||||||||+|+|++........+..|.+.... . .....+.++||||...... .+.. ..++.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~---~~~~~~ 76 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG---WLQD---HCLQTG 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-----------C---HHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch---hhhh---hhhccC
Confidence 6899999999999999999987653322223333332221 1 1123688999999854321 1111 225678
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+.+...... .....+.... ...
T Consensus 77 d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~ 142 (169)
T 3q85_A 77 DAFLIVFSVTDRR----------SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL---EEGRHLAGTL-SCK 142 (169)
T ss_dssp SEEEEEEETTCHH----------HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCH---HHHHHHHHHT-TCE
T ss_pred CEEEEEEECCChH----------HHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCH---HHHHHHHHHc-CCc
Confidence 9999999876322 2333333333333321 12 899999985544322 2223332222 336
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+|+++|.|+..+++++.+.
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 143 HIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp EEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEecCccCCCHHHHHHHHHHH
Confidence 7999999999999999999875
No 94
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.43 E-value=4.4e-13 Score=122.09 Aligned_cols=151 Identities=16% Similarity=0.098 Sum_probs=91.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+++++...... ... ...+.++||||..... ......++.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ 75 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRS 75 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HHHHHHhhc
Confidence 478999999999999999999987632 2223332222111 111 2368999999964322 122334678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .+..+..+...+..... + |+||+|+.+..... ......+.... ..
T Consensus 76 ~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~ 141 (168)
T 1u8z_A 76 GEGFLCVFSITEME----------SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS---VEEAKNRADQW-NV 141 (168)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC---HHHHHHHHHHH-TC
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC---HHHHHHHHHHc-CC
Confidence 99999999876322 12223323233333221 2 99999998654332 22222222222 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 142 NYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998763
No 95
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.43 E-value=7.3e-13 Score=123.83 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=94.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCc---ccccc-----------CCeEEEEeCCCcccCCccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN---ENNKV-----------PAFLNVVDIAGLVKGAAEGQG 160 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~---~~~~~-----------~~~i~l~DtpG~~~~~~~~~~ 160 (561)
..++|+++|.+|||||||+|+|++........|..+.+.. ..... ...+.++||||.....
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR----- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH-----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH-----
Confidence 3579999999999999999999986633222222221111 00001 2369999999974322
Q ss_pred cccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHH
Q psy17315 161 LGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGE 233 (561)
Q Consensus 161 ~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~ 233 (561)
......++.+|++++|+|++... .+..+..+...+.... .+ |+||+|+.+..... ...
T Consensus 85 --~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~ 149 (195)
T 3bc1_A 85 --SLTTAFFRDAMGFLLLFDLTNEQ----------SFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK---EEE 149 (195)
T ss_dssp --HHHHHTTTTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC---HHH
T ss_pred --HHHHHHHcCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC---HHH
Confidence 22345678999999999876321 2222232333333322 12 89999997543332 222
Q ss_pred HHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 234 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 234 l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+..... ...+.+|+++|.|+..++++|.+..
T Consensus 150 ~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 150 ARELAEKYG-IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 333332222 3689999999999999999998763
No 96
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.43 E-value=6.2e-13 Score=123.12 Aligned_cols=149 Identities=13% Similarity=0.179 Sum_probs=93.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCcccccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++... ...+..+.+.. ..... ...+.+|||||... ...++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~ 71 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK--KEMLVDGQTHLVLIREEAGAPD------------AKFSG 71 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEE--EEEEETTEEEEEEEEECSSSCC------------HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEE--EEEEECCEEEEEEEEECCCCch------------hHHHH
Confidence 347999999999999999999998763 22222221111 10111 23588999999643 13457
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc------h---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR------S---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
++|++++|+|.+.++ .+..+..+.+++..... + |+||+|+....... ........+....
T Consensus 72 ~~d~~ilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~-v~~~~~~~~~~~~ 140 (178)
T 2iwr_A 72 WADAVIFVFSLEDEN----------SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV-VGDARARALXADM 140 (178)
T ss_dssp HCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCC-SCHHHHHHHHHHH
T ss_pred hCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCc-CCHHHHHHHHHhh
Confidence 899999999876322 23334443334444322 2 89999995322111 1223333333333
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..+++++.+..
T Consensus 141 ~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 141 KRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp SSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 445789999999999999999998763
No 97
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.42 E-value=8.9e-13 Score=122.63 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=93.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccccC---CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++........|.++.........+ ..+.++||||...... .....++.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 89 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-------MREQYMRT 89 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-------SHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH-------HHHHHHhc
Confidence 4579999999999999999999976532222222221111111112 2467799999643221 12334678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+..+ .++.+..+...+.... .+ |+||+|+.+..... ......+..... .
T Consensus 90 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-~ 155 (183)
T 3kkq_A 90 GDGFLIVYSVTDKA----------SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVT---RDQGKEMATKYN-I 155 (183)
T ss_dssp CSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSC---HHHHHHHHHHHT-C
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcC---HHHHHHHHHHhC-C
Confidence 99999999876322 2233333333332211 11 89999997643332 223333333333 5
Q ss_pred cEEEEEcc-CCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGV-PNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~-~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|++ +|.|++.+++++.+..
T Consensus 156 ~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 156 PYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred eEEEeccCCCCCCHHHHHHHHHHHH
Confidence 68999999 9999999999998753
No 98
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.42 E-value=6.4e-13 Score=126.34 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=94.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.+|||||..... ......++
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~ 100 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR-------TITQSYYR 100 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGH-------HHHHHHHT
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHHh
Confidence 357999999999999999999998763322223222222111 1112 378999999974322 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .+..+..+...+.... .+ |+||+|+....... ......+.......
T Consensus 101 ~~d~iilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~---~~~~~~~~~~~~~~ 167 (201)
T 2hup_A 101 SANGAILAYDITKRS----------SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS---LAEAQSLAEHYDIL 167 (201)
T ss_dssp TCSEEEEEEETTBHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC---HHHHHHHHHHTTCS
T ss_pred hCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC---HHHHHHHHHHcCCC
Confidence 899999999876322 2233333333333322 11 89999998543322 23333443333333
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998864
No 99
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=123.93 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=92.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++... ...+++++.+.... .... ..+.++||||...... + ....+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~ 89 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK----L---RPLCY 89 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS----S---GGGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH----H---hHhhc
Confidence 4568999999999999999999998762 23344444332221 1112 2577999999854332 1 22346
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhc--ch---hhccccccCcCC---------CCCccHHHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLR--RS---VDAKADSKKKMG---------PKKTDEGEK 234 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~--~~---v~NK~D~~~~~~---------~~~~~~~~l 234 (561)
+++|++++|+|++..+ .+..+. .+...+.... .+ |+||+|+..... .........
T Consensus 90 ~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 90 TNTDIFLLCFSVVSPS----------SFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp TTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred CCCcEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 8899999999876322 122221 2222333321 12 899999975310 011122333
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.........+.+|+++|.|+..+++++.+..
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 3444444444789999999999999999998764
No 100
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.42 E-value=6.9e-13 Score=123.02 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=90.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|++++.... ..+++++.+.... . .....+.++||||...... .....++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~ 78 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR-------LRPLSYR 78 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTT-------TGGGGGT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh-------hHHhhcc
Confidence 4579999999999999999999976622 2223333221111 1 1223577999999753321 2234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCC-------CCccHHHHHHH
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGP-------KKTDEGEKKML 237 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~-------~~~~~~~l~~l 237 (561)
.+|++++|+|++..+ .+..+. .+...+... ..+ |+||+|+.+.... ..........+
T Consensus 79 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 148 (182)
T 3bwd_D 79 GADVFILAFSLISKA----------SYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL 148 (182)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred CCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence 899999999876322 122222 223333332 122 8999999754221 00122233333
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.........+.+|+++|.|+..+++++.+..
T Consensus 149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 149 KKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333444679999999999999999998764
No 101
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=2.2e-12 Score=123.00 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=92.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc---CCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
.++|+++|.+|||||||+|+|++........|.++......... ...+.++||||...... .....++.+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 97 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPDT 97 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-------TGGGGCTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhcCCC
Confidence 46899999999999999999998763322222222211111111 23689999999753321 223456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHh--cch---hhccccccCcCCC---------CCccHHHHHHH
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDL--RRS---VDAKADSKKKMGP---------KKTDEGEKKML 237 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~--~~~---v~NK~D~~~~~~~---------~~~~~~~l~~l 237 (561)
|++++|+|.+..+ .+..+ ..+...+... ..+ |+||+|+...... ..........+
T Consensus 98 d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (207)
T 2fv8_A 98 DVILMCFSVDSPD----------SLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM 167 (207)
T ss_dssp CEEEEEEETTCHH----------HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence 9999999875321 22222 2222333332 122 8999999754110 00111122222
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.........+.+|+++|.|+..++++|.+...
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 168 AVRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22333346789999999999999999988753
No 102
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.42 E-value=5.4e-13 Score=126.61 Aligned_cols=153 Identities=17% Similarity=0.115 Sum_probs=94.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++...... ++.++...... ......+.++||||...... .....++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 94 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEG-YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI-------LPYSFII 94 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSC-CCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC-------CCGGGTT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCC-CCCccceEEEEEEEECCEEEEEEEEECCCccchHH-------HHHHHHh
Confidence 458999999999999999999998773322 22222111111 11234689999999653321 2344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .+..+..+...+... ..+ |+||+|+.+....... ....+.... .
T Consensus 95 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~---~~~~~~~~~-~ 160 (201)
T 3oes_A 95 GVHGYVLVYSVTSLH----------SFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV---EGKKLAESW-G 160 (201)
T ss_dssp TCCEEEEEEETTCHH----------HHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHH---HHHHHHHHH-T
T ss_pred cCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHH---HHHHHHHHh-C
Confidence 899999999876321 222333333333222 112 8999999865443322 222222222 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
...+.+|+++|.|+..++++|.+...
T Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 161 ATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999988753
No 103
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.42 E-value=8.4e-13 Score=123.06 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=92.9
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++... ...+++++.+.... ... ...+.++||||...... .....++.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 75 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRT 75 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHHHHhc
Confidence 47899999999999999999997762 23344444332221 111 22477899999653321 12234577
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+.. ..+..+..+...+.... .+ |+||+|+.+... .......+..... .
T Consensus 76 ~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----~~~~~~~~~~~~~-~ 140 (189)
T 4dsu_A 76 GEGFLCVFAINNT----------KSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV----DTKQAQDLARSYG-I 140 (189)
T ss_dssp CSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSS----CHHHHHHHHHHHT-C
T ss_pred CCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccccc----CHHHHHHHHHHcC-C
Confidence 9999999987532 12233333333333322 11 899999974321 2223333333322 4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+.+|.|++.++++|.+..
T Consensus 141 ~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 141 PFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998863
No 104
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.41 E-value=1.1e-12 Score=121.13 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=94.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++... ...+++++...... ... ...+.++||||...... + ....++
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----~---~~~~~~ 79 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----M---REQYMR 79 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----C---HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHh
Confidence 457999999999999999999998752 22334444332211 111 23688999999753321 1 223457
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHH-HHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRI-RDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .+..+..+...+ ..... + |+||+|+.+...... .....+... ..
T Consensus 80 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~~~-~~ 145 (181)
T 2fn4_A 80 AGHGFLLVFAINDRQ----------SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR---SEASAFGAS-HH 145 (181)
T ss_dssp HCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH---HHHHHHHHH-TT
T ss_pred hCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH---HHHHHHHHH-cC
Confidence 889999999876321 122232222222 22211 1 899999986544322 222222222 23
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..++++|.+..
T Consensus 146 ~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 146 VAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998764
No 105
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=2e-13 Score=128.43 Aligned_cols=153 Identities=13% Similarity=0.081 Sum_probs=96.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++.... ..+..+++....... .....+.++||||..... ......++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 94 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR-------TITTAYYR 94 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH-------HHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHHHc
Confidence 4579999999999999999999986622 222333333222211 123469999999954222 22344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|.+.. ..++.+..+...+..... + |+||+|+.+...... .....+.... ..
T Consensus 95 ~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~ 160 (191)
T 3dz8_A 95 GAMGFILMYDITNE----------ESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT---EKGQLLAEQL-GF 160 (191)
T ss_dssp TCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH---HHHHHHHHHH-TC
T ss_pred cCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH---HHHHHHHHHc-CC
Confidence 89999999987632 223344444444444321 1 899999975543322 2222222222 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..+++++.+..
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 161 DFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998764
No 106
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.41 E-value=1.1e-12 Score=119.40 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=90.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccCCE
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDA 174 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~ 174 (561)
++|+++|.+|||||||+|+|++.... ...| |.+.... ......+.++||||..... ......++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 70 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQG 70 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGGGH-------HHHHHHTTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChhhH-------HHHHHHhccCCE
Confidence 47999999999999999999876621 1223 2222111 1234579999999985322 122345689999
Q ss_pred EEEEecccccchhhhccchhhHhhhHHH-HHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhh--c--CC
Q psy17315 175 IFHLCKEKLRNIFFISLNTITIWRNLKL-LETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--V--GT 243 (561)
Q Consensus 175 il~VvD~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~--~~ 243 (561)
+++|+|++..+ .+..+.. +...+... ..+ |+||+|+.+.. ....+...... . ..
T Consensus 71 ~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~ 135 (164)
T 1r8s_A 71 LIFVVDSNDRE----------RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRHRN 135 (164)
T ss_dssp EEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCSSCC
T ss_pred EEEEEECCCHH----------HHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC-----CHHHHHHHhCcccccCcc
Confidence 99999876322 1122221 11111111 111 89999997432 12223222221 1 23
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+.+|+++|.|+..+++++.+..
T Consensus 136 ~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 136 WYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred EEEEEcccCCCcCHHHHHHHHHHHH
Confidence 3578999999999999999998764
No 107
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.41 E-value=2.2e-13 Score=130.79 Aligned_cols=157 Identities=16% Similarity=0.028 Sum_probs=95.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccccccC---CeEEEEeCCCcccCCccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNENNKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSH 168 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~ 168 (561)
...++|+++|.+|||||||+|+|++... ...+..+.+.......... ..+.++||||...... .....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~ 81 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV-------LKDVY 81 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC-------CCHHH
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch-------HHHHH
Confidence 3458999999999999999999997662 2233344333222211111 3589999999753321 12234
Q ss_pred cccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 169 ISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 169 i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
++.+|++++|+|++... .+..+..+...+.... .+ |+||+|+.+..... ......+.. ..
T Consensus 82 ~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~-~~ 147 (218)
T 4djt_A 82 YIGASGAILFFDVTSRI----------TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS---KKLVMEVLK-GK 147 (218)
T ss_dssp HTTCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC---HHHHHHHTT-TC
T ss_pred hhcCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC---HHHHHHHHH-Hc
Confidence 67899999999876322 2223332323333221 12 89999997543322 122222222 23
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
....+.+|+++|.|+..++++|.+.....
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 34689999999999999999999876443
No 108
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.3e-12 Score=126.24 Aligned_cols=154 Identities=13% Similarity=0.113 Sum_probs=93.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ...+ ..+.+|||||..... ......++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 84 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR-------AITSAYYR 84 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT-------CCCGGGTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh-------hhHHHHhc
Confidence 347999999999999999999998774333334333332221 1122 368999999965332 12234568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|.+... .+..+..+...+.... .+ |+||+|+.+..... ......+... ...
T Consensus 85 ~~d~vilV~D~~~~~----------s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~~~~-~~~ 150 (223)
T 3cpj_B 85 GAVGALIVYDISKSS----------SYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP---TEESKTFAQE-NQL 150 (223)
T ss_dssp TCCEEEEEEC-CCHH----------HHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC---HHHHHHHHHH-TTC
T ss_pred cCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC---HHHHHHHHHH-cCC
Confidence 899999999876321 2223333333333321 11 89999998643332 2222233222 234
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.+|+++|.|+..++++|.+...
T Consensus 151 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 151 LFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp EEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999988753
No 109
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.41 E-value=1.7e-12 Score=120.64 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=93.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+..++.+.... . .....+.++||||...... .....++.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 76 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-------LRPLSYPQ 76 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-------TGGGGCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHhccC
Confidence 478999999999999999999976522 1222222221110 1 1123577999999854321 12334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCC---------CCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGP---------KKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~---------~~~~~~~l~~ 236 (561)
+|++++|+|++... .+..+. .+...+... ..+ |+||+|+.+.... ..........
T Consensus 77 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 77 TDVSLICFSLVSPA----------SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred CcEEEEEEECCChh----------hHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 99999999876321 122222 222333332 222 8999999753210 0111222223
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.........+.+|+++|.|+..+++++.+..+
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 333333347899999999999999999998754
No 110
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.41 E-value=5.2e-14 Score=133.44 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=91.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-ccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|++|.+..... ..+ ..+.++||||..... ......++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 104 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYR 104 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC-------CCSCC--C
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHhh
Confidence 3579999999999999999999987654444455554443221 112 368999999964322 22344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc---h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR---S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
.+|++++|+|++..+ .+..+..+...+..... + |+||+|+.+...........+..... .
T Consensus 105 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~----~ 170 (199)
T 3l0i_B 105 GAHGIIVVYDVTDQE----------SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG----I 170 (199)
T ss_dssp CCSEEEECC-CCCSH----------HHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT----C
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC----C
Confidence 899999999876322 22233333333333211 1 89999998665444333333332222 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+|+++|.|+..++++|.+..
T Consensus 171 ~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 171 PFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CBCCCCC---HHHHHHHHHHTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999998764
No 111
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.41 E-value=1.4e-13 Score=145.80 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=100.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc--cCC-eEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK--VPA-FLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~--~~~-~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|+|||||+|+|++.. ..+++.+|+|.++..... .+. .+.+|||||+......+..........++
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 45789999999999999999999988 567889999998765421 222 79999999998654333333334456678
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEE
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKV 247 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i 247 (561)
.+|++++|+|+... .....+..++.+...+ |+||+|+...... .....+.... ....+
T Consensus 113 ~aD~vllVvD~~~~-------------~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-----~~~~~l~~~~-g~~v~ 173 (423)
T 3qq5_A 113 RADCGILVTDSAPT-------------PYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-----ELKGLYESRY-EAKVL 173 (423)
T ss_dssp SCSEEEEECSSSCC-------------HHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-----HHHHHSSCCT-TCCCC
T ss_pred cCCEEEEEEeCCCh-------------HHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-----HHHHHHHHHc-CCCEE
Confidence 99999999986311 1112233344444434 8999999854332 2223332222 34678
Q ss_pred EEEccCCCCHHHHHHHHHhhccCC
Q psy17315 248 GIVGVPNVGKSTFFNVLTKRAFED 271 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~~~~~ 271 (561)
.+|+++|.|+..++++|.+.....
T Consensus 174 ~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 174 LVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEECCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999999987444
No 112
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.41 E-value=5.2e-13 Score=125.21 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=93.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|..+.+.... ... ...+.++||||...... ......++
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~~ 92 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHYYR 92 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHHHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHHhc
Confidence 457999999999999999999998763333333333222111 111 23689999999643210 12233468
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|++... .+..+..+...+.... .+ |+||+|+....... ......+.... .
T Consensus 93 ~~d~iilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~~~~~-~ 158 (189)
T 1z06_A 93 NVHAVVFVYDMTNMA----------SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP---TDLAQKFADTH-S 158 (189)
T ss_dssp TCCEEEEEEETTCHH----------HHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC---HHHHHHHHHHT-T
T ss_pred CCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeC---HHHHHHHHHHc-C
Confidence 899999999876321 2223333333333332 11 89999997554332 22222332222 2
Q ss_pred CcEEEEEccCC---CCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPN---VGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~---~Gks~l~~~l~~~~ 268 (561)
...+.+|+++| .|+..++++|.+..
T Consensus 159 ~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 159 MPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 46899999999 99999999998763
No 113
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=3.8e-12 Score=119.71 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=95.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..++.++.+.... ... ...+.+|||||...... .....++.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~ 89 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-------LRPLSYPM 89 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-------TGGGGCTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-------HHHHhcCC
Confidence 479999999999999999999987522 2333333222211 111 13688999999754331 12344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCC---------CCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGP---------KKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~---------~~~~~~~l~~ 236 (561)
+|++++|+|.+..+ .+..+. .+...+... ..+ |+||+|+...... ..........
T Consensus 90 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 90 TDVFLICFSVVNPA----------SFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence 99999999876322 122222 222333332 122 8999999753200 0112233333
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.........+.+|+++|.|+..+++++.+..
T Consensus 160 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 160 LAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33333444789999999999999999998764
No 114
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.40 E-value=1.6e-12 Score=123.89 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=94.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--ccc--CCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKV--PAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++.... ..+++++.+.... ... ...+.++||||..... ......+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~ 99 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSY 99 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-------TTGGGGC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHh
Confidence 45689999999999999999999976522 2233333322211 111 2246699999984322 1233457
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCC---------CCCccHHHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMG---------PKKTDEGEK 234 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~---------~~~~~~~~l 234 (561)
+.+|++++|+|++... .+..+. .+...+... ..+ |+||+|+..... .........
T Consensus 100 ~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 4gzl_A 100 PQTDVFLICFSLVSPA----------SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
T ss_dssp TTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred ccCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHH
Confidence 8999999999876322 222222 233333333 122 899999975421 001112223
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.......+.+.+|+++|.|+..+++++.+.
T Consensus 170 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 170 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 333334444568999999999999999999875
No 115
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.40 E-value=6.3e-13 Score=125.91 Aligned_cols=156 Identities=18% Similarity=0.097 Sum_probs=91.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCccccc--cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++... ...+.+|++........ ....+.++||||..... ......++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~ 99 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR-------SIAKSYFR 99 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCH-------HHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh-------hhHHHHHh
Confidence 458999999999999999999998762 33344444433222111 12358999999964322 22344568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcC---CCCCccHHHHHHHhhhc
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKM---GPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~---~~~~~~~~~l~~l~~~~ 241 (561)
.+|++++|+|++... .+..+..+.+.+.... .+ |+||+|+.... ............+....
T Consensus 100 ~~d~iilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~ 169 (199)
T 2p5s_A 100 KADGVLLLYDVTCEK----------SFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY 169 (199)
T ss_dssp HCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred hCCEEEEEEECCChH----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc
Confidence 899999999876322 1222332223333321 12 89999997321 11111122222222222
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..++++|.+..
T Consensus 170 -~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 170 -GALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 23678999999999999999998864
No 116
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.40 E-value=1.4e-12 Score=122.17 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=93.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcc-ccc---cCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-NNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~-~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|++++........| |..... ... ....+.+|||||..... .+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------------~~ 83 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ------------FA 83 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEEEEEEEEECSSSCCHH------------HH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEEEEEEEEECCCChhhh------------ee
Confidence 3458999999999999999999998763221112 111100 011 12357889999974211 45
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+.+|++++|+|.+.. ..+..+..+...+..... + |+||+|+....... ........+.....
T Consensus 84 ~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-v~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDE----------ISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRV-IDDSRARKLSTDLK 152 (184)
T ss_dssp HHCSEEEEEEETTCH----------HHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCC-SCHHHHHHHHHHTT
T ss_pred cCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccc-cCHHHHHHHHHHcC
Confidence 789999999987632 123333333333433321 1 89999996322221 12333444444444
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..+++++.+..
T Consensus 153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 153 RCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp TCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 45779999999999999999998763
No 117
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.3e-12 Score=123.28 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=94.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
...++|+++|.+|||||||+|+|++........|..+........ ....+.++||||... . ......++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~-------~~~~~~~~ 97 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-T-------IQREGHMR 97 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-C-------HHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-c-------cchhhhhc
Confidence 345899999999999999999999876322111111111111011 124589999999864 1 12234467
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|++..+ .++.+..+...+.... .+ |+||+|+.+..... ......+.... .
T Consensus 98 ~~d~iilv~D~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~---~~~~~~~~~~~-~ 163 (196)
T 2atv_A 98 WGEGFVLVYDITDRG----------SFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVS---TEEGEKLATEL-A 163 (196)
T ss_dssp HCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSC---HHHHHHHHHHH-T
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccC---HHHHHHHHHHh-C
Confidence 899999999876322 2233333333333321 11 89999998653332 22222222222 3
Q ss_pred CcEEEEEccCCC-CHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNV-GKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~-Gks~l~~~l~~~~ 268 (561)
...+.+|+++|. |+..++++|.+..
T Consensus 164 ~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 164 CAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp SEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 467899999999 9999999998764
No 118
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.39 E-value=1.1e-12 Score=121.99 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=94.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++... ...+++++...... .... ..+.++||||..... ......++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 88 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFR 88 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHHHHHhc
Confidence 347999999999999999999998762 22333333322211 1112 368999999964322 12234467
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .+..+..+...+..... + |+||+|+.+..... ......+.... .
T Consensus 89 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~ 154 (187)
T 2a9k_A 89 SGEGFLCVFSITEME----------SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS---VEEAKNRAEQW-N 154 (187)
T ss_dssp HCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC---HHHHHHHHHHT-T
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC---HHHHHHHHHHc-C
Confidence 899999999876322 12222222233333221 2 89999997643322 22333333222 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..++++|.+..
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 155 VNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999998763
No 119
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.6e-12 Score=122.54 Aligned_cols=153 Identities=17% Similarity=0.128 Sum_probs=92.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCC--ccc-ccCccccccCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFP--FCT-IDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~--~~T-~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
...++|+++|.+|||||||+|+|++........| +.+ ............+.++||||..... ......++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 78 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQRLSIS 78 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHHHhhc
Confidence 3458999999999999999999998663211111 111 1111101122368999999965322 11223457
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
.+|++++|+|.+..+ .+..+..+.+.+.... .+ |+||+|+.++.. .......+....
T Consensus 79 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~- 143 (199)
T 2gf0_A 79 KGHAFILVFSVTSKQ----------SLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREV----DTREAQAVAQEW- 143 (199)
T ss_dssp HCSEEEEEEETTCHH----------HHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSS----CHHHHHHHHHHH-
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcccc----CHHHHHHHHHHh-
Confidence 889999999876321 2233333333333322 12 899999975221 122222222222
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..++++|.+..
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 144 KCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 23678999999999999999999874
No 120
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.38 E-value=3.9e-12 Score=119.11 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=90.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+++++...... ... ...+.+|||||...... .....++.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 92 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRT 92 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTT
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHhhCc
Confidence 479999999999999999999977622 2233333222111 111 23488999999753221 12344688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|.+... .+..+..+...+..... + |+||+|+..+. ........+..... .
T Consensus 93 ~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~~~~~~~~~~~-~ 157 (190)
T 3con_A 93 GEGFLCVFAINNSK----------SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT----VDTKQAHELAKSYG-I 157 (190)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC----SCHHHHHHHHHHHT-C
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc----CCHHHHHHHHHHcC-C
Confidence 99999999875321 22333333333433321 2 89999997521 12233333333322 3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+|+++|.|+..++++|.+..
T Consensus 158 ~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 158 PFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998763
No 121
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.38 E-value=9.5e-13 Score=124.66 Aligned_cols=154 Identities=20% Similarity=0.174 Sum_probs=96.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-cc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-KV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++........|++|.+..... .. ...+.+|||||...... .+.. ..++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---~~~~---~~~~ 95 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG---WLRD---HCLQ 95 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH---HHHH---HHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh---hhHH---Hhhc
Confidence 4579999999999999999999876543344555555433221 11 23578899999853211 1111 2357
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .+..+..+...+.... .+ |+||+|+.+..... ......+.... .
T Consensus 96 ~~d~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~a~~~-~ 161 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRR----------SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS---LEEGRHLAGTL-S 161 (195)
T ss_dssp HCSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC---HHHHHHHHHHT-T
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC---HHHHHHHHHHh-C
Confidence 899999999876322 2233333333333321 12 89999997543332 22222222222 2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..+++++.+..
T Consensus 162 ~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 162 CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999998874
No 122
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.38 E-value=3.6e-12 Score=115.54 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=91.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++|+++|.+|||||||+|+|.+..... .++.++...... .. ....+.++||||...... .....++.+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~ 75 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH-------HHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH-------HHHHhhccC
Confidence 689999999999999999999776221 222222211111 11 123578999999653221 122345789
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
|++++|+|.+.. ..+..+..+...+.... .+ ++||+|+.++. ........+..... .+
T Consensus 76 ~~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~-~~ 140 (166)
T 2ce2_X 76 EGFLCVFAINNT----------KSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART----VESRQAQDLARSYG-IP 140 (166)
T ss_dssp SEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC----SCHHHHHHHHHHHT-CC
T ss_pred CEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc----cCHHHHHHHHHHcC-Ce
Confidence 999999987531 12223333333333332 22 89999998632 12233333333322 36
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+|+.+|.|+..+++++.+..
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 141 YIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998763
No 123
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.38 E-value=1.8e-12 Score=140.71 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=95.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccccccccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACD 173 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D 173 (561)
..++|+++|.||||||||+|+|++.. ....+..+.+.... ...+..+.++||||..... ..+...++++|
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~--~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ad 391 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV--TYKNVKFNVWDVGGQDKIR-------PLWRHYYTGTQ 391 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEE--ESSSCEEEEEEECCCGGGS-------GGGGGGGTTCC
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEE--EeCCEEEEEEECCCcHHHH-------HHHHHHhccCC
Confidence 45899999999999999999999877 33233333322211 1234579999999964332 22455678999
Q ss_pred EEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-h---cch---hhccccccCcCCCCCccHHHHHHHhhh----cC
Q psy17315 174 AIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-L---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----VG 242 (561)
Q Consensus 174 ~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~~ 242 (561)
++++|+|++..+ .+..+......+.. . ..+ |+||+|+.+.. ....+...... ..
T Consensus 392 ~~i~V~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~ 456 (497)
T 3lvq_E 392 GLIFVVDCADRD----------RIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-----KPHEIQEKLGLTRIRDR 456 (497)
T ss_dssp EEEEEEETTCGG----------GHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC-----CHHHHHHHTTCTTCCSS
T ss_pred EEEEEEECcchh----------HHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC-----CHHHHHHHhchhhhhcC
Confidence 999999986322 12222211112211 1 111 89999997432 22233332221 12
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+|+++|.|+..++++|.+..
T Consensus 457 ~~~~~~~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 457 NWYVQPSCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 33579999999999999999999874
No 124
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.38 E-value=2.2e-12 Score=121.69 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=88.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
...++|+++|.+|||||||+|+|++.... ...| |.+.... ......+.++||||...... .....++.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 96 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNICFTVWDVGGQDKIRP-------LWRHYFQN 96 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEE--ETTEEEEEEEETTEEEEEEECC-----CT-------THHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCC--cCceeEEEEEECCEEEEEEECCCCHhHHH-------HHHHHhcc
Confidence 45689999999999999999999876622 1122 2221111 12345799999999853221 22334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-h---cch---hhccccccCcCCCCCccHHHHHHHhhhc---
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-L---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV--- 241 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~--- 241 (561)
+|++++|+|++..+ .+..+......+.. . ..+ |+||+|+.+.. ....+.......
T Consensus 97 ~d~iilv~D~~~~~----------s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-----~~~~i~~~~~~~~~~ 161 (192)
T 2b6h_A 97 TQGLIFVVDSNDRE----------RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM-----PVSELTDKLGLQHLR 161 (192)
T ss_dssp CCEEEEEEETTCGG----------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHTTGGGCS
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC-----CHHHHHHHhCccccc
Confidence 99999999876322 11222111111111 1 111 89999997431 122333322211
Q ss_pred -CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 -GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 -~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..++++|.+..
T Consensus 162 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 162 SRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp SCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 223578999999999999999998764
No 125
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.38 E-value=1.9e-12 Score=122.69 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=95.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++... ...+++++...... ...+ ..+.+|||||..... ......++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 84 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFR 84 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HHHHHHHh
Confidence 457999999999999999999998762 22333333332211 1112 268999999964322 12233457
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc----h---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR----S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .+..+..+...+..... + |+||+|+....... ......+.....
T Consensus 85 ~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 150 (206)
T 2bov_A 85 SGEGFLCVFSITEME----------SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS---VEEAKNRAEQWN- 150 (206)
T ss_dssp HCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC---HHHHHHHHHHHT-
T ss_pred hCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc---HHHHHHHHHHhC-
Confidence 899999999876321 22233333333333221 2 89999997654332 222333322222
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...+.+|+++|.|+..++++|.+..
T Consensus 151 ~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 151 VNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998864
No 126
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=2.1e-12 Score=121.17 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=94.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc--ccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA--AENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~--~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++.... ..+..+++....... .....+.++||||..... ......++.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 87 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR-------TLTPSYYRG 87 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC-------CSHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHHHhcc
Confidence 478999999999999999999987633 233333333221111 122468999999964322 123345688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+|++++|+|++... .+..+..+...+.... .+ |+||+|+.++. . .......+... ...
T Consensus 88 ~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~---~~~~~~~~~~~-~~~ 152 (195)
T 1x3s_A 88 AQGVILVYDVTRRD----------TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-V---DRNEGLKFARK-HSM 152 (195)
T ss_dssp CCEEEEEEETTCHH----------HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-S---CHHHHHHHHHH-TTC
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-c---CHHHHHHHHHH-cCC
Confidence 99999999876321 2223332323333321 11 89999995321 1 12222222222 234
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.+|+++|.|+..++++|.+....
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 153 LFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999987543
No 127
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.37 E-value=3.5e-12 Score=122.56 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=96.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCccc-cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++..... .+..+.+...... ......+.+|||||...... .....++.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 98 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-------VRPLCYSD 98 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-------TGGGGCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHHcCC
Confidence 45899999999999999999999876322 2222222111000 11123688999999753321 12334688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhh-HHHHHHHHHHhcch-----hhccccccCcC---------CCCCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRN-LKLLETRIRDLRRS-----VDAKADSKKKM---------GPKKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~-----v~NK~D~~~~~---------~~~~~~~~~l~~ 236 (561)
+|++++|+|.+..+ .+.. +..+...+...... |+||+|+.+.. ............
T Consensus 99 ~d~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 99 SDAVLLCFDISRPE----------TVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp CSEEEEEEETTCTH----------HHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred CeEEEEEEECcCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 99999999876322 2222 33344444443222 89999997531 001112233333
Q ss_pred HhhhcCCCcEEEEEccCCCC-HHHHHHHHHhhcc
Q psy17315 237 LLGRVGTNLKVGIVGVPNVG-KSTFFNVLTKRAF 269 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~G-ks~l~~~l~~~~~ 269 (561)
+.........+.+|+++|.| +..+++++.+...
T Consensus 169 ~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 33343444679999999998 9999999988753
No 128
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.37 E-value=4.9e-13 Score=128.28 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=94.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--ccc------------CCeEEEEeCCCcccCCcccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKV------------PAFLNVVDIAGLVKGAAEGQ 159 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~------------~~~i~l~DtpG~~~~~~~~~ 159 (561)
...++|+++|.+|||||||+|+|++........|..+.+.... ... ...+.+|||||.....
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---- 98 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR---- 98 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH----
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH----
Confidence 3457999999999999999999998764322223222221111 011 3469999999964221
Q ss_pred ccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-------h---hhccccccCcCCCCCc
Q psy17315 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-------S---VDAKADSKKKMGPKKT 229 (561)
Q Consensus 160 ~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~---v~NK~D~~~~~~~~~~ 229 (561)
......++.+|++++|+|++... .++.+..++..+.. + |+||+|+.......
T Consensus 99 ---~~~~~~~~~~d~iilV~D~~~~~-------------s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~-- 160 (217)
T 2f7s_A 99 ---SLTTAFFRDAMGFLLMFDLTSQQ-------------SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN-- 160 (217)
T ss_dssp ---HHHHHHHTTCCEEEEEEETTCHH-------------HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC--
T ss_pred ---hHHHHHhcCCCEEEEEEECcCHH-------------HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC--
Confidence 22344568899999999876321 12222333333321 1 89999997543332
Q ss_pred cHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 230 DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 230 ~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
......+.... ....+.+|+++|.|+..++++|.+..
T Consensus 161 -~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 161 -ERQARELADKY-GIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp -HHHHHHHHHHT-TCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHC-CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 22233333222 24689999999999999999998764
No 129
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.36 E-value=3.5e-12 Score=122.46 Aligned_cols=156 Identities=14% Similarity=0.131 Sum_probs=84.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-cc---cCCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++..... .+..++...... .. ....+.+|||||...... .....++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~ 104 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE-SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR-------LRPLFYP 104 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH-------HHHHHhc
Confidence 45799999999999999999999766321 222222211111 11 123689999999753321 1123467
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHhcc--h---hhccccccCcCCC---------CCccHHHHH
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDLRR--S---VDAKADSKKKMGP---------KKTDEGEKK 235 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~--~---v~NK~D~~~~~~~---------~~~~~~~l~ 235 (561)
.+|++++|+|.+..+ .+..+. .+...+..... + |+||+|+...... .........
T Consensus 105 ~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 174 (214)
T 2j1l_A 105 DASVLLLCFDVTSPN----------SFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQ 174 (214)
T ss_dssp CEEEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHH
T ss_pred cCCEEEEEEECcCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHH
Confidence 899999999876322 122221 22223333211 2 8999999854210 011122233
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.........+.+|+++|.|+..+++++.+..
T Consensus 175 ~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 175 EMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 333333444789999999999999999998864
No 130
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.36 E-value=9.3e-13 Score=126.89 Aligned_cols=157 Identities=16% Similarity=0.063 Sum_probs=101.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh-cCC-CcccCCCcccccCccccc--cCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT-KSS-AAAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~-~~~-~~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|++. +.. ....+.+|+|........ ....+.++||||...... .....+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~ 85 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG-------LRDGYY 85 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC-------CCHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH-------HHHHHH
Confidence 345899999999999999999954 433 455677787776544321 234689999999643221 223346
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc--h---hhccccccCcCCCCCccHHHHHHHhhhcCCC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR--S---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTN 244 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~ 244 (561)
+.+|++++|+|++.. ..+..+..+...+..... + |+||+|+.+..... ....+.... ..
T Consensus 86 ~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~----~~ 149 (221)
T 3gj0_A 86 IQAQCAIIMFDVTSR----------VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKK----NL 149 (221)
T ss_dssp TTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG--GGCCHHHHH----TC
T ss_pred hcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH--HHHHHHHHc----CC
Confidence 789999999987632 123333333333333221 2 89999997544321 111111111 23
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDD 273 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~ 273 (561)
..+.+|+++|.|+..++++|.+.......
T Consensus 150 ~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 150 QYYDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp EEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 67899999999999999999988655443
No 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.36 E-value=2.7e-12 Score=122.59 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=96.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
..++|+++|.+|||||||+|+|++.... ..++.++.+.... ... ...+.+|||||...... .....++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~ 79 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-------LRPLSYR 79 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhcc
Confidence 4479999999999999999999976632 2233333222211 111 23689999999854332 1223568
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCC-----CCccHHHHHHHhh
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGP-----KKTDEGEKKMLLG 239 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~-----~~~~~~~l~~l~~ 239 (561)
.+|++++|+|.+..+ .+..+. .+...+... ..+ |+||+|+.+.... ..........+..
T Consensus 80 ~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 80 GADIFVLAFSLISKA----------SYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp TCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred CCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 899999999876322 122221 222333332 122 8999999753211 0012233334434
Q ss_pred hcCCCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 240 RVGTNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 240 ~~~~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.......+.+|+++|.|+..+++++.+...
T Consensus 150 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 150 QIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 444457899999999999999999998754
No 132
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.36 E-value=5.1e-12 Score=117.93 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=93.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcc--cCCCcccccCccc-cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAA--ENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~--~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++..... .+..+.+...... ......+.+|||||...... + ....++.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~ 78 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----V---RPLSYPD 78 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT----T---GGGGCTT
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh----h---HHhhcCC
Confidence 45789999999999999999999876321 2222211110000 11123689999999753321 1 2234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcc--h---hhccccccCcCC---------CCCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRR--S---VDAKADSKKKMG---------PKKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~--~---v~NK~D~~~~~~---------~~~~~~~~l~~ 236 (561)
+|++++|+|.+..+ .+..+ ..+...+..... + |+||+|+.+... ...........
T Consensus 79 ~~~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 79 SDAVLICFDISRPE----------TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred CcEEEEEEECCCHH----------HHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 99999999876322 12222 222233333221 2 899999974210 01112223333
Q ss_pred HhhhcCCCcEEEEEcc-CCCCHHHHHHHHHhhc
Q psy17315 237 LLGRVGTNLKVGIVGV-PNVGKSTFFNVLTKRA 268 (561)
Q Consensus 237 l~~~~~~~~~i~isg~-~~~Gks~l~~~l~~~~ 268 (561)
+.........+.+|++ +|.|+..+++.+.+..
T Consensus 149 ~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 149 MAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 3333344578999999 6899999999998763
No 133
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.35 E-value=9.8e-13 Score=130.30 Aligned_cols=161 Identities=11% Similarity=0.068 Sum_probs=97.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc-ccccCccc--cccCCeEEEEeCCCcccCCcccccc----ccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF-CTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGL----GNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~-~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~----~~~~l 166 (561)
..++|+++|.||||||||+|+|++.. ..++..|+ +|+..... ...+..+.+|||||+.........+ ...+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999887 44444555 67665433 2335679999999998654321111 22223
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-----cch---hhc-cccccCcCCCCC----ccHHH
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-----RRS---VDA-KADSKKKMGPKK----TDEGE 233 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~---v~N-K~D~~~~~~~~~----~~~~~ 233 (561)
..++.+|++++|+|++. +......+...+... ..+ +.| |+|+.+. .... .....
T Consensus 101 ~~~~~~d~il~V~d~~~------------~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~ 167 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGR------------YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKA 167 (260)
T ss_dssp HHTTCCSEEEEEEETTC------------CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHH
T ss_pred hcCCCCcEEEEEEeCCC------------CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHH
Confidence 46788999999998752 000111122223332 222 555 9999732 1100 00011
Q ss_pred HHHHhhhcCC----CcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 234 KKMLLGRVGT----NLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 234 l~~l~~~~~~----~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+..+...... ...+.+|+.+|.|+..+++.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 168 LSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp HHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 2223322221 1117889999999999999998764
No 134
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.34 E-value=4e-12 Score=122.72 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=93.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|-+|||||||+++++.........|....+.... ......+.+|||+|...... + ....++.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~----l---~~~~~~~ 85 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS----L---IPSYIRD 85 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG----G---HHHHHTT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh----H---HHHHhcc
Confidence 47999999999999999999987653222222222221111 11123688999999754332 1 2234689
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch------hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS------VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+.+ ..++.+..+...+...... |+||+|+.+...........+..-.+ ..
T Consensus 86 a~~~ilv~di~~~----------~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~----~~ 151 (216)
T 4dkx_A 86 SAAAVVVYDITNV----------NSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN----VM 151 (216)
T ss_dssp CSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----CE
T ss_pred ccEEEEEeecchh----------HHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC----Ce
Confidence 9999999987532 2344444443334332221 89999998655443322222322222 24
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
.+.+||++|.|+..+|..|++...
T Consensus 152 ~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 152 FIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHH
Confidence 688999999999999999998753
No 135
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.34 E-value=3e-12 Score=120.18 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=91.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-c---ccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-N---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++.... ..++.++...... . .....+.+|||||...... + ...+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~----~~~~ 89 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----C----ERYL 89 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----T----HHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----H----HHHH
Confidence 34589999999999999999999987622 2222232221111 1 1223688999999754331 1 2356
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh------cch---hhccccccCcCCCCCccHHHHHHHhhh
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL------RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR 240 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~ 240 (561)
+.+|++++|+|.+..+ .++.+..+...+... ..+ |+||+|+........ .....+...
T Consensus 90 ~~~~~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~~~ 156 (187)
T 3c5c_A 90 NWAHAFLVVYSVDSRQ----------SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK---AEGVALAGR 156 (187)
T ss_dssp TTCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCH---HHHHHHHHH
T ss_pred hhCCEEEEEEECCCHH----------HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCH---HHHHHHHHH
Confidence 8899999999876321 223333333333322 112 899999975443322 222222222
Q ss_pred cCCCcEEEEEc-cCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVG-VPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg-~~~~Gks~l~~~l~~~~ 268 (561)
.. ...+.+|+ ++|.|+..+++.+.+..
T Consensus 157 ~~-~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 157 FG-CLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HT-CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred cC-CcEEEEeecCccccHHHHHHHHHHHH
Confidence 22 36789999 89999999999998763
No 136
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.33 E-value=2.2e-12 Score=126.21 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=87.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCC--cccccCcccc--ccCCeEEEEeCCCcccCCccccc----cccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFP--FCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQG----LGNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~--~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~----~~~~~l 166 (561)
..++|+++|.+|||||||+|+|++.....+..| ++|.+..... ..+..+.+|||||+......... +...+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999999886556666 6777665432 23457999999999865432222 223334
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-hcch---hhccccccCcCCCCCcc---HHHHHHHhh
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-LRRS---VDAKADSKKKMGPKKTD---EGEKKMLLG 239 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~---v~NK~D~~~~~~~~~~~---~~~l~~l~~ 239 (561)
...+.+|++++|+|++... ......+..+.+.+.. ...+ |+||+|+.......... ...+..+..
T Consensus 108 ~~~~~~~~~l~v~d~~~~~--------~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYT--------EEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HTTTCCSEEEEEEETTCCS--------SHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred hcCCCCcEEEEEeeCCCCC--------HHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 4457789999999864211 0111222222222211 1122 89999998654333111 123444444
Q ss_pred hcCCCcEEEEEccCC-----CCHHHHHHHHHhh
Q psy17315 240 RVGTNLKVGIVGVPN-----VGKSTFFNVLTKR 267 (561)
Q Consensus 240 ~~~~~~~i~isg~~~-----~Gks~l~~~l~~~ 267 (561)
.... ..+.++...+ .|+..|+..+...
T Consensus 180 ~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~ 211 (239)
T 3lxx_A 180 IFGD-RYCALNNKATGAEQEAQRAQLLGLIQRV 211 (239)
T ss_dssp HHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-EEEEEECCCCccccHHHHHHHHHHHHHH
Confidence 4332 2344444332 4666777666554
No 137
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.33 E-value=7.7e-12 Score=119.46 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=92.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc---ccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++........|.......... .....+.+|||||...... + ....++.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~ 99 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----V---RPLSYPD 99 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT----T---GGGGCTT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH----H---HHhhccC
Confidence 4579999999999999999999987632211121111111001 1123689999999753321 1 1234688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhH-HHHHHHHHHhcch-----hhccccccCcC---------CCCCccHHHHHH
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNL-KLLETRIRDLRRS-----VDAKADSKKKM---------GPKKTDEGEKKM 236 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~-----v~NK~D~~~~~---------~~~~~~~~~l~~ 236 (561)
+|++++|+|.+..+ .+..+ ..+...+...... |+||+|+.+.. ............
T Consensus 100 ~d~~ilv~D~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 100 SDAVLICFDISRPE----------TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp CSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred CCEEEEEEECCCHH----------HHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 99999999876322 12222 2222333332211 89999997421 001112223333
Q ss_pred HhhhcCCCcEEEEEcc-CCCCHHHHHHHHHhh
Q psy17315 237 LLGRVGTNLKVGIVGV-PNVGKSTFFNVLTKR 267 (561)
Q Consensus 237 l~~~~~~~~~i~isg~-~~~Gks~l~~~l~~~ 267 (561)
+.........+.+|++ +|.|+..+++.+.+.
T Consensus 170 ~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 170 MAKQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 3333334567899999 689999999999875
No 138
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=4.2e-12 Score=122.14 Aligned_cols=154 Identities=17% Similarity=0.134 Sum_probs=91.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
..++|+++|.||||||||+|++++.. ..+..++.++.+.... ... ...+.++||+|..... ..+. ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~---~~l~---~~~~ 109 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGEN---EWLH---DHCM 109 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHH---HHHH---HCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchh---hhHH---HHHH
Confidence 34799999999999999999999755 2334444443332111 111 2246789999864210 1111 1235
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
+.+|++++|+|.+.. ..++.+..+...+.... .+ |+||+|+.+....... ....+....
T Consensus 110 ~~a~~~ilVydvt~~----------~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~---e~~~~a~~~- 175 (211)
T 2g3y_A 110 QVGDAYLIVYSITDR----------ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVS---EGRACAVVF- 175 (211)
T ss_dssp CCCSEEEEEEETTCH----------HHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHH---HHHHHHHHH-
T ss_pred hhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHH---HHHHHHHHc-
Confidence 778999999976532 22333433333443321 12 8999999754333221 111111111
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+||++|.|+..+++++.+..
T Consensus 176 ~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 176 DCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 23578899999999999999998763
No 139
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.32 E-value=1.4e-12 Score=128.54 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=91.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCC--CcccccCcccc--ccCCeEEEEeCCCcccCCccc-ccccccccc-
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENF--PFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEG-QGLGNAFLS- 167 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~--~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~-~~~~~~~l~- 167 (561)
...++|+++|.||||||||+|+|++.....+.. .++|+...... ..+..+.++||||+....... ..+...+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 345899999999999999999999988433332 25777765442 235679999999997544321 223222322
Q ss_pred ---ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH-h-cch---hhccccccCcCCCCC----ccHHHHH
Q psy17315 168 ---HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD-L-RRS---VDAKADSKKKMGPKK----TDEGEKK 235 (561)
Q Consensus 168 ---~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~~---v~NK~D~~~~~~~~~----~~~~~l~ 235 (561)
..+.+|++++|+|++.. ......-++.+.+.+.. . ... +.||+|+.... ... .....+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~~--------~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~ 169 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRF--------TAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALR 169 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBC--------CHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHH
T ss_pred HHhcCCCCCEEEEEEeCCCC--------CHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHH
Confidence 33899999999987510 00011111222211111 0 111 78999996421 000 0012344
Q ss_pred HHhhhcCCCcEEEEEccC-----CCCHHHHHHHHHhhc
Q psy17315 236 MLLGRVGTNLKVGIVGVP-----NVGKSTFFNVLTKRA 268 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~-----~~Gks~l~~~l~~~~ 268 (561)
.+....+. ..+.++... +.|+..|++.+.+..
T Consensus 170 ~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 170 ELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp HHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 44444332 334444443 578888988887764
No 140
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.31 E-value=1.8e-12 Score=131.89 Aligned_cols=160 Identities=12% Similarity=0.056 Sum_probs=101.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccccc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.+||+++|.||||||||+|+|++.. ..+++.+++|.+...+.. ....+.+|||||...... ..........++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME--NYFTKQKDHIFQM 80 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH--HHHTTTHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh--hhhhhHHHHHhcc
Confidence 4789999999999999999998875 566778999988765422 235789999999753310 0001122334578
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc-----ch---hhccccccCcCCCC---CccHHHHHHHhhh
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR-----RS---VDAKADSKKKMGPK---KTDEGEKKMLLGR 240 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~---v~NK~D~~~~~~~~---~~~~~~l~~l~~~ 240 (561)
+|++++|+|++..+ .++.+..+.+.+.++. .+ ++||+|+.+..... .........+...
T Consensus 81 ad~vi~V~D~t~~~----------s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~ 150 (307)
T 3r7w_A 81 VQVLIHVFDVESTE----------VLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE 150 (307)
T ss_dssp CSEEEEEEETTCSC----------HHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCChh----------hHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH
Confidence 99999999986422 2233333333333332 22 89999997411000 0011223333333
Q ss_pred cC--CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VG--TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~--~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+ ..+.+.+|+++ .|...++..+....
T Consensus 151 ~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 151 FGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp TTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 33 35778999999 78888888887763
No 141
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.31 E-value=2.8e-12 Score=122.64 Aligned_cols=157 Identities=15% Similarity=0.053 Sum_probs=89.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++... ...++.++.+....... ...+.+|||||...... .+ ....++.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~---~~~~~~~ 78 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF---QL---LDRFKSS 78 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHH---HH---HHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcceeeEEEEecCCCccEEEEEECCCChhHHH---HH---HHHHHhh
Confidence 457999999999999999999998762 22334333322211111 35699999999853221 01 1223688
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh-----cch---hhccccccCcCCCCCccHHHHHHHhh----
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL-----RRS---VDAKADSKKKMGPKKTDEGEKKMLLG---- 239 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~---- 239 (561)
+|++++|+|++.. .....+..+.+...+... ..+ |+||+|+........ ....+.....
T Consensus 79 ~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~ 149 (214)
T 2fh5_B 79 ARAVVFVVDSAAF--------QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKL-IQQQLEKELNTLRV 149 (214)
T ss_dssp EEEEEEEEETTTH--------HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHH-HHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCc--------CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHH-HHHHHHHHHHHHhc
Confidence 9999999987521 011122223333333321 112 899999985543211 1111221111
Q ss_pred -----------------hcC-------------CCcEEEEEccCC------CCHHHHHHHHHhh
Q psy17315 240 -----------------RVG-------------TNLKVGIVGVPN------VGKSTFFNVLTKR 267 (561)
Q Consensus 240 -----------------~~~-------------~~~~i~isg~~~------~Gks~l~~~l~~~ 267 (561)
... ....+.+|+++| .|++.++++|.+.
T Consensus 150 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 150 TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 234688999999 9999999998764
No 142
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.30 E-value=6.9e-12 Score=125.41 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=26.3
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+|+|+|+||+|...........+.+.+.+... +.+++++||+++.|+.++.+..
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~--~i~v~~~sa~~~~~~~~l~~~l 198 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH--KIKIYEFPETDDEEENKLVKKI 198 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHT--TCCCCCC-----------CHHH
T ss_pred cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHc--CCeEEcCCCCCChhHHHHHHHH
Confidence 689999999995421111122334455555443 6778999999999998886543
No 143
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.30 E-value=6.8e-12 Score=118.43 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=88.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCccc-cccC---CeEEEEeCCCcccCCccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNEN-NKVP---AFLNVVDIAGLVKGAAEGQGLGNAFLSHIS 170 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~-~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~ 170 (561)
.++|+++|.||||||||+|++++.. ..+..++.++.+.... ...+ ..+.++||+|..... ..+.. ...+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~---~~~~~---~~~~ 79 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN---EWLHD---HCMQ 79 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------CTTGG---GHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh---hhHHH---hhcc
Confidence 4789999999999999999999754 3334444444332211 1112 246789999964311 11222 2346
Q ss_pred cCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc----ch---hhccccccCcCCCCCccHHHHHHHhhhcCC
Q psy17315 171 ACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR----RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGT 243 (561)
Q Consensus 171 ~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~ 243 (561)
.+|++++|+|.+..+ .++.+..+...+.... .+ |+||+|+........ .....+... ..
T Consensus 80 ~~~~~i~v~dv~~~~----------s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~---~~~~~~a~~-~~ 145 (192)
T 2cjw_A 80 VGDAYLIVYSITDRA----------SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV---SEGRAXAVV-FD 145 (192)
T ss_dssp HCSEEEEEEETTCHH----------HHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH---HHHHHHHHH-TT
T ss_pred cCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH---HHHHHHHHH-hC
Confidence 789999999875322 2333333333343331 12 899999875333221 111111111 12
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+.+||++|.|+..+++++.+.
T Consensus 146 ~~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 146 XKFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CceEEeccccCCCHHHHHHHHHHH
Confidence 356889999999999999999876
No 144
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.30 E-value=2.3e-12 Score=122.15 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=65.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccc-cCccc-cc-c----CCeEEEEeCCCcccCCccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTI-DPNEN-NK-V----PAFLNVVDIAGLVKGAAEGQGLGNAFL 166 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~-~~~~~-~~-~----~~~i~l~DtpG~~~~~~~~~~~~~~~l 166 (561)
..++|+++|.+|||||||+|+|++.. .....++.++. +.... .. . ...+.++||||..... ....
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~ 91 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK-------EQIS 91 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH-------HHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH-------HHHH
Confidence 34799999999999999999999873 11223333321 22221 11 1 2368999999985322 1234
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc------h---hhccccccC-cCCCCCccHHHHHH
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR------S---VDAKADSKK-KMGPKKTDEGEKKM 236 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~---v~NK~D~~~-~~~~~~~~~~~l~~ 236 (561)
..++.+|++++|+|++... .+..+..+...+..... + |+||+|+.+ ..... ......
T Consensus 92 ~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~---~~~~~~ 158 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSME----------SFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR---LDMAQD 158 (208)
T ss_dssp TTCCCCCEEEEEEETTCHH----------HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC---HHHHHH
T ss_pred HHHhhCcEEEEEEECCCHH----------HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC---HHHHHH
Confidence 5578899999999876321 22333333333433221 2 999999985 33322 223333
Q ss_pred HhhhcCCCcEEEEEccC-CCCHHHHHHHHHhh
Q psy17315 237 LLGRVGTNLKVGIVGVP-NVGKSTFFNVLTKR 267 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~-~~Gks~l~~~l~~~ 267 (561)
+..... ...+.+|+++ |.|+..++++|.+.
T Consensus 159 ~~~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 159 WATTNT-LDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp HHHHTT-CEEEECCC-------CHHHHHHHHH
T ss_pred HHHHcC-CEEEEeccCCCCcCHHHHHHHHHHH
Confidence 333322 4678999999 99999999999876
No 145
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.29 E-value=3.9e-12 Score=130.70 Aligned_cols=149 Identities=16% Similarity=0.148 Sum_probs=89.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--cccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
..++|+++|.+|||||||+|+|++.... ...| |...... ......+.++||||..... ......++.+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~a 233 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNT 233 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE-EEEE--ETTEEEEEEEETTEEEEEEECC-----C-------CSHHHHHTTE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC-Cccc--ccceEEEEEecCcEEEEEEECCCCHhHH-------HHHHHHhccC
Confidence 4579999999999999999999987621 2223 3332221 1234579999999953222 1223446889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhh----c
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGR----V 241 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~----~ 241 (561)
|++++|+|++..+ .+..+. .+...+... ..+ |+||+|+.+.. ....+...... .
T Consensus 234 d~vilV~D~~~~~----------s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-----~~~~i~~~~~~~~~~~ 298 (329)
T 3o47_A 234 QGLIFVVDSNDRE----------RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRH 298 (329)
T ss_dssp EEEEEEEETTCSS----------SHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-----CHHHHHHHHTCTTCCS
T ss_pred CEEEEEEECCchH----------HHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-----CHHHHHHHhchhhhhc
Confidence 9999999876322 111121 111222211 111 89999997432 12223222222 1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+.+|+++|.|+..++++|.+..
T Consensus 299 ~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 299 RNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 234578999999999999999998764
No 146
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.29 E-value=9.9e-13 Score=132.73 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=91.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC------cccCCCc----------------------ccccCcc-----------
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA------AAENFPF----------------------CTIDPNE----------- 135 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~------~~~~~~~----------------------~T~~~~~----------- 135 (561)
..++|+++|.||||||||+|+|++... .++..|+ +|++...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999873 3455665 4443110
Q ss_pred c----c---------c--cCCeEEEEeCCCcccCCcc--cc----ccccccccccccCCEEE-EEecccccchhhhccch
Q psy17315 136 N----N---------K--VPAFLNVVDIAGLVKGAAE--GQ----GLGNAFLSHISACDAIF-HLCKEKLRNIFFISLNT 193 (561)
Q Consensus 136 ~----~---------~--~~~~i~l~DtpG~~~~~~~--~~----~~~~~~l~~i~~~D~il-~VvD~~~~~~~~~~~~~ 193 (561)
+ . . ....+.||||||+...... .. .+......+++.++.++ +|+|++..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------- 175 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--------- 175 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC---------
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc---------
Confidence 0 0 0 0257999999999753210 01 22233345667777655 78887521
Q ss_pred hhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 194 ITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 194 ~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.. ......+...+.....+ |+||+|+.+.... ....+....... +....+.+|+++|.|+.++++++.+.
T Consensus 176 ~~-~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 176 LA-NSDALKIAKEVDPQGQRTIGVITKLDLMDEGTD---ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GG-GCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCC---CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred hh-hhHHHHHHHHhCCCCCeEEEEEEccccCCCCch---HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 00 00110112222222222 8999999854321 111121110011 12256789999999999999998774
No 147
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.27 E-value=7.9e-12 Score=118.09 Aligned_cols=155 Identities=10% Similarity=0.025 Sum_probs=88.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcc--cccCcccc---ccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFC--TIDPNENN---KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~--T~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
..++|+++|.+|||||||+|.+++..... ...+. |....... .....+.+|||||...... +.......+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~~~~~~ 93 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD----PTFDYEMIF 93 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC----TTCCHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHh----hhhhccccc
Confidence 45899999999999999999999864211 11221 11111100 1234799999999754221 110003456
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cc--h---hhccccccCcCCCCCccHHH-----HHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RR--S---VDAKADSKKKMGPKKTDEGE-----KKM 236 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~--~---v~NK~D~~~~~~~~~~~~~~-----l~~ 236 (561)
+.+|++++|+|++.. ..+.++.+...+.+. .. + |+||+|+........ .... ...
T Consensus 94 ~~~~~~i~v~d~~~~-----------~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~v~~~~~~~ 161 (196)
T 3llu_A 94 RGTGALIYVIDAQDD-----------YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIE-TQRDIHQRANDD 161 (196)
T ss_dssp HTCSEEEEEEETTSC-----------CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH-HHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCc-----------hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhH-HHhHHHHHHHHH
Confidence 889999999987631 122333333344333 11 1 899999863210000 0011 111
Q ss_pred Hhhh---cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 237 LLGR---VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 237 l~~~---~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
+... ......+.+|+++ .|+..+++.+.+.
T Consensus 162 ~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 162 LADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred HHHhhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 1111 1233568999999 9999999999875
No 148
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.27 E-value=3.8e-12 Score=143.24 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=100.3
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcc--------------cccCcccc---------------------
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFC--------------TIDPNENN--------------------- 137 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~--------------T~~~~~~~--------------------- 137 (561)
..+++|+++|.||+|||||+|+|+|.. ..++..|++ |+....+.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 456899999999999999999999988 677777777 43210000
Q ss_pred -------------------ccC-----CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccch
Q psy17315 138 -------------------KVP-----AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNT 193 (561)
Q Consensus 138 -------------------~~~-----~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~ 193 (561)
..+ ..+.||||||+..... ........++.||++++|+|++...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~-------- 214 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPC-------- 214 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTT--------
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCcc--------
Confidence 000 3699999999975321 2234456778999999999875211
Q ss_pred hhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHH-------HHH-----HHhhhc-------CCCcEEEEEc
Q psy17315 194 ITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEG-------EKK-----MLLGRV-------GTNLKVGIVG 251 (561)
Q Consensus 194 ~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~-------~l~-----~l~~~~-------~~~~~i~isg 251 (561)
.....+.+.+.+.....+ |+||+|+............ .+. .+.... .....+.+|+
T Consensus 215 --s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSA 292 (695)
T 2j69_A 215 --TLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSS 292 (695)
T ss_dssp --CHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCH
T ss_pred --chhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeC
Confidence 011122222223222222 8999999754322221110 111 111111 1236799999
Q ss_pred c--------------CCCCHHHHHHHHHhhc
Q psy17315 252 V--------------PNVGKSTFFNVLTKRA 268 (561)
Q Consensus 252 ~--------------~~~Gks~l~~~l~~~~ 268 (561)
+ ++.|+..|++.|.+..
T Consensus 293 k~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 293 IQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred hHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 9 9999999999998753
No 149
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.25 E-value=5.9e-12 Score=114.82 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=78.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+|||+|++.+.+..+. ..++++|++ +....+......+.+|||+|.++ ...+...+.+.....+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG-GRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEEETTEEEEEEEEECC----------------CCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHcCcccc--CCCCccccceEEEEEECCEEEEEEEEECCCCcc-chhhhhhhhhhCCEEEEE
Confidence 57999999999999999999876432 333334443 21122222334678999999643 333443333222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ .+.+.+.+..+..++.. +.........|+++|+||+|. .....
T Consensus 80 ~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~ilv~nK~Dl--~~~~~ 123 (166)
T 3q72_A 80 Y----------------SVTDKGSFEKASELRVQ------------------LRRARQTDDVPIILVGNKSDL--VRSRE 123 (166)
T ss_dssp E----------------ETTCHHHHHHHHHHHHH------------------HHHCC---CCCEEEEEECTTC--CSSCC
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEecccc--ccccc
Confidence 1 12223333333333222 111111247899999999954 32223
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
...+...++.... +.+++++||++|.|++++.+...+
T Consensus 124 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 160 (166)
T 3q72_A 124 VSVDEGRACAVVF--DCKFIETSAALHHNVQALFEGVVR 160 (166)
T ss_dssp SCHHHHHHHHHHT--TCEEEECBGGGTBSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHH
Confidence 3344444555444 678999999999999887655444
No 150
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.25 E-value=2.6e-11 Score=123.74 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=96.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc-c---cCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN-K---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~-~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|++++... ...+++++.+..... . ....+.++||||..... ......+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~ 224 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSY 224 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-------TTGGGGC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-------HHHHHhc
Confidence 4568999999999999999999997653 223344443322211 1 12246699999975432 1223456
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCC---------CCCccHHHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMG---------PKKTDEGEK 234 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~---------~~~~~~~~l 234 (561)
+.+|++++|+|++... .+..+. .+...+... ..+ |+||+|+..... .........
T Consensus 225 ~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 225 PQTDVFLICFSLVSPA----------SFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp TTCSEEEEEEETTCHH----------HHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred cCCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 8899999999876322 122221 222333332 222 899999974310 011122223
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.........+.+|+++|.|+..+++.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 3333333334689999999999999999998764
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.24 E-value=6.3e-12 Score=136.52 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=99.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---cCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---VPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
++++|+++|.+|+|||||+|+|++........||+|.+...... .+..+.||||||..... ......++.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-------~~~~~~~~~ 75 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-------AMRARGTQV 75 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-------TSBBSSSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-------HHHHHHHcc
Confidence 45789999999999999999999877555577899988755422 23479999999964332 223345678
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc----CCC
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV----GTN 244 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~----~~~ 244 (561)
+|++++|+|++.... ....+.+ ..+.....+ ++||+|+........ ...+....... ...
T Consensus 76 aD~vILVVDa~dg~~-------~qt~e~l----~~~~~~~vPiIVViNKiDl~~~~~~~v--~~~l~~~~~~~e~~~~~~ 142 (537)
T 3izy_P 76 TDIVILVVAADDGVM-------KQTVESI----QHAKDAHVPIVLAINKCDKAEADPEKV--KKELLAYDVVCEDYGGDV 142 (537)
T ss_dssp BSSCEEECBSSSCCC-------HHHHHHH----HHHHTTTCCEEECCBSGGGTTTSCCSS--SSHHHHTTSCCCCSSSSE
T ss_pred CCEEEEEEECCCCcc-------HHHHHHH----HHHHHcCCcEEEEEecccccccchHHH--HHHHHhhhhhHHhcCCCc
Confidence 999999998863110 1111111 112222223 899999975432211 11222221111 123
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.+||++|.|++.|++++....
T Consensus 143 ~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 143 QAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp EECCCCSSSSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCchhHHHHHHHhh
Confidence 678999999999999999998753
No 152
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.22 E-value=4.4e-12 Score=129.12 Aligned_cols=162 Identities=14% Similarity=0.022 Sum_probs=89.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC-c-----ccCCC---cccccCc--------------------------------
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA-A-----AENFP---FCTIDPN-------------------------------- 134 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~-~-----~~~~~---~~T~~~~-------------------------------- 134 (561)
.++|+++|.||||||||+|+|+|... . ++..| .+|+.+.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 46899999999999999999999863 2 23345 3333210
Q ss_pred ------c----c---------cc--cCCeEEEEeCCCcccCCc------cccccccccccccccCCEEEEEecccccchh
Q psy17315 135 ------E----N---------NK--VPAFLNVVDIAGLVKGAA------EGQGLGNAFLSHISACDAIFHLCKEKLRNIF 187 (561)
Q Consensus 135 ------~----~---------~~--~~~~i~l~DtpG~~~~~~------~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~ 187 (561)
. + .. ...++.++||||+..... ....+......+++.+|++++|+|++.....
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 0 0 01 124699999999975221 1112334446678899999999986321100
Q ss_pred hhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh--cCCCcEEEEEccC---CCCHHH
Q psy17315 188 FISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVP---NVGKST 259 (561)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~---~~Gks~ 259 (561)
. .....+...+.....+ |+||+|+...... ....+...... ....+.+++||.+ +.|+..
T Consensus 184 --------~-~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~ 251 (315)
T 1jwy_B 184 --------N-SDALQLAKEVDPEGKRTIGVITKLDLMDKGTD---AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRE 251 (315)
T ss_dssp --------T-CSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC---CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHH
T ss_pred --------h-hHHHHHHHHhCCCCCcEEEEEcCcccCCcchH---HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHH
Confidence 0 0001122222222223 8999999854321 11112210011 1222345666776 889999
Q ss_pred HHHHHHhhcc
Q psy17315 260 FFNVLTKRAF 269 (561)
Q Consensus 260 l~~~l~~~~~ 269 (561)
+++.+.+...
T Consensus 252 l~~~~~~~~~ 261 (315)
T 1jwy_B 252 SLKSEILYFK 261 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999877643
No 153
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.22 E-value=2.9e-11 Score=113.52 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=94.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+...-+.... ..+......+.+|||||.++ +..+...+.+....++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-YRTITTAYYRGAMGFIL 101 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-CHHHHHHHHTTCCEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-HHHHHHHHHccCCEEEE
Confidence 46899999999999999999999876555444332111111 11122334688999999543 44444444433332222
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +.... ....|+++|+||+|. ....
T Consensus 102 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~piilv~nK~Dl--~~~~ 144 (191)
T 3dz8_A 102 MY----------------DITNEESFNAVQDWATQ------------------IKTYS-WDNAQVILVGNKCDM--EEER 144 (191)
T ss_dssp EE----------------ETTCHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECTTC--GGGC
T ss_pred EE----------------ECcCHHHHHHHHHHHHH------------------HHHhc-CCCCCEEEEEECCCC--cccc
Confidence 11 12222333333222221 22222 147899999999954 3323
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
....+...++.... +.+++++||++|.|+.++.+...+.+.
T Consensus 145 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 145 VVPTEKGQLLAEQL--GFDFFEASAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp CSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33445555555544 678999999999999888665554443
No 154
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.86 E-value=1e-12 Score=124.89 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=89.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc----cccCCeEEEEeCCCcccCCcccccccccccccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i 169 (561)
...++|+++|.+|||||||+|+|++.... ..+..++.+.... ......+.+|||||...... .....+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~ 99 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-------LRPLSY 99 (204)
Confidence 35689999999999999999999876522 2222233222111 11223567999999753321 123346
Q ss_pred ccCCEEEEEecccccchhhhccchhhHhhhHH-HHHHHHHHh--cch---hhccccccCcCCCCC---------ccHHHH
Q psy17315 170 SACDAIFHLCKEKLRNIFFISLNTITIWRNLK-LLETRIRDL--RRS---VDAKADSKKKMGPKK---------TDEGEK 234 (561)
Q Consensus 170 ~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~--~~~---v~NK~D~~~~~~~~~---------~~~~~l 234 (561)
+.+|++++|+|++.... +..+. .+...+... ..+ |+||+|+.+...... ......
T Consensus 100 ~~~d~iilv~D~~~~~s----------~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 3th5_A 100 PQTDVFLICFSLVSPAS----------FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
Confidence 88999999998763221 11111 111122211 112 899999975432110 001111
Q ss_pred HHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 235 ~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.........+.+|+++|.|+..+++++.+.
T Consensus 170 ~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 170 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 111122222356889999999999999998764
No 155
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.22 E-value=1.1e-11 Score=112.64 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=86.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+... +.++.+.. ....+... ...+.+|||||.++ +..+...+.+....++.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVED-YEPTKADS-YRKKVVLDGEEVQIDILDTAGQED-YAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSC-CCTTCCEE-EEEEEEETTEEEEEEEEECCC----CHHHHHHHHHHCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCCC-CCCCcceE-EEEEEEECCEEEEEEEEECCCcch-hHHHHHHHhhcCCEEEE
Confidence 5799999999999999999998764332 22222221 01112222 23688999999643 33444333332222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..++.. +........+|+++|+||+|. ....
T Consensus 82 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~~ 125 (168)
T 1u8z_A 82 VF----------------SITEMESFAATADFREQ------------------ILRVKEDENVPFLLVGNKSDL--EDKR 125 (168)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHHCCTTSCEEEEEECGGG--GGGC
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEECccc--cccC
Confidence 11 11222333323222221 222221237899999999954 3322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+++... +.+++++||++|.|++++.+...
T Consensus 126 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 126 QVSVEEAKNRADQW--NVNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp CSCHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCeEEEeCCCCCCCHHHHHHHHH
Confidence 33345566665554 57899999999999888755443
No 156
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.21 E-value=5.8e-12 Score=130.47 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=82.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC--------------------------------------CcccCCC------ccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS--------------------------------------AAAENFP------FCT 130 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~--------------------------------------~~~~~~~------~~T 130 (561)
....|+++|+||||||||+|+|++.. +.+.+.| |+|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 46789999999999999999998621 0111222 344
Q ss_pred ccCcccc----ccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHH
Q psy17315 131 IDPNENN----KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETR 206 (561)
Q Consensus 131 ~~~~~~~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~ 206 (561)
++..... ..+..+.++||||+..+. ......+|++++|+|++..+. ...+...
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~----------~~l~~~~d~vl~V~d~~~~~~-------------~~~i~~~ 209 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE----------FAVADMVDMFVLLLPPAGGDE-------------LQGIKRG 209 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH----------HHHHTTCSEEEEEECCC------------------------
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh----------hhHHhhCCEEEEEEcCCcchh-------------HHHhHHH
Confidence 4322221 134578999999985322 112467899999998753110 0001111
Q ss_pred HHHh-cchhhccccccCcCCCCCccHHHHHHHhhhc------CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 207 IRDL-RRSVDAKADSKKKMGPKKTDEGEKKMLLGRV------GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 207 l~~~-~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~------~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+. ...+.||+|+.+..... .....+...+... ...+.+.+||++|.|+..|+++|.+..
T Consensus 210 il~~~~ivVlNK~Dl~~~~~~~-~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 210 IIEMADLVAVTKSDGDLIVPAR-RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp -CCSCSEEEECCCSGGGHHHHH-HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhcCCEEEEeeecCCCchhHH-HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 1111 11178999987321100 0011122211111 123568899999999999999998763
No 157
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.21 E-value=1e-11 Score=112.76 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=85.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+..... ++.++.. ...+... ...+.+|||||.++ +..+...+.+....++.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD-PTIEDFY-RKEIEVDSSPSVLEILDTAGTEQ-FASMRDLYIKNGQGFIL 80 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEEE-EEEEEETTEEEEEEEEECCCTTC-CHHHHHHHHHHCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC-CCcceeE-EEEEEECCEEEEEEEEECCCchh-hHHHHHHHhccCCEEEE
Confidence 579999999999999999999876543222 2222211 1112222 23588999999543 33333333322222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..++.. +.........|+++|+||+|. ....
T Consensus 81 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~~ 124 (167)
T 1kao_A 81 VY----------------SLVNQQSFQDIKPMRDQ------------------IIRVKRYEKVPVILVGNKVDL--ESER 124 (167)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHTTTSCCCEEEEEECGGG--GGGC
T ss_pred EE----------------eCCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECCcc--cccc
Confidence 11 11222232222222211 111111247899999999954 3322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+...+++... +.+++++||++|.|++++.+...
T Consensus 125 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 125 EVSSSEGRALAEEW--GCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp CSCHHHHHHHHHHH--TSCEEEECTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--CCCEEEecCCCCcCHHHHHHHHH
Confidence 33344445555444 57899999999999988755543
No 158
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.21 E-value=5.4e-12 Score=121.77 Aligned_cols=159 Identities=11% Similarity=0.096 Sum_probs=97.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc-ccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP-VRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp-~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+||++|+++++...|.....+++...... ...+......+.+|||+|. +++..+...+.+....++..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGq-e~~~~l~~~~~~~a~~~ilv 92 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGL-ERFRSLIPSYIRDSAAAVVV 92 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCT-TTCGGGHHHHHTTCSEEEEE
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCc-hhhhhHHHHHhccccEEEEE
Confidence 479999999999999999999887765444332211100 0111112245789999995 44555666665555444333
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ .+.+.+.+..+..|+.. +..... ...|+++|+||+| +.....
T Consensus 93 ~----------------di~~~~Sf~~i~~~~~~------------------i~~~~~-~~~piilVgNK~D--l~~~r~ 135 (216)
T 4dkx_A 93 Y----------------DITNVNSFQQTTKWIDD------------------VRTERG-SDVIIMLVGNKTD--LADKRQ 135 (216)
T ss_dssp E----------------ETTCHHHHHTHHHHHHH------------------HHHHHT-TSSEEEEEEECTT--CGGGCC
T ss_pred e----------------ecchhHHHHHHHHHHHH------------------HHHhcC-CCCeEEEEeeccc--hHhcCc
Confidence 3 34555666666555443 121221 4689999999995 433334
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
...++..+++... +.+++.+||++|.|++++.+...+.
T Consensus 136 V~~~e~~~~a~~~--~~~~~e~SAktg~nV~e~F~~i~~~ 173 (216)
T 4dkx_A 136 VSIEEGERKAKEL--NVMFIETSAKAGYNVKQLFRRVAAA 173 (216)
T ss_dssp SCHHHHHHHHHHH--TCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ccHHHHhhHHHHh--CCeeEEEeCCCCcCHHHHHHHHHHH
Confidence 4456666666665 6889999999999998886665443
No 159
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.20 E-value=5.1e-11 Score=125.86 Aligned_cols=157 Identities=13% Similarity=0.147 Sum_probs=92.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccc--------------cCccc-------cccCCeEEEEeCCCc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTI--------------DPNEN-------NKVPAFLNVVDIAGL 151 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~--------------~~~~~-------~~~~~~i~l~DtpG~ 151 (561)
...++|+++|.+|+|||||+|+|++.. .....+++.|. +.... ......+.++||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 345899999999999999999999854 22222222221 10000 001146899999995
Q ss_pred ccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhccccccCcCCCC
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAKADSKKKMGPK 227 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK~D~~~~~~~~ 227 (561)
. .+.......++.+|++++|+|++... +.....+.+ ..+..+.. + ++||+|+.......
T Consensus 86 ~-------~~~~~~~~~~~~~D~~ilVvda~~~~------~~~qt~~~~----~~~~~~~~~~iivviNK~Dl~~~~~~~ 148 (403)
T 3sjy_A 86 E-------VLMATMLSGAALMDGAILVVAANEPF------PQPQTREHF----VALGIIGVKNLIIVQNKVDVVSKEEAL 148 (403)
T ss_dssp G-------GGHHHHHHHHTTCSEEEEEEETTSCS------SCHHHHHHH----HHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred H-------HHHHHHHHHHhhCCEEEEEEECCCCC------CcHHHHHHH----HHHHHcCCCCEEEEEECccccchHHHH
Confidence 3 22334456678899999999986321 011111111 12222222 2 89999997432110
Q ss_pred CccHHHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 228 KTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 228 ~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+....... ...+.+.+||++|.|+.+|+++|.+..
T Consensus 149 -~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 149 -SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp -HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 0111122222211 245789999999999999999998864
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.19 E-value=3.1e-11 Score=131.44 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC----------------cc------cCCCcccccCccc--cccCCeEEEEeCCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA----------------AA------ENFPFCTIDPNEN--NKVPAFLNVVDIAGL 151 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~----------------~~------~~~~~~T~~~~~~--~~~~~~i~l~DtpG~ 151 (561)
..+|+++|.+|||||||+|+|+.... .+ ...+|+|...... ...+..+.||||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 35899999999999999999962210 01 1124556554332 123457999999998
Q ss_pred ccCCccccccccccccccccCCEEEEEeccc
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.... ......++.+|++++|+|++
T Consensus 93 ~df~-------~~~~~~l~~aD~allVvDa~ 116 (528)
T 3tr5_A 93 ADFT-------EDTYRTLTAVDSALMVIDAA 116 (528)
T ss_dssp TTCC-------HHHHHGGGGCSEEEEEEETT
T ss_pred hhHH-------HHHHHHHHhCCEEEEEEeCC
Confidence 6433 23456678999999999986
No 161
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.19 E-value=2.4e-11 Score=133.03 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=88.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCccccc----Cccc------cccCCeEEEEeCCCcccCCccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTID----PNEN------NKVPAFLNVVDIAGLVKGAAEGQGLG 162 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~----~~~~------~~~~~~i~l~DtpG~~~~~~~~~~~~ 162 (561)
..++|+++|.||||||||+|+|++... ...+..|.+.. ++.+ ......+.++||||..... .+.
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----~~~ 115 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----ASH 115 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT----TTC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH----HHH
Confidence 457999999999999999999998762 22222222211 1110 1124579999999954322 122
Q ss_pred cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHH
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKML 237 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l 237 (561)
.. .++.+|++++|+|++. .+.+..+..++.... .+ |+||+|+.+..... .......
T Consensus 116 ~~---~l~~~d~ii~V~D~s~-------------~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~---~~~~~~~ 176 (535)
T 3dpu_A 116 QF---FMTRSSVYMLLLDSRT-------------DSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE---QKKINER 176 (535)
T ss_dssp HH---HHHSSEEEEEEECGGG-------------GGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC---HHHHHHH
T ss_pred HH---HccCCcEEEEEEeCCC-------------chhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC---HHHHHHH
Confidence 22 3567999999998752 133344445555544 22 89999998654332 2333333
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
.... ..+.+.+|+++|.|+..|++++.+....
T Consensus 177 ~~~~-~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 177 FPAI-ENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CGGG-TTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHhc-CCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 3222 2358999999999999999999987543
No 162
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.18 E-value=2.2e-11 Score=113.02 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=90.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+||++|++.+.+..+... +.++.+.. -...+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFVED-YEPTKADS-YRKKVVLDGEEVQIDILDTAGQED-YAAIRDNYFRSGEGFL 94 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCTTCCEE-EEEEEEETTEEEEEEEEECCCTTC-CHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCc-CCCccceE-EEEEEEECCEEEEEEEEECCCCcc-cHHHHHHHhccCCEEE
Confidence 36799999999999999999998764332 22222221 011122222 3688999999543 3333333332222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..++.. +.........|+++|+||+|. ...
T Consensus 95 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~ 138 (187)
T 2a9k_A 95 CVF----------------SITEMESFAATADFREQ------------------ILRVKEDENVPFLLVGNKSDL--EDK 138 (187)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHHCCTTCCEEEEEECGGG--GGG
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--ccc
Confidence 111 12222333333232221 222221237899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+++.++++.. +.+++++||+++.|+.++.+...+.+
T Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 139 RQVSVEEAKNRAEQW--NVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHc--CCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 333455666666654 67899999999999988866554443
No 163
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.17 E-value=1.3e-11 Score=115.26 Aligned_cols=156 Identities=17% Similarity=0.101 Sum_probs=83.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC-CcccC-CCcccccCcccc-------ccCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAEN-FPFCTIDPNENN-------KVPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~-~~~~~-~~~~T~~~~~~~-------~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
++|+++|.+|||||||+|+|++.. ...+. .|..+.+..... .....+.++||||...... +. ..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~---~~ 75 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS----TH---PH 75 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT----TS---HH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----hh---HH
Confidence 689999999999999999999853 22222 122222211110 1234689999999753221 11 22
Q ss_pred ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc--ch---hhccccccCcCCCCCccHHHHHHHhhhcC
Q psy17315 168 HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR--RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVG 242 (561)
Q Consensus 168 ~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~ 242 (561)
.++.+|++++|+|.+... ..+..+..+...+.... .+ |+||+|+.+..............+.....
T Consensus 76 ~~~~~~~~i~v~d~~~~~---------~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQ---------AEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRG 146 (184)
T ss_dssp HHHHSEEEEEEEEGGGCH---------HHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTT
T ss_pred HccCCcEEEEEEeCCcch---------hHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcC
Confidence 356789999999865311 11223322222222221 12 78999997321100000011112221122
Q ss_pred CC---cEEEEEccCCC-CHHHHHHHHHhhc
Q psy17315 243 TN---LKVGIVGVPNV-GKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~---~~i~isg~~~~-Gks~l~~~l~~~~ 268 (561)
.. ..+.+|+++|. |...|++.+.+..
T Consensus 147 ~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 147 FPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp SCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred CcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 11 26889999997 9999999998764
No 164
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.17 E-value=1.3e-11 Score=124.98 Aligned_cols=130 Identities=15% Similarity=0.037 Sum_probs=83.6
Q ss_pred CCceEEEeccCCCCCCCCccccCCCcccchhhh-hcCCCCc-----cCCCChHH----HHHHHHHHHhcCCCc--ccccc
Q psy17315 7 KPTLKLIEATVPRDGLSFYESTNPKIPRSNQIL-ISDKPTW-----GDGDGPKA----PKRRKQHLSDKLRPK--ADSKK 74 (561)
Q Consensus 7 ~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~-~~~k~~l-----~DL~~~~~----~~~w~~~l~~~~~~~--~~~~~ 74 (561)
+.+++|+|||.| ..+.| .|+++.... ..++|.+ +||+++.. ++.|.+++++.+..+ +++..
T Consensus 88 D~v~~V~~~~~p------~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~ 160 (307)
T 1t9h_A 88 DQAVLVFSAVQP------SFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD 160 (307)
T ss_dssp CEEEEEEESTTT------TCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred CEEEEEEeCCCC------CCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 567999999999 88888 787722211 1455554 99998754 789999998877766 56666
Q ss_pred ccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCC-------cccccCccccccCCeEEEE
Q psy17315 75 KMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFP-------FCTIDPNENNKVPAFLNVV 146 (561)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~-------~~T~~~~~~~~~~~~i~l~ 146 (561)
+.+....... ..+-.++++|.||||||||+|+|.+.. ..++..+ ++|+.... ...+ ..+++
T Consensus 161 ~~g~~~L~~~---------~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~-~~~~-~g~v~ 229 (307)
T 1t9h_A 161 QDSLADIIPH---------FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL-IHTS-GGLVA 229 (307)
T ss_dssp HTTCTTTGGG---------GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE-EEET-TEEEE
T ss_pred CCCHHHHHhh---------cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH-hhcC-CEEEe
Confidence 6554432111 124579999999999999999999865 4444443 34543221 1222 46899
Q ss_pred eCCCcccC
Q psy17315 147 DIAGLVKG 154 (561)
Q Consensus 147 DtpG~~~~ 154 (561)
||||+...
T Consensus 230 dtpg~~~~ 237 (307)
T 1t9h_A 230 DTPGFSSL 237 (307)
T ss_dssp SSCSCSSC
T ss_pred cCCCcccc
Confidence 99998753
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.17 E-value=9.6e-11 Score=129.80 Aligned_cols=156 Identities=16% Similarity=0.049 Sum_probs=91.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccC-------------------------------CCcccccCcccc--ccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAEN-------------------------------FPFCTIDPNENN--KVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~-------------------------------~~~~T~~~~~~~--~~~ 140 (561)
...++|+++|.||+|||||+|+|++....+.. .+|+|.+..... ...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45689999999999999999999876422111 267787765542 234
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N 216 (561)
..+.||||||... +.......++.+|++++|+|++...... ......+.......+..+... |+|
T Consensus 245 ~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~g~~e~----~~~~~~qt~e~l~~~~~lgi~~iIVVvN 313 (611)
T 3izq_1 245 ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFES----GFDLDGQTKEHMLLASSLGIHNLIIAMN 313 (611)
T ss_dssp CEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSHHHHHT----TCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred ceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCCCcccc----cchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence 5799999999843 2334466778999999999986321000 000000011111112222222 799
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHHHH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKSTF 260 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks~l 260 (561)
|+|+.+..... ......+..+..... ..+.+.+||++|.|+..+
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99997421100 001122223322222 346799999999999754
No 166
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.17 E-value=3.5e-11 Score=110.49 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=81.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHH-HHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKE-INKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~-~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+... ..++|+.-....+...+ ..+.+|||||.... ...+...+.+.....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDL--HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccc--cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 35799999999999999999998754322 22233321111222222 36789999996542 122222222222111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ .+.+.+.+..+..++.. +........+|+++|+||+|. ..
T Consensus 82 i~v~----------------d~~~~~s~~~~~~~~~~------------------l~~~~~~~~~piilv~NK~Dl--~~ 125 (175)
T 2nzj_A 82 VIVY----------------SIADRGSFESASELRIQ------------------LRRTHQADHVPIILVGNKADL--AR 125 (175)
T ss_dssp EEEE----------------ETTCHHHHHHHHHHHHH------------------HHHCC----CCEEEEEECTTC--TT
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhhccCCCCEEEEEEChhh--cc
Confidence 1111 12222333322222211 211111137899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
......++..++.... +.+++++||++|.|++++.+.....+
T Consensus 126 ~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 126 CREVSVEEGRACAVVF--DCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TCCSCHHHHHHHHHHH--TSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 2222334444554443 57899999999999988866554443
No 167
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.16 E-value=1.9e-11 Score=131.88 Aligned_cols=154 Identities=20% Similarity=0.177 Sum_probs=91.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-------CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-------AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFL 166 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-------~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l 166 (561)
.++|+++|.+|+|||||+|+|++.. ......+|+|.+..... ..+..+.++||||... +.....
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-------~~~~~~ 91 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------LIRAVV 91 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------HHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-------HHHHHH
Confidence 4789999999999999999999876 23455678887764432 1234799999999742 223345
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh---
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--- 240 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--- 240 (561)
..++.+|++++|+|++..- .....+.+.. +..+..+ ++||+|+....... ....++..+...
T Consensus 92 ~~~~~aD~~ilVvda~~g~-------~~qt~e~l~~----~~~~~ip~IvviNK~Dl~~~~~~~-~~~~~l~~~l~~~~~ 159 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGP-------KTQTGEHMLI----LDHFNIPIIVVITKSDNAGTEEIK-RTEMIMKSILQSTHN 159 (482)
T ss_dssp HHTTSCCEEEEEEETTTCS-------CHHHHHHHHH----HHHTTCCBCEEEECTTSSCHHHHH-HHHHHHHHHHHHSSS
T ss_pred HHHhhCCEEEEEEecCCCc-------cHHHHHHHHH----HHHcCCCEEEEEECCCcccchhHH-HHHHHHHHHHhhhcc
Confidence 6678899999999886310 1111222221 2222222 89999997321110 011122232222
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+.+||++|.|+..|+++|.+..
T Consensus 160 ~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 160 LKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp GGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 2245789999999999999999998853
No 168
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.15 E-value=3.3e-11 Score=114.00 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=91.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+... +.++.+..- ...+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEFVED-YEPTKADSY-RKKVVLDGEEVQIDILDTAGQED-YAAIRDNYFRSGEGFL 90 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCTTCCEEE-EEEEEETTEEEEEEEEECCCTTC-CHHHHHHHHHHCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCccceEE-EEEEEECCEEEEEEEEcCCChhh-hHHHHHHHHhhCCEEE
Confidence 46899999999999999999998764332 222222211 11122222 3688999999543 3333333332222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..++.. +.........|+++|+||+|. ...
T Consensus 91 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~ 134 (206)
T 2bov_A 91 CVF----------------SITEMESFAATADFREQ------------------ILRVKEDENVPFLLVGNKSDL--EDK 134 (206)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHTTCSCCCEEEEEECTTC--GGG
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEeccCc--ccc
Confidence 111 12222333333232221 222221237899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....+++.+++... +.+++++||++|.|++++.+.....+.
T Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 135 RQVSVEEAKNRAEQW--NVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHh--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333455566666554 578999999999999988766555443
No 169
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.15 E-value=1.6e-11 Score=111.85 Aligned_cols=157 Identities=11% Similarity=0.086 Sum_probs=84.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+. .+.. .....+......+.+|||||.++ +..+...+.+....++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT-IEDSYRKQVEVDCQQCMLEILDTAGTEQ-FTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC-SEEEEEEEEESSSCEEEEEEEEECSSCS-STTHHHHHHHHCSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC-ccceEEEEEEECCEEEEEEEEECCChHH-HHHHHHHHhccCCEEEEE
Confidence 57999999999999999999987554332221 1211 00011111234688999999532 222222222222111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ .+.+.+.+..+..++. .+........+|+++|+||+|. .....
T Consensus 82 ~----------------d~~~~~s~~~~~~~~~------------------~i~~~~~~~~~piilv~nK~Dl--~~~~~ 125 (167)
T 1c1y_A 82 Y----------------SITAQSTFNDLQDLRE------------------QILRVKDTEDVPMILVGNKCDL--EDERV 125 (167)
T ss_dssp E----------------ETTCHHHHHTHHHHHH------------------HHHHHHCCSCCCEEEEEECTTC--GGGCC
T ss_pred E----------------ECCCHHHHHHHHHHHH------------------HHHHhhCcCCCcEEEEEECccc--ccccc
Confidence 1 1122222222222211 1222111247899999999954 33223
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+.+.++++.. ++.+++++||++|.|++++.+..
T Consensus 126 ~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 126 VGKEQGQNLARQW-CNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp SCHHHHHHHHHHT-TSCEEEECBTTTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHc-cCCcEEEecCCCCCCHHHHHHHH
Confidence 3345555555543 36789999999999988775443
No 170
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.15 E-value=2.2e-11 Score=111.27 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=81.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++.+.+..+.....++ .+.+... .+.. ....+.+|||+|.++....+...+.+....++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME--NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC--CcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 47899999999999999999876443332222 1222221 1222 23467899999965432223322222222111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..++.. +.........|+++|+||+|. ...
T Consensus 81 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~ilv~nK~Dl--~~~ 124 (169)
T 3q85_A 81 IVF----------------SVTDRRSFSKVPETLLR------------------LRAGRPHHDLPVILVGNKSDL--ARS 124 (169)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSTTSCCCEEEEEECTTC--GGG
T ss_pred EEE----------------ECCChHHHHHHHHHHHH------------------HHhcccCCCCCEEEEeeCcch--hhc
Confidence 111 12222333333232221 111111137899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....+...++.... +.+++++||+++.|+.++.+...+
T Consensus 125 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 125 REVSLEEGRHLAGTL--SCKHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc--CCcEEEecCccCCCHHHHHHHHHH
Confidence 334455555666554 678999999999999887555443
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.14 E-value=1.8e-10 Score=108.86 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=89.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc---CCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV---PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++|+++|.+|||||||+|+|++........|..+.+...+ ... ...+.++||||...... +. ....+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----~~---~~~~~~ 77 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR----IT---SAYYRG 77 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC----CC---HHHHTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh----hh---HHHHhc
Confidence 36899999999999999999998763333333333222222 111 23577899999753321 11 223467
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|++++|+|.+... .+..+..+...+... ..+ ++||+|+.+...... .....+... ....
T Consensus 78 ~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~---~~a~~l~~~-~~~~ 143 (199)
T 2f9l_A 78 AVGALLVYDIAKHL----------TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT---DEARAFAEK-NNLS 143 (199)
T ss_dssp CSEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH---HHHHHHHHH-TTCE
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH---HHHHHHHHH-cCCe
Confidence 89999999875321 122222222222222 111 899999975443321 222222222 2335
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+||+++.|...+++++.+..
T Consensus 144 ~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 144 FIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 67799999999999999998764
No 172
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.14 E-value=2.6e-10 Score=107.28 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=90.3
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc-ccc-C--CeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN-NKV-P--AFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~-~~~-~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
.++++++|.+|||||||+|+|++........|..+.+...+ ... + ..+.++||||...... + ....++.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----~---~~~~~~~ 101 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA----I---TSAYYRG 101 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC----C---CHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh----h---hHHHhhc
Confidence 47899999999999999999998774333334333332222 111 2 2456799999754321 1 1233467
Q ss_pred CCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhc---ch---hhccccccCcCCCCCccHHHHHHHhhhcCCCc
Q psy17315 172 CDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLR---RS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNL 245 (561)
Q Consensus 172 ~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~ 245 (561)
+|.+++|+|..... .++.+..+...+.... .+ ++||+|+.+..... ......+... ....
T Consensus 102 ~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~---~~~a~~l~~~-~~~~ 167 (191)
T 1oix_A 102 AVGALLVYDIAKHL----------TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP---TDEARAFAEK-NGLS 167 (191)
T ss_dssp CCEEEEEEETTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---HHHHHHHHHH-TTCE
T ss_pred CCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---HHHHHHHHHH-cCCE
Confidence 89999999865211 1222322222222211 11 89999997543322 1222222222 2335
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.+.+||+++.|...+++++.+.
T Consensus 168 ~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 168 FIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHH
Confidence 6779999999999999999765
No 173
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.14 E-value=4.2e-11 Score=111.76 Aligned_cols=164 Identities=13% Similarity=0.142 Sum_probs=91.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh-----------hHhhhcccHHHHHHHHHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII-----------NEELRLKDVEHIEKEINKIEKL 312 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~-----------~~el~l~Dt~Gi~~~~~~l~~~ 312 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+..+......+... ...+.+|||||.++ +..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~ 89 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-FRSLTTA 89 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-GHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-HHHHHHH
Confidence 36799999999999999999998765544333222111101111111 23688999999643 3333333
Q ss_pred HhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEec
Q psy17315 313 VQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVN 392 (561)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~N 392 (561)
+.+....++..+ ++.+.+.+..+..++.. +.........|+++|+|
T Consensus 90 ~~~~~d~~i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 90 FFRDAMGFLLLF----------------DLTNEQSFLNVRNWISQ------------------LQMHAYSENPDIVLCGN 135 (195)
T ss_dssp TTTTCSEEEEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSSSSSCCEEEEEE
T ss_pred HHcCCCEEEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEE
Confidence 332222211111 11112222222222111 22121114789999999
Q ss_pred CChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 393 LSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 393 K~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
|+|. ........+.+.+++... +.+++++||+++.|+.++.+...+.+.+
T Consensus 136 K~Dl--~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 136 KSDL--EDQRAVKEEEARELAEKY--GIPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp CTTC--GGGCCSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred Cccc--ccccccCHHHHHHHHHHc--CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9954 332233345555655544 5789999999999998887665554443
No 174
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.14 E-value=2.7e-11 Score=112.70 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=86.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++.+.+..+..... ++.++ ... .+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYD-PTIED--SYRKQVVIDGETCLLDILDTAGQEE-YSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCC-TTCCE--EEEEEEEETTEEEEEEEEECCCC----CTTHHHHHHHCSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCchh--eEEEEEEECCcEEEEEEEECCCcHH-HHHHHHHHHhcCCEEE
Confidence 579999999999999999999876433222 21121 111 111222 3477899999543 3333333322222211
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+.+.+..+..++.. +.........|+++|+||+|. ..
T Consensus 81 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~i~v~nK~Dl--~~- 123 (189)
T 4dsu_A 81 CVF----------------AINNTKSFEDIHHYREQ------------------IKRVKDSEDVPMVLVGNKCDL--PS- 123 (189)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHTTCSCCCEEEEEECTTS--SS-
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEECccC--cc-
Confidence 111 11222333322222221 222222247899999999954 32
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+.+.++.... +.+++++||++|.|+.++.+...+.+
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 124 RTVDTKQAQDLARSY--GIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CSSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 233344555555544 57899999999999988866655543
No 175
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.14 E-value=3.4e-12 Score=122.75 Aligned_cols=163 Identities=17% Similarity=0.124 Sum_probs=90.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc--chh-hhhHhhhcccHHHH---------HHHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR--DIE-IINEELRLKDVEHI---------EKEINKIE 310 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~--~~~-~~~~el~l~Dt~Gi---------~~~~~~l~ 310 (561)
...+|.+.|.+|+|||+|+|.+++..+ ...++..+|++.... .+. ..+..+.+|||||+ ++.+..+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKR-LAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSS-SSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc-ceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 347899999999999999999998741 123334445542221 222 22357889999996 33333333
Q ss_pred HHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEE
Q psy17315 311 KLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYL 390 (561)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv 390 (561)
..+.+..... +++..|++ .. ..+...+..++..+.. ..+|+++|
T Consensus 107 ~~~~~~~~~~-------------------------d~vi~v~d------~~----~~~~~~~~~~~~~l~~-~~~p~i~v 150 (223)
T 4dhe_A 107 SSYLQTRPQL-------------------------CGMILMMD------AR----RPLTELDRRMIEWFAP-TGKPIHSL 150 (223)
T ss_dssp HHHHHHCTTE-------------------------EEEEEEEE------TT----SCCCHHHHHHHHHHGG-GCCCEEEE
T ss_pred HHHHhcCcCc-------------------------CEEEEEEe------CC----CCCCHHHHHHHHHHHh-cCCCEEEE
Confidence 3322211110 11111111 00 1233444554444433 57999999
Q ss_pred ecCChhhhhhhccchHHHHHHHHHhc-----CCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 391 VNLSAKDYIKKKNKWLPKIKEWVDAN-----DPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 391 ~NK~D~d~~~~~~~~~~~l~~~~~~~-----~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
+||+|...........+.+.+.+... ..+.+++++||++|.|+.+|.+...+
T Consensus 151 ~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 207 (223)
T 4dhe_A 151 LTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIES 207 (223)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred EeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence 99995422111112233344433331 13678999999999999888655443
No 176
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.14 E-value=5.2e-10 Score=110.51 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=87.8
Q ss_pred CCCcEEEEEEcC---------CCCHHHHHHHHhcC---CCcccCCCcc-cccCcccc------------------ccCCe
Q psy17315 94 GTNLKVGIVGVP---------NVGKSTFFNVLTKS---SAAAENFPFC-TIDPNENN------------------KVPAF 142 (561)
Q Consensus 94 ~~~~~v~ivG~p---------nvGKStlin~L~~~---~~~~~~~~~~-T~~~~~~~------------------~~~~~ 142 (561)
...++|+++|.| |||||||+|+|++. .......|.+ +.+..... .....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 345899999999 99999999999984 2322333332 22221110 01234
Q ss_pred EEEEe------CCCcccCCcc---------c-----------------cccccccccc-----cccCCEEEEEecccccc
Q psy17315 143 LNVVD------IAGLVKGAAE---------G-----------------QGLGNAFLSH-----ISACDAIFHLCKEKLRN 185 (561)
Q Consensus 143 i~l~D------tpG~~~~~~~---------~-----------------~~~~~~~l~~-----i~~~D~il~VvD~~~~~ 185 (561)
+.+|| |||....... + .++...|... +++||++++|+|++...
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 67777 6665433221 0 0011111111 12699999999886320
Q ss_pred hhhhccchhhHhhhHHHHHHHHHHh----cch---hhccccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHH
Q psy17315 186 IFFISLNTITIWRNLKLLETRIRDL----RRS---VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKS 258 (561)
Q Consensus 186 ~~~~~~~~~~~~~~~~~l~~~l~~~----~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks 258 (561)
...++.++.+...+... ..+ |+||+|+..... ......+.........+.+|+++|.|+.
T Consensus 177 --------~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~e~SAk~g~gv~ 243 (255)
T 3c5h_A 177 --------NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-----IRDAHTFALSKKNLQVVETSARSNVNVD 243 (255)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-----HHHHHHHHHTSSSCCEEECBTTTTBSHH
T ss_pred --------hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-----HHHHHHHHHhcCCCeEEEEECCCCCCHH
Confidence 01222333322333222 122 899999963211 1122222222234578899999999999
Q ss_pred HHHHHHHhh
Q psy17315 259 TFFNVLTKR 267 (561)
Q Consensus 259 ~l~~~l~~~ 267 (561)
.++++|.+.
T Consensus 244 elf~~l~~~ 252 (255)
T 3c5h_A 244 LAFSTLVQL 252 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 177
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.13 E-value=3.2e-11 Score=110.23 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=85.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+..+.. ...+.. ....+.+|||||.++ +..+...+.+....++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFL-TKKLNIGGKRVNLAIWDTAGQER-FHALGPIYYRDSNGAI 83 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEE-EEEEESSSCEEEEEEEECCCC--------CCSSTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEE-EEEEEECCEEEEEEEEECCCcHh-hhhhHHHHhccCCEEE
Confidence 357999999999999999999988654443333211110 011222 223678999999533 3322222211111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
. +- ++.+.+.+..+..++.. +..... ...|+++|+||+|. ...
T Consensus 84 ~--------------v~--d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piilv~nK~Dl--~~~ 126 (170)
T 1z08_A 84 L--------------VY--DITDEDSFQKVKNWVKE------------------LRKMLG-NEICLCIVGNKIDL--EKE 126 (170)
T ss_dssp E--------------EE--ETTCHHHHHHHHHHHHH------------------HHHHHG-GGSEEEEEEECGGG--GGG
T ss_pred E--------------EE--ECcCHHHHHHHHHHHHH------------------HHHhcC-CCCeEEEEEECccc--ccc
Confidence 1 11 12222333333333222 111111 46899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.....+++.+++... +.+++++||++|.|++++.+...
T Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 127 RHVSIQEAESYAESV--GAKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEEEBTTTTBSHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHH
Confidence 333445566666554 67899999999999888755443
No 178
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.13 E-value=1.7e-12 Score=132.22 Aligned_cols=163 Identities=22% Similarity=0.235 Sum_probs=91.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccch-hhh-hHhhhcccHHHHHHHH--HHHHHHHhhCCcc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDI-EII-NEELRLKDVEHIEKEI--NKIEKLVQRGDKK 319 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~-~~~-~~el~l~Dt~Gi~~~~--~~l~~~~~~~~~~ 319 (561)
-.++++|.+|+|||+|+|++++..+ ..++..++|+ +....+ ... +.++.+|||||+.+.. ..+...+....
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~--~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~-- 86 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA-- 86 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH--
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc--cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH--
Confidence 4699999999999999999999854 3344455554 333332 223 5678999999973210 11111110000
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHH-HHhhhhccCCceEEEecCChhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEH-LNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~-l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
..++ ..+|+++.|++.. ..++..+... +..+.. ...|+++|+||+|.
T Consensus 87 --~~~l-----------------~~aD~il~VvD~~----------~~~~~~~~~~~~~~l~~-~~~pvilV~NK~Dl-- 134 (308)
T 3iev_A 87 --KQSL-----------------EEADVILFMIDAT----------EGWRPRDEEIYQNFIKP-LNKPVIVVINKIDK-- 134 (308)
T ss_dssp --HHHH-----------------HHCSEEEEEEETT----------TBSCHHHHHHHHHHTGG-GCCCEEEEEECGGG--
T ss_pred --HHHh-----------------hcCCEEEEEEeCC----------CCCCchhHHHHHHHHHh-cCCCEEEEEECccC--
Confidence 0000 0012222111110 1234445554 444433 57999999999954
Q ss_pred hhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 399 IKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
........+.+.++.+...+..+++++||++|.|+.+|.+.....
T Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~ 179 (308)
T 3iev_A 135 IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKY 179 (308)
T ss_dssp SSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHh
Confidence 311333444444444433235789999999999998886655443
No 179
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.13 E-value=2.8e-11 Score=115.24 Aligned_cols=163 Identities=17% Similarity=0.081 Sum_probs=87.5
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcccCCcccc---cc---ccc
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQ---GL---GNA 164 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~---~~---~~~ 164 (561)
...+.+|+++|.+|||||||+|+|++.. ..+++.+|+|...... .....+.++||||+........ .+ ...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF-EVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE-EEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE-EecCCEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 3456789999999999999999999876 4567788888753221 1123688999999864211100 00 112
Q ss_pred cccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhhc
Q psy17315 165 FLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGRV 241 (561)
Q Consensus 165 ~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~~ 241 (561)
++...+.+|.+++|+|.+.... ... ..+...+.....+ +.||+|........ ........+....
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~--------~~~---~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~-~~~~~~~~~~~~~ 169 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLK--------DLD---QQMIEWAVDSNIAVLVLLTKADKLASGARK-AQLNMVREAVLAF 169 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCC--------HHH---HHHHHHHHHTTCCEEEEEECGGGSCHHHHH-HHHHHHHHHHGGG
T ss_pred HHHhhhcccEEEEEEECCCCCc--------hhH---HHHHHHHHHcCCCeEEEEecccCCCchhHH-HHHHHHHHHHHhc
Confidence 2333467899999998753210 000 0122223222222 68999987321000 0011222222222
Q ss_pred C-CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 G-TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~-~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
. ....+++||+++.|...++++|.+..
T Consensus 170 ~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 170 NGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 2 23568999999999999999998763
No 180
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.13 E-value=4.1e-11 Score=110.36 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=87.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.... .++.+..-....+.. ....+.+|||||.++ +..+...+.+....++
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-FRAVTRSYYRGAAGAL 92 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSC-TTSCCCCEEEEEEEETTEEEEEEEEECTTGGG-TCHHHHHHHHTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCeEEEEEEEECCCChH-hhhhHHHHhccCCEEE
Confidence 468999999999999999999988654322 222222111111222 224688999999543 3333333333222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+......+..++.. +..... ...|+++|+||+|. ...
T Consensus 93 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piilv~nK~Dl--~~~ 135 (179)
T 1z0f_A 93 MVY----------------DITRRSTYNHLSSWLTD------------------ARNLTN-PNTVIILIGNKADL--EAQ 135 (179)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECTTC--GGG
T ss_pred EEE----------------eCcCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECccc--ccc
Confidence 111 11112222222222211 222211 46899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+++++++... +.+++++||+++.|+.++.+..
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 136 RDVTYEEAKQFAEEN--GLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 333445666666654 6789999999999988775443
No 181
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.13 E-value=3.3e-11 Score=111.22 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=87.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.... .++.+. .. ..+... ...+.+|||||.++ +..+...+.+....+
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~t~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYFVSDY-DPTIED--SYTKICSVDGIPARLDILDTAGQEE-FGAMREQYMRAGHGF 84 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCSSC-CTTCCE--EEEEEEEETTEEEEEEEEECCCTTT-TSCCHHHHHHHCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCcccc-CCCcCc--eEEEEEEECCEEEEEEEEECCCchh-hHHHHHHHHhhCCEE
Confidence 468999999999999999999988543322 221111 11 112222 23678999999532 222222222111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ .+.+.+.+..+..++.. ++.... ....|+++|+||+|. ..
T Consensus 85 i~v~----------------d~~~~~s~~~~~~~~~~-----------------~~~~~~-~~~~piilv~nK~Dl--~~ 128 (181)
T 2fn4_A 85 LLVF----------------AINDRQSFNEVGKLFTQ-----------------ILRVKD-RDDFPVVLVGNKADL--ES 128 (181)
T ss_dssp EEEE----------------ETTCHHHHHHHHHHHHH-----------------HHHHHT-SSCCCEEEEEECGGG--GG
T ss_pred EEEE----------------eCCCHHHHHHHHHHHHH-----------------HHHhcC-CCCCCEEEEEECccc--cc
Confidence 1111 11222333323222221 111111 247899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......+...++.... +.+++++||++|.|+.++.+.....+.
T Consensus 129 ~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 129 QRQVPRSEASAFGASH--HVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp GCCSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 2222334455555444 678999999999999888666555443
No 182
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=4e-11 Score=114.13 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=91.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+++ |. +.. ..+...+ ..+.+|||||.+ .+..+...+.+....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~l~l~Dt~G~~-~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI-GV-DFMIKTVEINGEKVKLQIWDTAGQE-RFRSITQSYYRSANA 101 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCC-SE-EEEEEEEEETTEEEEEEEEEECCSG-GGHHHHGGGSTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc-ce-eEEEEEEEECCEEEEEEEEECCCcH-HHHHHHHHHHhcCCE
Confidence 34689999999999999999999886654433322 11 111 1122222 368899999953 344443333322222
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
++..+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. .
T Consensus 102 ~i~v~----------------D~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piilv~NK~Dl--~ 144 (201)
T 2ew1_A 102 LILTY----------------DITCEESFRCLPEWLRE------------------IEQYAS-NKVITVLVGNKIDL--A 144 (201)
T ss_dssp EEEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECGGG--G
T ss_pred EEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcC-CCCCEEEEEECCCC--c
Confidence 21111 11222333222222221 222211 36899999999954 3
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
.......+.+.+++... +.+++++||++|.|+.++.+.......+.
T Consensus 145 ~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 145 ERREVSQQRAEEFSEAQ--DMYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp GGCSSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 32222344455555443 57899999999999988876665554443
No 183
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.12 E-value=4.8e-11 Score=127.39 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=89.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-C------------------------------cccCCCcccccCcccc--ccCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-A------------------------------AAENFPFCTIDPNENN--KVPA 141 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~------------------------------~~~~~~~~T~~~~~~~--~~~~ 141 (561)
..++|+++|.+|+|||||+|+|++.. . .....+|+|.+..... ....
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 44799999999999999999996532 1 0112357777654432 2245
Q ss_pred eEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhcc
Q psy17315 142 FLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAK 217 (561)
Q Consensus 142 ~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK 217 (561)
.+.++||||.... .......++.+|++++|+|++.......-.......+.+. .+..+..+ ++||
T Consensus 96 ~~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~----~~~~~~v~~iIvviNK 164 (439)
T 3j2k_7 96 HFTILDAPGHKSF-------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAM----LAKTAGVKHLIVLINK 164 (439)
T ss_pred EEEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHH----HHHHcCCCeEEEEeec
Confidence 7999999997532 2234556788999999999864211000000001111111 11222222 8999
Q ss_pred ccccCcCCCCC---ccHHHHHHHhhhcC-----CCcEEEEEccCCCCHHHHHH
Q psy17315 218 ADSKKKMGPKK---TDEGEKKMLLGRVG-----TNLKVGIVGVPNVGKSTFFN 262 (561)
Q Consensus 218 ~D~~~~~~~~~---~~~~~l~~l~~~~~-----~~~~i~isg~~~~Gks~l~~ 262 (561)
+|+........ ....++..+..... ..+.+.+||++|.|+..+..
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99863211000 11122233332222 34689999999999988543
No 184
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.12 E-value=1.4e-11 Score=114.32 Aligned_cols=158 Identities=14% Similarity=0.072 Sum_probs=85.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+.. .+.++.+..- ...+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~~~~-- 81 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFVD-SYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE-YSIFPQTYSIDINGY-- 81 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCT-TCCCCGGGTTTCSEE--
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCCccccE-EEEEEECCEEEEEEEEeCCCchh-hhHHHHHHHhcCCEE--
Confidence 579999999999999999999775432 2333223221 11122222 4578999999532 111111111111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++- .+.+.+.+..+..++.. +.........|+++|+||+|. ....
T Consensus 82 ------------i~v~--d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~ilv~nK~Dl--~~~~ 127 (181)
T 3t5g_A 82 ------------ILVY--SVTSIKSFEVIKVIHGK------------------LLDMVGKVQIPIMLVGNKKDL--HMER 127 (181)
T ss_dssp ------------EEEE--ETTCHHHHHHHHHHHHH------------------HHHHC----CCEEEEEECTTC--TTTC
T ss_pred ------------EEEE--ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--hhcc
Confidence 1111 12222333333333221 111111247899999999954 3323
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+.+.++++.. +.+++++||+++.|+.++.+...+.
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 166 (181)
T 3t5g_A 128 VISYEEGKALAESW--NAAFLESSAKENQTAVDVFRRIILE 166 (181)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHh--CCcEEEEecCCCCCHHHHHHHHHHH
Confidence 33455666666655 6789999999999998876554443
No 185
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.12 E-value=1.7e-10 Score=121.93 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=89.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCcccc-----------------------c--cCCeEEEE
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNENN-----------------------K--VPAFLNVV 146 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~~-----------------------~--~~~~i~l~ 146 (561)
..++|+++|.+|+|||||+|+|++.. ......+|.|.+..... . ....+.++
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45799999999999999999999764 22223467776542110 0 01468999
Q ss_pred eCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhccccccC
Q psy17315 147 DIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAKADSKK 222 (561)
Q Consensus 147 DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK~D~~~ 222 (561)
||||... +...+...+..+|++++|+|++... +.....+.+..+ ..+.. + ++||+|+..
T Consensus 87 DtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~------~~~qt~e~l~~~----~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 87 DSPGHET-------LMATMLSGASLMDGAILVIAANEPC------PQPQTKEHLMAL----EILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp ECSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCS------SCHHHHHHHHHH----HHTTCCCEEEEEECTTSSC
T ss_pred ECCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCC------CCchhHHHHHHH----HHcCCCeEEEEEEccCCCC
Confidence 9999642 2223455567899999999886311 011122222221 22222 2 899999986
Q ss_pred cCCCCCccHHHHHHHhhhc--CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 223 KMGPKKTDEGEKKMLLGRV--GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 223 ~~~~~~~~~~~l~~l~~~~--~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
...... ...++..+.... ...+.+.+||++|.|+..|+++|.+..
T Consensus 150 ~~~~~~-~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 150 EKQAEE-NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTTTTT-HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHH-HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 443211 223333433321 345789999999999999999998864
No 186
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.12 E-value=1.5e-11 Score=116.61 Aligned_cols=163 Identities=14% Similarity=0.077 Sum_probs=86.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccc-cccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVN-PVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~d-p~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
...+|.+.|.+|+|||+|++.+.+..+..... ++.+... ....+......+.+|||||.++ +..+...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~---- 96 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD-PTVENTYSKIVTLGKDEFHLHLVDTAGQDE-YSILPYSFIIGV---- 96 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC-CCSEEEEEEEEC----CEEEEEEEECCCCT-TCCCCGGGTTTC----
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC-CccceEEEEEEEECCEEEEEEEEECCCccc-hHHHHHHHHhcC----
Confidence 45689999999999999999999986553322 2222111 1111222234578999999432 111111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
|...++- .+.+.+.+..+..++.. +........+|+++|+||+|. ...
T Consensus 97 ----------d~~i~v~--d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~ 144 (201)
T 3oes_A 97 ----------HGYVLVY--SVTSLHSFQVIESLYQK------------------LHEGHGKTRVPVVLVGNKADL--SPE 144 (201)
T ss_dssp ----------CEEEEEE--ETTCHHHHHHHHHHHHH------------------HHC-----CCCEEEEEECTTC--GGG
T ss_pred ----------CEEEEEE--eCCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccC--ccc
Confidence 1111111 12222333333333222 111111136899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.........++.... +.+++++||++|.|++++.+...+.+.
T Consensus 145 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 145 REVQAVEGKKLAESW--GATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHh--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333334455555544 678999999999999888766655443
No 187
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.12 E-value=9.3e-12 Score=133.85 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=75.8
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
+...+|.+.|.+|+|||+|+|.+++.. ...++..+||+ |... .+...+..+.+|||||+++.-+.++....+....
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~--~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQE--RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC--------------------C
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 456789999999999999999999873 33445555664 4432 2344556799999999865322222221111111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCH----HHHHHHHhhhhccCCceEEEecCCh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSN----ADIEHLNKLNLLTAKTQIYLVNLSA 395 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~----~e~~~l~~~~~l~~kP~iiv~NK~D 395 (561)
.+..+|+++.|++... ..+. .+..++..+ ..+|+++|+||+|
T Consensus 309 ---------------------~~~~aD~vl~VvD~s~----------~~s~~~~~~~~~~l~~l---~~~piIvV~NK~D 354 (476)
T 3gee_A 309 ---------------------KMAEADLILYLLDLGT----------ERLDDELTEIRELKAAH---PAAKFLTVANKLD 354 (476)
T ss_dssp ---------------------CCSSCSEEEEEEETTT----------CSSGGGHHHHHHHHHHC---TTSEEEEEEECTT
T ss_pred ---------------------hcccCCEEEEEEECCC----------CcchhhhHHHHHHHHhc---CCCCEEEEEECcC
Confidence 1122244333332111 1122 333444433 3799999999995
Q ss_pred hhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 396 KDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 396 ~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
. ..... .. .+++.+.. ..+++++||++|.|+++|.+...+.+.
T Consensus 355 l--~~~~~--~~-~~~l~~~~--~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 355 R--AANAD--AL-IRAIADGT--GTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp S--CTTTH--HH-HHHHHHHH--TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred C--CCccc--hh-HHHHHhcC--CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 4 32111 11 12222211 357999999999999998776655443
No 188
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.11 E-value=2.1e-11 Score=113.29 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=86.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ +.. ....+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTI-EDS-YLKHTEIDNQWAILDVLDTAGQEE-FSAMREQYMRTGDGFL 94 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC-CEE-EEEEEEETTEEEEEEEEECCSCGG-GCSSHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cce-eEEEEEeCCcEEEEEEEECCCchh-hHHHHHHHHhcCCEEE
Confidence 4679999999999999999999875443332221 111 111112222 3466799999532 2222222222221111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..++.. +.........|+++|+||+|. ...
T Consensus 95 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~p~ilv~nK~Dl--~~~ 138 (183)
T 3kkq_A 95 IVY----------------SVTDKASFEHVDRFHQL------------------ILRVKDRESFPMILVANKVDL--MHL 138 (183)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHHTSSCCCEEEEEECTTC--STT
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEECCCc--hhc
Confidence 111 12222333322222221 211122247899999999954 322
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechh-hhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGV-FEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~-~~~gl~~L~~~~~~ 442 (561)
.....+.+.+++... +.+++++||+ ++.|++++.+...+
T Consensus 139 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~~v~~l~~~l~~ 178 (183)
T 3kkq_A 139 RKVTRDQGKEMATKY--NIPYIETSAKDPPLNVDKTFHDLVR 178 (183)
T ss_dssp CCSCHHHHHHHHHHH--TCCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHh--CCeEEEeccCCCCCCHHHHHHHHHH
Confidence 333445555665554 5789999999 99999887655443
No 189
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.11 E-value=4.3e-11 Score=112.79 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=88.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+. .++. -...+ ......+.+|||||.++ ..+...+.+....+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~d~i 102 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT-LEST-YRHQATIDDEVVSMEILDTAGQED--TIQREGHMRWGEGF 102 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT-CCEE-EEEEEEETTEEEEEEEEECCCCCC--CHHHHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCC-CCce-EEEEEEECCEEEEEEEEECCCCCc--ccchhhhhccCCEE
Confidence 3468999999999999999999998654332222 2221 11112 12234588999999644 22222222222221
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++. .+.........|+++|+||+|. ..
T Consensus 103 ilv~----------------D~~~~~s~~~~~~~~~------------------~i~~~~~~~~~piilv~NK~Dl--~~ 146 (196)
T 2atv_A 103 VLVY----------------DITDRGSFEEVLPLKN------------------ILDEIKKPKNVTLILVGNKADL--DH 146 (196)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHH------------------HHHHHHTTSCCCEEEEEECGGG--GG
T ss_pred EEEE----------------ECcCHHHHHHHHHHHH------------------HHHHhhCCCCCcEEEEEECccc--cc
Confidence 1111 1222233322222221 1222222247899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhh-hhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEH-QLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~-gl~~L~~~~~~~~ 444 (561)
......++..+++... +.+++++||+++. |+.++.+...+.+
T Consensus 147 ~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 147 SRQVSTEEGEKLATEL--ACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp GCCSCHHHHHHHHHHH--TSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHh--CCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 2233344555555544 6789999999999 9988766554443
No 190
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.10 E-value=1.6e-10 Score=114.68 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccc--c
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSH--I 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~--i 169 (561)
..++|+++|.+|||||||+|+|++.. ..+++++++|....... ..+..+.+|||||+.............+... .
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence 45899999999999999999999988 57888899988765542 2345799999999976543211111111111 1
Q ss_pred ccCCEEEEEeccc
Q psy17315 170 SACDAIFHLCKEK 182 (561)
Q Consensus 170 ~~~D~il~VvD~~ 182 (561)
..+|++++|+|..
T Consensus 115 ~~~~~il~V~~~d 127 (262)
T 3def_A 115 RTIDVLLYVDRLD 127 (262)
T ss_dssp CEECEEEEEEESS
T ss_pred CCCCEEEEEEcCC
Confidence 3789999997543
No 191
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.10 E-value=3.7e-11 Score=129.88 Aligned_cols=155 Identities=17% Similarity=0.055 Sum_probs=87.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-------------------------------CcccCCCcccccCcccc--ccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-------------------------------AAAENFPFCTIDPNENN--KVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-------------------------------~~~~~~~~~T~~~~~~~--~~~ 140 (561)
...++|+++|.+|+|||||+|+|++.. ......+|+|.+..... ...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 455899999999999999999997551 11223457777654432 234
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N 216 (561)
..+.++||||... +.......++.+|++++|+|++...... ......+.......+..+... ++|
T Consensus 111 ~~~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g~~~~----~~~~~~qt~e~~~~~~~~~~~~iIvviN 179 (483)
T 3p26_A 111 ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFES----GFDLDGQTKEHMLLASSLGIHNLIIAMN 179 (483)
T ss_dssp CEEEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred ceEEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCCcccc----ccchhhhHHHHHHHHHHcCCCcEEEEEE
Confidence 5799999999843 2234456678999999999986422110 000000111111122223322 899
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHHH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKST 259 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks~ 259 (561)
|+|+.+..... ......+..+..... ..+.+.+||++|.|+..
T Consensus 180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99998421100 001112222222222 34679999999999864
No 192
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.09 E-value=6e-11 Score=109.58 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=83.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+....+.++.+. +... .+... ...+.+|||||.++ +..+...+.+....+
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGI-DFRNKVLDVDGVKVKLQMWDTAGQER-FRSVTHAYYRDAHAL 87 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSC-EEEEEEEEETTEEEEEEEEECCCC---------CCGGGCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceee-EEEEEEEEECCEEEEEEEEeCCCcHH-HHHHHHHHccCCCEE
Confidence 3579999999999999999999986643333222221 1111 11122 23688999999543 333332222211111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+...+..+..++. .+..... ...|+++|+||+|. ..
T Consensus 88 i~v~----------------d~~~~~s~~~~~~~~~------------------~i~~~~~-~~~piilv~nK~Dl--~~ 130 (180)
T 2g6b_A 88 LLLY----------------DVTNKASFDNIQAWLT------------------EIHEYAQ-HDVALMLLGNKVDS--AH 130 (180)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHH------------------HHHHHSC-TTCEEEEEEECCST--TS
T ss_pred EEEE----------------ECCCHHHHHHHHHHHH------------------HHHHhCC-CCCcEEEEEECccc--Cc
Confidence 1111 1111122222222211 1222211 46899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+...+++... +.+++++||+++.|++++.+...+
T Consensus 131 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (180)
T 2g6b_A 131 ERVVKREDGEKLAKEY--GLPFMETSAKTGLNVDLAFTAIAK 170 (180)
T ss_dssp CCCSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 2222344455555444 578999999999999887555443
No 193
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.09 E-value=4.1e-11 Score=109.48 Aligned_cols=156 Identities=14% Similarity=0.214 Sum_probs=83.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+.+..++.....+......+.+|||||.++ +..+...+.+....++..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~~~~i~v~ 82 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ-FPAMQRLSISKGHAFILVY 82 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS-CHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchh-hHHHHHHhcccCCEEEEEE
Confidence 579999999999999999999876654444433322211111122224688999999543 2333333222222111111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh-hccCCceEEEecCChhhhhhhcc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN-LLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~-~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
.+.+...+..+..++ ..+.... .....|+++|+||+|. .....
T Consensus 83 ----------------d~~~~~~~~~~~~~~------------------~~i~~~~~~~~~~pii~v~nK~Dl--~~~~~ 126 (172)
T 2erx_A 83 ----------------SITSRQSLEELKPIY------------------EQICEIKGDVESIPIMLVGNKCDE--SPSRE 126 (172)
T ss_dssp ----------------ETTCHHHHHTTHHHH------------------HHHHHHHC---CCCEEEEEECGGG--GGGCC
T ss_pred ----------------ECcCHHHHHHHHHHH------------------HHHHHHhCCCCCCCEEEEEEcccc--ccccc
Confidence 111112211111111 1121111 1136899999999954 33222
Q ss_pred chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 404 KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.......++.... +.+++++||++|.|++++.+.
T Consensus 127 v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 127 VQSSEAEALARTW--KCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp SCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHH
T ss_pred cCHHHHHHHHHHh--CCeEEEecCCCCcCHHHHHHH
Confidence 2233344444443 578999999999998777443
No 194
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.09 E-value=8.3e-11 Score=111.27 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=91.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh--hhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE--IINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~--~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |..-....+. .....+.+|||||.++ +..+...+.+....++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV-GIDFKVKTIYRNDKRIKLQIWDTAGLER-YRTITTAYYRGAMGFI 85 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC-SEEEEEEEEEETTEEEEEEEEEECCSGG-GHHHHHTTGGGCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc-ceeEEEEEEEECCeEEEEEEEECCCchh-hcchHHHhhcCCCEEE
Confidence 3679999999999999999999986654433332 3211111121 1234688999999643 3333333332222211
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..++.. +.... ....|+++|+||+|. ...
T Consensus 86 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~piilv~nK~Dl--~~~ 128 (203)
T 1zbd_A 86 LMY----------------DITNEESFNAVQDWSTQ------------------IKTYS-WDNAQVLLVGNKCDM--EDE 128 (203)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHS-CSSCEEEEEEECTTC--TTS
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhc-CCCCCEEEEEECccc--Ccc
Confidence 111 11222333333232221 21111 147899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....+.+.+++... +.+++++||++|.|+.++.+.....+.
T Consensus 129 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 129 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 223344555555544 578999999999999888666554433
No 195
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.09 E-value=1.3e-10 Score=108.65 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=88.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH---------HHHHHHHHHHHh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI---------EKEINKIEKLVQ 314 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi---------~~~~~~l~~~~~ 314 (561)
..+|.+.|.+|+|||+|++.+.+.. ...+.+++|++... .....+.++.+|||||+ +..+..+...+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~t~~~-~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK--IAFVSKTPGKTRSI-NFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC--CSCCCSSCCCCCCE-EEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc--cccccCCCCCccCe-EEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 4689999999999999999999885 33444444544111 11223457889999994 333444333332
Q ss_pred hCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCC
Q psy17315 315 RGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLS 394 (561)
Q Consensus 315 ~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~ 394 (561)
+..... +++..|. + . .......+...+..+.. ...|+++|+||+
T Consensus 100 ~~~~~~-------------------------~~vi~v~----d--~----~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~ 143 (195)
T 3pqc_A 100 KNRWSL-------------------------QMVFLLV----D--G----RIPPQDSDLMMVEWMKS-LNIPFTIVLTKM 143 (195)
T ss_dssp HHCTTE-------------------------EEEEEEE----E--T----TSCCCHHHHHHHHHHHH-TTCCEEEEEECG
T ss_pred hcCcCc-------------------------eEEEEEe----c--C----CCCCCHHHHHHHHHHHH-cCCCEEEEEECh
Confidence 222110 0000000 0 0 01122333333333322 479999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 395 D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
|...........+.+.+.+... ...+++++||++|.|+.++.+..
T Consensus 144 Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l 188 (195)
T 3pqc_A 144 DKVKMSERAKKLEEHRKVFSKY-GEYTIIPTSSVTGEGISELLDLI 188 (195)
T ss_dssp GGSCGGGHHHHHHHHHHHHHSS-CCSCEEECCTTTCTTHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHhhc-CCCceEEEecCCCCCHHHHHHHH
Confidence 5421111223344555555542 24689999999999988875543
No 196
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.08 E-value=5.5e-11 Score=128.11 Aligned_cols=155 Identities=11% Similarity=0.100 Sum_probs=96.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISAC 172 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~ 172 (561)
++++|+++|.+|+|||||+++|++.....+..+|+|.+..... ..+..+.||||||...... .....++.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~-------~~~~~~~~a 75 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS-------MRARGAQAT 75 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT-------SBCSSSBSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH-------HHHHHHhhC
Confidence 4578999999999999999999986654555678887654321 2235789999999754332 223456889
Q ss_pred CEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCC-ccHHHHHHHhhhc-CCCcEE
Q psy17315 173 DAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKK-TDEGEKKMLLGRV-GTNLKV 247 (561)
Q Consensus 173 D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~-~~~~~l~~l~~~~-~~~~~i 247 (561)
|++++|+|++.... ....+.+. .+.....+ +.||+|+........ ........+.... ...+.+
T Consensus 76 D~aILVVda~~g~~-------~qT~e~l~----~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 76 DIVVLVVAADDGVM-------PQTIEAIQ----HAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFV 144 (501)
T ss_dssp SSEEEEEETTTBSC-------TTTHHHHH----HHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEE
T ss_pred CEEEEEeecccCcc-------HHHHHHHH----HHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEE
Confidence 99999998763210 11111111 12222233 899999975321100 0000000000111 124689
Q ss_pred EEEccCCCCHHHHHHHHHhh
Q psy17315 248 GIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 248 ~isg~~~~Gks~l~~~l~~~ 267 (561)
.+||++|.|+..|++++...
T Consensus 145 ~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 145 HVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp ECCTTTCTTCTTHHHHTTTT
T ss_pred EEeeeeccCcchhhhhhhhh
Confidence 99999999999999999764
No 197
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.08 E-value=1.2e-10 Score=110.61 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=89.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc-ccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP-VRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp-~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+||++|++.+.+..+.....+.+ | .+. ...+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI-G-VDFTMKTLEIQGKRVKLQIWDTAGQER-FRTITQSYYRSANGA 105 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGG-GHHHHHHHHTTCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCc-c-eEEEEEEEEECCEEEEEEEEECCCcHh-HHHHHHHHHhhCCEE
Confidence 4679999999999999999999886543322221 1 111 11222222 4688999999543 444444444333322
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++.. +.... ....|+++|+||+|. ..
T Consensus 106 ilv~----------------D~~~~~s~~~~~~~~~~------------------i~~~~-~~~~piilv~NK~Dl--~~ 148 (201)
T 2hup_A 106 ILAY----------------DITKRSSFLSVPHWIED------------------VRKYA-GSNIVQLLIGNKSDL--SE 148 (201)
T ss_dssp EEEE----------------ETTBHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECTTC--GG
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhc-CCCCCEEEEEECCcc--cc
Confidence 2211 12222333333232221 22111 146899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......+++.+++... +. +++++||+++.|++++.+.....+.
T Consensus 149 ~~~v~~~~~~~~~~~~--~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 149 LREVSLAEAQSLAEHY--DILCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp GCCSCHHHHHHHHHHT--TCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2233345666666554 55 8999999999999888665554443
No 198
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.08 E-value=5.7e-11 Score=111.42 Aligned_cols=162 Identities=17% Similarity=0.229 Sum_probs=91.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ +. +.. ..+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI-GV-DFKIRTIELDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGI 92 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCS-SE-EEEEEEEEETTEEEEEEEEEECCSGG-GCTTHHHHHTTCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc-cc-eEEEEEEEECCEEEEEEEEECCCcHh-hhhhHHHHHhhCCEE
Confidence 3579999999999999999999886554443332 21 111 1222222 4688999999532 322222322222211
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. ..
T Consensus 93 i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~p~ilv~nK~Dl--~~ 135 (196)
T 3tkl_A 93 IVVY----------------DVTDQESFNNVKQWLQE------------------IDRYAS-ENVNKLLVGNKCDL--TT 135 (196)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECTTC--TT
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcC-CCCCEEEEEECccc--cc
Confidence 1111 11222222222222211 222221 36899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDE 447 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~ 447 (561)
......+...++.... +.+++++||++|.|+.++.+...+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 136 KKVVDYTTAKEFADSL--GIPFLETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp TCCSCHHHHHHHHHHT--TCCEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2333344555555554 67899999999999988866665554443
No 199
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.07 E-value=1.2e-10 Score=108.85 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=82.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++.+.+..+..... .+.+. .. ..+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIED--SYRKQVVIDGETCLLDILDTAGQEE-YSAMRDQYMRTGEGFL 97 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCCC-TTCCE--EEEEEEEETTEEEEEEEEECCC------------CTTCSEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCccccC-Cccce--EEEEEEEECCEEEEEEEEECCChHH-HHHHHHHhhCcCCEEE
Confidence 579999999999999999999876443222 21111 11 1122222 3588999999543 3333333322222211
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+...+..+..++.. +.........|+++|+||+|. ..
T Consensus 98 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~p~ilv~nK~Dl--~~- 140 (190)
T 3con_A 98 CVF----------------AINNSKSFADINLYREQ------------------IKRVKDSDDVPMVLVGNKCDL--PT- 140 (190)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHHHHTCSCCCEEEEEECTTC--SC-
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHHhCCCCCeEEEEEECCcC--Cc-
Confidence 111 11222222222222211 222221236899999999954 22
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+.+.++++.. +.+++++||+++.|+.++.+...+.+
T Consensus 141 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 141 RTVDTKQAHELAKSY--GIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CCSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 223344555555554 56899999999999988766554443
No 200
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.07 E-value=7.7e-11 Score=124.75 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=95.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC---CcccCCCcccccCcccc--c-----------------------cCCeEEEE
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS---AAAENFPFCTIDPNENN--K-----------------------VPAFLNVV 146 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~---~~~~~~~~~T~~~~~~~--~-----------------------~~~~i~l~ 146 (561)
..++|+++|.+|+|||||+|+|++.. ......+|.|.+..... . ....+.++
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34789999999999999999999764 22233467776543110 0 01468999
Q ss_pred eCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhccccccC
Q psy17315 147 DIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAKADSKK 222 (561)
Q Consensus 147 DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK~D~~~ 222 (561)
||||... +...+...+..+|++++|+|++... +.....+.+..+ ..+.. + +.||+|+..
T Consensus 89 DtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~------~~~qt~e~l~~~----~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 89 DAPGHEA-------LMTTMLAGASLMDGAILVIAANEPC------PRPQTREHLMAL----QIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp ECSSHHH-------HHHHHHHCGGGCSEEEEEEETTSCS------SCHHHHHHHHHH----HHHTCCCEEEEEECGGGSC
T ss_pred ECCChHH-------HHHHHHhhhhhCCEEEEEEECCCCC------CChhHHHHHHHH----HHcCCCcEEEEEECccCCC
Confidence 9999642 2223455667899999999886310 011222333222 22222 2 799999974
Q ss_pred cCCCCCccHHHHHHHhhh--cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 223 KMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 223 ~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..... ....++..+... ....+.+.+||++|.|+..|+++|.+..
T Consensus 152 ~~~~~-~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 152 KEKAL-ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHH-HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHH-HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 32100 011122222222 1345789999999999999999998864
No 201
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.07 E-value=8.5e-11 Score=107.09 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=84.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++++.+..+.....+. .|..-....+ ......+.+|||||.++ +..+...+.+....++.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQEST-IGAAFLTQTVCLDDTTVKFEIWDTAGQER-YHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-SSEEEEEEEEEETTEEEEEEEEEECCSGG-GGGGHHHHHTTCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cceEEEEEEEEECCEEEEEEEEeCCCcHH-hhhhhHHhccCCCEEEE
Confidence 57999999999999999999987654332222 2221111112 12234688999999543 33332232222221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. ....
T Consensus 85 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~~iilv~nK~Dl--~~~~ 127 (170)
T 1r2q_A 85 VY----------------DITNEESFARAKNWVKE------------------LQRQAS-PNIVIALSGNKADL--ANKR 127 (170)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHSC-TTCEEEEEEECGGG--GGGC
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECccC--cccc
Confidence 11 11222222222222221 111111 36899999999954 3222
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
....+++.+++... +.+++++||++|.|++++.+.
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 128 AVDFQEAQSYADDN--SLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHH
Confidence 33345555665554 678999999999998777443
No 202
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.07 E-value=4.8e-11 Score=112.82 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=88.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+++..+.....+.++ .+... .+.+. ...+.+|||+|..+....+...+.+....+
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP--EDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSC--TTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcc--cceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 46899999999999999999986543322222221 11111 12222 245788999996432222333333222222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..|+.+ +.........|+++|+||+|. ..
T Consensus 101 ilv~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~ 144 (195)
T 3cbq_A 101 LIVF----------------SVTDRRSFSKVPETLLR------------------LRAGRPHHDLPVILVGNKSDL--AR 144 (195)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSTTSCCCEEEEEECTTC--TT
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEeechhc--cc
Confidence 1111 12222333333333221 111111137899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
......++..+++... +.+++++||+++.|++++.+...+.
T Consensus 145 ~~~v~~~~~~~~a~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~ 185 (195)
T 3cbq_A 145 SREVSLEEGRHLAGTL--SCKHIETSAALHHNTRELFEGAVRQ 185 (195)
T ss_dssp TCCSCHHHHHHHHHHT--TCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHh--CCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 2233345555565554 5789999999999998886655443
No 203
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.07 E-value=1.2e-10 Score=111.59 Aligned_cols=163 Identities=13% Similarity=0.179 Sum_probs=94.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh------------hHhhhcccHHHHHHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII------------NEELRLKDVEHIEKEINKI 309 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~------------~~el~l~Dt~Gi~~~~~~l 309 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+.+ + .+.. ..+.+. ...+.+|||||.++ +..+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~ 100 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV-G-IDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-FRSL 100 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEE-E-EEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-HHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCce-e-EEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-HHhH
Confidence 34689999999999999999999876543322221 1 1111 111111 34688999999654 4444
Q ss_pred HHHHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEE
Q psy17315 310 EKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIY 389 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~ii 389 (561)
...+.+....++..+ ++.+.+.+..+..++.. .. .......+|+++
T Consensus 101 ~~~~~~~~d~iilV~----------------D~~~~~s~~~~~~~l~~--i~----------------~~~~~~~~piil 146 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMF----------------DLTSQQSFLNVRNWMSQ--LQ----------------ANAYCENPDIVL 146 (217)
T ss_dssp HHHHHTTCCEEEEEE----------------ETTCHHHHHHHHHHHHT--CC----------------CCCTTTCCEEEE
T ss_pred HHHHhcCCCEEEEEE----------------ECcCHHHHHHHHHHHHH--HH----------------HhcCcCCCCEEE
Confidence 444443332222111 12223334444444433 10 001114689999
Q ss_pred EecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 390 LVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 390 v~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
|+||+|. ........+.+.+++... +.+++++||+++.|+.++.+...+.+.+
T Consensus 147 V~NK~Dl--~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 147 IGNKADL--PDQREVNERQARELADKY--GIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEECTTC--GGGCCSCHHHHHHHHHHT--TCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEECCcc--ccccccCHHHHHHHHHHC--CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999954 332233345566666554 6789999999999998887666554443
No 204
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.07 E-value=3.1e-12 Score=129.77 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=85.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccch-hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDI-EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~-~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+++.|.+|+|||||+|++++..+ +.++..++|+ +.+..+ ...+.++.+|||||+.+....+...+.... .
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~--~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~----~ 81 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKV--APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEV----Y 81 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHH----H
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce--eeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHH----H
Confidence 4699999999999999999999854 3344445554 333322 223467899999997531111111110000 0
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhc-cCCceEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLL-TAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l-~~kP~iiv~NK~D~d~~~~ 401 (561)
.+ +..+|+++.|++.. ..++..+..++..+... ..+|+++|+||+|. ..
T Consensus 82 ~~-----------------l~~ad~il~VvD~~----------~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl--~~- 131 (301)
T 1wf3_A 82 EA-----------------LADVNAVVWVVDLR----------HPPTPEDELVARALKPLVGKVPILLVGNKLDA--AK- 131 (301)
T ss_dssp HH-----------------TSSCSEEEEEEETT----------SCCCHHHHHHHHHHGGGTTTSCEEEEEECGGG--CS-
T ss_pred HH-----------------HhcCCEEEEEEECC----------CCCChHHHHHHHHHHhhcCCCCEEEEEECccc--CC-
Confidence 00 01112222222210 01233343333333221 26899999999954 32
Q ss_pred ccc-hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 402 KNK-WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 ~~~-~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
... ..+.++++ .++.+++++||++|.|+++|.+...
T Consensus 132 ~~~~~~~~~~~~----~~~~~~~~iSA~~g~gv~~l~~~l~ 168 (301)
T 1wf3_A 132 YPEEAMKAYHEL----LPEAEPRMLSALDERQVAELKADLL 168 (301)
T ss_dssp SHHHHHHHHHHT----STTSEEEECCTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHh----cCcCcEEEEeCCCCCCHHHHHHHHH
Confidence 111 22333332 2356899999999999887755543
No 205
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.06 E-value=1.1e-10 Score=108.39 Aligned_cols=161 Identities=15% Similarity=0.195 Sum_probs=91.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+++ + .+.. ..+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI-G-VEFGSKIINVGGKYVKLQIWDTAGQER-FRSVTRSYYRGAAGA 86 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCS-E-EEEEEEEEEETTEEEEEEEEEECCSGG-GHHHHHTTSTTCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc-c-eEEEEEEEEECCEEEEEEEEeCCCcHH-HHHHHHHHHhcCCEE
Confidence 3689999999999999999999886554333221 1 1111 1122222 4688999999543 333333332222211
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. ..
T Consensus 87 i~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piilv~nK~Dl--~~ 129 (186)
T 2bme_A 87 LLVY----------------DITSRETYNALTNWLTD------------------ARMLAS-QNIVIILCGNKKDL--DA 129 (186)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHSC-TTCEEEEEEECGGG--GG
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECccc--cc
Confidence 1111 11222222222222211 222211 46899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
......++..+++... +.+++++||++|.|+.++.+.......+
T Consensus 130 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 130 DREVTFLEASRFAQEN--ELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp GCCSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 2233344555555554 6789999999999998886665554443
No 206
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.06 E-value=2.2e-10 Score=110.00 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=86.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccC-CCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFE-DDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~-~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..+|.+.|.+|+|||+|++++++.... ...+++ .|. +.. ..+.+.+ ..+.+|||+|.......+...+.+....
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~-~g~-d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-LGE-DTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCT-TEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc-cce-eeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 367999999999999999999864321 122222 121 111 1122222 3467899998654222333333222222
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
.+..+ .+.+.+.+..+..+... +.........|+|+|+||+|. .
T Consensus 115 ~ilVy----------------dvt~~~sf~~~~~~~~~------------------l~~~~~~~~~piilVgNK~DL--~ 158 (211)
T 2g3y_A 115 YLIVY----------------SITDRASFEKASELRIQ------------------LRRARQTEDIPIILVGNKSDL--V 158 (211)
T ss_dssp EEEEE----------------ETTCHHHHHHHHHHHHH------------------HHTSGGGTTSCEEEEEECTTC--G
T ss_pred EEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHHhCCCCCcEEEEEEChHH--h
Confidence 21111 23333444433333221 222111136899999999954 3
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.......++...++... +.+++++||++|.|++++.+.....+
T Consensus 159 ~~r~v~~~e~~~~a~~~--~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 159 RCREVSVSEGRACAVVF--DCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp GGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCceEeHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22222233333444333 57899999999999988866655443
No 207
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.06 E-value=7.2e-11 Score=107.50 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=83.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |. +.. ..+.. ....+.+|||||.++ +..+...+.+....+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI-GV-DFLERQIQVNDEDVRLMLWDTAGQEE-FDAITKAYYRGAQAC 81 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCC-SS-SEEEEEEEETTEEEEEEEECCTTGGG-TTCCCHHHHTTCCEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce-EE-EEEEEEEEECCEEEEEEEEcCCCcHh-HHHHHHHHhcCCCEE
Confidence 3579999999999999999999876544333221 11 111 11222 224688999999432 211111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++.. +.... ...|+++|+||+|. ..
T Consensus 82 i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~--~~~piilv~nK~Dl--~~ 123 (168)
T 1z2a_A 82 VLVF----------------STTDRESFEAISSWREK------------------VVAEV--GDIPTALVQNKIDL--LD 123 (168)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHH--CSCCEEEEEECGGG--GG
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECccc--Cc
Confidence 1110 11111222222222111 11111 37899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
......+.+.+++... +.+++++||+++.|++++.+...
T Consensus 124 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 124 DSCIKNEEAEGLAKRL--KLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp GCSSCHHHHHHHHHHH--TCEEEECBTTTTBSSHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHH
Confidence 2233345555665554 67899999999999877754443
No 208
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.06 E-value=2.1e-11 Score=114.38 Aligned_cols=159 Identities=22% Similarity=0.234 Sum_probs=80.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH---------HHHHHHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI---------EKEINKIEKLV 313 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi---------~~~~~~l~~~~ 313 (561)
...+|.+.|.+|+|||+|++.+.+..+. ..+...+|++.....+ ..+..+.+|||||+ ++.+..+...+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFY-IINDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEE-EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cccCCCCCceeeEEEE-EECCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 3478999999999999999999987432 2233334443111111 12447899999994 23343333333
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
.+..... +++..|.+ .. ...+..+...+..... ...|+++|+||
T Consensus 100 ~~~~~~~-------------------------~~~i~v~d------~~----~~~~~~~~~~~~~~~~-~~~p~i~v~nK 143 (195)
T 1svi_A 100 ITTREEL-------------------------KAVVQIVD------LR----HAPSNDDVQMYEFLKY-YGIPVIVIATK 143 (195)
T ss_dssp HHHCTTE-------------------------EEEEEEEE------TT----SCCCHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred HhhhhcC-------------------------CEEEEEEE------CC----CCCCHHHHHHHHHHHH-cCCCEEEEEEC
Confidence 2211100 01000000 00 1123333333333222 47899999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
+|...........+++.+.+... .+.+++++||+++.|+.++.+..
T Consensus 144 ~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l 189 (195)
T 1svi_A 144 ADKIPKGKWDKHAKVVRQTLNID-PEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHTCC-TTSEEEECCTTTCTTHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHccc-CCCceEEEEccCCCCHHHHHHHH
Confidence 95421111111223444433321 25789999999999988775443
No 209
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.06 E-value=7.3e-11 Score=110.90 Aligned_cols=156 Identities=18% Similarity=0.225 Sum_probs=87.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+... +.++.|..-....+ ......+.+|||||.++ +..+...+.+....++
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHN-ISPTIGASFMTKTVPCGNELHKFLIWDTAGQER-FHSLAPMYYRGSAAAV 100 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTT-CCCCSSEEEEEEEEECSSSEEEEEEEEECCSGG-GGGGTHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC-cCCCcceeEEEEEEEeCCEEEEEEEEcCCCchh-hHhhhHHhhccCCEEE
Confidence 46899999999999999999998865432 23333332111111 12234688999999532 2222222222221111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..++.. +.... ....|+++|+||+|. ...
T Consensus 101 lV~----------------d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~piiiv~NK~Dl--~~~ 143 (192)
T 2fg5_A 101 IVY----------------DITKQDSFYTLKKWVKE------------------LKEHG-PENIVMAIAGNKCDL--SDI 143 (192)
T ss_dssp EEE----------------ETTCTHHHHHHHHHHHH------------------HHHHS-CTTCEEEEEEECGGG--GGG
T ss_pred EEE----------------eCCCHHHHHHHHHHHHH------------------HHHhC-CCCCcEEEEEECccc--ccc
Confidence 111 11112222222222221 21111 136899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+++.+++... +.+++++||+++.|++++.+..
T Consensus 144 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 144 REVPLKDAKEYAESI--GAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp CCSCHHHHHHHHHTT--TCEEEECBTTTTBSHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCEEEEEeCCCCcCHHHHHHHH
Confidence 333456666766654 6789999999999987775443
No 210
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.06 E-value=8.2e-11 Score=110.36 Aligned_cols=161 Identities=15% Similarity=0.187 Sum_probs=88.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+.+ |..-....+ ......+.+|||||.++ +..+...+.+....+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI-GVEFSTRTVMLGTAAVKAQIWDTAGLER-YRAITSAYYRGAVGA 101 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS-SEEEEEEEEEETTEEEEEEEEEESCCCT-TCTTHHHHHTTCCEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-ceeEEEEEEEECCEEEEEEEEeCCCchh-hhhhhHHHhccCCEE
Confidence 34689999999999999999999986543332221 211011111 12234688999999643 222222222222111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+...+..+..++.. +.... ....|+++|+||+|. ..
T Consensus 102 i~v~----------------D~~~~~s~~~~~~~l~~------------------i~~~~-~~~~piilv~nK~Dl--~~ 144 (193)
T 2oil_A 102 LLVF----------------DLTKHQTYAVVERWLKE------------------LYDHA-EATIVVMLVGNKSDL--SQ 144 (193)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHTTS-CTTCEEEEEEECGGG--GG
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhc-CCCCeEEEEEECCCc--cc
Confidence 1111 11111222222222111 11111 136899999999954 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
......+.+.+++... +.+++++||+++.|+.++.+...+..
T Consensus 145 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 145 AREVPTEEARMFAENN--GLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp GCCSCHHHHHHHHHHT--TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2233345555665554 67899999999999988866554443
No 211
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.05 E-value=9.8e-11 Score=110.10 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=84.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |..-....+...+ ..+.+|||+|.++ +..+...+.+....++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV-GVDFKIKTVELRGKKIRLQIWDTAGQER-FNSITSAYYRSAKGII 103 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCT-TEEEEEEEEEETTEEEEEEEEEECCSGG-GHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCcc-ceeEEEEEEEECCeEEEEEEEeCCCcHH-HHHHHHHHhcCCCEEE
Confidence 3579999999999999999999876543333221 2111112222222 4688999999543 3333333332222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+......+..|+ ..+..... ...|+++|+||+|. ...
T Consensus 104 lV~----------------D~~~~~s~~~~~~~~------------------~~i~~~~~-~~~piilV~NK~Dl--~~~ 146 (192)
T 2il1_A 104 LVY----------------DITKKETFDDLPKWM------------------KMIDKYAS-EDAELLLVGNKLDC--ETD 146 (192)
T ss_dssp EEE----------------ETTCHHHHHTHHHHH------------------HHHHHHSC-TTCEEEEEEECGGG--GGG
T ss_pred EEE----------------ECcCHHHHHHHHHHH------------------HHHHHhcC-CCCcEEEEEECccc--ccc
Confidence 111 111122222221111 11222221 36899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....+.+.+++... .+.+++++||++|.|++++.+....
T Consensus 147 ~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 147 REITRQQGEKFAQQI-TGMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp CCSCHHHHHHHHHTS-TTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHhc-CCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 233344555655542 2678999999999999887555443
No 212
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=110.12 Aligned_cols=163 Identities=14% Similarity=0.174 Sum_probs=84.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+++.-+.. ...+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFG-SRVVNVGGKTVKLQIWDTAGQER-FRSVTRSYYRGAAGA 101 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEE-EEEEEETTEEEEEEEECCTTHHH-HSCCCHHHHTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeE-EEEEEECCeeeEEEEEcCCCcHh-HHHHHHHHhccCCEE
Confidence 3468999999999999999999987654433332211110 11122222 4688999999643 222222222222111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ ++.+.+.+..+..++.. +..... ...|+++|+||+|. ..
T Consensus 102 i~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~piilv~nK~Dl--~~ 144 (200)
T 2o52_A 102 LLVY----------------DITSRETYNSLAAWLTD------------------ARTLAS-PNIVVILCGNKKDL--DP 144 (200)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHTC-TTCEEEEEEECGGG--GG
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECCCc--cc
Confidence 1111 11222222222222221 111111 37899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
.......+..+++... +.+++++||++|.|+.++.+...+...+
T Consensus 145 ~~~v~~~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 145 EREVTFLEASRFAQEN--ELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp GCCSCHHHHHHHHHHT--TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2233344555555554 6789999999999998886665554433
No 213
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.05 E-value=5.1e-11 Score=111.48 Aligned_cols=160 Identities=15% Similarity=0.178 Sum_probs=86.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh--hhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE--IINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~--~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.. |..-....+. .....+.+|||||.++ +..+...+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~----- 94 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV-GIDFKVKTVYRHDKRIKLQIWDTAGQER-YRTITTAYYRG----- 94 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC-CCEEEEEEEEETTEEEEEEEEECCSCCS-SCCSGGGGGTT-----
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce-eEEEEEEEEEECCeEEEEEEEeCCCcHH-HhhhHHHhccC-----
Confidence 3689999999999999999999986654433332 2211111111 1234688999999421 11111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
+|...++- ++.+.+.+..+..++. .+.... ....|+++|+||+|. ...
T Consensus 95 ---------~d~ii~v~--d~~~~~s~~~~~~~~~------------------~i~~~~-~~~~piilv~nK~Dl--~~~ 142 (189)
T 2gf9_A 95 ---------AMGFLLMY--DIANQESFAAVQDWAT------------------QIKTYS-WDNAQVILVGNKCDL--EDE 142 (189)
T ss_dssp ---------CSEEEEEE--ETTCHHHHHTHHHHHH------------------HHHHHS-CTTCEEEEEEECTTC--GGG
T ss_pred ---------CCEEEEEE--ECCCHHHHHHHHHHHH------------------HHHHhc-CCCCCEEEEEECccc--ccc
Confidence 11111111 1111122222222211 122111 137899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+.++++++.. +.+++++||++|.|++++.+...+..
T Consensus 143 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 143 RVVPAEDGRRLADDL--GFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 233344555555554 57899999999999988866554443
No 214
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.05 E-value=9.9e-11 Score=106.78 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=84.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+... +.++.|..-....+ ......+.+|||||.++ +..+...+.+....++.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPN-INPTIGASFMTKTVQYQNELHKFLIWDTAGLER-FRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTT-CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-GGGGTHHHHTTCSEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCceeEEEEEEEEEECCeEEEEEEEcCCCchh-hhcccHhhCcCCCEEEE
Confidence 5799999999999999999999865433 22333332111112 22234688999999643 22222222222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+......+..++.. +.... ....|+++|+||+|. ....
T Consensus 85 v~----------------d~~~~~s~~~~~~~~~~------------------l~~~~-~~~~~iilv~nK~Dl--~~~~ 127 (170)
T 1z0j_A 85 VY----------------DITKEETFSTLKNWVRE------------------LRQHG-PPSIVVAIAGNKCDL--TDVR 127 (170)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHS-CTTSEEEEEEECTTC--GGGC
T ss_pred EE----------------ECcCHHHHHHHHHHHHH------------------HHHhC-CCCCcEEEEEECCcc--cccc
Confidence 11 11222222222222211 22221 146899999999954 3322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
....+...+++... +.+++++||+++.|++++.+.
T Consensus 128 ~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 128 EVMERDAKDYADSI--HAIFVETSAKNAININELFIE 162 (170)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCEEEEEeCCCCcCHHHHHHH
Confidence 33344555555554 678999999999998777444
No 215
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.05 E-value=5.4e-11 Score=109.71 Aligned_cols=160 Identities=19% Similarity=0.251 Sum_probs=85.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+++ + .+.. ..+...+ ..+.+|||||.++ +..+...+.+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~--- 82 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI-G-VDFKIRTVEINGEKVKLQIWDTAGQER-FRTITSTYYRGT--- 82 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTB-S-EEEEEEEEEETTEEEEEEEEEETTGGG-CSSCCGGGGTTC---
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCc-e-eEEEEEEEEECCEEEEEEEEcCCCchh-hhhhHHHHhccC---
Confidence 3679999999999999999999876553333322 1 1111 1222222 4688999999422 111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
|...++- ++.+.+.+..+..++.. +... ....|+++|+||+|. ..
T Consensus 83 -----------d~~i~v~--d~~~~~s~~~~~~~~~~------------------~~~~--~~~~p~ilv~nK~Dl--~~ 127 (181)
T 3tw8_B 83 -----------HGVIVVY--DVTSAESFVNVKRWLHE------------------INQN--CDDVCRILVGNKNDD--PE 127 (181)
T ss_dssp -----------SEEEEEE--ETTCHHHHHHHHHHHHH------------------HHHH--CTTSEEEEEEECTTC--GG
T ss_pred -----------CEEEEEE--ECCCHHHHHHHHHHHHH------------------HHHh--CCCCCEEEEEECCCC--ch
Confidence 1111111 11222333322222221 1111 136899999999953 33
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
......+...++.... +.+++++||++|.|+.++.+...+.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 128 RKVVETEDAYKFAGQM--GIQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp GCCSCHHHHHHHHHHH--TCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2223334445555444 5789999999999999887666554433
No 216
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.05 E-value=2e-10 Score=114.46 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=61.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCcccccccccccc--cc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLS--HI 169 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~--~i 169 (561)
..++|+++|.+|+|||||+|+|++.. ..+++.+++|.+..... ..+..+.+|||||+.............+.. ..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 35799999999999999999999988 57788899987765432 234479999999997543211111111111 13
Q ss_pred ccCCEEEEEeccc
Q psy17315 170 SACDAIFHLCKEK 182 (561)
Q Consensus 170 ~~~D~il~VvD~~ 182 (561)
+.+|++++|+|.+
T Consensus 118 ~~~d~il~v~~~d 130 (270)
T 1h65_A 118 KTIDVLLYVDRLD 130 (270)
T ss_dssp CEECEEEEEEESS
T ss_pred CCCCEEEEEEeCC
Confidence 5789999998653
No 217
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.05 E-value=3e-11 Score=133.51 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=77.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC-Cc------------------------------ccCCCcccccCccccc--cC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS-AA------------------------------AENFPFCTIDPNENNK--VP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~-~~------------------------------~~~~~~~T~~~~~~~~--~~ 140 (561)
...++|+++|.+|+|||||+|+|++.. .. ....+|+|.+...... ..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 345789999999999999999996432 10 1114678877654322 23
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhcc-chhhHhhhHHHHHHHHHHhcch----hh
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISL-NTITIWRNLKLLETRIRDLRRS----VD 215 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~----v~ 215 (561)
..+.||||||..... ......++.+|++|+|+|++...... .. ......+.+ ..+..+..+ |+
T Consensus 255 ~~i~iiDTPGh~~f~-------~~~~~~~~~aD~alLVVDa~~g~~e~-gi~~~~qt~e~l----~~~~~lgip~iIvvi 322 (592)
T 3mca_A 255 KIYEIGDAPGHRDFI-------SGMIAGASSADFAVLVVDSSQNNFER-GFLENGQTREHA----YLLRALGISEIVVSV 322 (592)
T ss_dssp ----CCEEESSSEEE-------EECCC-------CCSEEEEEECCSST-TSCSCSSHHHHH----HHHHHSSCCCEEEEE
T ss_pred eEEEEEECCChHHHH-------HHHHHHHhhCCEEEEEEECCCCcccc-ccccchHHHHHH----HHHHHcCCCeEEEEE
Confidence 578999999986322 23355678899999999986321000 00 000111111 122233332 89
Q ss_pred ccccccCcCCCC-CccHHHHHHHh-hhcC----CCcEEEEEccCCCCHH--------------HHHHHHHhhc
Q psy17315 216 AKADSKKKMGPK-KTDEGEKKMLL-GRVG----TNLKVGIVGVPNVGKS--------------TFFNVLTKRA 268 (561)
Q Consensus 216 NK~D~~~~~~~~-~~~~~~l~~l~-~~~~----~~~~i~isg~~~~Gks--------------~l~~~l~~~~ 268 (561)
||+|+....... ......+..+. .... ..+.+.+||++|.|+. +|++.|....
T Consensus 323 NKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 323 NKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred eccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 999997421000 00112233333 2222 2257999999999997 7888887653
No 218
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.05 E-value=3.8e-10 Score=124.35 Aligned_cols=155 Identities=14% Similarity=0.048 Sum_probs=88.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccc--------------------cccCCeEEEEeCCCcccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN--------------------NKVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~--------------------~~~~~~i~l~DtpG~~~~ 154 (561)
+.++|+++|.+|+|||||+|+|++.........|.|.+.... ......+.||||||....
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 357899999999999999999987642111111333321100 001125999999998644
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCC----
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPK---- 227 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~---- 227 (561)
... ....++.+|++++|+|++.. .....++.+. .+.....+ ++||+|+.......
T Consensus 84 ~~~-------~~r~~~~aD~aILVvDa~~G-------v~~qT~e~l~----~l~~~~vPiIVViNKiDl~~~~~~~~~~~ 145 (594)
T 1g7s_A 84 TTL-------RKRGGALADLAILIVDINEG-------FKPQTQEALN----ILRMYRTPFVVAANKIDRIHGWRVHEGRP 145 (594)
T ss_dssp TTS-------BCSSSBSCSEEEEEEETTTC-------CCHHHHHHHH----HHHHTTCCEEEEEECGGGSTTCCCCTTCC
T ss_pred HHH-------HHHHHhhCCEEEEEEECCCC-------ccHhHHHHHH----HHHHcCCeEEEEecccccccccccccCCc
Confidence 321 12345789999999998631 0111222222 22223333 89999997532211
Q ss_pred ---------CccHHHH--------HHHhhh-------------cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 228 ---------KTDEGEK--------KMLLGR-------------VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 228 ---------~~~~~~l--------~~l~~~-------------~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
......+ ..+... ....+.+.+||++|.|+..|++++...
T Consensus 146 ~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 146 FMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 0000111 111111 112368999999999999999999864
No 219
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.05 E-value=5.4e-11 Score=125.71 Aligned_cols=157 Identities=14% Similarity=0.083 Sum_probs=94.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC---Cc------c--------cCCCcccccCcccc--ccCCeEEEEeCCCcccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS---AA------A--------ENFPFCTIDPNENN--KVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~---~~------~--------~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~ 154 (561)
...++|+++|.+|+|||||+|+|++.. .. . ...+|+|.+..... .....+.++||||....
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 345799999999999999999998741 10 0 01356666543321 12357999999997532
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCcc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTD 230 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~ 230 (561)
.......++.+|++++|+|++.... ....+.+ ..+.....+ ++||+|+......-...
T Consensus 89 -------~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~~~l----~~~~~~~ip~iivviNK~Dl~~~~~~~~~~ 150 (405)
T 2c78_A 89 -------IKNMITGAAQMDGAILVVSAADGPM-------PQTREHI----LLARQVGVPYIVVFMNKVDMVDDPELLDLV 150 (405)
T ss_dssp -------HHHHHHHHTTCSSEEEEEETTTCCC-------HHHHHHH----HHHHHTTCCCEEEEEECGGGCCCHHHHHHH
T ss_pred -------HHHHHHHHHHCCEEEEEEECCCCCc-------HHHHHHH----HHHHHcCCCEEEEEEECccccCcHHHHHHH
Confidence 2233455788999999999863210 1111111 122222222 79999997310000001
Q ss_pred HHHHHHHhhhcC----CCcEEEEEccCCCC------------------HHHHHHHHHhhc
Q psy17315 231 EGEKKMLLGRVG----TNLKVGIVGVPNVG------------------KSTFFNVLTKRA 268 (561)
Q Consensus 231 ~~~l~~l~~~~~----~~~~i~isg~~~~G------------------ks~l~~~l~~~~ 268 (561)
..++..+..... ..+.+.+||++|.| +.+|+++|.+..
T Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 151 EMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 112333333332 35789999999987 778888887754
No 220
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.05 E-value=4.7e-11 Score=110.82 Aligned_cols=160 Identities=15% Similarity=0.185 Sum_probs=66.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+. .+.. ..+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG--IDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGI 84 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHC--EEEEEEEEEETTEEEEEEEEEC----------CCTTTTTCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--ceeEEEEEEECCEEEEEEEEcCCCChh-hhhhHHHHHhcCCEE
Confidence 36799999999999999999998765444333221 1111 1222222 4688999999543 322222221111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
.++- ++.+.+.+..+..++.. +.... ....|+++|+||+|. ..
T Consensus 85 --------------i~v~--d~~~~~s~~~~~~~~~~------------------i~~~~-~~~~piilv~nK~Dl--~~ 127 (183)
T 2fu5_C 85 --------------MLVY--DITNEKSFDNIRNWIRN------------------IEEHA-SADVEKMILGNKCDV--ND 127 (183)
T ss_dssp --------------EEEE--ETTCHHHHHHHHHHHHH------------------HHHHS-CTTCEEEEEEEC--C--CS
T ss_pred --------------EEEE--ECcCHHHHHHHHHHHHH------------------HHHhc-CCCCCEEEEEECccC--Cc
Confidence 1111 11222333333333221 11111 136899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......+.+.+++... +.+++++||+++.|+.++.+.......
T Consensus 128 ~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 128 KRQVSKERGEKLALDY--GIKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CCCSCHHHHHHHHHHH--TCEEEECCC---CCHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222345555665554 678999999999999888766555443
No 221
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.05 E-value=1.4e-10 Score=108.41 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=89.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+++..+.....+ +.+... ..+.+.+ ..+.+|||+|.++ +. +.+....++
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~-t~~~~~--~~~~~~~~~~~l~i~Dt~G~~~-~~-----~~~~~~~~i 90 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESP-EGGRFK--KEIVVDGQSYLLLIRDEGGPPE-LQ-----FAAWVDAVV 90 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT-TCEEEE--EEEEETTEEEEEEEEECSSSCC-HH-----HHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-CcceEE--EEEEECCEEEEEEEEECCCChh-hh-----eecCCCEEE
Confidence 46899999999999999999998876543322 222111 1222222 3577899999543 22 111122221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..|+.. +.........|+++|+||+|......
T Consensus 91 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl~~~~~ 136 (184)
T 3ihw_A 91 FVF----------------SLEDEISFQTVYNYFLR------------------LCSFRNASEVPMVLVGTQDAISAANP 136 (184)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH------------------HHTTSCGGGSCEEEEEECTTCBTTBC
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECcccccccc
Confidence 111 22333444443333332 11111114689999999996421111
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+.+.+++... ...+++.+||++|.|++++.+...+..
T Consensus 137 ~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 137 RVIDDSRARKLSTDL-KRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp CCSCHHHHHHHHHHT-TTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc-CCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 223345555666554 137899999999999988866554443
No 222
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.04 E-value=7.1e-11 Score=116.95 Aligned_cols=150 Identities=14% Similarity=0.164 Sum_probs=84.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHH---------HHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEIN---------KIEKLV 313 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~---------~l~~~~ 313 (561)
++|.+.|.+|+|||+|+|.+++..+..+++ +|++ +... .+...+..+.+|||||+..... .+.+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~---pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNW---PGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEEC---TTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCC---CCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 579999999999999999999986443333 3443 3332 2334455789999999743111 111111
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
... ..+|++..|++.. . .+........+.. .++|+++|+||
T Consensus 79 ~~~--------------------------~~~d~vi~VvDas-----------~-~~~~~~l~~~l~~-~~~pvilv~NK 119 (256)
T 3iby_A 79 VID--------------------------LEYDCIINVIDAC-----------H-LERHLYLTSQLFE-LGKPVVVALNM 119 (256)
T ss_dssp HHH--------------------------SCCSEEEEEEEGG-----------G-HHHHHHHHHHHTT-SCSCEEEEEEC
T ss_pred Hhh--------------------------CCCCEEEEEeeCC-----------C-chhHHHHHHHHHH-cCCCEEEEEEC
Confidence 100 0001111111100 0 1112222222222 47999999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
+|...........+.+.+.+ +.+++++||++|.|+++|.+...
T Consensus 120 ~Dl~~~~~~~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~~~i~ 162 (256)
T 3iby_A 120 MDIAEHRGISIDTEKLESLL-----GCSVIPIQAHKNIGIPALQQSLL 162 (256)
T ss_dssp HHHHHHTTCEECHHHHHHHH-----CSCEEECBGGGTBSHHHHHHHHH
T ss_pred hhcCCcCCcHHHHHHHHHHc-----CCCEEEEECCCCCCHHHHHHHHH
Confidence 96532221223344454433 67899999999999988865543
No 223
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.04 E-value=9.4e-11 Score=109.97 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=85.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+++ |..-....+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVEFGARMVNIDGKQIKLQIWDTAGQES-FRSITRSYYRGAAGAL 98 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----C-CSSEEEEEEEETTEEEEEEEECCTTGGG-TSCCCHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-cceeEEEEEEECCEEEEEEEEECCCchh-hhhhHHHHhccCCEEE
Confidence 3579999999999999999999886544333322 2110111222222 4688999999532 2211112211111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
. +- ++.+.+.+..+..++.. +.... ....|+++|+||+|. ...
T Consensus 99 ~--------------v~--d~~~~~s~~~~~~~l~~------------------i~~~~-~~~~piilv~nK~Dl--~~~ 141 (191)
T 2a5j_A 99 L--------------VY--DITRRETFNHLTSWLED------------------ARQHS-SSNMVIMLIGNKSDL--ESR 141 (191)
T ss_dssp E--------------EE--ETTCHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECTTC--GGG
T ss_pred E--------------EE--ECCCHHHHHHHHHHHHH------------------HHHhc-CCCCCEEEEEECccc--CCc
Confidence 1 11 11222222222222211 11111 137899999999954 322
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....+.+.+++... +.+++++||+++.|++++.+...+...
T Consensus 142 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 142 RDVKREEGEAFAREH--GLIFMETSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 233344555555554 678999999999999888665544433
No 224
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.04 E-value=1.1e-10 Score=107.80 Aligned_cols=155 Identities=13% Similarity=0.155 Sum_probs=85.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+.+..+. ....+.. ....+.+|||||.++ +..+...+.+....++.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF-FSQTLAVNDATVKFEIWDTAGQER-YHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSE-EEEEEEETTEEEEEEEEECCCSGG-GGGGTHHHHTTCSEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEE-EEEEEEECCEEEEEEEEeCCCChh-hhhhhHHHhccCCEEEE
Confidence 5799999999999999999998865543333221111 1111111 234688999999532 22222222222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
+- ++.+...+..+..++.. +..... ...|+++|+||+|. ....
T Consensus 91 --------------v~--d~~~~~s~~~~~~~~~~------------------~~~~~~-~~~p~i~v~nK~Dl--~~~~ 133 (181)
T 2efe_B 91 --------------VF--DVTNQASFERAKKWVQE------------------LQAQGN-PNMVMALAGNKSDL--LDAR 133 (181)
T ss_dssp --------------EE--ETTCHHHHHHHHHHHHH------------------HHHHSC-TTCEEEEEEECTTC--TTTC
T ss_pred --------------EE--ECCCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECCcc--cccc
Confidence 11 11122222222222221 111111 36899999999954 3322
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+.+.+++... +.+++++||++|.|+.++.+..
T Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 134 KVTAEDAQTYAQEN--GLFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp CSCHHHHHHHHHHT--TCEEEECCSSSCTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHH
Confidence 33445666666554 6789999999999987775443
No 225
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=109.22 Aligned_cols=157 Identities=10% Similarity=0.087 Sum_probs=85.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+|.+.|.+|+|||+|++.+.+..+.... .++.+.. .....+......+.+|||+|.++ +..+.. +.+....++.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~-~~~~~~~~il 97 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFISEY-DPNLEDTYSSEETVDHQPVHLRVMDTADLDT-PRNCER-YLNWAHAFLV 97 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSCC-CTTCCEEEEEEEEETTEEEEEEEEECCC----CCCTHH-HHTTCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCCccc-CCCccceeeEEEEECCEEEEEEEEECCCCCc-chhHHH-HHhhCCEEEE
Confidence 468999999999999999999988654322 2222211 00011112224678999999643 222221 2222221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh--hccCCceEEEecCChhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN--LLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~--~l~~kP~iiv~NK~D~d~~~ 400 (561)
.+ .+.+.+.+..+..|+.. +.... .....|+++|+||+|. ..
T Consensus 98 v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~~piilv~nK~Dl--~~ 141 (187)
T 3c5c_A 98 VY----------------SVDSRQSFDSSSSYLEL------------------LALHAKETQRSIPALLLGNKLDM--AQ 141 (187)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHHHHHCCCCCEEEEEECGGG--GG
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHHhhccCCCCCEEEEEECcch--hh
Confidence 11 12233444434333322 11111 0147899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeech-hhhhhhCCCCHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSG-VFEHQLVDMPDDER 441 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA-~~~~gl~~L~~~~~ 441 (561)
......++..+++... +.+++.+|| +++.|+.++.+...
T Consensus 142 ~~~v~~~~~~~~~~~~--~~~~~e~Sa~~~g~gv~~lf~~l~ 181 (187)
T 3c5c_A 142 YRQVTKAEGVALAGRF--GCLFFEVSACLDFEHVQHVFHEAV 181 (187)
T ss_dssp GCSSCHHHHHHHHHHH--TCEEEECCSSSCSHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHc--CCcEEEEeecCccccHHHHHHHHH
Confidence 2233345555665554 678999999 89999888755443
No 226
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.04 E-value=1.9e-10 Score=119.97 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=87.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCcccc--ccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN--KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
+|+++|.+|+|||||+|+|+ ..|.|.+..... .....+.++||||..... ......++.+|++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~-------~~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL-------KSLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH-------HHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH-------HHHHHHHHHCCEE
Confidence 89999999999999999998 345555543321 234579999999985322 2334556889999
Q ss_pred EEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhc-cccccCcCCCCCccHHHHHHHhhhc--CCCcEEE
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDA-KADSKKKMGPKKTDEGEKKMLLGRV--GTNLKVG 248 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N-K~D~~~~~~~~~~~~~~l~~l~~~~--~~~~~i~ 248 (561)
++|+| ... ......+.+ ..+..+..+ +.| |+|+ ..... .....++..+.... ...+.+.
T Consensus 88 ilVvd-~~g-------~~~qt~e~~----~~~~~~~i~~~ivvvNNK~Dl-~~~~~-~~~~~~i~~~l~~~~~~~~~ii~ 153 (370)
T 2elf_A 88 VLCIP-PQG-------LDAHTGECI----IALDLLGFKHGIIALTRSDST-HMHAI-DELKAKLKVITSGTVLQDWECIS 153 (370)
T ss_dssp EEEEC-TTC-------CCHHHHHHH----HHHHHTTCCEEEEEECCGGGS-CHHHH-HHHHHHHHHHTTTSTTTTCEEEE
T ss_pred EEEEc-CCC-------CcHHHHHHH----HHHHHcCCCeEEEEEEeccCC-CHHHH-HHHHHHHHHHHHhcCCCceEEEe
Confidence 99998 421 000111111 112222222 778 9998 32110 00112333333332 2357789
Q ss_pred --EEccC---CCCHHHHHHHHHhhc
Q psy17315 249 --IVGVP---NVGKSTFFNVLTKRA 268 (561)
Q Consensus 249 --isg~~---~~Gks~l~~~l~~~~ 268 (561)
+||++ |.|++.|+++|.+..
T Consensus 154 ~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 154 LNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp CCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred cccccccCcCCCCHHHHHHHHHhhc
Confidence 99999 999999999988763
No 227
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.03 E-value=5.4e-11 Score=123.38 Aligned_cols=156 Identities=14% Similarity=0.114 Sum_probs=86.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-C-----cccCCCc----------------------ccccC-----------c--
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-A-----AAENFPF----------------------CTIDP-----------N-- 134 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~-----~~~~~~~----------------------~T~~~-----------~-- 134 (561)
.++|+++|.||||||||+|+|+|.. . .++..|+ +|++. .
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999977 3 3444566 33330 0
Q ss_pred --ccc-----------ccCCeEEEEeCCCcccCCccc--c----cccccccccccc-CCEEEEEecccccchhhhccchh
Q psy17315 135 --ENN-----------KVPAFLNVVDIAGLVKGAAEG--Q----GLGNAFLSHISA-CDAIFHLCKEKLRNIFFISLNTI 194 (561)
Q Consensus 135 --~~~-----------~~~~~i~l~DtpG~~~~~~~~--~----~~~~~~l~~i~~-~D~il~VvD~~~~~~~~~~~~~~ 194 (561)
.+. .....+.||||||+......+ . .+......+++. +++|++|+|+.. +
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~--------- 180 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-D--------- 180 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-C---------
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-c---------
Confidence 000 013469999999997532110 1 111222333434 456666776531 0
Q ss_pred hHhhhHHH--HHHHHHHhcch---hhccccccCcCCCCCccHHHHHHHhhh--cCCCcEEEEEccCCCCHHHHHHHHHh
Q psy17315 195 TIWRNLKL--LETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKMLLGR--VGTNLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 195 ~~~~~~~~--l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~l~~~--~~~~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
+...+. +...+.....+ |+||+|+.+.... ....+...... .+....+.+|+.+|.|+.+|++++.+
T Consensus 181 --~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~---~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 181 --LANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTD---ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp --GGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCC---CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred --cchhHHHHHHHHhCcCCCceEEEeccccccCcchh---HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 111111 11222222222 9999999854221 11111110000 11224577999999999999999876
No 228
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.03 E-value=9e-11 Score=106.22 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=83.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+. .++. ....+.. ....+.+|||||..+ +..+...+......++.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPT-IEDS-YRKQVVIDGETCLLDILDTAGQEE-YSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTT-CCEE-EEEEEEETTEEEEEEEEECCCCSS-CCHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCc-cceE-EEEEEEECCEEEEEEEEECCCchh-hhHHHHHhhccCCEEEE
Confidence 46999999999999999999987544322221 1111 0111112 223578999999532 22222222222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ .+.+.+.+..+..++.. +.........|+++|+||+|. .. .
T Consensus 81 v~----------------d~~~~~~~~~~~~~~~~------------------i~~~~~~~~~p~iiv~nK~Dl--~~-~ 123 (166)
T 2ce2_X 81 VF----------------AINNTKSFEDIHQYREQ------------------IKRVKDSDDVPMVLVGNKSDL--AA-R 123 (166)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHHTCSCCCEEEEEECTTC--SC-C
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HHHhcCCCCCcEEEEEEchhh--hh-c
Confidence 11 11222332222222211 222221237899999999954 32 2
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+.+.++.+.. +.+++++||+++.|+.++.+...
T Consensus 124 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 124 TVESRQAQDLARSY--GIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp CSCHHHHHHHHHHH--TCCEEEECTTTCTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHH
Confidence 23344555555544 57899999999999887755443
No 229
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.03 E-value=2.1e-10 Score=107.62 Aligned_cols=55 Identities=11% Similarity=0.020 Sum_probs=40.4
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
..|+++|+||+| ........+++.+++... +.+++++||+++.|+.++.+...+.
T Consensus 147 ~~piilv~NK~D---~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 147 NYIIILVANKID---KNKFQVDILEVQKYAQDN--NLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp CCEEEEEEECTT---CC-CCSCHHHHHHHHHHT--TCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEEECCC---cccccCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHH
Confidence 589999999996 222334456677777665 6789999999999998876655443
No 230
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.03 E-value=1.4e-10 Score=108.45 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=83.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+..+. ....+... ...+.+|||||.++....+...+.+....++
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF-RERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCE-EEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEE-EEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 36899999999999999999998765443332221111 01112222 2468899999965422133333332222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+...+..+..++.. +.........|+++|+||+|. ...
T Consensus 99 lv~----------------D~~~~~s~~~~~~~~~~------------------i~~~~~~~~~piilv~nK~Dl--~~~ 142 (189)
T 1z06_A 99 FVY----------------DMTNMASFHSLPAWIEE------------------CKQHLLANDIPRILVGNKCDL--RSA 142 (189)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHCCCSCCCEEEEEECTTC--GGG
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcCCCCCCEEEEEECccc--ccc
Confidence 111 11222222222222221 222211247899999999954 322
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhh---hhhCCC
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFE---HQLVDM 436 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~---~gl~~L 436 (561)
.....+...++.... +.+++++||+++ .|+.++
T Consensus 143 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 143 IQVPTDLAQKFADTH--SMPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp CCSCHHHHHHHHHHT--TCCEEECCSSSGGGGSCHHHH
T ss_pred ceeCHHHHHHHHHHc--CCEEEEEeCCcCCcccCHHHH
Confidence 222344555555544 578999999999 554443
No 231
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.02 E-value=1.7e-10 Score=106.21 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=87.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc-ccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP-VRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp-~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |. +. ...+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI-GV-EFLNKDLEVDGHFVTMQIWDTAGQER-FRSLRTPFYRGSDCC 83 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CC-SE-EEEEEEEEETTEEEEEEEEECCCCGG-GHHHHGGGGTTCSEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-ee-eEEEEEEEECCEEEEEEEEeCCCchh-hhhhHHHHHhcCCEE
Confidence 3579999999999999999999886554333322 21 11 11222222 3688999999543 333333333222221
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ .+.+...+..+..++.. .............|+++|+||+|. ..
T Consensus 84 i~v~----------------d~~~~~s~~~~~~~~~~---------------~~~~~~~~~~~~~p~i~v~nK~Dl--~~ 130 (177)
T 1wms_A 84 LLTF----------------SVDDSQSFQNLSNWKKE---------------FIYYADVKEPESFPFVILGNKIDI--SE 130 (177)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHHH---------------HHHHHTCSCTTTSCEEEEEECTTC--SS
T ss_pred EEEE----------------ECcCHHHHHHHHHHHHH---------------HHHHccccccCCCcEEEEEECCcc--cc
Confidence 1111 11222222222222221 111111111146899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
.....+.+.+++... .+.+++++||++|.|+.++.+...+
T Consensus 131 -~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 131 -RQVSTEEAQAWCRDN-GDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp -CSSCHHHHHHHHHHT-TCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred -cccCHHHHHHHHHhc-CCceEEEEeCCCCCCHHHHHHHHHH
Confidence 233455666665532 2678999999999999887555443
No 232
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.6e-10 Score=105.85 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=51.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc---ccCCCcccccCccccccCCeEEEEeCCCcccCCcccccccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA---AENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISA 171 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~---~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~ 171 (561)
..++|+++|.+|||||||+|+|++.... ++..|++|.+. ....+.+|||||...... .+...+...+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~ 118 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRY---KLSDYLKTRAKF 118 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-----CCTTCSEEEETTCCBSSC---CHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-----cCCeEEEEECCCCchHHH---HHHHHHHhhccc
Confidence 4579999999999999999999987622 23344444432 244688999999865432 112222333456
Q ss_pred CCEEEEEeccc
Q psy17315 172 CDAIFHLCKEK 182 (561)
Q Consensus 172 ~D~il~VvD~~ 182 (561)
+|++++|+|++
T Consensus 119 ~~~~i~v~d~~ 129 (193)
T 2ged_A 119 VKGLIFMVDST 129 (193)
T ss_dssp EEEEEEEEETT
T ss_pred CCEEEEEEECC
Confidence 89999999875
No 233
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.02 E-value=1.3e-10 Score=110.21 Aligned_cols=161 Identities=16% Similarity=0.237 Sum_probs=87.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+..+. ....+...+ ..+.+|||||.++ +..+...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~---- 81 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF-KIKTVELDGKTVKLQIWDTAGQER-FRTITSSYYRGS---- 81 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCE-EEEEEEETTEEEEEEEECCTTTTT-TTCCCGGGGTTC----
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEEECCEEEEEEEEeCCChHH-HHHHHHHhccCC----
Confidence 36899999999999999999999876544333321111 111222222 3688999999432 111111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
|...++- ++.+.+.+..+..++.. +..... ...|+++|+||+|. ...
T Consensus 82 ----------d~vilv~--d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piilv~nK~Dl--~~~ 128 (206)
T 2bcg_Y 82 ----------HGIIIVY--DVTDQESFNGVKMWLQE------------------IDRYAT-STVLKLLVGNKCDL--KDK 128 (206)
T ss_dssp ----------SEEEEEE--ETTCHHHHHHHHHHHHH------------------HHHHSC-TTCEEEEEEECTTC--TTT
T ss_pred ----------CEEEEEE--ECcCHHHHHHHHHHHHH------------------HHHhcC-CCCCEEEEEECCCC--ccc
Confidence 1111111 11222232222222221 221111 36899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.....+...+++... +.+++++||++|.|++++.+.....+.
T Consensus 129 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 129 RVVEYDVAKEFADAN--KMPFLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp CCSCHHHHHHHHHHT--TCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 233344555555544 678999999999999888666555443
No 234
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.02 E-value=9e-11 Score=121.83 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=85.7
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcC------C-CcccCCCcccc----------------------------------
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKS------S-AAAENFPFCTI---------------------------------- 131 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~------~-~~~~~~~~~T~---------------------------------- 131 (561)
......|+++|.||||||||+|+|+.. + ..+..-|+.+.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 345678999999999999999999632 1 11111111111
Q ss_pred ------cCccc-cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHH
Q psy17315 132 ------DPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLE 204 (561)
Q Consensus 132 ------~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~ 204 (561)
+.... ...+..+.|+||||+.... ...+..+|++++|+|+...+.. .. +.
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~----------~~~~~~aD~vl~V~d~~~~~~~-------~~------l~ 212 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSE----------VAVANMVDTFVLLTLARTGDQL-------QG------IK 212 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHH----------HHHHTTCSEEEEEEESSTTCTT-------TT------CC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHH----------HHHHHhCCEEEEEECCCCCccH-------HH------HH
Confidence 00000 1124579999999974321 1224789999999987532210 00 00
Q ss_pred HHHHHh-cchhhccccccCcCCCCCccHHHHHHHhhhcC------CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 205 TRIRDL-RRSVDAKADSKKKMGPKKTDEGEKKMLLGRVG------TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 205 ~~l~~~-~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~------~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
..+.+. ...|+||+|+........ ....+...+.... ..+.+.+|+++|.|++.|+++|.+..
T Consensus 213 ~~~~~~p~ivVlNK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 213 KGVLELADIVVVNKADGEHHKEARL-AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp TTSGGGCSEEEEECCCGGGHHHHHH-HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HhHhhcCCEEEEECCCCcChhHHHH-HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 011111 111899999873211100 1112222222221 34689999999999999999998764
No 235
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.02 E-value=8.2e-11 Score=107.32 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=81.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+.+.-+. ....+... ...+.+|||||.++ +..+...+.+....+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~~-- 79 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQIWDTAGQER-FRTITTAYYRGAMGI-- 79 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCE-EEEEEESSSCEEEEEEECCTTGGG-TSCCCHHHHTTEEEE--
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeE-EEEEEEECCEEEEEEEEeCCCChh-hhhhHHHHhccCCEE--
Confidence 5799999999999999999998865443333221111 01112222 23688999999432 211111111111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++- ++.+...+..+..++. .+..... ...|+++|+||+|. .. .
T Consensus 80 ------------i~v~--d~~~~~s~~~~~~~~~------------------~i~~~~~-~~~piilv~nK~Dl--~~-~ 123 (170)
T 1g16_A 80 ------------ILVY--DITDERTFTNIKQWFK------------------TVNEHAN-DEAQLLLVGNKSDM--ET-R 123 (170)
T ss_dssp ------------EEEE--ETTCHHHHHTHHHHHH------------------HHHHHSC-TTCEEEEEEECTTC--TT-C
T ss_pred ------------EEEE--ECCCHHHHHHHHHHHH------------------HHHHhcC-CCCcEEEEEECccC--Cc-C
Confidence 1111 1111122221111111 1221111 36899999999964 21 2
Q ss_pred cchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+...++++.. +.+++++||++|.|+.++.+...+.
T Consensus 124 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 124 VVTADQGEALAKEL--GIPFIESSAKNDDNVNEIFFTLAKL 162 (170)
T ss_dssp CSCHHHHHHHHHHH--TCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33344555555544 5789999999999998876554443
No 236
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.01 E-value=7.1e-11 Score=111.00 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=84.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+..+......+......+.+|||||.++ +..+...+.+....++
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~i-- 99 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEE-YDRLRPLSYADSDVVL-- 99 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-GTTTGGGGCTTCSEEE--
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHH-HHHHhHhhccCCcEEE--
Confidence 4689999999999999999999986543332221111111111111223568999999432 2222222211111111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
++- ++.+.+.+..+. .|+ ..+... ....|+++|+||+|.......
T Consensus 100 ------------~v~--d~~~~~s~~~~~~~~~------------------~~~~~~--~~~~p~ilv~nK~Dl~~~~~~ 145 (194)
T 3reg_A 100 ------------LCF--AVNNRTSFDNISTKWE------------------PEIKHY--IDTAKTVLVGLKVDLRKDGSD 145 (194)
T ss_dssp ------------EEE--ETTCHHHHHHHHHTHH------------------HHHHHH--CTTSEEEEEEECGGGCCTTTT
T ss_pred ------------EEE--ECCCHHHHHHHHHHHH------------------HHHHHh--CCCCCEEEEEEChhhccCCCC
Confidence 110 122223322221 111 112211 146899999999954211112
Q ss_pred cchHHHHHHHHHhcCCCCe-EEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDANDPGAT-IIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~-vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....+.+.+++... +.+ ++++||++|.|+.++.+...+
T Consensus 146 ~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~ 184 (194)
T 3reg_A 146 DVTKQEGDDLCQKL--GCVAYIEASSVAKIGLNEVFEKSVD 184 (194)
T ss_dssp CCCHHHHHHHHHHH--TCSCEEECBTTTTBSHHHHHHHHHH
T ss_pred cccHHHHHHHHHhc--CCCEEEEeecCCCCCHHHHHHHHHH
Confidence 23345555555554 445 999999999998887555443
No 237
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=1.9e-10 Score=108.13 Aligned_cols=157 Identities=11% Similarity=0.165 Sum_probs=85.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+....+......+......+.+|||||.++ +..+...+.+....++.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQ-FPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGS-CHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHH-hHHHHHHhhccCCEEEE
Confidence 34689999999999999999999986654443332222211111112224688999999543 33333333322222211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecCChhhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK~D~d~~~~ 401 (561)
.+ .+.+.+.+..+..+ ...+..... ....|+++|+||+|. ..
T Consensus 86 v~----------------d~~~~~s~~~~~~~------------------~~~i~~~~~~~~~~piilv~nK~Dl--~~- 128 (199)
T 2gf0_A 86 VF----------------SVTSKQSLEELGPI------------------YKLIVQIKGSVEDIPVMLVGNKCDE--TQ- 128 (199)
T ss_dssp EE----------------ETTCHHHHHTTHHH------------------HHHHHHHHSCGGGSCEEEEEECTTC--SS-
T ss_pred EE----------------ECcCHHHHHHHHHH------------------HHHHHHHhcCCCCCCEEEEEECccC--Cc-
Confidence 11 11111221111111 111221110 136899999999954 32
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.....+...+++... +.+++++||++|.|+.++.+.
T Consensus 129 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 129 REVDTREAQAVAQEW--KCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp CSSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHH
T ss_pred cccCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHH
Confidence 222334444444443 578999999999998777444
No 238
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.01 E-value=1.5e-10 Score=105.44 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=82.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+. .|..-....+.. ....+.+|||||.++ +..+...+.+....++.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPT-IGAAFLTQRVTINEHTVKFEIWDTAGQER-FASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-SSEEEEEEEEEETTEEEEEEEEEECCSGG-GGGGHHHHHTTCSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-cceeEEEEEEEECCEEEEEEEEECCCChh-hhhhhhhhhccCcEEEE
Confidence 47999999999999999999988654333322 222111111222 224688999999533 33333333222221111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh-
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK- 401 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~- 401 (561)
.+ ++.+...+..+..++.. +.... ....|+++|+||+|. ...
T Consensus 82 v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~piilv~nK~Dl--~~~~ 124 (170)
T 1ek0_A 82 VY----------------DVTKPQSFIKARHWVKE------------------LHEQA-SKDIIIALVGNKIDX--LQEG 124 (170)
T ss_dssp EE----------------ETTCHHHHHHHHHHHHH------------------HHHHS-CTTCEEEEEEECGGG--GGSS
T ss_pred EE----------------ecCChHHHHHHHHHHHH------------------HHHhc-CCCCcEEEEEECCCc--cccc
Confidence 11 11222222222222221 11111 136899999999954 322
Q ss_pred --ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 402 --KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 402 --~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.....+...+++... +.+++++||+++.|+.++.+
T Consensus 125 ~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 125 GERKVAREEGEKLAEEK--GLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp CCCCSCHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHH
T ss_pred cccCCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHH
Confidence 122233444444443 57899999999999877643
No 239
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.01 E-value=3.4e-11 Score=128.95 Aligned_cols=159 Identities=19% Similarity=0.278 Sum_probs=82.7
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
....+|.+.|.+|+|||+|+|.+++..+ ..++..+||+ |... .+...+..+.+|||||+++..+.++....+....
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~--a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDR--AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHB--SCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------C
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCc--ccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhh
Confidence 3456899999999999999999999743 2334445554 3322 2333456789999999865333333322111111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
. +..+|+++.|++.. ..+...+..++... ..+|+++|+||+|. .
T Consensus 300 ~---------------------~~~aD~vl~VvD~s----------~~~~~~~~~i~~~l---~~~piivV~NK~Dl--~ 343 (462)
T 3geh_A 300 A---------------------ANTADLVLLTIDAA----------TGWTTGDQEIYEQV---KHRPLILVMNKIDL--V 343 (462)
T ss_dssp C---------------------CCSCSEEEEEEETT----------TCSCHHHHHHHHHH---TTSCEEEEEECTTS--S
T ss_pred h---------------------hhcCCEEEEEeccC----------CCCCHHHHHHHHhc---cCCcEEEEEECCCC--C
Confidence 1 11223333332210 12344454544433 35899999999954 3
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.... ...+++ .....+++++||++|.|+++|.+...+.+
T Consensus 344 ~~~~--~~~~~~----~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 344 EKQL--ITSLEY----PENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp CGGG--STTCCC----CTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cchh--hHHHHH----hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 2111 111111 11246799999999999999876665543
No 240
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.01 E-value=1.9e-10 Score=106.16 Aligned_cols=159 Identities=7% Similarity=0.086 Sum_probs=87.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+||++|++.+++..+.. +.++.+.. -...+... ...+.+|||+|.++ . .+.+....++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-~-----~~~~~~d~~i 77 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-A-----KFSGWADAVI 77 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-H-----HHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCccee-EEEEEEECCEEEEEEEEECCCCch-h-----HHHHhCCEEE
Confidence 3579999999999999999999987653 23322321 11112222 24578899999643 1 1222222221
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..|+.. ...+.... ....|+++|+||+|......
T Consensus 78 lv~----------------D~~~~~s~~~~~~~~~~---------------i~~~~~~~-~~~~piilv~nK~Dl~~~~~ 125 (178)
T 2iwr_A 78 FVF----------------SLEDENSFQAVSRLHGQ---------------LSSLRGEG-RGGLALALVGTQDRISASSP 125 (178)
T ss_dssp EEE----------------ETTCHHHHHHHHHHHHH---------------HHHHHCSS-SCCCEEEEEEECTTCBTTBC
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH---------------HHHHHhcC-CCCCCEEEEEECcccccccc
Confidence 111 12223333333332211 11111111 13689999999996421111
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+++.+++... .+.+++++||++|.|++++.+......
T Consensus 126 ~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 126 RVVGDARARALXADM-KRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp CCSCHHHHHHHHHHH-SSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHhh-cCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 223345555555443 257899999999999988866655443
No 241
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.00 E-value=5.3e-10 Score=103.07 Aligned_cols=166 Identities=15% Similarity=0.138 Sum_probs=83.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhh---hHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEII---NEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |. +.. ..+... ...+.+|||||.++ +..+...+.+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI-GA-DFLTKEVTVDGDKVATMQVWDTAGQER-FQSLGVAFYRGADC 84 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---C-CC-SCEEEEECCSSSCCEEEEEECCC-----------CCSTTCCE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc-ce-EEEEEEEEEcCCcEEEEEEEECCCChH-hhhhhHHHhhcCCE
Confidence 4679999999999999999999886554333222 21 111 122222 23678999999533 33333222222211
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
++..+ ++.+...+..+..++.. .............|+++|+||+|....
T Consensus 85 ~i~v~----------------d~~~~~s~~~~~~~~~~---------------~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 85 CVLVY----------------DVTNASSFENIKSWRDE---------------FLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp EEEEE----------------ETTCHHHHHTHHHHHHH---------------HHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred EEEEE----------------ECCChHHHHHHHHHHHH---------------HHHHhcccCcCCCcEEEEEECCccccc
Confidence 11111 11222222222222221 000000001146899999999964211
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......+.+.++.... .+.+++++||++|.|++++.+.....++
T Consensus 134 -~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 134 -KKIVSEKSAQELAKSL-GDIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp -GCCSCHHHHHHHHHHT-TSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -cccCCHHHHHHHHHhc-CCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1122345555555422 2678999999999999888666554443
No 242
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.00 E-value=6.8e-11 Score=111.19 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=39.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++.+.+..+....+.++.|.. ...+......+.+|||+|.+
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEETTEEEEEEEECCSG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEEeCCEEEEEEECCCCH
Confidence 456899999999999999999999876552333333421 11233344578999999964
No 243
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=1.1e-10 Score=109.13 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=86.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch--hhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--EIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~--~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+||++|++.+.+..+.....+. .|..-....+ ......+.+|||||.++ +..+...+.+....++
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAAT-IGVDFKVKTISVDGNKAKLAIWDTAGQER-FRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-CSEEEEEEEEEETTEEEEEEEEEECSSGG-GCCSHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCc-cceEEEEEEEEECCeEEEEEEEeCCCchh-hhhhhHHHhccCCEEE
Confidence 357999999999999999999998665433332 2221011112 22234688999999532 2222222222221111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+.+.+..+..++.. +........+|+++|+||+|. ..
T Consensus 93 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~p~ilv~nK~Dl--~~- 135 (195)
T 1x3s_A 93 LVY----------------DVTRRDTFVKLDNWLNE------------------LETYCTRNDIVNMLVGNKIDK--EN- 135 (195)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HTTCCSCSCCEEEEEEECTTS--SS-
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHhcCcCCCcEEEEEECCcC--cc-
Confidence 111 11112222222222211 111111246899999999964 22
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.....+...+++... +.+++++||+++.|+.++.+...+.
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (195)
T 1x3s_A 136 REVDRNEGLKFARKH--SMLFIEASAKTCDGVQCAFEELVEK 175 (195)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHH
Confidence 222344455555554 6789999999999998875554443
No 244
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.99 E-value=5.7e-10 Score=103.84 Aligned_cols=164 Identities=20% Similarity=0.208 Sum_probs=86.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH----------HHHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI----------EKEINKIEKLVQ 314 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi----------~~~~~~l~~~~~ 314 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+ |++.....+.. ..+.+|||||+ ++.+..+...+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~---~~t~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP---GVTRKIIEIEW--KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST---TCTTSCEEEEE--TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC---CccceeEEEec--CCEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999865544333 33211111222 16889999994 333444433333
Q ss_pred hC-CccccchhhhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEec
Q psy17315 315 RG-DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVN 392 (561)
Q Consensus 315 ~~-~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~N 392 (561)
+. ...+... ..+ .+......+ ..|... .....+.+.+..... ...|+++|+|
T Consensus 77 ~~~~~~~~~v-----------~~v-----~d~~s~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~piilv~n 130 (190)
T 2cxx_A 77 EDNAKNIDVA-----------VLV-----VDGKAAPEIIKRWEKR---------GEIPIDVEFYQFLRE-LDIPTIVAVN 130 (190)
T ss_dssp HHHGGGCCEE-----------EEE-----EETTHHHHHHHHHHHT---------TCCCHHHHHHHHHHH-TTCCEEEEEE
T ss_pred HhhhccCCEE-----------EEE-----EcchhhhhHHHhhhcc---------CccHHHHHHHHHHHh-cCCceEEEee
Confidence 22 1111110 011 111222222 223222 112233333333322 4799999999
Q ss_pred CChhhhhhhccchHHHHHHHHHhcC-CC----CeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 393 LSAKDYIKKKNKWLPKIKEWVDAND-PG----ATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 393 K~D~d~~~~~~~~~~~l~~~~~~~~-~~----~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
|+|. .... .+.++++.+... +. .+++++||++|.|++++.+...+.+
T Consensus 131 K~Dl--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 131 KLDK--IKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp CGGG--CSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hHhc--cCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 9954 3211 223333333221 11 2579999999999988866554443
No 245
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.99 E-value=2e-10 Score=109.32 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=84.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+||++|++.+.+..+.....+.++-+. ....+.+.+ ..+.+|||||.++ +..+...+.+....+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQLWDTAGQER-FRTITTAYYRGAMGI 96 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCE-EEEEEEETTEEEEEEEECCTTGGG-GTCCCHHHHTTCSEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEEECCEEEEEEEEeCCCcHH-HHHHHHHHhccCCEE
Confidence 346899999999999999999998765444333321111 111222222 4688999999532 221111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+ ++- ++.+...+..+..++. .+..... ...|+++|+||+|. ..
T Consensus 97 i--------------~v~--d~~~~~s~~~~~~~~~------------------~i~~~~~-~~~piilv~nK~Dl--~~ 139 (213)
T 3cph_A 97 I--------------LVY--DVTDERTFTNIKQWFK------------------TVNEHAN-DEAQLLLVGNKSDM--ET 139 (213)
T ss_dssp E--------------EEE--ETTCHHHHHTHHHHHH------------------HHHHHTT-TCSEEEEEEECTTC--SS
T ss_pred E--------------EEE--ECCCHHHHHHHHHHHH------------------HHHHhcC-CCCCEEEEEECCCC--cc
Confidence 1 110 1111122221111111 1221111 36899999999964 21
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.....+...+++... +.+++++||+++.|+.++.+.....
T Consensus 140 -~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 179 (213)
T 3cph_A 140 -RVVTADQGEALAKEL--GIPFIESSAKNDDNVNEIFFTLAKL 179 (213)
T ss_dssp -CCSCHHHHHHHHHHH--TCCEEECBTTTTBSSHHHHHHHHHH
T ss_pred -cccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 223334455555444 5689999999999998876555443
No 246
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=108.68 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=80.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+||++|++.+.+..+..... .+.|..-....+.. ....+.+|||||.++ +..+...+.+....+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENIS-ATLGVDFQMKTLIVDGERTVLQLWDTAGQER-FRSIAKSYFRKADGV 104 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTT-CHHHHHHHHHHCSEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCC-CCccceeEEEEEEECCEEEEEEEEECCCCcc-hhhhHHHHHhhCCEE
Confidence 34689999999999999999999886543322 22222100111212 224588999999543 333333332222222
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh-
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI- 399 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~- 399 (561)
+..+ ++.+...+..+..++. .+..... ...|+++|+||+|....
T Consensus 105 ilv~----------------d~~~~~s~~~~~~~~~------------------~i~~~~~-~~~piilv~NK~Dl~~~~ 149 (199)
T 2p5s_A 105 LLLY----------------DVTCEKSFLNIREWVD------------------MIEDAAH-ETVPIMLVGNKADIRDTA 149 (199)
T ss_dssp EEEE----------------ETTCHHHHHTHHHHHH------------------HHHHHC----CCEEEEEECGGGHHHH
T ss_pred EEEE----------------ECCChHHHHHHHHHHH------------------HHHHhcC-CCCCEEEEEECccccccc
Confidence 1111 1111222222222211 1222111 36899999999965311
Q ss_pred ---hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 400 ---KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 ---~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.......+...+++... +.+++++||++|.|+.++.+..
T Consensus 150 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 150 ATEGQKCVPGHFGEKLAMTY--GALFCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp HHTTCCCCCHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHc--CCeEEEeeCCCCCCHHHHHHHH
Confidence 01112233444554444 6789999999999987775443
No 247
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.98 E-value=2.1e-10 Score=105.45 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=82.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+.+ + .+.. ..+...+ ..+.+|||||.++ +..+...+.+....++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI-G-IDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSTVAV 91 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCC-S-EEEEEEEEEETTEEEEEEEEEECCSGG-GGGGSHHHHHTCSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-e-eEEEEEEEEECCeEEEEEEEECCCcHH-HHHHHHHHhcCCCEEE
Confidence 579999999999999999999876544333221 1 1111 1122222 3688999999533 2222222221111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ ++.+...+..+..++.. +..... ...|+++|+||+|. ...
T Consensus 92 ~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~piilv~nK~Dl--~~~ 134 (179)
T 2y8e_A 92 VVY----------------DITNTNSFHQTSKWIDD------------------VRTERG-SDVIIMLVGNKTDL--SDK 134 (179)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHHT-TSSEEEEEEECGGG--GGG
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhcC-CCCcEEEEEECCcc--ccc
Confidence 111 11111222222222211 111111 47899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.....+...+++... +.+++++||+++.|++++.+.
T Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 135 RQVSTEEGERKAKEL--NVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp CCSCHHHHHHHHHHH--TCEEEEEBTTTTBSHHHHHHH
T ss_pred CcCCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHH
Confidence 233334444555444 678999999999998776443
No 248
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.98 E-value=4.3e-10 Score=107.73 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=75.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .+.. -...+.. ....+.+|||||.++ +..+...+.+....++
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT-VFER-YMVNLQVKGKPVHLHIWDTAGQDD-YDRLRPLFYPDASVLL 110 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-------CCC-CCEE-EEEEEEETTEEEEEEEEEC----------------CEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-ccee-EEEEEEECCEEEEEEEEECCCchh-hhHHHHHHhccCCEEE
Confidence 468999999999999999999987653322221 1111 0111222 223688999999543 4333333322222111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
..+ ++.+.+.+..+. .|+. .+.... ...|+++|+||+|.....
T Consensus 111 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~~--~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 111 LCF----------------DVTSPNSFDNIFNRWYP------------------EVNHFC--KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp EEE----------------ETTCHHHHHHHHHTHHH------------------HHHHHC--SSCCEEEEEECGGGGSCH
T ss_pred EEE----------------ECcCHHHHHHHHHHHHH------------------HHHHhC--CCCCEEEEEEChhhhccc
Confidence 111 122223332222 1111 121111 378999999999542110
Q ss_pred h----------ccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 K----------KNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~----------~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
. .....++..+++... +. +++++||++|.|+.++.+...+..
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 155 SLVNKLRRNGLEPVTYHRGQEMARSV--GAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHT--TCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hhhhhhcccccCcccHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0 011223344555443 44 899999999999988866554443
No 249
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.97 E-value=1.4e-10 Score=109.92 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=78.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+. .+.++.+.. ...+...+..+.+|||||.++ ...+...+.+....+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~~t~~~~--~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~-- 96 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG--QHVPTLHPT--SEELTIAGMTFTTFDLGGHIQ-ARRVWKNYLPAINGI-- 96 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCS--CEEEEETTEEEEEEEECC-----CCGGGGGGGGCSEE--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCCCce--eEEEEECCEEEEEEECCCcHh-hHHHHHHHHhcCCEE--
Confidence 3467999999999999999999987543 232222221 122333446788999999533 222222221111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++-+ +.+.+.+..+..++.+ +........+|+++|+||+|. ..
T Consensus 97 ------------i~v~D--~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~NK~Dl--~~-- 140 (198)
T 1f6b_A 97 ------------VFLVD--CADHERLLESKEELDS------------------LMTDETIANVPILILGNKIDR--PE-- 140 (198)
T ss_dssp ------------EEEEE--TTCGGGHHHHHHHHHH------------------HHTCGGGTTSCEEEEEECTTS--TT--
T ss_pred ------------EEEEE--CCCHHHHHHHHHHHHH------------------HHhCcccCCCcEEEEEECCCc--cc--
Confidence 11110 1111111111111111 111111247899999999954 22
Q ss_pred cchHHHHHHHHHhc---------------CCCCeEEeechhhhhhhCCCCH
Q psy17315 403 NKWLPKIKEWVDAN---------------DPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---------------~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
....+++.+++... ..+.+++++||++|.|++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 191 (198)
T 1f6b_A 141 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 191 (198)
T ss_dssp CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHH
T ss_pred cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHH
Confidence 22345565555421 1245799999999999877643
No 250
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.97 E-value=2e-10 Score=106.16 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=75.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .+. ... .+.. ....+.+|||||.++ +..+...+.+....+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT-VFD--NFSANVVVNGATVNLGLWDTAGQED-YNRLRPLSYRGADVF 83 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC-------------CBCCCC-------CEEECCCC-CT-TTTTGGGGGTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCe-eee--eEEEEEEECCEEEEEEEEECCCChh-hhhhHHhhccCCCEE
Confidence 468999999999999999999987654332221 111 111 1222 224567999999532 221111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
.++- ++.+.+.+..+. .++ ..+.... ...|+++|+||+|. .
T Consensus 84 --------------i~v~--d~~~~~s~~~~~~~~~------------------~~~~~~~--~~~piilv~nK~Dl--~ 125 (182)
T 3bwd_D 84 --------------ILAF--SLISKASYENVSKKWI------------------PELKHYA--PGVPIVLVGTKLDL--R 125 (182)
T ss_dssp --------------EEEE--ETTCHHHHHHHHHTHH------------------HHHHHHC--TTCCEEEEEECHHH--H
T ss_pred --------------EEEE--ECCCHHHHHHHHHHHH------------------HHHHHhC--CCCCEEEEEechhh--h
Confidence 1111 112222222221 111 1122111 37899999999954 3
Q ss_pred hhcc----------chHHHHHHHHHhcCCC-CeEEeechhhhhhhCCCCHHH
Q psy17315 400 KKKN----------KWLPKIKEWVDANDPG-ATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 ~~~~----------~~~~~l~~~~~~~~~~-~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.... ...++..++.... + .+++++||++|.|+.++.+..
T Consensus 126 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 126 DDKQFFIDHPGAVPITTVQGEELKKLI--GAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp TCHHHHHHC--CCCCCHHHHHHHHHHH--TCSEEEECCTTTCTTHHHHHHHH
T ss_pred cCcccccccccCCCCCHHHHHHHHHHc--CCCEEEEEECCCCCCHHHHHHHH
Confidence 2111 1233444554443 4 489999999999988775443
No 251
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.97 E-value=9.3e-11 Score=112.32 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=82.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh---HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN---EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~---~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+++..+. ..+..+.++......+...+ ..+.+|||||.++ ...+...+......+
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK-KAVLKDVYYIGASGA 88 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGG-TSCCCHHHHTTCSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchh-hchHHHHHhhcCCEE
Confidence 468999999999999999999977554 23333333321111111111 3588999999532 111111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+ ++- ++.+......+..|+. .+..... ..+|+++|+||+|. ..
T Consensus 89 i--------------~v~--d~~~~~s~~~~~~~~~------------------~~~~~~~-~~~piilv~nK~Dl--~~ 131 (218)
T 4djt_A 89 I--------------LFF--DVTSRITCQNLARWVK------------------EFQAVVG-NEAPIVVCANKIDI--KN 131 (218)
T ss_dssp E--------------EEE--ETTCHHHHHTHHHHHH------------------HHHHHHC-SSSCEEEEEECTTC--C-
T ss_pred E--------------EEE--eCCCHHHHHHHHHHHH------------------HHHHhcC-CCCCEEEEEECCCC--cc
Confidence 1 111 1111122221212211 1222211 35899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
......+.+.+++... +.+++++||++|.|++++.+...+
T Consensus 132 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~ 171 (218)
T 4djt_A 132 RQKISKKLVMEVLKGK--NYEYFEISAKTAHNFGLPFLHLAR 171 (218)
T ss_dssp ---CCHHHHHHHTTTC--CCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHH
Confidence 2223334444554443 678999999999999888554433
No 252
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.97 E-value=3.7e-10 Score=106.78 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=63.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh--ccCCCcccccCCccccc-cchhhh----hHhhhcccHHHHHHHHHHHHHHHhhC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR--AFEDDDVTHVEGEVNPV-RDIEII----NEELRLKDVEHIEKEINKIEKLVQRG 316 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~--~~~~~~v~~~~gt~dp~-~~~~~~----~~el~l~Dt~Gi~~~~~~l~~~~~~~ 316 (561)
..+|.+.|.+|+|||+|++.+.+. .+.... .++.| .+.. ..+... ...+.+|||||.++ +..+...+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-~~t~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 96 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDY-AMTSG-VEVVVAPVTIPDTTVSVELFLLDTAGSDL-YKEQISQYWNG 96 (208)
T ss_dssp EEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHH-HHHHHSTTCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCC-CCccc-eEEEEEEEEECCcccEEEEEEEECCCcHH-HHHHHHHHHhh
Confidence 357999999999999999999987 443222 22112 1111 122222 33688999999654 33333332222
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh--ccCCceEEEecCC
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL--LTAKTQIYLVNLS 394 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~--l~~kP~iiv~NK~ 394 (561)
...++..+ ++.+...+..+..++.. +..... ....|+++|+||+
T Consensus 97 ~d~~i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~~piilv~nK~ 142 (208)
T 2yc2_C 97 VYYAILVF----------------DVSSMESFESCKAWFEL------------------LKSARPDRERPLRAVLVANKT 142 (208)
T ss_dssp CCEEEEEE----------------ETTCHHHHHHHHHHHHH------------------HHHHCSCTTSCCEEEEEEECC
T ss_pred CcEEEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhhcccccCCcEEEEEECc
Confidence 22111111 12222333333333222 111111 1378999999999
Q ss_pred hhhhhh-hccchHHHHHHHHHhcCCCCeEEeechhh-hhhhCCCCHHHHHHHHH
Q psy17315 395 AKDYIK-KKNKWLPKIKEWVDANDPGATIIPFSGVF-EHQLVDMPDDERQRYLD 446 (561)
Q Consensus 395 D~d~~~-~~~~~~~~l~~~~~~~~~~~~vi~iSA~~-~~gl~~L~~~~~~~~~~ 446 (561)
|. .. ......+++.+++... +.+++++||++ +.|+.++.+.....+.+
T Consensus 143 Dl--~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 143 DL--PPQRHQVRLDMAQDWATTN--TLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp ---------CCCHHHHHHHHHHT--TCEEEECCC-------CHHHHHHHHHHHH
T ss_pred cc--chhhccCCHHHHHHHHHHc--CCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 54 32 2233345666666655 67899999999 99999987776655443
No 253
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.96 E-value=3.5e-10 Score=123.84 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCC---cccCCCcccccCcccc----------------------------------
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSA---AAENFPFCTIDPNENN---------------------------------- 137 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~---~~~~~~~~T~~~~~~~---------------------------------- 137 (561)
..++|+++|.+|||||||+|+|++... .+++.|++|+......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 457899999999999999999999884 5788887765211000
Q ss_pred ---ccC----CeEEEEeCCCcccCCcc--cccc--ccccccccccCCEEEEEeccc
Q psy17315 138 ---KVP----AFLNVVDIAGLVKGAAE--GQGL--GNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 138 ---~~~----~~i~l~DtpG~~~~~~~--~~~~--~~~~l~~i~~~D~il~VvD~~ 182 (561)
..+ .++.||||||+..+... ...+ .......++.+|++++|+|++
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~ 199 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAH 199 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETT
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCC
Confidence 000 36899999999863321 1111 122234568899999999885
No 254
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.96 E-value=3.4e-10 Score=121.41 Aligned_cols=150 Identities=19% Similarity=0.077 Sum_probs=85.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC--Cc-----------------------c------cCCCcccccCcccc--ccCCe
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS--AA-----------------------A------ENFPFCTIDPNENN--KVPAF 142 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~--~~-----------------------~------~~~~~~T~~~~~~~--~~~~~ 142 (561)
.++|+++|.+|+|||||+|+|++.. .. + ...+|.|.+..... .....
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4789999999999999999998641 00 0 01256676654332 12347
Q ss_pred EEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchh--hhccchhhHhhhHHHHHHHHHHhcch----hhc
Q psy17315 143 LNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIF--FISLNTITIWRNLKLLETRIRDLRRS----VDA 216 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~----v~N 216 (561)
+.++||||... +.......++.+|++++|+|++..... +.. .....+.+. .+..+..+ ++|
T Consensus 87 ~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~--~~qt~~~~~----~~~~~~v~~iivviN 153 (458)
T 1f60_A 87 VTVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVGEFEAGISK--DGQTREHAL----LAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCT--TSHHHHHHH----HHHHTTCCEEEEEEE
T ss_pred EEEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCc--chhHHHHHH----HHHHcCCCeEEEEEE
Confidence 99999999642 222345567899999999998632100 000 001111111 12222222 799
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKS 258 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks 258 (561)
|+|+....... ......+..+..... ..+.+.+||++|.|+.
T Consensus 154 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 154 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence 99997311000 001122333333333 2578999999999975
No 255
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.96 E-value=2.3e-10 Score=105.34 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=83.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh---HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN---EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~---~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .| .+.. ..+...+ ..+.+|||||.++ +..+...+.+....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t-~~-~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQT-IG-LDFFLRRITLPGNLNVTLQIWDIGGQTI-GGKMLDKYIYGAQG 82 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHT-TT-SSEEEEEEEETTTEEEEEEEEECTTCCT-TCTTHHHHHTTCSE
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCc-ee-EEEEEEEEEeCCCCEEEEEEEECCCCcc-ccchhhHHHhhCCE
Confidence 357999999999999999999988654222222 12 1111 1222222 4688999999532 22222222222221
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCc-eEEEecCChhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKT-QIYLVNLSAKD 397 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP-~iiv~NK~D~d 397 (561)
++..+ ++.+.+.+..+..++.. +..... ....| +++|+||+|.
T Consensus 83 ~i~v~----------------d~~~~~s~~~~~~~~~~------------------i~~~~~~~~~~~~iilv~nK~Dl- 127 (178)
T 2hxs_A 83 VLLVY----------------DITNYQSFENLEDWYTV------------------VKKVSEESETQPLVALVGNKIDL- 127 (178)
T ss_dssp EEEEE----------------ETTCHHHHHTHHHHHHH------------------HHHHHHHHTCCCEEEEEEECGGG-
T ss_pred EEEEE----------------ECCCHHHHHHHHHHHHH------------------HHHHhcccCCCCeEEEEEEcccc-
Confidence 11111 11222222222222221 111110 02456 7899999954
Q ss_pred hhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 398 YIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
........+.+.+++... +.+++++||++|.|+.++.+...
T Consensus 128 -~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 168 (178)
T 2hxs_A 128 -EHMRTIKPEKHLRFCQEN--GFSSHFVSAKTGDSVFLCFQKVA 168 (178)
T ss_dssp -GGGCSSCHHHHHHHHHHH--TCEEEEECTTTCTTHHHHHHHHH
T ss_pred -ccccccCHHHHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHH
Confidence 322222344555555544 57899999999999887755443
No 256
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.95 E-value=3.9e-10 Score=116.09 Aligned_cols=152 Identities=22% Similarity=0.251 Sum_probs=84.6
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhc------CC-CcccCCCccc-----------------------------------
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTK------SS-AAAENFPFCT----------------------------------- 130 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~------~~-~~~~~~~~~T----------------------------------- 130 (561)
...+..++++|.||||||||+|+|++ .. .-.+..|+.+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35667899999999999999999984 22 1112122221
Q ss_pred --ccCccc----cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHH
Q psy17315 131 --IDPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLE 204 (561)
Q Consensus 131 --~~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~ 204 (561)
++.... ...+.++.|+||||+..+.. .....+|++++|+|+...+. ++.+.
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~----------~v~~~~d~vl~v~d~~~~~~-------------~~~i~ 188 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET----------AVADLTDFFLVLMLPGAGDE-------------LQGIK 188 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH----------HHHTTSSEEEEEECSCC-------------------CC
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh----------hHHhhCCEEEEEEcCCCccc-------------HHHHH
Confidence 111100 01255799999999964321 11367899999998642110 00000
Q ss_pred HHHHHhcc-hhhccccccCcCCCCCccHHHHHHHhhhcC------CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 205 TRIRDLRR-SVDAKADSKKKMGPKKTDEGEKKMLLGRVG------TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 205 ~~l~~~~~-~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~------~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+.+... .+.||+|+.............+........ ..+.+.+||+++.|+..|++.|.+.
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 01112111 267999975211000000111222222222 3467889999999999999999875
No 257
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.95 E-value=7.4e-11 Score=119.65 Aligned_cols=159 Identities=21% Similarity=0.245 Sum_probs=90.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccch-hhhhHhhhcccHHHHH-HHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDI-EIINEELRLKDVEHIE-KEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~-~~~~~el~l~Dt~Gi~-~~~~~l~~~~~~~~~~~~ 321 (561)
..+++.|.+|+|||||+|+|++..+. .++..++++ +....+ ...+..+.+|||||+. +....+...+........
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~--i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKIS--ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEE--ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcc--ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 47999999999999999999997532 233344554 222222 2234578899999986 444444433322221111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+|++..|++ . ..++..+..++..+.. ..+|+++|+||+|. ...
T Consensus 87 ---------------------~~~D~vl~Vvd------~-----~~~~~~~~~i~~~l~~-~~~P~ilvlNK~D~--~~~ 131 (301)
T 1ega_A 87 ---------------------GDVELVIFVVE------G-----TRWTPDDEMVLNKLRE-GKAPVILAVNKVDN--VQE 131 (301)
T ss_dssp ---------------------CCEEEEEEEEE------T-----TCCCHHHHHHHHHHHS-SSSCEEEEEESTTT--CCC
T ss_pred ---------------------hcCCEEEEEEe------C-----CCCCHHHHHHHHHHHh-cCCCEEEEEECccc--Ccc
Confidence 11133221111 0 0133444444433322 47999999999954 221
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.....+.+.++.+.. ...+++++||+++.|+.+|.+...
T Consensus 132 ~~~~~~~l~~l~~~~-~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 132 KADLLPHLQFLASQM-NFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHHHHTTS-CCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CcCceEEEECCCCCCHHHHHHHHH
Confidence 122334444444332 234799999999999888765543
No 258
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.95 E-value=2e-10 Score=110.78 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=82.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+||++|++.+.+..+.....+++.-+. ....+...+ ..+.+|||||.++ +..+...+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~---- 86 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEF-ATRTLEIEGKRIKAQIWDTAGQER-YRAITSAYYRGA---- 86 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSE-EEEEEEETTEEEEEEEECCTTTTT-TTCCCGGGTTTC----
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEEECCEEEEEEEEECCCccc-hhhhHHHHhccC----
Confidence 36799999999999999999999865543333221111 011222222 4688999999432 211111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
|...++- ++.+.+.+..+..|+.. +.... ....|+++|+||+|. ...
T Consensus 87 ----------d~vilV~--D~~~~~s~~~~~~~l~~------------------i~~~~-~~~~piilv~nK~Dl--~~~ 133 (223)
T 3cpj_B 87 ----------VGALIVY--DISKSSSYENCNHWLSE------------------LRENA-DDNVAVGLIGNKSDL--AHL 133 (223)
T ss_dssp ----------CEEEEEE--C-CCHHHHHHHHHHHHH------------------HHHHC-C--CEEEEEECCGGG--GGG
T ss_pred ----------CEEEEEE--eCCCHHHHHHHHHHHHH------------------HHHhC-CCCCeEEEEEECccc--ccc
Confidence 1111111 12222333322222221 11111 136899999999954 332
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.....+.+.+++... +.+++++||+++.|++++.+.....
T Consensus 134 ~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 134 RAVPTEESKTFAQEN--QLLFTETSALNSENVDKAFEELINT 173 (223)
T ss_dssp CCSCHHHHHHHHHHT--TCEEEECCCC-CCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 233344555665554 6789999999999998775554433
No 259
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.95 E-value=2.9e-10 Score=105.87 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=82.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+.. ...+.++.|.. ...+...+..+.+|||||.++ +..+...+.+....+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~~-~~~~~~~~~~~~d~i-- 89 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISPTLGFN--IKTLEHRGFKLNIWDVGGQKS-LRSYWRNYFESTDGL-- 89 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCCCSSEE--EEEEEETTEEEEEEEECCSHH-HHTTGGGGCTTCSEE--
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccccCccc--eEEEEECCEEEEEEECCCCHh-HHHHHHHHhcCCCEE--
Confidence 45789999999999999999999875 33333332321 122333456788999999644 222222221111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++-+ +.+.+.+..+..++.. +.........|+++|+||+|. ..
T Consensus 90 ------------i~v~d--~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~nK~Dl--~~-- 133 (186)
T 1ksh_A 90 ------------IWVVD--SADRQRMQDCQRELQS------------------LLVEERLAGATLLIFANKQDL--PG-- 133 (186)
T ss_dssp ------------EEEEE--TTCGGGHHHHHHHHHH------------------HHTCGGGTTCEEEEEEECTTS--TT--
T ss_pred ------------EEEEE--CcCHHHHHHHHHHHHH------------------HHhChhcCCCcEEEEEeCccC--CC--
Confidence 11110 1111111111111111 111111247899999999954 32
Q ss_pred cchHHHHHHHHHh---cCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDA---NDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~---~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+.+.. ...+.+++++||+++.|++++.+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 134 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 1223444443321 01256899999999999888755443
No 260
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.95 E-value=1.1e-09 Score=120.46 Aligned_cols=151 Identities=16% Similarity=0.100 Sum_probs=88.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc---------c------cCCCcccccCcccc--cc-----CCeEEEEeCCCcccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA---------A------ENFPFCTIDPNENN--KV-----PAFLNVVDIAGLVKG 154 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~---------~------~~~~~~T~~~~~~~--~~-----~~~i~l~DtpG~~~~ 154 (561)
.+|+++|.+|+|||||+++|+..... + ....|.|....... +. ...+.||||||....
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 57999999999999999999753210 0 11245565433221 11 136889999998643
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccH
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~ 231 (561)
.. .....++.+|++++|+|++... ... ....+.. ......+ +.||+|+.... ..
T Consensus 87 ~~-------ev~r~l~~aD~aILVVDa~~gv-------~~q---t~~~~~~-a~~~~ipiIvviNKiDl~~a~-----~~ 143 (600)
T 2ywe_A 87 SY-------EVSRALAACEGALLLIDASQGI-------EAQ---TVANFWK-AVEQDLVIIPVINKIDLPSAD-----VD 143 (600)
T ss_dssp HH-------HHHHHHHTCSEEEEEEETTTBC-------CHH---HHHHHHH-HHHTTCEEEEEEECTTSTTCC-----HH
T ss_pred HH-------HHHHHHHhCCEEEEEEECCCCc-------cHH---HHHHHHH-HHHCCCCEEEEEeccCccccC-----HH
Confidence 32 2334568899999999986321 011 1111111 1122222 89999997431 12
Q ss_pred HHHHHHhhhcCC--CcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 232 GEKKMLLGRVGT--NLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 232 ~~l~~l~~~~~~--~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
.....+...+.. ...+.+||++|.|+..|++++.+..+.
T Consensus 144 ~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 144 RVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 223334333322 247999999999999999999987643
No 261
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.94 E-value=2.3e-10 Score=107.14 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=82.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccch
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPE 323 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~ 323 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .|.. ...+...+..+.+|||||.++ +..+...+.+....++..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~--~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPT-VGFN--MRKITKGNVTIKLWDIGGQPR-FRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCC-CSEE--EEEEEETTEEEEEEEECCSHH-HHTTHHHHHTTCSEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCC-Ccee--EEEEEeCCEEEEEEECCCCHh-HHHHHHHHHccCCEEEEE
Confidence 467999999999999999999988655333222 2221 112233345788999999654 333333333222222111
Q ss_pred hhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc
Q psy17315 324 YVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN 403 (561)
Q Consensus 324 ~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~ 403 (561)
+ ++.+.+.+..+..++.. +.........|+++|+||+|. .. .
T Consensus 98 ~----------------D~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~NK~Dl--~~--~ 139 (188)
T 1zd9_A 98 V----------------DAADQEKIEASKNELHN------------------LLDKPQLQGIPVLVLGNKRDL--PG--A 139 (188)
T ss_dssp E----------------ETTCGGGHHHHHHHHHH------------------HHTCGGGTTCCEEEEEECTTS--TT--C
T ss_pred E----------------ECCCHHHHHHHHHHHHH------------------HHhCcccCCCCEEEEEECCCC--cc--C
Confidence 1 01111112222222111 111111247899999999954 32 1
Q ss_pred chHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 404 KWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 404 ~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...+++.+.+... ..+.+++++||++|.|++++.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 179 (188)
T 1zd9_A 140 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179 (188)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHH
Confidence 1123333322210 124578999999999987775443
No 262
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.48 E-value=8.8e-11 Score=111.39 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=84.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+.+ +.. ....+.. ....+.+|||||.++ +..+...+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~------- 98 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDN-YSANVMVDGKPVNLGLWDTAGQED-YDRLRPLS------- 98 (204)
Confidence 34679999999999999999999876543322221 111 0111222 224567999999643 22222111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhh-ccCCceEEEecCChhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL-LTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~-l~~kP~iiv~NK~D~d~~ 399 (561)
+..++++..|.+.... .. +......++..+.. ...+|+++|+||+|....
T Consensus 99 ---------------------~~~~d~iilv~D~~~~--~s------~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 99 ---------------------YPQTDVFLICFSLVSP--AS------FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 1223666666664332 00 11100011111111 126899999999964211
Q ss_pred hhc----------cchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHH
Q psy17315 400 KKK----------NKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 400 ~~~----------~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~ 441 (561)
... ....+...++++.. +. +++++||++|.|++++.+...
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 150 KDTIEKLKEKKLTPITYPQGLAMAKEI--GAVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 000 11112222333322 33 789999999999999866543
No 263
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.94 E-value=4.9e-10 Score=111.83 Aligned_cols=151 Identities=15% Similarity=0.211 Sum_probs=83.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHHHHH-----HHHHHHHhhC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIEKEI-----NKIEKLVQRG 316 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~~~~-----~~l~~~~~~~ 316 (561)
..+|.+.|.+|+|||+|+|.+++..+..++++ |+ +++.. .+.. +..+.+|||||.++.. +.+...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p---g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP---GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS---CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC---CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 35799999999999999999998765444443 44 33332 2333 5678999999964310 1222222211
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChh
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~ 396 (561)
.. + +++..|++.. . .+....++..+.. .++|+++|+||+|.
T Consensus 79 ~~------------~--------------d~vi~V~D~t-----------~-~e~~~~~~~~l~~-~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 79 QR------------A--------------DSILNVVDAT-----------N-LERNLYLTTQLIE-TGIPVTIALNMIDV 119 (272)
T ss_dssp TC------------C--------------SEEEEEEEGG-----------G-HHHHHHHHHHHHH-TCSCEEEEEECHHH
T ss_pred CC------------C--------------CEEEEEecCC-----------c-hHhHHHHHHHHHh-cCCCEEEEEEChhh
Confidence 00 0 1100000000 0 0011111111211 47999999999965
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
..........+.+.+.+ +.+++++||++|.|+++|.+....
T Consensus 120 ~~~~~~~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 120 LDGQGKKINVDKLSYHL-----GVPVVATSALKQTGVDQVVKKAAH 160 (272)
T ss_dssp HHHTTCCCCHHHHHHHH-----TSCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHc-----CCCEEEEEccCCCCHHHHHHHHHH
Confidence 32211122233443332 678999999999999888665543
No 264
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.94 E-value=5.8e-10 Score=105.06 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=82.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC-CCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE-DDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~-~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
.+|.+.|.+|+|||+|++++++.... ...++++ |. +.. ..+.+.+ ..+.+|||+|.......+...+.+.....
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVL-GE-DTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGG-CT-TEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCcccccc-ce-eEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 57999999999999999999975321 1222221 21 111 1222222 34678999885431111111111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
+..+ .+.+.+.+..+..+... +.......+.|+++|.||+|. ..
T Consensus 85 i~v~----------------dv~~~~s~~~~~~~~~~------------------l~~~~~~~~~piilV~NK~Dl--~~ 128 (192)
T 2cjw_A 85 LIVY----------------SITDRASFEKASELRIQ------------------LRRARQTEDIPIILVGNKSDL--VR 128 (192)
T ss_dssp EEEE----------------ETTCHHHHHHHHHHHHH------------------HHHHTTTSCCCEEEEEECTTC--GG
T ss_pred EEEE----------------ECCCHHHHHHHHHHHHH------------------HHHhhCCCCCeEEEEEechhh--hc
Confidence 1111 22333443333222211 222211136899999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
......+....+.... +.+++++||++|.|+.++.+.....+.
T Consensus 129 ~r~v~~~~~~~~a~~~--~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 129 XREVSVSEGRAXAVVF--DXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp GCCSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHh--CCceEEeccccCCCHHHHHHHHHHHHH
Confidence 2222233333343333 568999999999999998777665543
No 265
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.94 E-value=3.3e-10 Score=119.34 Aligned_cols=155 Identities=16% Similarity=0.120 Sum_probs=92.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc----------------ccCCCcccccCccccc--cCCeEEEEeCCCcccCCcc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA----------------AENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~----------------~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~~~ 157 (561)
.++|+++|.+|+|||||+|+|++.... .....|.|.+...... ....+.++||||.....
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~-- 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV-- 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH--
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH--
Confidence 478999999999999999999874200 0113456655432211 23579999999985321
Q ss_pred ccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccHHH
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDEGE 233 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~~~ 233 (561)
......++.+|++++|+|++... .....+.+. .+.....+ ++||+|+......-.....+
T Consensus 81 -----~~~~~~~~~aD~~ilVvda~~g~-------~~qt~e~l~----~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~ 144 (397)
T 1d2e_A 81 -----KNMITGTAPLDGCILVVAANDGP-------MPQTREHLL----LARQIGVEHVVVYVNKADAVQDSEMVELVELE 144 (397)
T ss_dssp -----HHHHHTSSCCSEEEEEEETTTCS-------CHHHHHHHH----HHHHTTCCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred -----HHHHhhHhhCCEEEEEEECCCCC-------CHHHHHHHH----HHHHcCCCeEEEEEECcccCCCHHHHHHHHHH
Confidence 22345578899999999986321 111112221 22222222 79999997411000001122
Q ss_pred HHHHhhhcC----CCcEEEEEccCCCC----------HHHHHHHHHhhc
Q psy17315 234 KKMLLGRVG----TNLKVGIVGVPNVG----------KSTFFNVLTKRA 268 (561)
Q Consensus 234 l~~l~~~~~----~~~~i~isg~~~~G----------ks~l~~~l~~~~ 268 (561)
+..+..... ..+.+.+||++|.| +..|+++|.+..
T Consensus 145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 333333332 35789999999763 789999998754
No 266
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.94 E-value=3.5e-10 Score=105.77 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=89.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCc---------ccccCCc-ccccc--chhhhhHhhhcccHHHHHHHHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDD---------VTHVEGE-VNPVR--DIEIINEELRLKDVEHIEKEINKIEK 311 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~---------v~~~~gt-~dp~~--~~~~~~~el~l~Dt~Gi~~~~~~l~~ 311 (561)
..+|.+.|.+|+||++|++.+.+....... ..++.|. ..... .+......+.+|||||.++ +..+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~ 92 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF-YNASRK 92 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS-CSHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH-HHHHHH
Confidence 357999999999999999988876422110 0000010 00000 1111234688999999432 334444
Q ss_pred HHhhCCccccchhhhhhhhhhhhhhhccCCCC------hHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCC
Q psy17315 312 LVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIG------HEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385 (561)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~------~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~k 385 (561)
.+.+....++..+ ++. ..+.+..+..|+.+ . . ......
T Consensus 93 ~~~~~~d~~i~v~----------------D~~~~~~~~~~~s~~~l~~~l~~--~----------------~--~~~~~~ 136 (198)
T 3t1o_A 93 LILRGVDGIVFVA----------------DSAPNRLRANAESMRNMRENLAE--Y----------------G--LTLDDV 136 (198)
T ss_dssp HHTTTCCEEEEEE----------------ECCGGGHHHHHHHHHHHHHHHHH--T----------------T--CCTTSS
T ss_pred HHHhcCCEEEEEE----------------ECCcchhhHhHHHHHHHHHHHHh--h----------------c--cccCCC
Confidence 4433332221111 111 22333333333332 0 0 011478
Q ss_pred ceEEEecCChhhhhhhccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 386 P~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
|+++|+||+|. .. ....+++.++++.. +. +++++||++|.|+.++.+...+...+
T Consensus 137 piilv~NK~Dl--~~--~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 137 PIVIQVNKRDL--PD--ALPVEMVRAVVDPE--GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CEEEEEECTTS--TT--CCCHHHHHHHHCTT--CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred CEEEEEEchhc--cc--ccCHHHHHHHHHhc--CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 99999999954 32 24456666776654 55 89999999999998886665554433
No 267
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.93 E-value=4.9e-10 Score=104.55 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=81.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+. .+.++.|.. ...+...+..+.+|||||.++ +..+...+.+....++.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HTSPTIGSN--VEEIVINNTRFLMWDIGGQES-LRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EEECCSCSS--CEEEEETTEEEEEEECCC-----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCCccc--eEEEEECCEEEEEEECCCCHh-HHHHHHHHhcCCCEEEE
Confidence 4578999999999999999999977554 232222321 122333456789999999643 22222222222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ + +.+.+.+..+..++.. +.........|+++|+||+|. ..
T Consensus 90 v~--------------d--~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~NK~Dl--~~-- 131 (187)
T 1zj6_A 90 VV--------------D--STDRERISVTREELYK------------------MLAHEDLRKAGLLIFANKQDV--KE-- 131 (187)
T ss_dssp EE--------------E--TTCTTTHHHHHHHHHH------------------HHTSGGGTTCEEEEEEECTTS--TT--
T ss_pred EE--------------e--CCCHHHHHHHHHHHHH------------------HHhchhhCCCeEEEEEECCCC--cC--
Confidence 11 0 0111111111111111 111111247899999999954 32
Q ss_pred cchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+.+... ..+.+++++||++|.|++++.+...
T Consensus 132 ~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (187)
T 1zj6_A 132 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173 (187)
T ss_dssp CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHH
Confidence 11233444443211 1246899999999999887755443
No 268
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.93 E-value=1.2e-10 Score=130.44 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=90.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCccc--------------------------------------
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNEN-------------------------------------- 136 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~-------------------------------------- 136 (561)
.++|+++|.+|+|||||+|+|+|... +.+.- .+|+.+...
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 36899999999999999999999873 33322 344322100
Q ss_pred --------------c--ccCCeEEEEeCCCcccCCcc--c----ccccccccccc-ccCCEEEEEecccccchhhhccch
Q psy17315 137 --------------N--KVPAFLNVVDIAGLVKGAAE--G----QGLGNAFLSHI-SACDAIFHLCKEKLRNIFFISLNT 193 (561)
Q Consensus 137 --------------~--~~~~~i~l~DtpG~~~~~~~--~----~~~~~~~l~~i-~~~D~il~VvD~~~~~~~~~~~~~ 193 (561)
. ....++.|+||||+...... . ..+......++ ..+|++++|+|++..-
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~-------- 201 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL-------- 201 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCS--------
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCc--------
Confidence 0 01235889999999863211 0 11111112222 6789999999876210
Q ss_pred hhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccHHHHHH-Hhh-hcCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 194 ITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDEGEKKM-LLG-RVGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 194 ~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l~~-l~~-~~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.... ...+.+++.....+ |.||+|+.+..... ...... ... ..+....+.+|+.+|.|+.+|++++.+.
T Consensus 202 -~~~d-~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~---~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 202 -ANSD-ALKIAKEVDPQGQRTIGVITKLDLMDEGTDA---RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp -SSCH-HHHHHHHHCTTCSSEEEEEECTTSSCTTCCS---HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred -chhH-HHHHHHHHHhcCCCEEEEEeCcccCCcchhh---HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 0000 00122233333333 89999998543321 111110 000 0123357889999999999999999873
No 269
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.93 E-value=3.6e-10 Score=104.73 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=37.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
.+|.+.|.+|+|||+|++.+.+..+.....+.+.........+......+.+|||||.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 57999999999999999999987654333322211110001111222457799999963
No 270
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.93 E-value=2.8e-10 Score=109.16 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=85.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .+.. .....+......+.+|||+|.++ +..+...+.+....++.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPT-VFENYTACLETEEQRVELSLWDTSGSPY-YDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCC-SEEEEEEEEEC--CEEEEEEEEECCSGG-GTTTGGGGCTTCSEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCe-eeeeEEEEEEECCEEEEEEEEECCCCHh-HHHHHHHHcCCCeEEEE
Confidence 468999999999999999999998654333222 1211 00011222234688999999532 22222222211111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHH-HHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh--
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVK-IKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI-- 399 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~-v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~-- 399 (561)
.+ ++.+.+.+.. +..|+.. +.... ...|+++|+||+|....
T Consensus 105 v~----------------d~~~~~s~~~~~~~~~~~------------------i~~~~--~~~piilv~nK~Dl~~~~~ 148 (214)
T 3q3j_B 105 CF----------------DISRPETVDSALKKWRTE------------------ILDYC--PSTRVLLIGCKTDLRTDLS 148 (214)
T ss_dssp EE----------------ETTCTHHHHHHHTHHHHH------------------HHHHC--TTSEEEEEEECGGGGGCHH
T ss_pred EE----------------ECcCHHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEEChhhccchh
Confidence 11 1122233222 1122111 22111 37899999999964210
Q ss_pred --------hhccchHHHHHHHHHhcCCCC-eEEeechhhhhh-hCCCCHHHHHH
Q psy17315 400 --------KKKNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQ-LVDMPDDERQR 443 (561)
Q Consensus 400 --------~~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~g-l~~L~~~~~~~ 443 (561)
.......+...+++... +. +++.+||++|.| +.++.+.....
T Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 149 TLMELSHQKQAPISYEQGCAIAKQL--GAEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHH--TCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred hhhhhcccccCccCHHHHHHHHHHc--CCCEEEEeccCCCcccHHHHHHHHHHH
Confidence 00123344555555554 55 899999999998 98886655443
No 271
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.92 E-value=7.5e-10 Score=115.05 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=22.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
++|++||.+|||||||+|+|+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999976
No 272
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.92 E-value=3.9e-10 Score=106.76 Aligned_cols=57 Identities=35% Similarity=0.362 Sum_probs=37.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi 302 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ +. +-...+... ...+.+|||||.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~l~i~Dt~G~ 83 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FE-NYIADIEVDGKQVELALWDTAGQ 83 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSS-CC-CCEEEEEETTEEEEEEEECCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc-cc-eEEEEEEECCEEEEEEEEECCCc
Confidence 3579999999999999999999986543332221 11 111112222 236889999995
No 273
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.92 E-value=3.9e-10 Score=112.75 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=82.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHHHHH---------HHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIEKEI---------NKIEKLV 313 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~~~~---------~~l~~~~ 313 (561)
.+|.+.|.+|+|||+|+|++++..+. +...+|+ +++.. .+...+..+.+|||||+.... +.+.+.+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~---v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQR---VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEE---EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcc---cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 57999999999999999999998643 3334454 34433 234445678899999964311 0111111
Q ss_pred hhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecC
Q psy17315 314 QRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNL 393 (561)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK 393 (561)
... ..+|++..|++.. . .+.....+..+.. .+.|+++|+||
T Consensus 81 ~~~--------------------------~~~d~ii~VvD~~-----------~-~~~~~~~~~~l~~-~~~p~ivv~NK 121 (274)
T 3i8s_A 81 ILS--------------------------GDADLLINVVDAS-----------N-LERNLYLTLQLLE-LGIPCIVALNM 121 (274)
T ss_dssp HHH--------------------------TCCSEEEEEEEGG-----------G-HHHHHHHHHHHHH-HTCCEEEEEEC
T ss_pred Hhh--------------------------cCCCEEEEEecCC-----------C-hHHHHHHHHHHHh-cCCCEEEEEEC
Confidence 000 0001111111100 0 0112222222222 47999999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
+|...........+.+.+.+ +.+++++||++|.|+++|.+..
T Consensus 122 ~Dl~~~~~~~~~~~~l~~~l-----g~~~i~~SA~~g~gi~el~~~i 163 (274)
T 3i8s_A 122 LDIAEKQNIRIEIDALSARL-----GCPVIPLVSTRGRGIEALKLAI 163 (274)
T ss_dssp HHHHHHTTEEECHHHHHHHH-----TSCEEECCCGGGHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHhc-----CCCEEEEEcCCCCCHHHHHHHH
Confidence 96432211122344444433 6789999999999998875544
No 274
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.92 E-value=1e-09 Score=100.47 Aligned_cols=56 Identities=30% Similarity=0.484 Sum_probs=37.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
.++.+.|.+|+|||+|++.+++..+..+.++ ++ +++.. .+...+..+.+|||||.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWP---GVTVEKKEGEFEYNGEKFKVVDLPGVY 61 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC--------CCCCCEEEEEETTEEEEEEECCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCC---CcceeeeEEEEEECCcEEEEEECCCcc
Confidence 5799999999999999999998765444433 32 23322 223334578899999964
No 275
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.92 E-value=4e-10 Score=120.13 Aligned_cols=146 Identities=15% Similarity=0.037 Sum_probs=80.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-----------CcccCCCcccc----------------------cCcccc--ccC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-----------AAAENFPFCTI----------------------DPNENN--KVP 140 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-----------~~~~~~~~~T~----------------------~~~~~~--~~~ 140 (561)
.++|+++|.+|+|||||+|+|++.. ...+..+|+|. +..... ...
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 4789999999999999999998653 11223344432 211111 123
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDA 216 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~N 216 (561)
..+.++||||..... ......++.+|++++|+|++... .....+.+. .+..+.. + ++|
T Consensus 104 ~~~~iiDtpGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g~-------~~qt~~~l~----~~~~~~~~~iIvviN 165 (434)
T 1zun_B 104 RKFIIADTPGHEQYT-------RNMATGASTCDLAIILVDARYGV-------QTQTRRHSY----IASLLGIKHIVVAIN 165 (434)
T ss_dssp EEEEEEECCCSGGGH-------HHHHHHHTTCSEEEEEEETTTCS-------CHHHHHHHH----HHHHTTCCEEEEEEE
T ss_pred ceEEEEECCChHHHH-------HHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHH----HHHHcCCCeEEEEEE
Confidence 468999999964322 22344578999999999986321 011111111 1222222 2 799
Q ss_pred cccccCcCCCC-CccHHHHHHHhhhcC----CCcEEEEEccCCCCHHH
Q psy17315 217 KADSKKKMGPK-KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKST 259 (561)
Q Consensus 217 K~D~~~~~~~~-~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks~ 259 (561)
|+|+....... ......+..+..... ..+.+.+||++|.|+..
T Consensus 166 K~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 99997421000 001122333333332 24679999999999875
No 276
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.91 E-value=1.7e-09 Score=115.18 Aligned_cols=152 Identities=15% Similarity=0.086 Sum_probs=81.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC--Cc-----------------------------ccCCCcccccCcccc--ccCCe
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS--AA-----------------------------AENFPFCTIDPNENN--KVPAF 142 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~--~~-----------------------------~~~~~~~T~~~~~~~--~~~~~ 142 (561)
.++|+++|.+|+|||||+|+|++.. .. ....+|+|.+..... .....
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 4789999999999999999998641 10 011356777654322 23457
Q ss_pred EEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcc-h---hhccc
Q psy17315 143 LNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRR-S---VDAKA 218 (561)
Q Consensus 143 i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~---v~NK~ 218 (561)
+.+|||||..... ......++.+|++++|+|++...... ......+.......+..+.. + ++||+
T Consensus 86 ~~iiDtpG~~~f~-------~~~~~~~~~aD~~ilVvDa~~gsfe~----~~~~~~qt~~~~~~~~~~~~~~iivviNK~ 154 (435)
T 1jny_A 86 FTIIDAPGHRDFV-------KNMITGASQADAAILVVSAKKGEYEA----GMSVEGQTREHIILAKTMGLDQLIVAVNKM 154 (435)
T ss_dssp EEECCCSSSTTHH-------HHHHHTSSCCSEEEEEEECSTTHHHH----HHSTTCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred EEEEECCCcHHHH-------HHHHhhhhhcCEEEEEEECCCCcccc----ccccchHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 9999999975432 22455678999999999986311000 00001111111112222232 2 79999
Q ss_pred cccCcCCCC---CccHHHHHHHhhhcC----CCcEEEEEccCCCCHH
Q psy17315 219 DSKKKMGPK---KTDEGEKKMLLGRVG----TNLKVGIVGVPNVGKS 258 (561)
Q Consensus 219 D~~~~~~~~---~~~~~~l~~l~~~~~----~~~~i~isg~~~~Gks 258 (561)
|+....... .....++..+..... ..+.+.+||++|.|+.
T Consensus 155 Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 155 DLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp GGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence 997521100 001122333333332 2568999999999986
No 277
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.90 E-value=3.5e-10 Score=105.82 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=83.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+....+.++.+.. ...+...+..+.+|||||.++ +..+...+.+....+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~i-- 94 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSSLSFTVFDMSGQGR-YRNLWEHYYKEGQAI-- 94 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSSCEEEEEEECCSTT-TGGGGGGGGGGCSEE--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECCEEEEEEECCCCHH-HHHHHHHHHhcCCEE--
Confidence 346899999999999999999998863223333322321 122333346789999999532 222221111111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhc--cCCceEEEecCChhhhhh
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLL--TAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l--~~kP~iiv~NK~D~d~~~ 400 (561)
.++- ++.+.+.+..+..++.. +...... ..+|+++|+||+|. ..
T Consensus 95 ------------i~v~--d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~~~piilv~nK~Dl--~~ 140 (190)
T 2h57_A 95 ------------IFVI--DSSDRLRMVVAKEELDT------------------LLNHPDIKHRRIPILFFANKMDL--RD 140 (190)
T ss_dssp ------------EEEE--ETTCHHHHHHHHHHHHH------------------HHHSTTTTTSCCCEEEEEECTTS--TT
T ss_pred ------------EEEE--ECCCHHHHHHHHHHHHH------------------HHhChhhccCCCeEEEEEeCcCc--cc
Confidence 1111 11112222222222211 1111111 36899999999954 32
Q ss_pred hccchHHHHHHHHH--hc-CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 401 KKNKWLPKIKEWVD--AN-DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 401 ~~~~~~~~l~~~~~--~~-~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+++.+.+. .. ..+.+++++||++|.|++++.+..
T Consensus 141 --~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 141 --AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp --CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred --CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHH
Confidence 222345555442 11 125689999999999988775443
No 278
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.90 E-value=8e-10 Score=100.26 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=81.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~l 325 (561)
+|.+.|.+|+|||+|++.+.+..+.. ..+ +.+.. ...+...+..+.+|||||.++ +..+...+.+....++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~-~~~-t~~~~--~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~i~v~- 75 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIP-TIGFN--VETVEYKNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVV- 75 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-CCC-CSSCC--EEEEECSSCEEEEEECCCCGG-GHHHHHHHTTTCSEEEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc-ccC-cCcee--EEEEEECCEEEEEEEcCCChh-hHHHHHHHhccCCEEEEEE-
Confidence 68999999999999999999886542 222 11211 112333445788999999643 4444444333222221111
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccch
Q psy17315 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKW 405 (561)
Q Consensus 326 ~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~ 405 (561)
++.+.+.+..+..++.. +.........|+++|+||+|. .. ...
T Consensus 76 ---------------d~~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~nK~Dl--~~--~~~ 118 (164)
T 1r8s_A 76 ---------------DSNDRERVNEAREELMR------------------MLAEDELRDAVLLVFANKQDL--PN--AMN 118 (164)
T ss_dssp ---------------ETTCGGGHHHHHHHHHH------------------HHTCGGGTTCEEEEEEECTTS--TT--CCC
T ss_pred ---------------ECCCHHHHHHHHHHHHH------------------HHhchhhcCCeEEEEEECcCC--cC--CCC
Confidence 01111111111111111 111111247899999999954 32 112
Q ss_pred HHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 406 LPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 406 ~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+++.+..... ..+.+++++||++|.|++++.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (164)
T 1r8s_A 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156 (164)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHH
Confidence 23343332211 114579999999999988775544
No 279
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.90 E-value=8.2e-10 Score=113.94 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=85.2
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcC------C-CcccCCCcccc----------------------------------
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKS------S-AAAENFPFCTI---------------------------------- 131 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~------~-~~~~~~~~~T~---------------------------------- 131 (561)
...+..++++|.||+|||||+|+|++. + ..++..|++|.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 345678999999999999999999742 2 12222232221
Q ss_pred ---cCccc----cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHH
Q psy17315 132 ---DPNEN----NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLE 204 (561)
Q Consensus 132 ---~~~~~----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~ 204 (561)
+.... ...+..+.++||||+..+.. ...+.+|++++|+|++..+. . ..+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~----------~~~~~aD~vl~Vvd~~~~~~-------~---~~l~~-- 190 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSET----------EVARMVDCFISLQIAGGGDD-------L---QGIKK-- 190 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----------HHHTTCSEEEEEECC----------------CCCCH--
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHH----------HHHHhCCEEEEEEeCCccHH-------H---HHHHH--
Confidence 00000 02245799999999864321 12478999999998753211 0 00100
Q ss_pred HHHHHhcchhhccccccCcCCCCCccHHHHHHHhhhcC------CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 205 TRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRVG------TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 205 ~~l~~~~~~v~NK~D~~~~~~~~~~~~~~l~~l~~~~~------~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.........|.||+|......... ....+...+.... ..+.+.+|+++|.|++.|+++|.+..
T Consensus 191 ~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 191 GLMEVADLIVINKDDGDNHTNVAI-ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHHHCSEEEECCCCTTCHHHHHH-HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred hhhcccCEEEEECCCCCChHHHHH-HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 011111112899999973211000 0011222111211 23568999999999999999998863
No 280
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.90 E-value=2.1e-09 Score=118.47 Aligned_cols=151 Identities=18% Similarity=0.127 Sum_probs=84.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCCc---------c------cCCCcccccCcccc--cc-----CCeEEEEeCCCcccC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSAA---------A------ENFPFCTIDPNENN--KV-----PAFLNVVDIAGLVKG 154 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~~---------~------~~~~~~T~~~~~~~--~~-----~~~i~l~DtpG~~~~ 154 (561)
.+|+++|.+++|||||+++|+..... + ....|.|....... +. ...+.||||||....
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 57999999999999999999763211 0 11245555433221 11 246889999998643
Q ss_pred CccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCCCCCccH
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~~~~~~~ 231 (561)
.. .....++.+|++++|+|++.... .. ....+...+ ....+ ++||+|+.... ..
T Consensus 85 ~~-------ev~~~l~~aD~aILVVDa~~gv~-------~q---t~~~~~~~~-~~~ipiIvViNKiDl~~a~-----~~ 141 (599)
T 3cb4_D 85 SY-------EVSRSLAACEGALLVVDAGQGVE-------AQ---TLANCYTAM-EMDLEVVPVLNKIDLPAAD-----PE 141 (599)
T ss_dssp HH-------HHHHHHHHCSEEEEEEETTTCCC-------TH---HHHHHHHHH-HTTCEEEEEEECTTSTTCC-----HH
T ss_pred HH-------HHHHHHHHCCEEEEEEECCCCCC-------HH---HHHHHHHHH-HCCCCEEEeeeccCccccc-----HH
Confidence 32 23445688999999999863210 11 111111111 22222 89999997432 12
Q ss_pred HHHHHHhhhcC--CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 232 GEKKMLLGRVG--TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 232 ~~l~~l~~~~~--~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
.....+...+. ....+.+||++|.|+..|++++.+..+.
T Consensus 142 ~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 142 RVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 22333333332 2357999999999999999999987643
No 281
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.89 E-value=3.6e-10 Score=106.14 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=38.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
..+|.+.|.+|+|||+|++.+.+..+. .+.++.+.. ...+...+..+.+|||||.+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~--~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA--TLQPTWHPT--SEELAIGNIKFTTFDLGGHI 78 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC--CCCCCCSCE--EEEEEETTEEEEEEECCCSG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--ccccCCCCC--eEEEEECCEEEEEEECCCCH
Confidence 458999999999999999999987553 233322221 12233344678899999964
No 282
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.89 E-value=6.9e-10 Score=103.27 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=84.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+ ..+.++.|.. ...+...+..+.+|||||.++ +..+...+.+....++.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~--~~~~~t~g~~--~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI--SHITPTQGFN--IKSVQSQGFKLNVWDIGGQRK-IRPYWRSYFENTDILIY 89 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC--EEEEEETTEE--EEEEEETTEEEEEEECSSCGG-GHHHHHHHHTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC--CcccCcCCeE--EEEEEECCEEEEEEECCCCHH-HHHHHHHHhCCCCEEEE
Confidence 456899999999999999999998743 3344444432 112223355788999999543 33443333333322211
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.+ .+. .......|+++|+||+|. ..
T Consensus 90 v~----------------d~~~~~s~~~~~~~~~~-----------------~~~-~~~~~~~piilv~NK~Dl--~~-- 131 (181)
T 1fzq_A 90 VI----------------DSADRKRFEETGQELTE-----------------LLE-EEKLSCVPVLIFANKQDL--LT-- 131 (181)
T ss_dssp EE----------------ETTCGGGHHHHHHHHHH-----------------HTT-CGGGTTCCEEEEEECTTS--TT--
T ss_pred EE----------------ECcCHHHHHHHHHHHHH-----------------HHh-ChhhcCCCEEEEEECcCc--cc--
Confidence 11 01111112211122111 011 111247899999999954 32
Q ss_pred cchHHHHHHHHHh---cCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDA---NDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~---~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+++.+.+.. ...+.+++++||++|.|+.++.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 132 AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence 1123344433221 0114579999999999988775443
No 283
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.88 E-value=5.1e-10 Score=104.97 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=81.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.+|.+.|.+|+||++|++.+.+..+.....+. .+. .. ..+...+ ..+.+|||||.++ +..+...+.+....+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~- 93 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT-VFD--HYAVSVTVGGKQYLLGLYDTAGQED-YDRLRPLSYPMTDVF- 93 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCCSCCCS-SCC--CEEEEEESSSCEEEEEEECCCCSSS-STTTGGGGCTTCSEE-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-ccc--eeEEEEEECCEEEEEEEEECCCCcc-hhHHHHHhcCCCCEE-
Confidence 57999999999999999999988654332222 121 11 1122222 4678999999532 211111111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
.++- ++.+.+.+..+. .|+. .+.... ...|+++|+||+|.....
T Consensus 94 -------------i~v~--d~~~~~s~~~~~~~~~~------------------~~~~~~--~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 94 -------------LICF--SVVNPASFQNVKEEWVP------------------ELKEYA--PNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp -------------EEEE--ETTCHHHHHHHHHTHHH------------------HHHHHS--TTCCEEEEEECTTSTTCH
T ss_pred -------------EEEE--ECCCHHHHHHHHHHHHH------------------HHHHhC--CCCCEEEEEEChhhcccc
Confidence 1111 112222222221 1111 122111 378999999999642110
Q ss_pred ----------hccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHH
Q psy17315 401 ----------KKNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 401 ----------~~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~ 441 (561)
......++..+++... +. +++++||++|.|++++.+...
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~ 188 (194)
T 2atx_A 139 KTLARLNDMKEKPICVEQGQKLAKEI--GACCYVECSALTQKGLKTVFDEAI 188 (194)
T ss_dssp HHHHHHTTTTCCCCCHHHHHHHHHHH--TCSCEEECCTTTCTTHHHHHHHHH
T ss_pred cchhhcccccCcccCHHHHHHHHHHc--CCcEEEEeeCCCCCCHHHHHHHHH
Confidence 0112234455555444 33 799999999999888755443
No 284
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.88 E-value=6.5e-10 Score=105.73 Aligned_cols=57 Identities=32% Similarity=0.294 Sum_probs=35.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh--hHhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~--~~el~l~Dt~Gi 302 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .+.. ....+... ...+.+|||||.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~~~i~Dt~G~ 83 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPT-VFEN-YVADIEVDGKQVELALWDTAGQ 83 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCE-EEEEEEETTEEEEEEEEECTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCc-ccce-EEEEEEECCEEEEEEEEECCCc
Confidence 357999999999999999999998654332222 1211 11112222 246889999995
No 285
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.88 E-value=5.2e-10 Score=104.17 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=81.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchh--hhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIE--IINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~--~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+. .+.. ....+. .....+.+|||||.++ +..+...+.+....++
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT-VFEN-YTASFEIDTQRIELSLWDTSGSPY-YDNVRPLSYPDSDAVL 83 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC-SEEE-EEEEEECSSCEEEEEEEEECCSGG-GTTTGGGGCTTCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-ccee-EEEEEEECCEEEEEEEEECCCChh-hhhhHHhhcCCCcEEE
Confidence 357999999999999999999998654332222 1211 011111 1224688999999532 2222111111111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
++- ++.+.+.+..+. .|+. .+.... ...|+++|+||+|.....
T Consensus 84 --------------~v~--d~~~~~s~~~~~~~~~~------------------~i~~~~--~~~piilv~nK~Dl~~~~ 127 (184)
T 1m7b_A 84 --------------ICF--DISRPETLDSVLKKWKG------------------EIQEFC--PNTKMLLVGCKSDLRTDV 127 (184)
T ss_dssp --------------EEE--ETTCHHHHHHHHHTHHH------------------HHHHHC--TTCEEEEEEECGGGGGCH
T ss_pred --------------EEE--ECCCHHHHHHHHHHHHH------------------HHHHHC--CCCCEEEEEEcchhhcch
Confidence 111 112222222221 1111 122221 378999999999642100
Q ss_pred ----------hccchHHHHHHHHHhcCCCCeEEeechh-hhhhhCCCCHHHH
Q psy17315 401 ----------KKNKWLPKIKEWVDANDPGATIIPFSGV-FEHQLVDMPDDER 441 (561)
Q Consensus 401 ----------~~~~~~~~l~~~~~~~~~~~~vi~iSA~-~~~gl~~L~~~~~ 441 (561)
......++..+++... ...+++++||+ ++.|++++.+...
T Consensus 128 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~gi~~l~~~i~ 178 (184)
T 1m7b_A 128 STLVELSNHRQTPVSYDQGANMAKQI-GAATYIECSALQSENSVRDIFHVAT 178 (184)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEECBTTTBHHHHHHHHHHHH
T ss_pred hhHhhhhhcccCCCCHHHHHHHHHHc-CCcEEEEeeecCCCcCHHHHHHHHH
Confidence 0112234455555443 13689999999 6999888755443
No 286
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.88 E-value=5.4e-10 Score=105.75 Aligned_cols=162 Identities=13% Similarity=0.153 Sum_probs=86.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.+ |. +.. ..+.. ....+.+|||||.++ +..+...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~---- 80 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GA-DFLTKEVMVDDRLVTMQIWDTAGQER-FQSLGVAFYRG---- 80 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC-SE-EEEEEEEESSSCEEEEEEEEECSSGG-GSCSCCGGGTT----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc-cc-eEEEEEEEECCEEEEEEEEeCCCcHH-HHHhHHHHHhC----
Confidence 4679999999999999999999986543332221 21 111 11222 224688999999422 11111111100
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhh---hccCCceEEEecCChhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLN---LLTAKTQIYLVNLSAKD 397 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~---~l~~kP~iiv~NK~D~d 397 (561)
+|...++-+ +.+.+.+..+..++.. +.... .....|+++|+||+|.
T Consensus 81 ----------~d~~i~v~d--~~~~~s~~~~~~~~~~------------------~~~~~~~~~~~~~piilv~nK~Dl- 129 (207)
T 1vg8_A 81 ----------ADCCVLVFD--VTAPNTFKTLDSWRDE------------------FLIQASPRDPENFPFVVLGNKIDL- 129 (207)
T ss_dssp ----------CSEEEEEEE--TTCHHHHHTHHHHHHH------------------HHHHHCCSSGGGSCEEEEEECTTS-
T ss_pred ----------CcEEEEEEE--CCCHHHHHHHHHHHHH------------------HHHhcccccCCCCcEEEEEECCCC-
Confidence 111111111 1111222222222111 11111 0136899999999954
Q ss_pred hhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 398 YIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
.. .....+.+.++.... .+.+++++||++|.|+.++.+.......+
T Consensus 130 -~~-~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 130 -EN-RQVATKRAQAWCYSK-NNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp -SC-CCSCHHHHHHHHHHT-TSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -cc-cccCHHHHHHHHHhc-CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 32 233445555555422 26789999999999999887766555443
No 287
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.88 E-value=4.6e-10 Score=105.90 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=80.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
...+|.+.|.+|+|||+|++.+.+..+.... .++.+ +... .+...+ ..+.+|||||.++ +..+...+.+....
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~-~~t~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEY-IPTAF--DNFSAVVSVDGRPVRLQLCDTAGQDE-FDKLRPLCYTNTDI 94 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSS--EEEEEEEEETTEEEEEEEEECCCSTT-CSSSGGGGGTTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCccc--ceeEEEEEECCEEEEEEEEECCCCHH-HHHHhHhhcCCCcE
Confidence 4568999999999999999999987643322 22222 1111 122222 3577999999632 21111111111111
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~ 398 (561)
+ .++- ++.+.+.+..+. .|+. .+.... ...|+++|+||+|...
T Consensus 95 ~--------------i~v~--d~~~~~s~~~~~~~~~~------------------~~~~~~--~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 95 F--------------LLCF--SVVSPSSFQNVSEKWVP------------------EIRCHC--PKAPIILVGTQSDLRE 138 (201)
T ss_dssp E--------------EEEE--ETTCHHHHHHHHHTHHH------------------HHHHHC--SSSCEEEEEECGGGGG
T ss_pred E--------------EEEE--ECCCHHHHHHHHHHHHH------------------HHHHhC--CCCCEEEEEECHhhhh
Confidence 1 1111 112222222221 1111 122111 3789999999996421
Q ss_pred hh----------hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 399 IK----------KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 399 ~~----------~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
.. ......+...++.... ...+++++||++|.|+.++.+.....+.
T Consensus 139 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 139 DVKVLIELDKCKEKPVPEEAAKLLAEEI-KAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CHHHHHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccccCCHHHHHHHHHhc-CCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 10 0112234444554443 1238999999999999888666555443
No 288
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.87 E-value=4.1e-10 Score=107.30 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=83.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+||++|++.+.+..+.... .++.+. ... .+... ...+.+|||||.++ +..+...+.+....+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~~~~-~~t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTVFD--NFSANVAVDGQIVNLGLWDTAGQED-YSRLRPLSYRGADIF 84 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCSSCC--CEEEEEECSSCEEEEEEECCCCCCC-CCC--CGGGTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccC-CCccce--eEEEEEEECCEEEEEEEEECCCcHH-HHHHHHhhccCCCEE
Confidence 367999999999999999999988654332 222221 111 12222 24688999999532 222221121111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHH-HHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIK-AFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~-~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
.++- ++.+.+.+..+. .|+. .+.... ...|+++|+||+|. .
T Consensus 85 --------------ilv~--d~~~~~s~~~~~~~~~~------------------~~~~~~--~~~piilv~nK~Dl--~ 126 (212)
T 2j0v_A 85 --------------VLAF--SLISKASYENVLKKWMP------------------ELRRFA--PNVPIVLVGTKLDL--R 126 (212)
T ss_dssp --------------EEEE--ETTCHHHHHHHHHTHHH------------------HHHHHC--TTCCEEEEEECHHH--H
T ss_pred --------------EEEE--ECCCHHHHHHHHHHHHH------------------HHHHhC--CCCCEEEEEeCHHh--h
Confidence 1111 112222222221 1111 122111 37899999999954 3
Q ss_pred hhcc--------chHHHHHHHHHhcCCC-CeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 400 KKKN--------KWLPKIKEWVDANDPG-ATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 400 ~~~~--------~~~~~l~~~~~~~~~~-~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.... ...+.+.+++... + .+++++||++|.|+.++.+.....+
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 127 DDKGYLADHTNVITSTQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp TCHHHHHTCSSCCCHHHHHHHHHHH--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hCccccccccCCCCHHHHHHHHHHc--CCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 2111 0234444554443 4 4899999999999988866554443
No 289
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.86 E-value=5.1e-10 Score=106.35 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=36.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhh--hHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEII--NEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~--~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++.+++..+.....+.+ + +... .+... ...+.+|||||.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-F--DNYSANVMVDGKPVNLGLWDTAGLE 89 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS-E--EEEEEEEECC-CEEEEEEEEECCSG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee-c--ceeEEEEEECCEEEEEEEEECCCch
Confidence 34689999999999999999999876543333221 1 1111 11222 2346699999963
No 290
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.86 E-value=3.3e-09 Score=101.37 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=53.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcc---cCCCcccccCccccccCCeEEEEeCCCcccCCccccccccccc-ccc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAA---ENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFL-SHI 169 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~---~~~~~~T~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l-~~i 169 (561)
...++|+++|.+|||||||+|+|++..... +..|.++.+. ....+.++||||...... ....++ ..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRY----KLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTH----HHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHH----HHHHHHHhcc
Confidence 345799999999999999999999876321 2334444332 234699999999854331 111121 122
Q ss_pred ccCCEEEEEeccc
Q psy17315 170 SACDAIFHLCKEK 182 (561)
Q Consensus 170 ~~~D~il~VvD~~ 182 (561)
..+|++++|+|++
T Consensus 81 ~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 81 KFVKGLIFMVDST 93 (218)
T ss_dssp GGEEEEEEEEETT
T ss_pred ccCCEEEEEEECC
Confidence 3489999999876
No 291
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.86 E-value=7.8e-12 Score=134.55 Aligned_cols=160 Identities=20% Similarity=0.254 Sum_probs=91.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH-HHHHHHHHHHhhCCcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE-KEINKIEKLVQRGDKK 319 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~-~~~~~l~~~~~~~~~~ 319 (561)
...+|.+.|.+|+|||+|+|.+++..+ ..++..+||+ |+.. .+.+.+..+.+|||||++ +..+.++ ..
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~--a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve-------~~ 312 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDR--AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE-------RL 312 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTB--CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC-------CC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCC--CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHH-------HH
Confidence 447899999999999999999999842 3344445554 5543 234455679999999974 2100000 00
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
-....+.. +..+|+++.|++.. ...+.++.+++... ..+|+++|+||+|. .
T Consensus 313 gi~~~~~~--------------~~~aD~vl~VvD~s----------~~~s~~~~~il~~l---~~~piivV~NK~DL--~ 363 (482)
T 1xzp_A 313 GIERTLQE--------------IEKADIVLFVLDAS----------SPLDEEDRKILERI---KNKRYLVVINKVDV--V 363 (482)
T ss_dssp CHHHHHHH--------------HHHCSEEEEEEETT----------SCCCHHHHHHHHHH---TTSSEEEEEEECSS--C
T ss_pred HHHHHHHH--------------hhcccEEEEEecCC----------CCCCHHHHHHHHHh---cCCCEEEEEECccc--c
Confidence 00000000 01112322222210 12233444444322 47999999999954 3
Q ss_pred hhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHH
Q psy17315 400 KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445 (561)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~ 445 (561)
. ....+++.+++. .+.+++++||++|.|+++|.+...+.+.
T Consensus 364 ~--~~~~~~~~~~~~---~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 364 E--KINEEEIKNKLG---TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp C--CCCHHHHHHHHT---CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred c--ccCHHHHHHHhc---CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 2 112344555432 1357999999999999999777666543
No 292
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.86 E-value=1.2e-09 Score=112.66 Aligned_cols=125 Identities=19% Similarity=0.091 Sum_probs=79.1
Q ss_pred EEeccCCCCCCCCccccCCCcccchhhh-hcCCCCc-----cCCCChHH---HHHHHHHHHhcCCCc--cccccccCCCC
Q psy17315 12 LIEATVPRDGLSFYESTNPKIPRSNQIL-ISDKPTW-----GDGDGPKA---PKRRKQHLSDKLRPK--ADSKKKMGPKK 80 (561)
Q Consensus 12 v~DAR~P~~~~~~~~s~n~~l~~~~~~~-~~~k~~l-----~DL~~~~~---~~~w~~~l~~~~~~~--~~~~~~~~~~~ 80 (561)
++|||.| ..+.| .|+++.... ..++|.+ +||++++. ++.|+.+|++.|..+ +++..+.+...
T Consensus 136 iv~a~~P------~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~ 208 (358)
T 2rcn_A 136 IVSAILP------ELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKP 208 (358)
T ss_dssp EEEESTT------TCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHH
T ss_pred EEEeCCC------CCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHH
Confidence 6799999 88888 577622111 1344444 99999876 778999999888776 55555544332
Q ss_pred chhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCC---c----ccccCccccccCCeEEEEeCCCc
Q psy17315 81 TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFP---F----CTIDPNENNKVPAFLNVVDIAGL 151 (561)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~---~----~T~~~~~~~~~~~~i~l~DtpG~ 151 (561)
... . ..+-.++++|.+|||||||+|+|.|... .++... | +|+.... ...+....++||||+
T Consensus 209 L~~----~-----~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i-~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 209 LEE----A-----LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL-YHFPHGGDVIDSPGV 278 (358)
T ss_dssp HHH----H-----HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE-EECTTSCEEEECHHH
T ss_pred HHH----h-----cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE-EEECCCCEecCcccH
Confidence 111 1 1345799999999999999999998653 233222 3 2332221 223444678999998
Q ss_pred cc
Q psy17315 152 VK 153 (561)
Q Consensus 152 ~~ 153 (561)
..
T Consensus 279 ~e 280 (358)
T 2rcn_A 279 RE 280 (358)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 293
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.86 E-value=2.1e-09 Score=124.12 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=91.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC---C-------------cccCCCcccccCccccc--cCCeEEEEeCCCcccCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS---A-------------AAENFPFCTIDPNENNK--VPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~---~-------------~~~~~~~~T~~~~~~~~--~~~~i~l~DtpG~~~~~ 155 (561)
...++|+++|.+|+|||||+|+|++.. . ......|+|.+...... ....+.++||||.....
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 345799999999999999999998741 0 11134677766533211 23579999999985322
Q ss_pred ccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch----hhccccccCcCCCCCccH
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS----VDAKADSKKKMGPKKTDE 231 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----v~NK~D~~~~~~~~~~~~ 231 (561)
......++.+|++++|+|++.... ....+.+. .+.....+ ++||+|+......-....
T Consensus 374 -------~~mi~gas~AD~aILVVDAtdGv~-------~QTrEhL~----ll~~lgIP~IIVVINKiDLv~d~e~le~i~ 435 (1289)
T 3avx_A 374 -------KNMITGAAQMDGAILVVAATDGPM-------PQTREHIL----LGRQVGVPYIIVFLNKCDMVDDEELLELVE 435 (1289)
T ss_dssp -------HHHHHTSCCCSEEEEEEETTTCSC-------TTHHHHHH----HHHHHTCSCEEEEEECCTTCCCHHHHHHHH
T ss_pred -------HHHHHHHhhCCEEEEEEcCCccCc-------HHHHHHHH----HHHHcCCCeEEEEEeecccccchhhHHHHH
Confidence 223455789999999999864211 11111221 22222222 799999974110000011
Q ss_pred HHHHHHhhhcC----CCcEEEEEccCC--------CCHHHHHHHHHhhc
Q psy17315 232 GEKKMLLGRVG----TNLKVGIVGVPN--------VGKSTFFNVLTKRA 268 (561)
Q Consensus 232 ~~l~~l~~~~~----~~~~i~isg~~~--------~Gks~l~~~l~~~~ 268 (561)
.++..+..... ..+.+.+||++| .|+.+|++.|.+..
T Consensus 436 eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 436 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 22333333332 357899999999 57889999998754
No 294
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.85 E-value=7.7e-10 Score=105.46 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=83.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh--hhHhhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI--INEELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~--~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
...+|.+.|.+|+||++|++.+.+..+.....+. .+.. ....+.. ....+.+|||+|.++ +..+...+.+....+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT-VFEN-YTASFEIDTQRIELSLWDTSGSPY-YDNVRPLSYPDSDAV 103 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC-SEEE-EEEEEESSSSEEEEEEEEECCSGG-GTTTGGGGCTTCSEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCc-ccee-EEEEEEECCEEEEEEEEeCCCcHh-hhHHHHhhccCCCEE
Confidence 3468999999999999999999998664332222 1111 1111211 224688999999532 222221111111111
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHH-HHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKI-KAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v-~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
+ ++- ++.+.+.+..+ ..|+. .+.... ...|+++|+||+|....
T Consensus 104 i--------------lv~--D~~~~~s~~~~~~~~~~------------------~i~~~~--~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 104 L--------------ICF--DISRPETLDSVLKKWKG------------------EIQEFC--PNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp E--------------EEE--ETTCHHHHHHHHHTHHH------------------HHHHHC--TTCEEEEEEECGGGGGC
T ss_pred E--------------EEE--ECCCHHHHHHHHHHHHH------------------HHHHHC--CCCCEEEEEechhhccc
Confidence 1 111 11222222222 11111 122211 37899999999964210
Q ss_pred h----------hccchHHHHHHHHHhcCCCCeEEeechh-hhhhhCCCCHHHHH
Q psy17315 400 K----------KKNKWLPKIKEWVDANDPGATIIPFSGV-FEHQLVDMPDDERQ 442 (561)
Q Consensus 400 ~----------~~~~~~~~l~~~~~~~~~~~~vi~iSA~-~~~gl~~L~~~~~~ 442 (561)
. ......++..++++.. ...+++++||+ ++.|++++.+...+
T Consensus 148 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 148 VSTLVELSNHRQTPVSYDQGANMAKQI-GAATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCCCCHHHHHHHHHHc-CCCEEEEeeeccCCcCHHHHHHHHHH
Confidence 0 0112234455555443 13689999999 68998887555443
No 295
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.85 E-value=8.8e-09 Score=112.16 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCCc----------------c------cCCCcccccCccc--cccCCeEEEEeCCCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSAA----------------A------ENFPFCTIDPNEN--NKVPAFLNVVDIAGL 151 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~~----------------~------~~~~~~T~~~~~~--~~~~~~i~l~DtpG~ 151 (561)
..+|+++|.+|+|||||+|+|++.... + ....|+|...... ...+..+.|+||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 468999999999999999999864211 0 0133444433221 123457999999998
Q ss_pred ccCCccccccccccccccccCCEEEEEecccc
Q psy17315 152 VKGAAEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 152 ~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
.... ......++.+|++++|+|++.
T Consensus 93 ~df~-------~~~~~~l~~aD~~IlVvDa~~ 117 (529)
T 2h5e_A 93 EDFS-------EDTYRTLTAVDCCLMVIDAAK 117 (529)
T ss_dssp TTCC-------HHHHHGGGGCSEEEEEEETTT
T ss_pred hhHH-------HHHHHHHHHCCEEEEEEeCCc
Confidence 5433 233456789999999999863
No 296
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.83 E-value=4.6e-10 Score=102.51 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=38.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++.+.+..+.. ..++.|.. ...+.+....+.+|||||.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT--TIPTIGFN--VETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC--CCCCSSEE--EEEEEETTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC--cCCcCccc--eEEEEECCEEEEEEECCCCh
Confidence 34689999999999999999998875532 22222221 11223335678899999953
No 297
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.83 E-value=4.9e-10 Score=104.05 Aligned_cols=57 Identities=28% Similarity=0.332 Sum_probs=40.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++.+.+..+ ..+.++.|.. ...+...+..+.+|||||.+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSN--VEEIVINNTRFLMWDIGGQE 76 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--EEEECCSSSS--CEEEEETTEEEEEEEESSSG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CccCCcCcee--eEEEEECCEEEEEEECCCCH
Confidence 346899999999999999999998865 3333333432 12233345678999999963
No 298
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.83 E-value=3.2e-10 Score=109.72 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=84.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHH-----H----HHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEK-----E----INKIEK 311 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~-----~----~~~l~~ 311 (561)
...+|.+.|.+|+|||+|++.+++..+....+ ++++ +... .+...+..+.+|||||..+ . ...+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSY---SFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC--------CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCC---CCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 45789999999999999999999886542222 2332 1111 1222345688999999721 0 011111
Q ss_pred HHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCC-HHHHHHHHhhhhc-cCCceEE
Q psy17315 312 LVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWS-NADIEHLNKLNLL-TAKTQIY 389 (561)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~-~~e~~~l~~~~~l-~~kP~ii 389 (561)
. .... ++++.|.+. .. ...+. ..+..++..+... ..+|+++
T Consensus 105 ~-~~~~----------------------------d~~i~v~d~------~~--~~s~~~~~~~~~~~~l~~~~~~~piil 147 (228)
T 2qu8_A 105 L-AHIN----------------------------GVILFIIDI------SE--QCGLTIKEQINLFYSIKSVFSNKSIVI 147 (228)
T ss_dssp H-HTSS----------------------------EEEEEEEET------TC--TTSSCHHHHHHHHHHHHTCC-CCCEEE
T ss_pred h-hccc----------------------------cEEEEEEec------cc--ccCcchHHHHHHHHHHHHhhcCCcEEE
Confidence 0 0000 111111110 00 00111 1222333333221 3789999
Q ss_pred EecCChhhhhhhccc---hHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHH
Q psy17315 390 LVNLSAKDYIKKKNK---WLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446 (561)
Q Consensus 390 v~NK~D~d~~~~~~~---~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~ 446 (561)
|+||+|. ...... ..+.+.+++....+..+++++||++|.|+.++.+.....+.+
T Consensus 148 v~nK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 148 GFNKIDK--CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EEECGGG--CC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeCccc--CCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 9999954 321111 112344444443112789999999999999987766655443
No 299
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.82 E-value=6.2e-09 Score=117.09 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC---C---c------ccC------CCcccccCccc--cccCCeEEEEeCCCcccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS---A---A------AEN------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~---~---~------~~~------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~ 155 (561)
..+|+++|.+|+|||||+|+|++.. . . +.+ .+|+|...... .+.+..+.||||||.....
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 89 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT 89 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH
Confidence 4689999999999999999998421 1 1 111 34566554332 1234579999999986433
Q ss_pred ccccccccccccccccCCEEEEEecccc
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
......++.+|++++|+|++.
T Consensus 90 -------~~~~~~l~~aD~~llVvDa~~ 110 (693)
T 2xex_A 90 -------VEVERSLRVLDGAVTVLDAQS 110 (693)
T ss_dssp -------HHHHHHHHHCSEEEEEEETTT
T ss_pred -------HHHHHHHHHCCEEEEEECCCC
Confidence 234556788999999999863
No 300
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.81 E-value=9.2e-10 Score=109.03 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=83.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHH-----HHHHHHHhhCC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEI-----NKIEKLVQRGD 317 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~-----~~l~~~~~~~~ 317 (561)
.+|.+.|.+|+|||+|+|.+++..+..+++ +|++ +... .+...+..+.+|||||..... +.+...+....
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~---pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANW---PGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEEC---TTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCC---CCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 579999999999999999999976554433 3443 3222 123334578999999964210 01111111000
Q ss_pred ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKD 397 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d 397 (561)
.+ +++..|++ . ...+....++..+.. .+.|+++|+||+|..
T Consensus 83 ------------~~--------------d~ii~V~D------~------t~~~~~~~~~~~l~~-~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 83 ------------DA--------------DLVILVAD------S------VNPEQSLYLLLEILE-MEKKVILAMTAIDEA 123 (258)
T ss_dssp ------------CC--------------SEEEEEEE------T------TSCHHHHHHHHHHHT-TTCCEEEEEECHHHH
T ss_pred ------------CC--------------CEEEEEeC------C------CchhhHHHHHHHHHh-cCCCEEEEEECcCCC
Confidence 00 11110000 0 001122222222222 479999999999653
Q ss_pred hhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 398 YIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.........+.+.+. . +.+++++||++|.|+.+|.+...+.
T Consensus 124 ~~~~i~~~~~~l~~~---l--g~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 124 KKTGMKIDRYELQKH---L--GIPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp HHTTCCBCHHHHHHH---H--CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHH---c--CCCEEEEEeeCCcCHHHHHHHHHHH
Confidence 221111223444333 2 6789999999999999987765543
No 301
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.81 E-value=6.5e-10 Score=102.90 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=79.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+ ..+.++.|.. ...+...+..+.+|||||.++ +..+...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~------ 85 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV--VTTKPTIGFN--VETLSYKNLKLNVWDLGGQTS-IRPYWRCYYAD------ 85 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE--EEECSSTTCC--EEEEEETTEEEEEEEEC-----CCTTGGGTTTT------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc--CccCCcCccc--eEEEEECCEEEEEEECCCCHh-HHHHHHHHhcc------
Confidence 457899999999999999999987654 2222222321 122333346788999999643 11111111100
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
+|...++-+. .+.+.+..+..++.. +........+|+++|+||+|. ..
T Consensus 86 --------~d~ii~v~d~--~~~~s~~~~~~~~~~------------------~~~~~~~~~~piilv~nK~Dl--~~-- 133 (183)
T 1moz_A 86 --------TAAVIFVVDS--TDKDRMSTASKELHL------------------MLQEEELQDAALLVFANKQDQ--PG-- 133 (183)
T ss_dssp --------EEEEEEEEET--TCTTTHHHHHHHHHH------------------HTTSSTTSSCEEEEEEECTTS--TT--
T ss_pred --------CCEEEEEEEC--CCHHHHHHHHHHHHH------------------HHcChhhCCCeEEEEEECCCC--CC--
Confidence 1111111110 000111111111111 111111247899999999954 32
Q ss_pred cchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 403 NKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
....+++.+.+... ..+.+++++||++|.|++++.+...+.
T Consensus 134 ~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (183)
T 1moz_A 134 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 177 (183)
T ss_dssp CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 12234444443221 113579999999999998886655443
No 302
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.81 E-value=1.2e-09 Score=102.77 Aligned_cols=155 Identities=13% Similarity=0.060 Sum_probs=78.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...+|.+.|.+|+|||+|++.+.+..+.. ..++.+.. ...+...+..+.+|||||.++ +..+...+.+....++.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFN--VETVEYKNICFTVWDVGGQDK-IRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE--EEEETTEE--EEEEEETTEEEEEEECC------CTTHHHHHHTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc--cCCcCcee--EEEEEECCEEEEEEECCCCHh-HHHHHHHHhccCCEEEE
Confidence 34689999999999999999998775431 11111211 112333445788999999643 33333222222222111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ ++.+.+.+..+..++.. +.........|+++|+||+|. ..
T Consensus 103 v~----------------D~~~~~s~~~~~~~l~~------------------~~~~~~~~~~piilv~NK~Dl--~~-- 144 (192)
T 2b6h_A 103 VV----------------DSNDRERVQESADELQK------------------MLQEDELRDAVLLVFANKQDM--PN-- 144 (192)
T ss_dssp EE----------------ETTCGGGHHHHHHHHHH------------------HHTCGGGTTCEEEEEEECTTS--TT--
T ss_pred EE----------------ECCCHHHHHHHHHHHHH------------------HhcccccCCCeEEEEEECCCC--CC--
Confidence 11 01111111111111111 111111247899999999954 32
Q ss_pred cchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 403 NKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
....+++.+.+... ..+.+++++||++|.|++++.+..
T Consensus 145 ~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 145 AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 185 (192)
T ss_dssp CCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHH
Confidence 12233443332211 114579999999999988775443
No 303
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.80 E-value=1.6e-11 Score=113.73 Aligned_cols=58 Identities=34% Similarity=0.505 Sum_probs=39.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
..++.+.|.+|+|||+|++.+++..+. .++..++++ +... .+...+..+.+|||||++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 63 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAA--IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS--CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc--eeeCCCCceeceeeEEEEECCeEEEEEECCCcc
Confidence 467999999999999999999987432 223333443 3322 233334468899999974
No 304
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.80 E-value=1.7e-09 Score=111.45 Aligned_cols=59 Identities=25% Similarity=0.391 Sum_probs=42.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhh-HhhhcccHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIIN-EELRLKDVEHIEK 304 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~-~el~l~Dt~Gi~~ 304 (561)
-+.|.++|.+|+|||||++++++..+..+.++++ |.+|... +.+.+ ..+.+|||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ft--Tl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFT--TLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSS--CCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCcc--ccCceEEEEEeCCCceEEEecCCCCcc
Confidence 4579999999999999999999986655555542 3344432 22332 5689999999754
No 305
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.78 E-value=1.1e-09 Score=100.70 Aligned_cols=153 Identities=11% Similarity=0.109 Sum_probs=84.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+.++ .+.. ..+...+..+.+|||||.++ +. ...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~-~~-----------~~~ 72 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGIT--QHIGAYQVTVNDKKITFLDTPGHEA-FT-----------TMR 72 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSS--TTCCCCEEEETTEEEEESCCCSSSS-SS-----------CSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCcee--EeeeEEEEEeCCceEEEEECCCCHH-HH-----------HHH
Confidence 457899999999999999999999876554443321 1111 12333445688999999421 10 000
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ +..++++..|.+. . ........+.+..... ...|+++|+||+|. ...
T Consensus 73 ~~~-----------------~~~~d~~i~v~d~------~----~~~~~~~~~~l~~~~~-~~~p~ilv~nK~Dl--~~~ 122 (178)
T 2lkc_A 73 ARG-----------------AQVTDIVILVVAA------D----DGVMPQTVEAINHAKA-ANVPIIVAINKMDK--PEA 122 (178)
T ss_dssp CSS-----------------CCCCCEEEEEEET------T----CCCCHHHHHHHHHHGG-GSCCEEEEEETTTS--SCS
T ss_pred HHH-----------------HhhCCEEEEEEEC------C----CCCcHHHHHHHHHHHh-CCCCEEEEEECccC--CcC
Confidence 011 1111222212110 0 0122334444444333 47899999999954 321
Q ss_pred ccchHHHHHHHHHhcC-------CCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 402 KNKWLPKIKEWVDAND-------PGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~-------~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
..+++.+.+.... ...+++++||++|.|++++.+....
T Consensus 123 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 123 ---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp ---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHH
Confidence 1122333222210 0147999999999999888655443
No 306
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.76 E-value=7e-10 Score=106.57 Aligned_cols=154 Identities=12% Similarity=0.032 Sum_probs=80.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+....+. ..+.++.|++ .... .+......+.+|||+|.+. +..+...+.+....++
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK-FGGLRDGYYIQAQCAI 92 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHT-CEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG-TSCCCHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH-HhHHHHHHHhcCCEEE
Confidence 467999999999999999995554433 3333444432 2221 1222334688999999532 2222222222111111
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..+ .+.+...+..+..|+.. +.... ...|+++|+||+|. ...
T Consensus 93 ~v~----------------d~~~~~s~~~~~~~~~~------------------~~~~~--~~~p~ilv~nK~Dl--~~~ 134 (221)
T 3gj0_A 93 IMF----------------DVTSRVTYKNVPNWHRD------------------LVRVC--ENIPIVLCGNKVDI--KDR 134 (221)
T ss_dssp EEE----------------ETTCHHHHHTHHHHHHH------------------HHHHS--TTCCEEEEEECTTS--SSC
T ss_pred EEE----------------ECCCHHHHHHHHHHHHH------------------HHHhC--CCCCEEEEEECCcc--ccc
Confidence 111 11222222222222221 21111 37899999999954 221
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.. .....+++... +.+++++||++|.|+.++.+...
T Consensus 135 ~~--~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 135 KV--KAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp SS--CGGGCCHHHHH--TCEEEECBGGGTBTTTHHHHHHH
T ss_pred cc--cHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 11122222332 57899999999999988754443
No 307
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.76 E-value=1.3e-08 Score=114.33 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC------Cccc------C------CCcccccCccc--cccCCeEEEEeCCCcccCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS------AAAE------N------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~------~~~~------~------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~ 155 (561)
..+|+++|.+|+|||||+|+|+... ..+. + ..+.|...... .+....+.||||||.....
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 91 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT 91 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH
Confidence 3689999999999999999998321 0111 1 33555443322 1234579999999985422
Q ss_pred ccccccccccccccccCCEEEEEecccc
Q psy17315 156 AEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 156 ~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
......++.+|++++|+|++.
T Consensus 92 -------~~~~~~l~~aD~~ilVvDa~~ 112 (691)
T 1dar_A 92 -------IEVERSMRVLDGAIVVFDSSQ 112 (691)
T ss_dssp -------HHHHHHHHHCSEEEEEEETTT
T ss_pred -------HHHHHHHHHCCEEEEEEECCC
Confidence 234556788999999999863
No 308
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.75 E-value=1.4e-10 Score=115.60 Aligned_cols=153 Identities=20% Similarity=0.143 Sum_probs=83.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHHHHHH-----HHHHHHhhCC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIEKEIN-----KIEKLVQRGD 317 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~~~~~-----~l~~~~~~~~ 317 (561)
.+|.+.|.+|+|||+|+|.+++..+..+.+ +|++ +... .+.+.+..+.+|||||+..... .+...+....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNW---PGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEEC---TTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCC---CCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 579999999999999999999986533333 3332 3222 2333445689999999642100 0111111000
Q ss_pred ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccC-CceEEEecCChh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTA-KTQIYLVNLSAK 396 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~-kP~iiv~NK~D~ 396 (561)
.++++..|++. . . .+.....+..... .. +|+++|+||+|.
T Consensus 81 --------------------------~~d~vi~v~D~------~-----~-~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl 121 (271)
T 3k53_A 81 --------------------------NADVIVDIVDS------T-----C-LMRNLFLTLELFE-MEVKNIILVLNKFDL 121 (271)
T ss_dssp --------------------------CCSEEEEEEEG------G-----G-HHHHHHHHHHHHH-TTCCSEEEEEECHHH
T ss_pred --------------------------CCcEEEEEecC------C-----c-chhhHHHHHHHHh-cCCCCEEEEEEChhc
Confidence 00111100000 0 0 0111222222222 24 999999999964
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 397 DYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 397 d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
..........+.+.+.+ +.+++++||++|.|+.++.+.....+
T Consensus 122 ~~~~~~~~~~~~l~~~l-----g~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 122 LKKKGAKIDIKKMRKEL-----GVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp HHHHTCCCCHHHHHHHH-----SSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHc-----CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 32221222344444433 67899999999999998876655443
No 309
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.72 E-value=5.1e-09 Score=106.62 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=82.4
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhh--HhhhcccHHHHHHHHHHHHHHHhhCC
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIIN--EELRLKDVEHIEKEINKIEKLVQRGD 317 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~ 317 (561)
.....+|.+.|.+|+|||+|++.+.+..+.....+. .+ +... .+...+ ..+.+|||||.++ +..+...+.+..
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t-~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~ 227 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-VF--DNYSANVMVDGKPVNLGLWDTAGLED-YDRLRPLSYPQT 227 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCC-SE--EEEEEEEEETTEEEEEEEEEECCCGG-GTTTGGGGCTTC
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCc-cc--ceeEEEEEECCEEEEEEEEeCCCchh-hhHHHHHhccCC
Confidence 345678999999999999999999987654332221 11 1111 122222 3466999999533 221111111111
Q ss_pred ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKD 397 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d 397 (561)
..+ .++- ++.+...+..+.. .| ...+.... ..+|+++|+||+|..
T Consensus 228 d~~--------------i~v~--d~~~~~s~~~~~~-------------~~----~~~~~~~~--~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 228 DVF--------------LICF--SLVSPASFHHVRA-------------KW----YPEVRHHC--PNTPIILVGTKLDLR 272 (332)
T ss_dssp SEE--------------EEEE--ETTCHHHHHHHHH-------------TH----HHHHHHHC--TTSCEEEEEECHHHH
T ss_pred CEE--------------EEEE--eCCCHHHHHHHHH-------------HH----HHHHHhhC--CCCcEEEEEEchhcc
Confidence 111 1111 1111122221110 00 11122211 378999999999542
Q ss_pred hhhh----------ccchHHHHHHHHHhcCCCC-eEEeechhhhhhhCCCCHHHH
Q psy17315 398 YIKK----------KNKWLPKIKEWVDANDPGA-TIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 398 ~~~~----------~~~~~~~l~~~~~~~~~~~-~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.... .....+...+++... +. +++++||++|.|+.++.+...
T Consensus 273 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 325 (332)
T 2wkq_A 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEI--GAVKYLECSALTQRGLKTVFDEAI 325 (332)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHHT--TCSEEEECCTTTCTTHHHHHHHHH
T ss_pred cccchhhhccccccccccHHHHHHHHHHc--CCcEEEEecCCCCcCHHHHHHHHH
Confidence 1100 112233444555544 43 899999999999988755443
No 310
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.72 E-value=4.9e-09 Score=97.48 Aligned_cols=56 Identities=30% Similarity=0.480 Sum_probs=38.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
.++.+.|.+|+|||+|++.+++..+....+ +++ .++.. .+...+..+.+|||||..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNW---PGVTVEKKEGEFEYNGEKFKVVDLPGVY 65 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEEC---TTSCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCC---CCeeccceEEEEEeCCcEEEEEECCCcC
Confidence 579999999999999999999865433222 333 23322 233345678899999964
No 311
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.71 E-value=2.1e-08 Score=98.70 Aligned_cols=165 Identities=10% Similarity=-0.013 Sum_probs=87.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh-----cCC-CcccCCCccc----------------ccCcc---c-------------
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT-----KSS-AAAENFPFCT----------------IDPNE---N------------- 136 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~-----~~~-~~~~~~~~~T----------------~~~~~---~------------- 136 (561)
+...+.++|.+||||||+++.|. |.+ .-+..-|+.+ .+... +
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 34678899999999999999998 655 2233223211 10000 0
Q ss_pred ------------cccCCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHH
Q psy17315 137 ------------NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLE 204 (561)
Q Consensus 137 ------------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~ 204 (561)
......+.++||||....... ..+...+...+.+ +++++|+|+.... .............
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~~~~------~~~~~~~~~~~~~ 164 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPEILK------KPNDYCFVRFFAL 164 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGGGCC------SHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchhhhc------CHHHHHHHHHHHH
Confidence 001236999999998754321 1112223344566 8999999875211 0111111111111
Q ss_pred HHHHHhcch---hhccccccCcCCCCCccHHHH-------HHH-----------------hhhcCC-CcEEEEEccCCCC
Q psy17315 205 TRIRDLRRS---VDAKADSKKKMGPKKTDEGEK-------KML-----------------LGRVGT-NLKVGIVGVPNVG 256 (561)
Q Consensus 205 ~~l~~~~~~---v~NK~D~~~~~~~~~~~~~~l-------~~l-----------------~~~~~~-~~~i~isg~~~~G 256 (561)
........+ |.||+|......... ....+ ..+ ...... ...+.+|+++|.|
T Consensus 165 ~~~~~~~~p~~iv~NK~D~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~g 243 (262)
T 1yrb_A 165 LIDLRLGATTIPALNKVDLLSEEEKER-HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG 243 (262)
T ss_dssp HHHHHHTSCEEEEECCGGGCCHHHHHH-HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred HHhcccCCCeEEEEecccccccccHHH-HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCccc
Confidence 111122222 899999974321100 00000 011 112222 3679999999999
Q ss_pred HHHHHHHHHhhc
Q psy17315 257 KSTFFNVLTKRA 268 (561)
Q Consensus 257 ks~l~~~l~~~~ 268 (561)
++.|++++.+..
T Consensus 244 i~~l~~~i~~~~ 255 (262)
T 1yrb_A 244 FEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 312
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.71 E-value=1.4e-08 Score=96.73 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=41.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhh---hHhhhcccHHHHHHHHHHHHHHHh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII---NEELRLKDVEHIEKEINKIEKLVQ 314 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~---~~el~l~Dt~Gi~~~~~~l~~~~~ 314 (561)
..+|.+.|.+|+|||+|++++++..+... ++++ +.....+.+. ...+.+|||||.++....+...+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 76 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSI---TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFK 76 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCB-CCCC---SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCc---ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHH
Confidence 46899999999999999999998764332 2221 1111112222 345889999996543332444443
No 313
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.71 E-value=3.1e-09 Score=114.27 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=75.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCc-------------------------------ccCCCcccccCcccc--ccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAA-------------------------------AENFPFCTIDPNENN--KVP 140 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~-------------------------------~~~~~~~T~~~~~~~--~~~ 140 (561)
...++|+++|.+|+|||||+|+|+..... .....|.|.+..... ...
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 34579999999999999999999742100 011346666654321 123
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccch--hhhccchhhHhhhHHHHHHHHHHhcch----h
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNI--FFISLNTITIWRNLKLLETRIRDLRRS----V 214 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~----v 214 (561)
..+.+|||||..... ......++.+|++++|+|++.... .+... ....+.+. .+..+..+ +
T Consensus 121 ~~~~iiDtPGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~--~qt~e~l~----~~~~~~vp~iivv 187 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYV-------TNMINGASQADIGVLVISARRGEFEAGFERG--GQTREHAV----LARTQGINHLVVV 187 (467)
T ss_dssp EEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTT--CCHHHHHH----HHHHTTCSSEEEE
T ss_pred eEEEEEECCCcHHHH-------HHHHhhcccCCEEEEEEeCCcCccccccCCC--CcHHHHHH----HHHHcCCCEEEEE
Confidence 578999999985432 223455688999999999864210 00000 00111111 11222221 7
Q ss_pred hccccccCcCCCCC---ccHHHHHHHhhhc-C-----CCcEEEEEccCCCCHHHH
Q psy17315 215 DAKADSKKKMGPKK---TDEGEKKMLLGRV-G-----TNLKVGIVGVPNVGKSTF 260 (561)
Q Consensus 215 ~NK~D~~~~~~~~~---~~~~~l~~l~~~~-~-----~~~~i~isg~~~~Gks~l 260 (561)
+||+|+........ ....++..+.... . ..+.+.+||++|.|+..+
T Consensus 188 iNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 188 INKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp EECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred EECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 99999963211000 0111233333222 1 345799999999997543
No 314
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.71 E-value=1.8e-08 Score=96.55 Aligned_cols=148 Identities=11% Similarity=-0.006 Sum_probs=83.0
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC------CcccCCCcccccCcc-------------c---------------cccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS------AAAENFPFCTIDPNE-------------N---------------NKVP 140 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~------~~~~~~~~~T~~~~~-------------~---------------~~~~ 140 (561)
....++++|.+|||||||+|+|++.. +.+...|++|.+... + ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34689999999999999999998641 223333443321100 0 0112
Q ss_pred CeEEEEeCCCcc-cCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchhhcccc
Q psy17315 141 AFLNVVDIAGLV-KGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAKAD 219 (561)
Q Consensus 141 ~~i~l~DtpG~~-~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D 219 (561)
..+.++||||.. .+. ... ..++.+++|+|++... ................++||+|
T Consensus 109 ~d~iiidt~G~~~~~~---------~~~--~~~~~~i~vvd~~~~~------------~~~~~~~~~~~~~~iiv~NK~D 165 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---------DFD--LGENYRVVMVSVTEGD------------DVVEKHPEIFRVADLIVINKVA 165 (221)
T ss_dssp CSEEEEEEEEBSSGGG---------GCC--CSCSEEEEEEEGGGCT------------THHHHCHHHHHTCSEEEEECGG
T ss_pred CCEEEEeCCCCCCCCc---------hhc--cccCcEEEEEeCCCcc------------hhhhhhhhhhhcCCEEEEeccc
Confidence 357788888852 111 011 2357788999875321 0000001111111112899999
Q ss_pred ccCcCCCCCccHHHHHH-HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 220 SKKKMGPKKTDEGEKKM-LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 220 ~~~~~~~~~~~~~~l~~-l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+.+.... ....+.. +.......+.+.+|+.+|.|+..++++|.+..
T Consensus 166 l~~~~~~---~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 166 LAEAVGA---DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp GHHHHTC---CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCcchhh---HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 9743211 1222222 22222345789999999999999999998764
No 315
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.70 E-value=2.2e-11 Score=115.24 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=73.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
..+|.+.|.+|+|||+|++.+.+..+.....+.++-+. ....+...+ ..+.+|||||.++ +.. ..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~-~~~-----------~~ 99 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER-FRT-----------IT 99 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSE-EEEEEEETTEEEEEEEECCTTCTT-CCC-----------CS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceE-EEEEEEECCEEEEEEEEECCCcHh-HHH-----------HH
Confidence 36899999999999999999988755443333221111 111222222 4688999999421 111 00
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
..++. .+|...++- ++.+.+.+..+..++.. +..... ...|+++|+||+|. ...
T Consensus 100 ~~~~~---~~d~~i~v~--d~~~~~s~~~~~~~~~~------------------i~~~~~-~~~p~ilv~nK~Dl--~~~ 153 (199)
T 3l0i_B 100 SSYYR---GAHGIIVVY--DVTDQESFNNVKQWLQE------------------IDRYAS-ENVNKLLVGNKCDL--TTK 153 (199)
T ss_dssp CC--C---CCSEEEECC---CCCSHHHHHHHHHHHH------------------HHSCC--CCSEEEEC-CCSSC--C--
T ss_pred HHHhh---cCCEEEEEE--ECCCHHHHHHHHHHHHH------------------HHHhcc-CCCCEEEEEECccC--Ccc
Confidence 11100 011111111 11112222222222211 211111 36899999999964 221
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.....+...++.... +.+++++||+++.|+.++.+.
T Consensus 154 ~~v~~~~~~~~~~~~--~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 154 KVVDYTTAKEFADSL--GIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp CCCCSCC-CHHHHTT--TCCBCCCCC---HHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHH
Confidence 111112233344433 678999999999998776433
No 316
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.67 E-value=4.3e-09 Score=114.00 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=82.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
...++.+.|.+|+|||+|++.+++..+.. ..+ +.+.. ...+...+..+.+|||+|.++ +..+...+.+...-+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~-T~~~~--~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ad~~-- 393 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIP-TVGFN--VETVTYKNVKFNVWDVGGQDK-IRPLWRHYYTGTQGL-- 393 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCC-CSSEE--EEEEESSSCEEEEEEECCCGG-GSGGGGGGGTTCCEE--
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCC-cccee--EEEEEeCCEEEEEEECCCcHH-HHHHHHHHhccCCEE--
Confidence 34689999999999999999999886322 222 22221 112333456789999999532 222222222111111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.++-+ +.+.+.+..+..++.+ ++. .....++|+|+|+||+|. ..
T Consensus 394 ------------i~V~D--~~~~~s~~~~~~~~~~-----------------~~~-~~~~~~~p~ilv~NK~Dl--~~-- 437 (497)
T 3lvq_E 394 ------------IFVVD--CADRDRIDEARQELHR-----------------IIN-DREMRDAIILIFANKQDL--PD-- 437 (497)
T ss_dssp ------------EEEEE--TTCGGGHHHHHHHHHH-----------------HHT-SGGGTTCEEEEEEECCSS--SS--
T ss_pred ------------EEEEE--CcchhHHHHHHHHHHH-----------------Hhh-hhhcCCCcEEEEEECCCC--Cc--
Confidence 11111 0111111111111111 111 111247999999999954 22
Q ss_pred cchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 403 NKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
....+++.+.+... ..+.+++++||++|.|++++.+...+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 438 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 480 (497)
T ss_dssp CCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 12233444433211 12457999999999999888655544
No 317
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.66 E-value=4.6e-10 Score=104.81 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=37.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
...+|.+.|.+|+|||+|++.+.+..+.. ..++.|.. ...+...+..+.+|||||.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~--~~~~~~~~~~~~~~Dt~G~ 76 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVPTVGVN--LETLQYKNISFEVWDLGGQ 76 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECSSTTCC--EEEEEETTEEEEEEEECCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--cCCCCceE--EEEEEECCEEEEEEECCCC
Confidence 45789999999999999999998764321 11211211 1123333567889999995
No 318
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.65 E-value=4.9e-08 Score=99.17 Aligned_cols=154 Identities=12% Similarity=0.018 Sum_probs=84.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCCC-cccCCCcccccCccc-cccCCeEEEEeCCCcccCCccccccccccccccccCCEE
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSSA-AAENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~~-~~~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~i 175 (561)
||.++|..|||||||++.+.+... ......+.|...... ......+++|||||....... .+ ......++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~--~l--~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEP--SY--DSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCC--SH--HHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccch--hh--hhhhhccCCCEE
Confidence 589999999999999999876541 111122333332221 112356999999998654310 00 012346899999
Q ss_pred EEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cch-----hhccccccCcCCCCCccHHHHHH-Hhhh-cC---
Q psy17315 176 FHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RRS-----VDAKADSKKKMGPKKTDEGEKKM-LLGR-VG--- 242 (561)
Q Consensus 176 l~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-----v~NK~D~~~~~~~~~~~~~~l~~-l~~~-~~--- 242 (561)
++|+|.+.+ ..+.++.+.+.+.+. ... ++||+|+.....-.. ....+.. .... ..
T Consensus 77 IlV~Ditd~-----------~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~-~~R~V~~~~~~~la~~~~ 144 (331)
T 3r7w_B 77 VYVIDSQDE-----------YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVD-AQRDIMQRTGEELLELGL 144 (331)
T ss_dssp EEECCCSSC-----------TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHH-HHHHHHHHHHHTTSSSSC
T ss_pred EEEEECCch-----------HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhh-HHHHhhHHHHHHHHhhcc
Confidence 999998732 222333333333221 111 899999973210000 0011111 1111 11
Q ss_pred ---CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 ---TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ---~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.-..+..|+++ .++...+..+.+..
T Consensus 145 ~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 145 DGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp SCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred cccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 12356788887 58888888888774
No 319
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.64 E-value=5.6e-09 Score=107.08 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=77.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKP 322 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~ 322 (561)
..+|.+.|.+|+|||+|++.+.+..+.. ..+ |++.. ..+...+..+.+|||||. +.+..+...+.+....++.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~-~~p----T~~~~~~~~~~~~~~l~i~Dt~G~-~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIP----TIGFNVETVEYKNISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEE-EEE----ETTEEEEEEEETTEEEEEEECC------CCSHHHHHTTEEEEEE
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCC-ccc----ccceEEEEEecCcEEEEEEECCCC-HhHHHHHHHHhccCCEEEE
Confidence 4589999999999999999998875421 111 21111 123334457899999994 3333333332222211111
Q ss_pred hhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhhc
Q psy17315 323 EYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKK 402 (561)
Q Consensus 323 ~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~ 402 (561)
.+ + +.+.+.+..+..++. ..+.. ......|+|+|+||+|. ..
T Consensus 239 V~--------------D--~~~~~s~~~~~~~~~-----------------~~~~~-~~~~~~piilV~NK~Dl--~~-- 280 (329)
T 3o47_A 239 VV--------------D--SNDRERVNEAREELM-----------------RMLAE-DELRDAVLLVFANKQDL--PN-- 280 (329)
T ss_dssp EE--------------E--TTCSSSHHHHHHHHH-----------------HHHTC-GGGTTCEEEEEEECTTS--TT--
T ss_pred EE--------------E--CCchHHHHHHHHHHH-----------------HHHhh-hccCCCeEEEEEECccC--Cc--
Confidence 11 0 000011111111111 01111 11247899999999954 32
Q ss_pred cchHHHHHHHHHhc---CCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDAN---DPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~---~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
....+++.+.+... ..+.+++++||++|.|+++|.+...
T Consensus 281 ~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 281 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp CCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 12233444333221 1245799999999999988755443
No 320
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.63 E-value=7.7e-09 Score=93.25 Aligned_cols=57 Identities=37% Similarity=0.398 Sum_probs=35.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
+++.+.|.+|+|||+|++.+.+..+.. +...++++ +... .+...+..+.+|||||..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 60 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV--VADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEEEEETTEEEEEEECGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee--ccCCCCceecceEEEEEeCCceEEEEECCCCC
Confidence 478999999999999999999875321 22222332 2221 223334578899999964
No 321
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.63 E-value=1e-07 Score=107.26 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=53.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC---C---ccc------C------CCcccccCccc--cccC-------CeEEEEe
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS---A---AAE------N------FPFCTIDPNEN--NKVP-------AFLNVVD 147 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~---~---~~~------~------~~~~T~~~~~~--~~~~-------~~i~l~D 147 (561)
...+|+++|.+|+|||||+++|+... . .+. + ..|.|...... .+.. ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 34689999999999999999996431 1 111 1 23444432221 1122 5789999
Q ss_pred CCCcccCCccccccccccccccccCCEEEEEecccc
Q psy17315 148 IAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 148 tpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
|||...... .....++.+|.+++|+|++.
T Consensus 89 TPG~~df~~-------~~~~~l~~aD~aIlVvDa~~ 117 (704)
T 2rdo_7 89 TPGHVDFTI-------EVERSMRVLDGAVMVYCAVG 117 (704)
T ss_pred CCCccchHH-------HHHHHHHHCCEEEEEEeCCC
Confidence 999864332 23455688999999999863
No 322
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.61 E-value=1.2e-08 Score=96.12 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=35.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chh-hhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIE-IINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~-~~~~el~l~Dt~Gi 302 (561)
...+|.+.|.+|+|||+|++.+.+..... ....+.-+..... .+. .....+.+|||+|.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 79 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 79 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCC
Confidence 34689999999999999999988863222 1111111111110 111 12246889999994
No 323
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.61 E-value=1.7e-08 Score=93.87 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHhh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.++.+.|.+|+|||+|++.+++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999985
No 324
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.60 E-value=2.8e-08 Score=103.20 Aligned_cols=56 Identities=34% Similarity=0.456 Sum_probs=36.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhhHhhhcccHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINEELRLKDVEHI 302 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~~el~l~Dt~Gi 302 (561)
+.+.++|.+|+|||||+|.+++..+.....++ .|.|+.. .+.+.+..+.+|||+|+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~--~T~d~~~~~i~~~g~~v~l~DT~G~ 236 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLF--TTMSPKRYAIPINNRKIMLVDTVGF 236 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCB
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcc--cccCCEEEEEEECCEEEEEEeCCCc
Confidence 34999999999999999999998654333333 2345543 34444567889999996
No 325
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.60 E-value=3.3e-08 Score=100.07 Aligned_cols=130 Identities=14% Similarity=-0.001 Sum_probs=78.1
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhh-cCCCCc-----cCCCChH---HHHHHHHHHHhcCCCc--ccccc
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILI-SDKPTW-----GDGDGPK---APKRRKQHLSDKLRPK--ADSKK 74 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~-~~k~~l-----~DL~~~~---~~~~w~~~l~~~~~~~--~~~~~ 74 (561)
.+.+|.|.|++.| ..+.+ .+++....+. .+.|.+ +||.++. ..+.|.+++++.+..+ ++++.
T Consensus 80 aD~vliV~d~~~p------~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~ 152 (302)
T 2yv5_A 80 VDRVIIVETLKMP------EFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKT 152 (302)
T ss_dssp CCEEEEEECSTTT------TCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTT
T ss_pred cCEEEEEEECCCC------CCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3567999999999 54433 2333111111 334444 9999876 2677888887766554 66666
Q ss_pred ccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc-------ccccCccccccCCeEEEE
Q psy17315 75 KMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF-------CTIDPNENNKVPAFLNVV 146 (561)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~-------~T~~~~~~~~~~~~i~l~ 146 (561)
+.+...... ...+..++++|.+|||||||+|+|. .. ..++.... +|+.... .......+++
T Consensus 153 g~gi~~L~~---------~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~-~~~~~~g~v~ 221 (302)
T 2yv5_A 153 GEGIDELVD---------YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL-IPFGKGSFVG 221 (302)
T ss_dssp CTTHHHHHH---------HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE-EEETTTEEEE
T ss_pred CCCHHHHHh---------hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE-EEcCCCcEEE
Confidence 544332111 0124578999999999999999999 55 44444443 3332211 1122346889
Q ss_pred eCCCccc
Q psy17315 147 DIAGLVK 153 (561)
Q Consensus 147 DtpG~~~ 153 (561)
||||+..
T Consensus 222 d~pg~~~ 228 (302)
T 2yv5_A 222 DTPGFSK 228 (302)
T ss_dssp SSCCCSS
T ss_pred ECcCcCc
Confidence 9999863
No 326
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.59 E-value=6.7e-09 Score=109.53 Aligned_cols=242 Identities=16% Similarity=0.203 Sum_probs=120.0
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hhhh-HhhhcccHHHHHHHHH-------HHHH
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EIIN-EELRLKDVEHIEKEIN-------KIEK 311 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~~~-~el~l~Dt~Gi~~~~~-------~l~~ 311 (561)
+.....+.+.|.+|+|||||++.|++..+..+.++++ |.+|.... ...+ ..+.+|||||+.+... ...+
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ft--Tl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~ 231 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT--TLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR 231 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTC--SSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccc--eecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH
Confidence 4556789999999999999999999886544444442 23343222 2222 4678999999632100 0000
Q ss_pred HHhhCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEe
Q psy17315 312 LVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLV 391 (561)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~ 391 (561)
. .+....++..+ | +. .+.+..+..+. .++..+ ...+..+|.|+|+
T Consensus 232 ~-~era~~lL~vv-------D---------ls-~~~~~~ls~g~---------------~el~~l--a~aL~~~P~ILVl 276 (416)
T 1udx_A 232 H-IARTRVLLYVL-------D---------AA-DEPLKTLETLR---------------KEVGAY--DPALLRRPSLVAL 276 (416)
T ss_dssp H-HTSSSEEEEEE-------E---------TT-SCHHHHHHHHH---------------HHHHHH--CHHHHHSCEEEEE
T ss_pred H-HHHHHhhhEEe-------C---------Cc-cCCHHHHHHHH---------------HHHHHH--hHHhhcCCEEEEE
Confidence 0 00111111100 0 00 01111110000 111111 1112479999999
Q ss_pred cCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHHHHHhcccchHHHHHHHHHcccCceecc
Q psy17315 392 NLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFF 471 (561)
Q Consensus 392 NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~~ 471 (561)
||+|. .. . ..++.+.+.+... +.+++++||+++.|+++|.+...+.+.+....+... . +|.. ....-|
T Consensus 277 NKlDl--~~-~-~~~~~l~~~l~~~--g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~-~----~~~~-~~~~~~ 344 (416)
T 1udx_A 277 NKVDL--LE-E-EAVKALADALARE--GLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPK-P----VPRK-EVQAGV 344 (416)
T ss_dssp ECCTT--SC-H-HHHHHHHHHHHTT--TSCEEECCTTTCTTHHHHHHHHHHHHHTSCCCCCCC-C----CC-----CCCC
T ss_pred ECCCh--hh-H-HHHHHHHHHHHhc--CCeEEEEECCCccCHHHHHHHHHHHHHhcccccccc-c----cccc-ccCCCc
Confidence 99954 32 1 3445555555443 568999999999999888666554433221111000 0 0000 000011
Q ss_pred ccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhH-HhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 472 TAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDF-KEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 472 t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~-~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
+.. .+-+......|....+++.+++=|-.+.+.+ +.+. .++|=+++.+++| +++||.|.|
T Consensus 345 ~i~-~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~gv~~~l~~~g----------~~~gd~v~i 405 (416)
T 1udx_A 345 EVV-PVAEGVYEVRAPEVERYLARIKGDLMEAAGY-----LQEVFRRQGVEAALRAKG----------VRAGDLVRI 405 (416)
T ss_dssp EEE-EEETTEEEEECHHHHHHHTTEEECTGGGHHH-----HHHHHHHTTHHHHHHTTT----------CCTTCEEEE
T ss_pred EEE-EcCCCeEEEeChHHHHHHHhcCCCCHHHHHH-----HHHHHHHCCHHHHHHHcC----------CCCCCEEEE
Confidence 111 0112233445666666666666655555521 2223 2255566676666 778887765
No 327
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.58 E-value=1.6e-08 Score=110.50 Aligned_cols=154 Identities=13% Similarity=0.096 Sum_probs=75.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccc----c-cchhh----hhHhhhcccHHHHHHHHHHHHHHHh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP----V-RDIEI----INEELRLKDVEHIEKEINKIEKLVQ 314 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp----~-~~~~~----~~~el~l~Dt~Gi~~~~~~l~~~~~ 314 (561)
..+|.++|.+|+|||+|++.+++..+.....+.+.-++.. . ..+.. ....+.+|||||.+. +..+...+.
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~-~~~~~~~~l 119 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI-MHASHQFFM 119 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT-TTTTCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH-HHHHHHHHc
Confidence 4689999999999999999999987543332222111110 0 02222 235688999999422 211111111
Q ss_pred hCCccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhc-cCCceEEEecC
Q psy17315 315 RGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLL-TAKTQIYLVNL 393 (561)
Q Consensus 315 ~~~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l-~~kP~iiv~NK 393 (561)
+.. ++++.|++.... +....++..+... ..+|+|+|+||
T Consensus 120 ~~~----------------------------d~ii~V~D~s~~------------~~~~~~~~~l~~~~~~~pvilV~NK 159 (535)
T 3dpu_A 120 TRS----------------------------SVYMLLLDSRTD------------SNKHYWLRHIEKYGGKSPVIVVMNK 159 (535)
T ss_dssp HSS----------------------------EEEEEEECGGGG------------GGHHHHHHHHHHHSSSCCEEEEECC
T ss_pred cCC----------------------------cEEEEEEeCCCc------------hhHHHHHHHHHHhCCCCCEEEEEEC
Confidence 111 111111111000 1111122222211 35899999999
Q ss_pred ChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 394 ~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
+|. ........+.+++.+... +.+++++||++|.|+++|.+...+
T Consensus 160 ~Dl--~~~~~v~~~~~~~~~~~~--~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 160 IDE--NPSYNIEQKKINERFPAI--ENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp TTT--CTTCCCCHHHHHHHCGGG--TTCEEECCC-----CTTHHHHHHH
T ss_pred CCc--ccccccCHHHHHHHHHhc--CCceEEEecCcccCHHHHHHHHHH
Confidence 954 332333455666665554 567999999999999998665543
No 328
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.55 E-value=2.9e-08 Score=97.49 Aligned_cols=60 Identities=13% Similarity=0.015 Sum_probs=38.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~~el~l~Dt~Gi 302 (561)
...+|.+.|.+|+|||+|+|.|++..+.....++.+.|.++.. .+...+..+.+|||||+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~ 80 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDI 80 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCC
Confidence 4468999999999999999999998655444443222323322 23344567899999997
No 329
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.55 E-value=1.8e-07 Score=104.66 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=53.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCCCc---cc---------C------CCcccccCccc--cccCCeEEEEeCCCcccC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAA---AE---------N------FPFCTIDPNEN--NKVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~~~---~~---------~------~~~~T~~~~~~--~~~~~~i~l~DtpG~~~~ 154 (561)
...+++++|.+|+|||||+++|++.... .+ + ..|.|...... ......+.++||||....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4568999999999999999999853311 11 0 11333332221 112346899999998542
Q ss_pred CccccccccccccccccCCEEEEEeccc
Q psy17315 155 AAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 155 ~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
. ......++.+|.+++|+|++
T Consensus 88 ~-------~~~~~~l~~ad~~ilVvD~~ 108 (665)
T 2dy1_A 88 V-------GEIRGALEAADAALVAVSAE 108 (665)
T ss_dssp H-------HHHHHHHHHCSEEEEEEETT
T ss_pred H-------HHHHHHHhhcCcEEEEEcCC
Confidence 2 23455678899999999875
No 330
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.55 E-value=4e-08 Score=99.72 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=38.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhh-hhHhhhcccHHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEI-INEELRLKDVEHIEKE 305 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~-~~~el~l~Dt~Gi~~~ 305 (561)
..+|.+.|.+|+|||+|++.+.+.. ....+..+++| +... .+.+ .+..+.+|||||.++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~--~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY--SAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC--CTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH
Confidence 4679999999999999999988763 22222222332 2221 1121 2356889999997543
No 331
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.55 E-value=4.1e-08 Score=101.75 Aligned_cols=163 Identities=16% Similarity=0.138 Sum_probs=85.2
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHH----HHHHHHHhhC
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEI----NKIEKLVQRG 316 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~----~~l~~~~~~~ 316 (561)
.....+.+.|.+|+|||+|+|.+++..+....++++ |.++. ..+...+..+.+|||||+.... +.+......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~- 241 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT--TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAIL- 241 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTC--SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCe--eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHH-
Confidence 345789999999999999999999876433333322 11111 1122223468899999973210 000000000
Q ss_pred CccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCC-HHHHHHHHhhhhcc-CCceEEEecCC
Q psy17315 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWS-NADIEHLNKLNLLT-AKTQIYLVNLS 394 (561)
Q Consensus 317 ~~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~-~~e~~~l~~~~~l~-~kP~iiv~NK~ 394 (561)
.. ...+ +.++.|+| .... ..++ .....++....... ++|+++|+||+
T Consensus 242 ------~~---~~~a--------------d~illV~D------~s~~--~~~~~~~~~~~~~~i~~~~~~~piilV~NK~ 290 (357)
T 2e87_A 242 ------AL---RYLG--------------NLIIYIFD------PSEH--CGFPLEEQIHLFEEVHGEFKDLPFLVVINKI 290 (357)
T ss_dssp ------GG---GGTC--------------SEEEEEEC------TTCT--TSSCHHHHHHHHHHHHHHTTTSCEEEEECCT
T ss_pred ------HH---HhcC--------------CEEEEEEe------CCcc--ccCCHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 00 0000 11111111 0000 0111 11223333332212 79999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 395 D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
|. .. ....+.+.+++... +.+++++||++|.|+++|.+...+.+
T Consensus 291 Dl--~~--~~~~~~~~~~~~~~--~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 291 DV--AD--EENIKRLEKFVKEK--GLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp TT--CC--HHHHHHHHHHHHHT--TCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred cc--CC--hHHHHHHHHHHHhc--CCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 54 22 11223444444443 57899999999999999877665543
No 332
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.54 E-value=6.7e-08 Score=105.85 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=45.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcccccCccccc---------cCCeEEEEeCCCcccCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK---------VPAFLNVVDIAGLVKGA 155 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~T~~~~~~~~---------~~~~i~l~DtpG~~~~~ 155 (561)
.....|+|+|.||||||||+|+|+|..... +++++|++.+.+.+ .+..+.|+||||+....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 344789999999999999999999987322 56666655544432 24579999999998543
No 333
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.53 E-value=2.4e-08 Score=103.70 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
...++|+++|.+|+|||||+|+|.+..
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345789999999999999999998765
No 334
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.51 E-value=1.8e-08 Score=101.29 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.|.++|.+|+|||+|+|+|++..+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 446899999999999999999999865
No 335
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.50 E-value=1.3e-08 Score=109.84 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=80.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhc----cCCCcccccCCcc-ccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCC
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRA----FEDDDVTHVEGEV-NPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGD 317 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~----~~~~~v~~~~gt~-dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~ 317 (561)
...|.+.|..++|||+|+++|++.. +.........|.+ +.. ..+.+.+..+.+|||||.+.....+... ....
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~-~~~a 97 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA-ADII 97 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH-TTSC
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH-HhhC
Confidence 3579999999999999999999864 1111111112332 221 1223344578999999965432222211 1111
Q ss_pred ccccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhh
Q psy17315 318 KKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKD 397 (561)
Q Consensus 318 ~~~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d 397 (561)
|+++.|+++.. ....+..+.+..... .+.|.++|+||+|..
T Consensus 98 ----------------------------D~~ilVvda~~----------g~~~qt~e~l~~~~~-~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 98 ----------------------------DLALIVVDAKE----------GPKTQTGEHMLILDH-FNIPIIVVITKSDNA 138 (482)
T ss_dssp ----------------------------CEEEEEEETTT----------CSCHHHHHHHHHHHH-TTCCBCEEEECTTSS
T ss_pred ----------------------------CEEEEEEecCC----------CccHHHHHHHHHHHH-cCCCEEEEEECCCcc
Confidence 11111111100 011222232322222 478999999999542
Q ss_pred hhhhccchHHHHHHHHHhc--CCCCeEEeechhhhhhhCCCCHHH
Q psy17315 398 YIKKKNKWLPKIKEWVDAN--DPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~--~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.....+...+++.+++... .+..+++++||++|.|+.+|.+..
T Consensus 139 ~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L 183 (482)
T 1wb1_A 139 GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLI 183 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHH
Confidence 1111122344555555432 125789999999999998775544
No 336
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.50 E-value=6.7e-08 Score=91.03 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=81.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|.+|+|||+|++.+++..+.....+.+ | +++. ..+.+.+ ..+.+|||+|.++ +..+...+.+.....+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~-~-~~~~~~~i~~~g~~~~~~i~Dt~g~~~-~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-G-VEFATRSIQVDGKTIKAQIWDTAGQER-YRRITSAYYRGAVGAL 82 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCC-S-CEEEEEEEEETTEEEEEEEEECSSGGG-TTCCCHHHHTTCSEEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-c-eeEEEEEEEECCEEEEEEEEECCCchh-hhhhhHHHHhcCCEEE
Confidence 579999999999999999999986544333221 1 1111 1222222 3567899999532 2111111111111000
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
++- ++.+......+..++.. +.... ....|+++|+||+|.. ..
T Consensus 83 --------------~v~--d~~~~~s~~~~~~~~~~------------------~~~~~-~~~~~i~~v~nK~Dl~--~~ 125 (199)
T 2f9l_A 83 --------------LVY--DIAKHLTYENVERWLKE------------------LRDHA-DSNIVIMLVGNKSDLR--HL 125 (199)
T ss_dssp --------------EEE--ETTCHHHHHTHHHHHHH------------------HHHHS-CTTCEEEEEEECTTCG--GG
T ss_pred --------------EEE--ECcCHHHHHHHHHHHHH------------------HHHhc-CCCCeEEEEEECcccc--cc
Confidence 000 01111111111111111 11111 1368999999999543 22
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.....+..+.++.. ++..++.+||+.+.|+.++.+...+..
T Consensus 126 ~~~~~~~a~~l~~~--~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 126 RAVPTDEARAFAEK--NNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CCSCHHHHHHHHHH--TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHH--cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22333445555544 367889999999999888766555443
No 337
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.49 E-value=8.6e-08 Score=101.03 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=36.5
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcC-CCCeEEeechhhhhhhCCCCHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-PGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~-~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
..+|+++|+||+|....+......+++.+.+.... .+.+++++||++|.|+.+|.+..
T Consensus 128 ~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l 186 (403)
T 3sjy_A 128 GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGI 186 (403)
T ss_dssp TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHH
Confidence 34799999999954211111223445555543321 25689999999999997765443
No 338
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.48 E-value=1.7e-07 Score=94.75 Aligned_cols=131 Identities=18% Similarity=0.123 Sum_probs=73.8
Q ss_pred CCCceEEEeccCCCCCCCCccccCCCcccchhhhh-cCCCCc-----cCCCChHH---HHHHHHHHHhcCCCc--ccccc
Q psy17315 6 KKPTLKLIEATVPRDGLSFYESTNPKIPRSNQILI-SDKPTW-----GDGDGPKA---PKRRKQHLSDKLRPK--ADSKK 74 (561)
Q Consensus 6 ~~~~lev~DAR~P~~~~~~~~s~n~~l~~~~~~~~-~~k~~l-----~DL~~~~~---~~~w~~~l~~~~~~~--~~~~~ 74 (561)
.+..|.|.|++.| .++.+ .+++....+. .+.|.+ +||.+... .++|.+.+... ..+ ++++.
T Consensus 85 ad~vilV~D~~~~------~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAkt 156 (301)
T 1u0l_A 85 VDQVILVVTVKMP------ETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKT 156 (301)
T ss_dssp CCEEEEEECSSTT------CCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTT
T ss_pred CCEEEEEEeCCCC------CCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCC
Confidence 4567999999999 54432 1222110011 233333 99998765 56777776543 333 66666
Q ss_pred ccCCCCchhhhHhhhhcCCCCCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc-------ccccCccccccCCeEEEE
Q psy17315 75 KMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF-------CTIDPNENNKVPAFLNVV 146 (561)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~-------~T~~~~~~~~~~~~i~l~ 146 (561)
+.+.... ... ..+-.++++|.+|||||||+|+|.+.. ...+.... +|..... .......+++
T Consensus 157 g~gv~~l---f~~------l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~-~~~~~~g~v~ 226 (301)
T 1u0l_A 157 GMGIEEL---KEY------LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL-LKFDFGGYVV 226 (301)
T ss_dssp CTTHHHH---HHH------HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE-EECTTSCEEE
T ss_pred CcCHHHH---HHH------hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE-EEcCCCCEEE
Confidence 5443321 111 123468999999999999999999876 33343332 3333211 1122345899
Q ss_pred eCCCcccC
Q psy17315 147 DIAGLVKG 154 (561)
Q Consensus 147 DtpG~~~~ 154 (561)
|+||+...
T Consensus 227 q~p~~~~~ 234 (301)
T 1u0l_A 227 DTPGFANL 234 (301)
T ss_dssp SSCSSTTC
T ss_pred ECcCCCcc
Confidence 99998643
No 339
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.47 E-value=1.2e-07 Score=92.31 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=40.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|+|.|++..+.....+....|.++.. .+.+.+..+.+|||||+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~ 89 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIF 89 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCcc
Confidence 3468999999999999999999998765544442222223322 233445678999999953
No 340
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.47 E-value=8.4e-09 Score=106.91 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=38.3
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcC-----CCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-----PGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~-----~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
.+|.++|+||+|...........+++.+.+.... .+.+++++||++|.|+++|.+...+.
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERH 281 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999965322111222334444332221 14689999999999999997766544
No 341
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.46 E-value=6.1e-08 Score=103.26 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCc-eEEEecCChhhhhh----hccchHHHHHHHHHhcC----CCCeEEeechhhhhhhCCCCH
Q psy17315 384 AKT-QIYLVNLSAKDYIK----KKNKWLPKIKEWVDAND----PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 384 ~kP-~iiv~NK~D~d~~~----~~~~~~~~l~~~~~~~~----~~~~vi~iSA~~~~gl~~L~~ 438 (561)
+.| +|+|+||+|....+ ..+...+++.+++.... ...+++++||++|.|+.++.+
T Consensus 154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 566 99999999642110 01123344444443321 135799999999999999865
No 342
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.46 E-value=5.7e-09 Score=113.32 Aligned_cols=154 Identities=12% Similarity=0.143 Sum_probs=83.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhh-hhHhhhcccHHHHHHHHHHHHHHHhhCCcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEI-INEELRLKDVEHIEKEINKIEKLVQRGDKK 319 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~-~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~ 319 (561)
..++|.+.|.+|+|||+|+++|.+..+.....+ |++ +... .+.+ .+..+.||||||.+. + ..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~---giT~~i~~~~v~~~~g~~i~~iDTPGhe~-f-----------~~ 67 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAG---GITQHIGAFLVSLPSGEKITFLDTPGHAA-F-----------SA 67 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSC---CBCCCTTSCCBCSSCSSCCBCEECSSSCC-T-----------TT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCC---ceeEEEeEEEEEeCCCCEEEEEECCChHH-H-----------HH
Confidence 457899999999999999999998765443322 322 1111 1222 234789999999311 1 00
Q ss_pred ccchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhh
Q psy17315 320 LKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYI 399 (561)
Q Consensus 320 ~~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~ 399 (561)
..... +..+|+++.|++.. ........+.+..... .+.|+++|+||+|....
T Consensus 68 ~~~~~-----------------~~~aD~vILVVDa~----------dg~~~qt~e~l~~~~~-~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 68 MRARG-----------------TQVTDIVILVVAAD----------DGVMKQTVESIQHAKD-AHVPIVLAINKCDKAEA 119 (537)
T ss_dssp SBBSS-----------------SBSBSSCEEECBSS----------SCCCHHHHHHHHHHHT-TTCCEEECCBSGGGTTT
T ss_pred HHHHH-----------------HccCCEEEEEEECC----------CCccHHHHHHHHHHHH-cCCcEEEEEeccccccc
Confidence 00111 11123333222210 1223344444444433 47899999999965321
Q ss_pred hhccchHHHHHHH---HHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 400 KKKNKWLPKIKEW---VDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 400 ~~~~~~~~~l~~~---~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
. .......+.++ ++.+....+++++||++|.|+.+|.+..
T Consensus 120 ~-~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 120 D-PEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp S-CCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred c-hHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 1 12222233222 1111113589999999999998875544
No 343
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.44 E-value=6.8e-07 Score=97.65 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=51.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC------C----------ccc------CCCcccccCccc--cccCCeEEEEeCCCcc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS------A----------AAE------NFPFCTIDPNEN--NKVPAFLNVVDIAGLV 152 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~------~----------~~~------~~~~~T~~~~~~--~~~~~~i~l~DtpG~~ 152 (561)
.+|+|+|...+|||||.-+|.-.. . .+. ..-|.|...... .+.+..|.|+||||..
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 479999999999999999995211 0 111 122444433221 3456689999999998
Q ss_pred cCCccccccccccccccccCCEEEEEeccc
Q psy17315 153 KGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 153 ~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.+.. .....++-+|..++|||+.
T Consensus 112 DF~~-------Ev~raL~~~DgAvlVvda~ 134 (548)
T 3vqt_A 112 DFSE-------DTYRVLTAVDSALVVIDAA 134 (548)
T ss_dssp GCSH-------HHHHHHHSCSEEEEEEETT
T ss_pred HHHH-------HHHHHHHhcCceEEEeecC
Confidence 6553 2355678889999999985
No 344
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.42 E-value=1.1e-07 Score=102.55 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.8
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.....+|.++|.+|+|||+|+++|+..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999876
No 345
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.42 E-value=4.5e-08 Score=103.37 Aligned_cols=56 Identities=23% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcC-CCCeEEeechhhhhhhCCCCHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAND-PGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~-~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.+|+++|+||+|...........+++++++.... .+.+++++||++|.|+.+|.+.
T Consensus 135 ~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~ 191 (408)
T 1s0u_A 135 IDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKA 191 (408)
T ss_dssp CCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHH
T ss_pred CCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHH
Confidence 4689999999954211111234566777765421 2578999999999998766443
No 346
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.42 E-value=3.8e-08 Score=102.41 Aligned_cols=59 Identities=36% Similarity=0.423 Sum_probs=38.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccC----CCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFE----DDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~----~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
....+.+.|.+|+|||+|+|+|.+.... ...++..+|||.....+.. +..+.++||||+
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~-~~~~~liDtPG~ 221 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL-DEESSLYDTPGI 221 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES-SSSCEEEECCCB
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe-cCCeEEEeCCCc
Confidence 4568999999999999999999987422 2234556677632222222 224889999997
No 347
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.41 E-value=4.2e-08 Score=103.67 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=36.4
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhc-CCCCeEEeechhhhhhhCCCCHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN-DPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~-~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.+|+++|+||+|...........+++++++... ..+.+++++||++|.|+.+|.+.
T Consensus 137 ~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~ 193 (410)
T 1kk1_A 137 QKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKA 193 (410)
T ss_dssp CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred CCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHH
Confidence 468999999995421111112345566666532 12578999999999999776444
No 348
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.38 E-value=1.5e-07 Score=89.07 Aligned_cols=59 Identities=25% Similarity=0.360 Sum_probs=34.0
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
.....+.+.|.+|+|||+|++.+++..+ ...+++.+|++.-...+.. +..+.+|||||+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~~~~~~~G~~~~~~~~~~-~~~~~l~Dt~G~ 82 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKS-LARTSKTPGRTQLINLFEV-ADGKRLVDLPGY 82 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEE-ETTEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-cccccCCCccceeeEEEEe-cCCEEEEECcCC
Confidence 4567899999999999999999998753 2334445566521111111 126789999996
No 349
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.37 E-value=3.9e-08 Score=99.72 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.|+++|.+|+|||||+|+|++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 347899999999999999999999864
No 350
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.37 E-value=2.1e-08 Score=105.95 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=81.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCc-ccccc-chhhhhH-hhhcccHHHHHHHHHHHHHHHhhCCccc
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGE-VNPVR-DIEIINE-ELRLKDVEHIEKEINKIEKLVQRGDKKL 320 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt-~dp~~-~~~~~~~-el~l~Dt~Gi~~~~~~l~~~~~~~~~~~ 320 (561)
..+|.+.|.+|+|||+|+|++++..+. .++..+|+ +++.. .+...+. .+.+|||||.... ..+ ....
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~--~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~-~~l-------~~~~ 103 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVS--IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV-GEL-------GRLR 103 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEETTTEEEEEEECSSTTCC-CTT-------CCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCC--ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc-cch-------hHHH
Confidence 468999999999999999999987542 22233344 34442 2333332 7899999996320 000 0000
Q ss_pred cchhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhh
Q psy17315 321 KPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIK 400 (561)
Q Consensus 321 ~~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~ 400 (561)
..........+ |+++.|++ . .....+..++..... ..+|+++|+||+|. ..
T Consensus 104 ~~~~~~~l~~a--------------D~vllVvD------~------~~~~~~~~~l~~l~~-~~~piIvV~NK~Dl--~~ 154 (423)
T 3qq5_A 104 VEKARRVFYRA--------------DCGILVTD------S------APTPYEDDVVNLFKE-MEIPFVVVVNKIDV--LG 154 (423)
T ss_dssp HHHHHHHHTSC--------------SEEEEECS------S------SCCHHHHHHHHHHHH-TTCCEEEECCCCTT--TT
T ss_pred HHHHHHHHhcC--------------CEEEEEEe------C------CChHHHHHHHHHHHh-cCCCEEEEEeCcCC--CC
Confidence 00000000001 11111111 0 123344444544443 47999999999954 32
Q ss_pred hccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHHHH
Q psy17315 401 KKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444 (561)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~~ 444 (561)
.... +..+++.+.. +.+++++||++|.|++++.+...+..
T Consensus 155 ~~~~--~~~~~l~~~~--g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 155 EKAE--ELKGLYESRY--EAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp CCCT--HHHHHSSCCT--TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred ccHH--HHHHHHHHHc--CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 2221 3333333222 57899999999999999876655443
No 351
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.37 E-value=3.6e-07 Score=89.96 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=39.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcccccc-chhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|+|.|++.........+.+.|.+... .+.+.+..+.+|||||+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF 82 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCC
Confidence 3468999999999999999999987532222222111222221 223345679999999964
No 352
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.34 E-value=1.6e-07 Score=94.06 Aligned_cols=58 Identities=31% Similarity=0.447 Sum_probs=35.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
....+.++|.+|+|||+|+|.|.+.. ...++..+|+|.....+. .+..+.++||||+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~--~~~~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN--IAKTGDRPGITTSQQWVK-VGKELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC--CC------------CCEE-ETTTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc--eeecCCCCCeeeeeEEEE-eCCCEEEEECcCcC
Confidence 45689999999999999999999873 344555566652222221 24578899999973
No 353
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.32 E-value=1e-07 Score=93.87 Aligned_cols=53 Identities=6% Similarity=0.011 Sum_probs=36.3
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
...|+++|+||+|. .. ....++..+++... .+.+++.+||+++.|++++.+..
T Consensus 197 ~~~piilV~NK~Dl--~~--~~~v~~~~~~~~~~-~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 197 TKKPIVVVLTKCDE--GV--ERYIRDAHTFALSK-KNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp TTCCEEEEEECGGG--BC--HHHHHHHHHHHHTS-SSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCCEEEEEEcccc--cc--cHHHHHHHHHHHhc-CCCeEEEEECCCCCCHHHHHHHH
Confidence 46899999999954 22 11234555555432 25689999999999988775543
No 354
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.3e-07 Score=102.78 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.6
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+|.++|.+|+|||+|+++|+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 456789999999999999999998763
No 355
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.32 E-value=4.1e-08 Score=101.46 Aligned_cols=25 Identities=40% Similarity=0.700 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.++|.+|+|||||+|.|++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999974
No 356
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.32 E-value=1e-07 Score=90.83 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=38.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
...+|.+.|.+|+||++|++.+.+..+........++ .........+.+|||||.++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL-----SAADYDGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCE-----EETTGGGSSCEEEECCCCGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCce-----EEEEeeCceEEEEECCCcHH
Confidence 4578999999999999999999998653321111111 11222445788999999754
No 357
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.30 E-value=2e-07 Score=96.36 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
..+.|+++|.+|+|||+|+|+|++..+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCc
Confidence 347899999999999999999999764
No 358
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.30 E-value=9e-08 Score=107.64 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=25.3
Q ss_pred cCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 241 VGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 241 ~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+|.++|.+|+|||+|+|+|++..
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999999999875
No 359
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.30 E-value=2.1e-07 Score=87.26 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=78.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhh--HhhhcccHHHHHHHHHHHHHHHhhCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIIN--EELRLKDVEHIEKEINKIEKLVQRGDKKLK 321 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~--~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~ 321 (561)
.++.+.|.+|+|||+|++.+++..+.....+++ | ++.. ..+.+.+ ..+.+|||+|.++.. .+...+.+.....+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~-~-~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~-~~~~~~~~~~~~~i 106 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-G-VEFATRSIQVDGKTIKAQIWDTAGLERYR-AITSAYYRGAVGAL 106 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCC-S-EEEEEEEEEETTEEEEEEEEEECSCCSSS-CCCHHHHTTCCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-c-eEEEEEEEEECCEEEEEEEEECCCCcchh-hhhHHHhhcCCEEE
Confidence 579999999999999999999986544333221 2 1111 1222222 235679999953211 11111111110000
Q ss_pred chhhhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCceEEEecCChhhhhhh
Q psy17315 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKK 401 (561)
Q Consensus 322 ~~~l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~ 401 (561)
++- ++.+...+..+..++. .+.... ....|+++|+||+|.. ..
T Consensus 107 --------------~v~--d~~~~~s~~~~~~~~~------------------~~~~~~-~~~~~i~~v~nK~Dl~--~~ 149 (191)
T 1oix_A 107 --------------LVY--DIAKHLTYENVERWLK------------------ELRDHA-DSNIVIMLVGNKSDLR--HL 149 (191)
T ss_dssp --------------EEE--ETTCHHHHHTHHHHHH------------------HHHHHS-CTTCEEEEEEECGGGG--GG
T ss_pred --------------EEE--ECcCHHHHHHHHHHHH------------------HHHHhc-CCCCcEEEEEECcccc--cc
Confidence 000 0011111111111111 111111 1368999999999543 22
Q ss_pred ccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHH
Q psy17315 402 KNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDD 439 (561)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~ 439 (561)
.....+..+.++.. ++..++.+||+++.|+.++.+.
T Consensus 150 ~~~~~~~a~~l~~~--~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 150 RAVPTDEARAFAEK--NGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp CCSCHHHHHHHHHH--TTCEEEECCTTTCTTHHHHHHH
T ss_pred cccCHHHHHHHHHH--cCCEEEEEeCCCCCCHHHHHHH
Confidence 23334445555554 3678899999999998776443
No 360
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.29 E-value=4.7e-07 Score=96.33 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=34.6
Q ss_pred CCceEEEecCChhhhhhhcc----chHHHHHHHHHhcC---CCCeEEeechhhhhhhCCCCH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKN----KWLPKIKEWVDAND---PGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~----~~~~~l~~~~~~~~---~~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+|+|+|+||+|. ..... ...+++.++++... +..+++++||++|.|+.++.+
T Consensus 157 ~~~iIvviNK~Dl--~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 157 IKHIVVAINKMDL--NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp CCEEEEEEECTTT--TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred CCeEEEEEEcCcC--CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 3579999999954 32111 12344555555441 126899999999999998643
No 361
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.23 E-value=5e-07 Score=103.69 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=53.8
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC-CcccC---------------CCcccccCccc--ccc----------------CC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS-AAAEN---------------FPFCTIDPNEN--NKV----------------PA 141 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~-~~~~~---------------~~~~T~~~~~~--~~~----------------~~ 141 (561)
..+|+++|.+|+|||||+|+|++.. ...+. ..|.|...... .+. ..
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 3689999999999999999998643 11111 23344332211 111 34
Q ss_pred eEEEEeCCCcccCCccccccccccccccccCCEEEEEecccc
Q psy17315 142 FLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 142 ~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
.+.||||||...... .....++.+|++++|+|++.
T Consensus 99 ~i~liDTPG~~df~~-------~~~~~l~~aD~ailVvDa~~ 133 (842)
T 1n0u_A 99 LINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDTIE 133 (842)
T ss_dssp EEEEECCCCCCSSCH-------HHHHHHHTCSEEEEEEETTT
T ss_pred eEEEEECcCchhhHH-------HHHHHHHhCCEEEEEEeCCC
Confidence 689999999875432 33456789999999999864
No 362
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.23 E-value=1.1e-07 Score=102.51 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=82.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh------cCC-CcccC-------------------CCc----ccccCcc----c----
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT------KSS-AAAEN-------------------FPF----CTIDPNE----N---- 136 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~------~~~-~~~~~-------------------~~~----~T~~~~~----~---- 136 (561)
.+..|+++|.|||||||++|.|+ |.+ ..++. .|. ++.++.. .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998 554 11111 110 1111100 0
Q ss_pred cccCCeEEEEeCCCcccCCccccccccccc--cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcchh
Q psy17315 137 NKVPAFLNVVDIAGLVKGAAEGQGLGNAFL--SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSV 214 (561)
Q Consensus 137 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l--~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v 214 (561)
......+.||||||...... .+...+. ..+..+|.+++|+|+.... ...+....+.+. ....-.|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~---~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~i~gvV 246 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED---SLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VDVASVI 246 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH---HHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HCCCCEE
T ss_pred HHCCCcEEEEeCCCCcccch---hHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cCceEEE
Confidence 01345799999999874321 1111111 1122689999999986321 011111112111 1111228
Q ss_pred hccccccCcCCCCCccHHHHHHH-------------hhhcCCCcEEEEEccCCCC-HHHHHHHHHhh
Q psy17315 215 DAKADSKKKMGPKKTDEGEKKML-------------LGRVGTNLKVGIVGVPNVG-KSTFFNVLTKR 267 (561)
Q Consensus 215 ~NK~D~~~~~~~~~~~~~~l~~l-------------~~~~~~~~~i~isg~~~~G-ks~l~~~l~~~ 267 (561)
.||+|...+.+. ........ .......+.+.+|+..|.| +.+|++++.+.
T Consensus 247 lNK~D~~~~~g~---~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 247 VTKLDGHAKGGG---ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECTTSCCCCTH---HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeCCccccchHH---HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999998743221 00001100 0111233445678888999 99999998765
No 363
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.21 E-value=1.8e-06 Score=82.62 Aligned_cols=51 Identities=18% Similarity=0.072 Sum_probs=34.2
Q ss_pred hhccccccCcCCCCCccHHHHHHHhhhc-CCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 214 VDAKADSKKKMGPKKTDEGEKKMLLGRV-GTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 214 v~NK~D~~~~~~~~~~~~~~l~~l~~~~-~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
++||+|+...... ....+....... ...+.+.+|+++|.|+..+++++.+.
T Consensus 170 v~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 170 VINKIDLADAVGA---DIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp EEECGGGHHHHTC---CHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEeccccCchhHH---HHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 8999998743211 122232222222 34567899999999999999999765
No 364
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.18 E-value=2.9e-07 Score=91.11 Aligned_cols=120 Identities=21% Similarity=0.219 Sum_probs=66.7
Q ss_pred cccccccccCCEEEEEecccccchhhh------ccchhhHhhhHHHHHHHHHHhcchhhccccccCcC------------
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFI------SLNTITIWRNLKLLETRIRDLRRSVDAKADSKKKM------------ 224 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~v~NK~D~~~~~------------ 224 (561)
.++...+.++|+|++|+|++.+..... .++... |.||+|+....
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~ii------------------vlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETII------------------LLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEE------------------EEECGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEE------------------EEECccCCCHHHHHHHHHHHHHc
Confidence 456788899999999999874321100 222222 55565554210
Q ss_pred CC---CC-ccHHHHHHHhhhcCCC-cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccH
Q psy17315 225 GP---KK-TDEGEKKMLLGRVGTN-LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDV 299 (561)
Q Consensus 225 ~~---~~-~~~~~l~~l~~~~~~~-~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt 299 (561)
+. .+ .....+..+....... .++.++|.+|+|||+|+|.+.+... ..+..++|++.....+. .+..+.+|||
T Consensus 75 g~~v~iSa~~~~gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~--~~~~~~~g~T~~~~~~~-~~~~~~l~Dt 151 (262)
T 3cnl_A 75 GKRVITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA--SSVGAQPGITKGIQWFS-LENGVKILDT 151 (262)
T ss_dssp TCCEEECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEE-CTTSCEEESS
T ss_pred CCeEEEECCCCcCHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc--cccCCCCCCccceEEEE-eCCCEEEEEC
Confidence 00 01 1111234444444444 6899999999999999999998743 23344556652222111 2346889999
Q ss_pred HHHH
Q psy17315 300 EHIE 303 (561)
Q Consensus 300 ~Gi~ 303 (561)
||+.
T Consensus 152 pG~~ 155 (262)
T 3cnl_A 152 PGIL 155 (262)
T ss_dssp CEEC
T ss_pred CCcc
Confidence 9973
No 365
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.18 E-value=7.2e-07 Score=94.87 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=34.9
Q ss_pred CceEEEecCChhhhh---hh-ccchHHHHHHHHHhcC--C-CCeEEeechhhhhhhCCCCH
Q psy17315 385 KTQIYLVNLSAKDYI---KK-KNKWLPKIKEWVDAND--P-GATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 385 kP~iiv~NK~D~d~~---~~-~~~~~~~l~~~~~~~~--~-~~~vi~iSA~~~~gl~~L~~ 438 (561)
+|+++|+||+|.... +. .....+++++++.... + ..+++++||++|.|+.++.+
T Consensus 145 ~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 145 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 579999999954210 00 0223455666665431 1 26899999999999987754
No 366
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.16 E-value=1.4e-07 Score=98.22 Aligned_cols=144 Identities=12% Similarity=0.095 Sum_probs=79.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHHHHHHHHHHHhhCCccccchh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEY 324 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~~~~~l~~~~~~~~~~~~~~~ 324 (561)
.|.+.|..++|||+|+++|+++-. |++.. ..+.+.+..+.+|||||.++....+...+ +..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~gi----------Ti~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~-~~a------- 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKGT----------SSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITAL-NIS------- 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEEE----------ESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHH-HTC-------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCE----------EEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHH-HHC-------
Confidence 799999999999999999983311 11111 12333445689999999644322222111 111
Q ss_pred hhhhhhhhhhhhhccCCCChHHHHHHHHHHHhccCCCcccCCCCCHHHHHHHHhhhhccCCce-EEEec-CChhhhhhhc
Q psy17315 325 VSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQ-IYLVN-LSAKDYIKKK 402 (561)
Q Consensus 325 l~~~~~~di~~~~~~~~i~~~d~l~~v~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~l~~kP~-iiv~N-K~D~d~~~~~ 402 (561)
|.++.|++ .+ .+..+..+.+..... .+.|. ++|+| |+|. ..+..
T Consensus 85 ---------------------D~ailVvd--~~---------g~~~qt~e~~~~~~~-~~i~~~ivvvNNK~Dl-~~~~~ 130 (370)
T 2elf_A 85 ---------------------DIAVLCIP--PQ---------GLDAHTGECIIALDL-LGFKHGIIALTRSDST-HMHAI 130 (370)
T ss_dssp ---------------------SEEEEEEC--TT---------CCCHHHHHHHHHHHH-TTCCEEEEEECCGGGS-CHHHH
T ss_pred ---------------------CEEEEEEc--CC---------CCcHHHHHHHHHHHH-cCCCeEEEEEEeccCC-CHHHH
Confidence 11111111 00 122222333332222 36777 89999 9965 11101
Q ss_pred cchHHHHHHHHHhcC-CCCeEEe--echhh---hhhhCCCCHHHH
Q psy17315 403 NKWLPKIKEWVDAND-PGATIIP--FSGVF---EHQLVDMPDDER 441 (561)
Q Consensus 403 ~~~~~~l~~~~~~~~-~~~~vi~--iSA~~---~~gl~~L~~~~~ 441 (561)
....+++++++.... ...++++ +||++ +.|+++|.+...
T Consensus 131 ~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~ 175 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARIN 175 (370)
T ss_dssp HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence 123355666654431 2468999 99999 999988865443
No 367
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.15 E-value=2.3e-06 Score=95.31 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=52.6
Q ss_pred EEEEEEcCCCCHHHHHHHHh---cCC---Cccc------CC------CcccccCccc--cccCCeEEEEeCCCcccCCcc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLT---KSS---AAAE------NF------PFCTIDPNEN--NKVPAFLNVVDIAGLVKGAAE 157 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~---~~~---~~~~------~~------~~~T~~~~~~--~~~~~~i~l~DtpG~~~~~~~ 157 (561)
+|+|+|...+|||||.-+|. |.- ..+. ++ -|.|...... .+.+..|.|+||||......
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~- 82 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA- 82 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH-
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH-
Confidence 58999999999999999995 221 1111 11 1344332221 34456799999999875543
Q ss_pred ccccccccccccccCCEEEEEeccc
Q psy17315 158 GQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 158 ~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
.....++-+|..++|||+.
T Consensus 83 ------Ev~raL~~~DgavlVVDa~ 101 (638)
T 3j25_A 83 ------EVYRSLSVLDGAILLISAK 101 (638)
T ss_dssp ------HHHHHHTTCSEEECCEESS
T ss_pred ------HHHHHHHHhCEEEEEEeCC
Confidence 2355678899999999985
No 368
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.14 E-value=7.5e-08 Score=108.05 Aligned_cols=71 Identities=8% Similarity=0.021 Sum_probs=42.7
Q ss_pred CHHHH-HHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHH--HHHhcCCCCeEEeechhhhhhhCCCCHHHHHH
Q psy17315 369 SNADI-EHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKE--WVDANDPGATIIPFSGVFEHQLVDMPDDERQR 443 (561)
Q Consensus 369 ~~~e~-~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~--~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~~ 443 (561)
...+. .++..+.. .++|+|+|+||+| ++...... ..+.+ .......+.+++++||++|.|+.+|.+...++
T Consensus 202 ~~~d~l~ll~~L~~-~g~pvIlVlNKiD--lv~~~~~~-~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 202 ANSDALKIAKEVDP-QGQRTIGVITKLD--LMDEGTDA-RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp SSCHHHHHHHHHCT-TCSSEEEEEECTT--SSCTTCCS-HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred chhHHHHHHHHHHh-cCCCEEEEEeCcc--cCCcchhh-HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 33444 45555443 5799999999995 44322222 22211 00000124578999999999999998877653
No 369
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.14 E-value=1.5e-07 Score=99.12 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+|.+.|..|+|||+|++.|++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 3467999999999999999999985
No 370
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.14 E-value=2.8e-08 Score=106.96 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=38.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc--cchhhhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV--RDIEIINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~--~~~~~~~~el~l~Dt~Gi 302 (561)
..+.+.+.|..++|||+|+++|.+..+...... |.+..+ ..+.+.+..+.+|||||.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~---GIT~~i~~~~v~~~~~~i~~iDTPGh 61 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG---GITQHIGAYHVETENGMITFLDTPGH 61 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC---CCCCCSSCCCCCTTSSCCCEECCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCC---CeeEeEEEEEEEECCEEEEEEECCCc
Confidence 457899999999999999999998755433321 222111 123334557899999994
No 371
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.12 E-value=7.3e-07 Score=92.53 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=46.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccch-hhhhHhhhcccHHHHHH
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI-EIINEELRLKDVEHIEK 304 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~-~~~~~el~l~Dt~Gi~~ 304 (561)
..|+++|+||+|||||+|.|++.....+++++ .|.+|+.+. .+.+.++.++||||+.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pf--tT~~~~~g~~~~~~~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEF--TTLVTVPGVIRYKGAKIQMLDLPGIID 131 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCS--SCCCEEEEEEEETTEEEEEEECGGGCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCC--ceeeeeeEEEEeCCcEEEEEeCCCccC
Confidence 57999999999999999999998666666655 456777653 55667899999999853
No 372
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.10 E-value=1e-07 Score=103.72 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
...|.+.|.+|+|||+|++.|+.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~ 35 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLL 35 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHh
Confidence 46799999999999999999973
No 373
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.09 E-value=6.8e-07 Score=90.31 Aligned_cols=158 Identities=16% Similarity=0.077 Sum_probs=63.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-CcccCCCc------ccccCc-ccc-----ccCCeEEEEeCCCcccCCcc---c
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPF------CTIDPN-ENN-----KVPAFLNVVDIAGLVKGAAE---G 158 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~~~~~~~~------~T~~~~-~~~-----~~~~~i~l~DtpG~~~~~~~---~ 158 (561)
..++|+++|.+|||||||+|+|.+.. ...+..++ .|.... .+. .....+.++||||+...... -
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 45789999999999999999998863 22221111 111110 111 12346899999998421100 0
Q ss_pred ccccc-------cccc----------ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch-----hhc
Q psy17315 159 QGLGN-------AFLS----------HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS-----VDA 216 (561)
Q Consensus 159 ~~~~~-------~~l~----------~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----v~N 216 (561)
..+.. .++. ....+++++++++++. ..+..++. +.+..+... |+|
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-----------~~Ld~~~~--~~l~~l~~~~~iilV~~ 163 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-----------HGLKPLDV--AFMKAIHNKVNIVPVIA 163 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-----------SSCCHHHH--HHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-----------cCCCHHHH--HHHHHHHhcCCEEEEEE
Confidence 01111 1111 1123455666664321 00111111 122222221 899
Q ss_pred cccccCcCCCCCccHHHHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 217 KADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 217 K~D~~~~~~~~~~~~~~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
|+|+....... ............. ....+.+|+++| |.+.++..+.+..
T Consensus 164 K~Dl~~~~e~~-~~~~~~~~~~~~~-~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 164 KADTLTLKERE-RLKKRILDEIEEH-NIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp CGGGSCHHHHH-HHHHHHHHHHHHT-TCCCCCCC----------CHHHHHHH
T ss_pred eCCCCCHHHHH-HHHHHHHHHHHHc-CCeEEecCCccc-cccHHHHHHHHHh
Confidence 99997321100 0001112222222 235678899999 9999998887764
No 374
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.08 E-value=1.7e-06 Score=89.90 Aligned_cols=59 Identities=29% Similarity=0.319 Sum_probs=40.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc---CCCcccccCCccccccchhhhhHhhhcccHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF---EDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI 302 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~---~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi 302 (561)
....+.++|.+|+|||+|+|+|.+... ....++..+|||.....+. .+..+.++||||+
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~-~~~~~~liDtPG~ 222 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP-LESGATLYDTPGI 222 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE-CSTTCEEEECCSC
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE-eCCCeEEEeCCCc
Confidence 456799999999999999999998721 1233445566652222222 2335889999997
No 375
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.08 E-value=1.5e-06 Score=90.18 Aligned_cols=69 Identities=6% Similarity=0.135 Sum_probs=32.7
Q ss_pred CCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 368 WSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 368 ~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
+...+..++..+. ...|+|+|+||+|...........+.+.+++... +.+++++||+++.+ .+......
T Consensus 160 l~~~d~~~~~~l~--~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~--~i~~~~~Sa~~~~~-~e~~~~l~ 228 (361)
T 2qag_A 160 LKPLDVAFMKAIH--NKVNIVPVIAKADTLTLKERERLKKRILDEIEEH--NIKIYHLPDAESDE-DEDFKEQT 228 (361)
T ss_dssp CCHHHHHHHHHTC--S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC---CCSCCCC----------CHHHH
T ss_pred cchhHHHHHHHhc--cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC--CCCEEeCCCcCCCc-chhHHHHH
Confidence 4444555555443 4789999999995421110111223555555443 67889999999998 55544433
No 376
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.06 E-value=5.4e-07 Score=94.72 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+|.+.|..++|||+|++.|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 357999999999999999999985
No 377
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.04 E-value=1.1e-06 Score=94.08 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=34.1
Q ss_pred CCc-eEEEecCChhhhhhh--ccchHHHHHHHHHhcCC---CCeEEeechhhhhhhCCCCH
Q psy17315 384 AKT-QIYLVNLSAKDYIKK--KNKWLPKIKEWVDANDP---GATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 384 ~kP-~iiv~NK~D~d~~~~--~~~~~~~l~~~~~~~~~---~~~vi~iSA~~~~gl~~L~~ 438 (561)
+.| +|+|+||+|....+. -+...+++++++....- ..+++++||++|.|+.++.+
T Consensus 144 ~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~ 204 (458)
T 1f60_A 144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT 204 (458)
T ss_dssp TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS
T ss_pred CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc
Confidence 455 999999995421010 01233445555444311 26899999999999988754
No 378
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.04 E-value=3.2e-07 Score=101.26 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...+|.++|.+|+|||+|++.|+..
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999754
No 379
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.04 E-value=2.7e-06 Score=89.67 Aligned_cols=61 Identities=26% Similarity=0.399 Sum_probs=34.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCCCcccCCCcc------cccC-cccc-----ccCCeEEEEeCCCcccC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFC------TIDP-NENN-----KVPAFLNVVDIAGLVKG 154 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~~~~~~~~~~------T~~~-~~~~-----~~~~~i~l~DtpG~~~~ 154 (561)
...++|+++|.+|||||||+|+|+|........++. |... ..+. .....+.++||||+...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 345789999999999999999999876321111111 1110 0011 11235889999999643
No 380
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.02 E-value=2.1e-06 Score=79.87 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|++.+.+..+.....+..++++ ..+....+.+|||||..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~ 102 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-----ADYDGSGVTLVDFPGHV 102 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-----eeecCCeEEEEECCCCc
Confidence 456899999999999999999999865432212112221 11234578899999963
No 381
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.01 E-value=1.7e-06 Score=89.01 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=26.3
Q ss_pred HHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 236 MLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 236 ~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.-.......+.++|.+|+|||++++.|+...
T Consensus 48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 333344667889999999999999999998653
No 382
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.97 E-value=1.5e-06 Score=95.62 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.|.+.|..|+|||+|+++|.+..+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~ 31 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA 31 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc
Confidence 3478999999999999999999987543
No 383
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.93 E-value=2e-05 Score=81.51 Aligned_cols=61 Identities=5% Similarity=-0.034 Sum_probs=37.4
Q ss_pred HHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCH
Q psy17315 373 IEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 373 ~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~ 438 (561)
...+..... .++|+|+|+||+| +.+......+.+..+... .+.+++++|+.++.++.++..
T Consensus 193 ~~l~~~~~~-~~~~~i~V~nK~D--l~~~~~~~~~~~~~~~~~--~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 193 IKISREVDP-SGDRTFGVLTKID--LMDKGTDAVEILEGRSFK--LKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp HHHHHHSCT-TCTTEEEEEECGG--GCCTTCCSHHHHTTSSSC--CSSCCEEECCCCHHHHHTTCC
T ss_pred HHHHHHhcc-cCCCEEEEEeCCc--cCCCcccHHHHHcCcccc--ccCCeEEEEECChHHhccCCC
Confidence 444544433 4789999999994 443233333333322111 146788899999999887654
No 384
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.88 E-value=7.4e-07 Score=85.10 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=37.9
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.+|.++|+||+|. ........+.+.+.+....+..+++++||++|.|+.++.+...
T Consensus 154 ~~~~iiv~NK~Dl--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~ 209 (221)
T 2wsm_A 154 RVADLIVINKVAL--AEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLR 209 (221)
T ss_dssp HTCSEEEEECGGG--HHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred hcCCEEEEecccC--CcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence 6899999999954 3211123444555544433467899999999999888755443
No 385
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.86 E-value=8.2e-07 Score=91.20 Aligned_cols=35 Identities=40% Similarity=0.625 Sum_probs=28.8
Q ss_pred HHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 234 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 234 l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
++++.-....+..+.++|.+|+|||||++.|.+..
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45555556778899999999999999999998653
No 386
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.84 E-value=7e-05 Score=78.64 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=78.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC----C--cccCCCcccccCccc-cccCCeEEEEeCCCcccCCcccccccccccc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS----A--AAENFPFCTIDPNEN-NKVPAFLNVVDIAGLVKGAAEGQGLGNAFLS 167 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~----~--~~~~~~~~T~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~ 167 (561)
.+..++++|.+|||||||+|+|+|.. . .+.. +.+|+..... ......+.++|+||+..... ....++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~----~~~~~L~ 142 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMERHPYKHPNIPNVVFWDLPGIGSTNF----PPDTYLE 142 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEECSSCTTEEEEECCCGGGSSC----CHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecceeEEeccccccCCeeehHhhcccchHH----HHHHHHH
Confidence 34579999999999999999999943 1 1111 1122221110 11123689999999864321 1112222
Q ss_pred --ccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccC----cCCCCCccHHH----H
Q psy17315 168 --HISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKK----KMGPKKTDEGE----K 234 (561)
Q Consensus 168 --~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~----~~~~~~~~~~~----l 234 (561)
.+...|..++ +++...+ ...+ .+...+.....+ |.||.|..- ..++....... +
T Consensus 143 ~~~L~~~~~~~~-lS~G~~~-----------kqrv-~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 143 KMKFYEYDFFII-ISATRFK-----------KNDI-DIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp HTTGGGCSEEEE-EESSCCC-----------HHHH-HHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HcCCCccCCeEE-eCCCCcc-----------HHHH-HHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 1333455554 5432000 0011 112222222222 556665541 12222222222 2
Q ss_pred HHHh----hh--cCCCcEEEEEc--cCCCCHHHHHHHHHhhccC
Q psy17315 235 KMLL----GR--VGTNLKVGIVG--VPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 235 ~~l~----~~--~~~~~~i~isg--~~~~Gks~l~~~l~~~~~~ 270 (561)
..+. .. ......+.+|+ ..+.|.+.|.+.+.+..++
T Consensus 210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 2221 11 12345688899 6677899999999887543
No 387
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.84 E-value=5.7e-06 Score=88.74 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=35.2
Q ss_pred cCCc-eEEEecCChhhhhhh----ccchHHHHHHHHHhc--CC---CCeEEeechhhhhhhCCCCH
Q psy17315 383 TAKT-QIYLVNLSAKDYIKK----KNKWLPKIKEWVDAN--DP---GATIIPFSGVFEHQLVDMPD 438 (561)
Q Consensus 383 ~~kP-~iiv~NK~D~d~~~~----~~~~~~~l~~~~~~~--~~---~~~vi~iSA~~~~gl~~L~~ 438 (561)
.+.| +|+|+||+|...... -....+++.+++... +. ..+++++||++|.|+.++.+
T Consensus 179 ~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 179 QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 3667 999999996421110 012233455555432 11 46799999999999998863
No 388
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.83 E-value=2.1e-06 Score=86.75 Aligned_cols=68 Identities=6% Similarity=0.124 Sum_probs=35.3
Q ss_pred CCHHHHHHHHhhhhccCCceEEEecCChhhhhhhcc--chHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHHH
Q psy17315 368 WSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKN--KWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQ 442 (561)
Q Consensus 368 ~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~--~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~~ 442 (561)
++..+.+.+..+. ...|+++|+||.|. ....+ ...+++.+++... +.+++++||+++ +++++.....+
T Consensus 141 Ld~~~~~~l~~l~--~~~~iilV~~K~Dl--~~~~e~~~~~~~~~~~~~~~--~~~~~e~Sa~~~-~v~e~f~~l~~ 210 (301)
T 2qnr_A 141 LKPLDVAFMKAIH--NKVNIVPVIAKADT--LTLKERERLKKRILDEIEEH--NIKIYHLPDAES-DEDEDFKEQTR 210 (301)
T ss_dssp CCHHHHHHHHHHT--TTSCEEEEECCGGG--SCHHHHHHHHHHHHHHHHHT--TCCCCCCC----------CHHHHH
T ss_pred CCHHHHHHHHHHH--hcCCEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHc--CCeEEecCCccc-cccHHHHHHHH
Confidence 4444555555443 35699999999954 32111 1234555666655 678899999999 99888665433
No 389
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.83 E-value=7.9e-07 Score=97.78 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=32.8
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+.|+++|+||+|....+ .....+++.+.+. .+..+++++||++|.|+.+|.+..
T Consensus 124 ~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg--~~~~~vi~vSAktg~GI~~Lle~I 178 (600)
T 2ywe_A 124 QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLG--LDPEEAILASAKEGIGIEEILEAI 178 (600)
T ss_dssp TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSC--CCGGGCEECBTTTTBSHHHHHHHH
T ss_pred CCCCEEEEEeccCccccC-HHHHHHHHHHhhC--CCcccEEEEEeecCCCchHHHHHH
Confidence 478999999999542211 1112222322211 112358999999999998775443
No 390
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.82 E-value=6.9e-07 Score=98.35 Aligned_cols=55 Identities=9% Similarity=0.014 Sum_probs=33.8
Q ss_pred cCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHH
Q psy17315 383 TAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDE 440 (561)
Q Consensus 383 ~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~ 440 (561)
.+.|+|+|+||+|....+ .....+++.+.+.. +..+++++||++|.|+.+|.+..
T Consensus 122 ~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~--~~~~vi~vSAktg~GI~~Ll~~I 176 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVGI--DATDAVRCSAKTGVGVQDVLERL 176 (599)
T ss_dssp TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTCC--CCTTCEEECTTTCTTHHHHHHHH
T ss_pred CCCCEEEeeeccCccccc-HHHHHHHHHHHhCC--CcceEEEeecccCCCchhHHHHH
Confidence 478999999999543211 11223334333211 12358999999999988775443
No 391
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.78 E-value=1.4e-06 Score=88.57 Aligned_cols=57 Identities=21% Similarity=0.231 Sum_probs=33.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccc-cchhhhhHhhhcccHHHHHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPV-RDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~-~~~~~~~~el~l~Dt~Gi~~ 304 (561)
++.+.|..|+||++|++.+.+..+... ......|+... ..+. ....+.+|||||.++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQEr 58 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHFS-TLIDLAVMELPGQLN 58 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEEC-SSSCEEEEECCSCSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEEc-cEEEEEEEECCCchh
Confidence 378899999999999998876643221 11111121110 1111 124688999999543
No 392
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.76 E-value=3.4e-06 Score=97.83 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
..+|.+.|..++|||+|++.|++.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Confidence 457999999999999999999875
No 393
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.76 E-value=1.5e-05 Score=84.37 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=38.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC---------------CCcccCCCcccccCcccccc-------------CCeEEEEeC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS---------------SAAAENFPFCTIDPNENNKV-------------PAFLNVVDI 148 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~---------------~~~~~~~~~~T~~~~~~~~~-------------~~~i~l~Dt 148 (561)
.-|+|+|.||+|||||+|.|.|. ....-...++|+..+.|.+. ...+.++||
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 46899999999999999999874 21111122234433444221 236999999
Q ss_pred CCcccCC
Q psy17315 149 AGLVKGA 155 (561)
Q Consensus 149 pG~~~~~ 155 (561)
||+..+.
T Consensus 148 eG~~~~~ 154 (447)
T 3q5d_A 148 QGTFDSQ 154 (447)
T ss_dssp ECCCSSH
T ss_pred Ccccccc
Confidence 9997554
No 394
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.68 E-value=6.5e-05 Score=74.26 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|+|.+++..+. .++..++++ ++.. .+...+..+.+|||||+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~ 98 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVV--SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCS--CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcc--cccCCCCcceeeEEEEEeeCCeEEEEEECCCCC
Confidence 4578999999999999999999987542 222223333 2221 223334568999999973
No 395
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=97.67 E-value=6.9e-06 Score=65.17 Aligned_cols=60 Identities=27% Similarity=0.330 Sum_probs=49.9
Q ss_pred eeccccCCCceeccccCCCCCccccccccccccCCCeEEEEEechhhHHhcCCHHHHHHcCceeccCCceeecCCCEEEE
Q psy17315 468 QYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFF 547 (561)
Q Consensus 468 i~~~t~~~~ev~a~~~~~g~ta~~~a~~Ihsd~~~~fi~A~v~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~d~di~~~ 547 (561)
+.+||-. | +...+|+|+|+.|+|+.||+++++.++.|.| .| ++++.+|.+++||+|+|
T Consensus 8 i~v~tP~-G--~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV-----------------NG--~~v~L~~~L~~gd~VeI 65 (78)
T 3hvz_A 8 VFVFTPK-G--DVISLPIGSTVIDFAYAIHSAVGNRMIGAKV-----------------DG--RIVPIDYKVKTGEIIDV 65 (78)
T ss_dssp EEEECTT-S--CEEEEETTCBHHHHHHHHCHHHHHTEEEEEE-----------------TT--EEECTTCBCCTTCBEEE
T ss_pred EEEECCC-C--CEEEecCCCCHHHHHHHhhhhhhcceEEEEE-----------------CC--EEcCCCcccCCCCEEEE
Confidence 4556643 3 4456999999999999999999999999995 13 88999999999999998
Q ss_pred Ee
Q psy17315 548 KF 549 (561)
Q Consensus 548 ~~ 549 (561)
--
T Consensus 66 it 67 (78)
T 3hvz_A 66 LT 67 (78)
T ss_dssp EE
T ss_pred Ec
Confidence 53
No 396
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.60 E-value=0.00011 Score=82.67 Aligned_cols=79 Identities=18% Similarity=0.072 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC------Ccc------------cCCCcccccCccc--cc-------cCCeEEEEeCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS------AAA------------ENFPFCTIDPNEN--NK-------VPAFLNVVDIA 149 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~------~~~------------~~~~~~T~~~~~~--~~-------~~~~i~l~Dtp 149 (561)
.+|+|+|...+|||||.-+|.-.. ..+ ...-|.|...... .+ .+..|.|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 369999999999999999995211 011 0112444332111 11 13468999999
Q ss_pred CcccCCccccccccccccccccCCEEEEEeccc
Q psy17315 150 GLVKGAAEGQGLGNAFLSHISACDAIFHLCKEK 182 (561)
Q Consensus 150 G~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~ 182 (561)
|...... ....+++-+|..++|||+.
T Consensus 94 GHvDF~~-------Ev~~aLr~~DgavlvVDav 119 (709)
T 4fn5_A 94 GHVDFTI-------EVERSLRVLDGAVVVFCGT 119 (709)
T ss_dssp SCTTCHH-------HHHHHHHHCSEEEEEEETT
T ss_pred CCcccHH-------HHHHHHHHhCeEEEEEECC
Confidence 9976553 2345678899999999985
No 397
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.59 E-value=9.3e-05 Score=72.83 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=39.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-cccc-chhhhhHhhhcccHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVR-DIEIINEELRLKDVEHIE 303 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~-~~~~~~~el~l~Dt~Gi~ 303 (561)
...+|.+.|.+|+|||+|+|.+++..+. .+...++++ ++.. .+...+..+.+|||||+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~ 95 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVV--RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCS--CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCCcceeeEEEEEEECCeeEEEEECCCCC
Confidence 4578999999999999999999987531 222222332 2221 233445578999999963
No 398
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.56 E-value=5.5e-05 Score=82.60 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+.|.++|.+|+|||||+|+|++..+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 4578999999999999999999998653
No 399
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.53 E-value=0.00014 Score=76.55 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=33.7
Q ss_pred CCHHHHHHHHhhhhccCCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCC
Q psy17315 368 WSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMP 437 (561)
Q Consensus 368 ~~~~e~~~l~~~~~l~~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~ 437 (561)
++..+..++..+. ...|+|+|+||+|...........+.+.+.+... +.+++.+||+++.++.++.
T Consensus 153 L~~~d~~~lk~L~--~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~ 218 (418)
T 2qag_C 153 LKPLDIEFMKRLH--EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH--KIKIYEFPETDDEEENKLV 218 (418)
T ss_dssp CCHHHHHHHHHHT--TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHH--TCCCCCCC-----------
T ss_pred CCHHHHHHHHHHh--ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHc--CCeEEeCCCCCCcCHHHHH
Confidence 4555666666554 3789999999995421111112234555555554 6788999999988877643
No 400
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.52 E-value=6.6e-06 Score=78.71 Aligned_cols=56 Identities=9% Similarity=0.028 Sum_probs=38.3
Q ss_pred CCceEEEecCChhhhhhhccchHHHHHHHHHhcCCCCeEEeechhhhhhhCCCCHHHH
Q psy17315 384 AKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441 (561)
Q Consensus 384 ~kP~iiv~NK~D~d~~~~~~~~~~~l~~~~~~~~~~~~vi~iSA~~~~gl~~L~~~~~ 441 (561)
.+|.++|+||+|. ........+.+.+++....++.+++++||++|.|+.++.+...
T Consensus 164 ~~~~iiv~NK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 219 (226)
T 2hf9_A 164 KTADLIVINKIDL--ADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIE 219 (226)
T ss_dssp TTCSEEEEECGGG--HHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred hcCCEEEEecccc--CchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHH
Confidence 5789999999954 3211223455555555433467899999999999988755443
No 401
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.51 E-value=0.00013 Score=76.71 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=37.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCCC---ccc-CCCcccccCccccc----cCCeEEEEeCCCccc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSSA---AAE-NFPFCTIDPNENNK----VPAFLNVVDIAGLVK 153 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~~---~~~-~~~~~T~~~~~~~~----~~~~i~l~DtpG~~~ 153 (561)
++++|+|.+|+|||||+|+|+|... ... ..|+.++....... ....+.++|+||+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 3499999999999999999999752 111 13444443211111 112688999999864
No 402
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.43 E-value=0.00014 Score=76.88 Aligned_cols=84 Identities=23% Similarity=0.179 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC------C-Ccc------------------------cCCCcccccCccc------cc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS------S-AAA------------------------ENFPFCTIDPNEN------NK 138 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~------~-~~~------------------------~~~~~~T~~~~~~------~~ 138 (561)
+..|+++|.|||||||+++.|.+. . .-+ .+.+++|.++... ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999762 2 101 1111144443211 11
Q ss_pred cCCeEEEEeCCCcccCCccccccccc--cccccccCCEEEEEeccc
Q psy17315 139 VPAFLNVVDIAGLVKGAAEGQGLGNA--FLSHISACDAIFHLCKEK 182 (561)
Q Consensus 139 ~~~~i~l~DtpG~~~~~~~~~~~~~~--~l~~i~~~D~il~VvD~~ 182 (561)
....+.++||||...... .+... .+..+..+|.+++|+|+.
T Consensus 179 ~~~D~vIIDT~G~~~~~~---~l~~~l~~i~~~~~~d~vllVvda~ 221 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEK---GLLEEMKQIKEITNPDEIILVIDGT 221 (432)
T ss_dssp SSCSEEEEECCCSCSSHH---HHHHHHHHTTSSSCCSEEEEEEEGG
T ss_pred hCCCEEEEcCCCCccccH---HHHHHHHHHHHHhcCcceeEEeecc
Confidence 345799999999874321 11111 123344689999999875
No 403
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.42 E-value=5.7e-06 Score=92.95 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...|.+.|.+|+|||+|++.|+..
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~ 33 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYY 33 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999963
No 404
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.41 E-value=1.3e-05 Score=89.71 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
....+.+.|..|+|||+|++.|....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc
Confidence 45689999999999999999999764
No 405
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.38 E-value=1.4e-05 Score=86.87 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....|.+.|.+|+|||+|++.|+..
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 3468999999999999999999874
No 406
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.29 E-value=0.00022 Score=75.27 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+++|.|||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 46789999999999999999997
No 407
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.26 E-value=0.00049 Score=67.13 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....+.++|+.|+|||++.+.+...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999843
No 408
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.21 E-value=0.00022 Score=70.64 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
++++++|.+|+|||||+|+|+|..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999865
No 409
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.04 E-value=4.5e-05 Score=85.66 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...|.+.|..|+|||+|++.|...
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~ 35 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYY 35 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999999854
No 410
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.04 E-value=0.00041 Score=73.19 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..++++|.+||||||+++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999997
No 411
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.98 E-value=2.2e-05 Score=81.79 Aligned_cols=67 Identities=40% Similarity=0.736 Sum_probs=36.1
Q ss_pred HhhhcCCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc--------hhhh----------hHhhhccc
Q psy17315 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD--------IEII----------NEELRLKD 298 (561)
Q Consensus 237 l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~--------~~~~----------~~el~l~D 298 (561)
++........+.++|.+|+|||||+|.|++..+..++++++ |.+|... +... ...+.+||
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~t--Ti~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvD 92 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFC--TIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVD 92 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEE
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCcc--ccCceeEEEEECCccceeeccccCcccccccccEEEE
Confidence 44555677889999999999999999999986655555542 2233321 1110 12388999
Q ss_pred HHHHHHH
Q psy17315 299 VEHIEKE 305 (561)
Q Consensus 299 t~Gi~~~ 305 (561)
|||+.+.
T Consensus 93 tpGl~~~ 99 (396)
T 2ohf_A 93 IAGLVKG 99 (396)
T ss_dssp CCC----
T ss_pred CCCcccc
Confidence 9998653
No 412
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.94 E-value=0.00021 Score=80.38 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
...|.+.|..|+|||+|++.|...
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~ 33 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFY 33 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999754
No 413
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.82 E-value=0.00037 Score=65.58 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=42.7
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEeCCCcc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVDIAGLV 152 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~DtpG~~ 152 (561)
+..++|+|.+|||||||+|+|.+.. ......+.+|+.+..+...+....++|.+.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMT 77 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhh
Confidence 4568999999999999999999764 23456778899887654444456677776654
No 414
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.77 E-value=0.00087 Score=70.30 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.....+++.|.+|+|||||+|.|.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 345589999999999999999999965
No 415
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.74 E-value=7.5e-05 Score=78.49 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=29.4
Q ss_pred HHHHhhhcCCCcE--EEEEccCCCCHHHHHHHHHhhcc
Q psy17315 234 KKMLLGRVGTNLK--VGIVGVPNVGKSTFFNVLTKRAF 269 (561)
Q Consensus 234 l~~l~~~~~~~~~--i~isg~~~~Gks~l~~~l~~~~~ 269 (561)
+.++.-.+..+.. ++++|.+|+|||||+|.|.+..+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 5566666677777 99999999999999999999854
No 416
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.67 E-value=0.0041 Score=62.41 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=52.3
Q ss_pred cccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhccccccCcCC---------------C--
Q psy17315 167 SHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAKADSKKKMG---------------P-- 226 (561)
Q Consensus 167 ~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK~D~~~~~~---------------~-- 226 (561)
..++++|++++|+|++.++ ..++.++.+...+.....+ |+||+|+.+... .
T Consensus 75 ~~~~naD~vliV~d~~~p~---------~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~ 145 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPE---------FNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDV 145 (302)
T ss_dssp TEEESCCEEEEEECSTTTT---------CCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHhcCEEEEEEECCCCC---------CCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeE
Confidence 4579999999999876321 0122233332233332222 899999863210 0
Q ss_pred --CCccHH-HHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 227 --KKTDEG-EKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 227 --~~~~~~-~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.++... .++.+... ..+..+.++|.+|+|||||+|.|. ..
T Consensus 146 ~~~SA~~g~gi~~L~~~-l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 146 LKVSAKTGEGIDELVDY-LEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EECCTTTCTTHHHHHHH-TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEECCCCCCHHHHHhh-ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 011000 12222222 235688999999999999999999 54
No 417
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.61 E-value=0.00032 Score=72.15 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+.++|...+||||++..+.
T Consensus 30 ~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHHH
Confidence 446899999999999999999886
No 418
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.45 E-value=0.00084 Score=76.96 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
....|.++|..|+|||+|++.|...
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999875
No 419
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.39 E-value=0.0013 Score=72.71 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.++++|.+|+|||||+++|+|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
No 420
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.37 E-value=0.00086 Score=69.06 Aligned_cols=59 Identities=34% Similarity=0.616 Sum_probs=37.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccc-hhhhh-----------------HhhhcccHHHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD-IEIIN-----------------EELRLKDVEHIEK 304 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~-~~~~~-----------------~el~l~Dt~Gi~~ 304 (561)
..++.++|.+|+|||+|+|+|++..+..++++++ |++|... +.+.+ ..+.+|||||+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~t--Ti~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFC--TIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCC--CCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc--eECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 3579999999999999999999986555555542 3333322 11111 3588999999754
No 421
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.34 E-value=0.0079 Score=60.23 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=60.4
Q ss_pred CeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHhcch---hhcc
Q psy17315 141 AFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS---VDAK 217 (561)
Q Consensus 141 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---v~NK 217 (561)
..+.+||| . +.. ..+. -..++++|++++|+|++.++. .++.++.+...+.....+ |+||
T Consensus 63 ~~~~iwD~--q--er~--~~l~---~~~~~~ad~vilV~D~~~~~~---------s~~~l~~~l~~~~~~~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--L--HRK--NLLT---KPHVANVDQVILVVTVKMPET---------STYIIDKFLVLAEKNELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--C--CCS--CEET---TTTEESCCEEEEEECSSTTCC---------CHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CeEEEEEE--c--ccc--ceee---ccccccCCEEEEEEeCCCCCC---------CHHHHHHHHHHHHHCCCCEEEEEeH
Confidence 36899999 2 111 1122 245789999999998863221 122333333333322222 8999
Q ss_pred ccccCcCCC------------------CCccHH-HHHHHhhhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 218 ADSKKKMGP------------------KKTDEG-EKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 218 ~D~~~~~~~------------------~~~~~~-~l~~l~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
+|+.+.... .++... .++.+... .....+.+.|.+|+|||||+|.|.+..
T Consensus 125 ~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~-l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 125 MDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEY-LKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH-HSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHH-hcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 998643110 000000 01111111 234578899999999999999998864
No 422
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.17 E-value=0.0076 Score=61.85 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=35.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHhhcc--CCCcccccCC----ccccccchhhhhHhhhcccHHHHHH
Q psy17315 243 TNLKVGIVGVPNVGKSTFFNVLTKRAF--EDDDVTHVEG----EVNPVRDIEIINEELRLKDVEHIEK 304 (561)
Q Consensus 243 ~~~~i~isg~~~~Gks~l~~~l~~~~~--~~~~v~~~~g----t~dp~~~~~~~~~el~l~Dt~Gi~~ 304 (561)
.+..+.++|.+|+|||||+|.|.+... ..+.++..+| ++ ....+........+.||+|+.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt-~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTT-TAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccce-EEEEEEEECCCCEecCcccHHH
Confidence 456899999999999999999998753 2333433222 11 1112222222345799999854
No 423
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.13 E-value=0.0047 Score=62.09 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+..++++|.+|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345789999999999999999975
No 424
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.08 E-value=0.0013 Score=67.82 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+.++|.+++||||++..|.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999999984
No 425
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.07 E-value=0.0013 Score=68.77 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=30.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhccCCCcccccCCccccccchhh----------------------h---hHhhhcccHH
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI----------------------I---NEELRLKDVE 300 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~dp~~~~~~----------------------~---~~el~l~Dt~ 300 (561)
+|.++|.+|+|||+|+|++++.....+++++ .|.+|...+.. . ..++.+||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~--tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPF--TTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCC--cccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 6899999999999999999998533344433 22344433210 1 1368899999
Q ss_pred HHHH
Q psy17315 301 HIEK 304 (561)
Q Consensus 301 Gi~~ 304 (561)
|+.+
T Consensus 80 G~~~ 83 (397)
T 1wxq_A 80 GLVP 83 (397)
T ss_dssp ----
T ss_pred Cccc
Confidence 9854
No 426
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.07 E-value=0.0034 Score=57.72 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=27.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCCC--cccCCCcccccCc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSSA--AAENFPFCTIDPN 134 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~~--~~~~~~~~T~~~~ 134 (561)
+..++++|.+|||||||++.|.+... .....+.+|+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~ 45 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK 45 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCC
Confidence 34689999999999999999987531 1233445555543
No 427
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.05 E-value=0.002 Score=66.99 Aligned_cols=64 Identities=38% Similarity=0.634 Sum_probs=43.5
Q ss_pred hhhcCCCcEEEEEccCCCCHHHHHHHHHhhcc-CCCcccccCCccccccch-hhhh-----------------Hhhhccc
Q psy17315 238 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAF-EDDDVTHVEGEVNPVRDI-EIIN-----------------EELRLKD 298 (561)
Q Consensus 238 ~~~~~~~~~i~isg~~~~Gks~l~~~l~~~~~-~~~~v~~~~gt~dp~~~~-~~~~-----------------~el~l~D 298 (561)
+.....+..+.+.|.+|+|||||+|.|++..+ ..+++++ .|++|..+. ...+ ..+.+||
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~--tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY--ATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS--CCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCc--eeecceeeeeeeCCcchhhhhhhcccccccCcceEEEe
Confidence 44556778999999999999999999999765 4455544 234554331 1111 2367889
Q ss_pred HHHHH
Q psy17315 299 VEHIE 303 (561)
Q Consensus 299 t~Gi~ 303 (561)
|||+.
T Consensus 92 ~pGl~ 96 (392)
T 1ni3_A 92 IAGLT 96 (392)
T ss_dssp TGGGC
T ss_pred ccccc
Confidence 99863
No 428
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.02 E-value=0.0058 Score=61.17 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~ 118 (561)
+..++++|.+|+||||+++.|.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999999973
No 429
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.94 E-value=0.0056 Score=65.30 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.1
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
..+-.++|+|.+|+|||||++.|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3456899999999999999999976
No 430
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.89 E-value=0.0072 Score=61.39 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
..+--++++|.+|+||||+++.|.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999863
No 431
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.83 E-value=0.0064 Score=62.39 Aligned_cols=121 Identities=10% Similarity=0.058 Sum_probs=66.4
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhh-ccchhhHhhhHHHHHHHHHHh--cc-h--
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFI-SLNTITIWRNLKLLETRIRDL--RR-S-- 213 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~--~~-~-- 213 (561)
...+.+|||+|..... ..+....++++++++|+|.+..+.... +.......+....+...+... .. +
T Consensus 192 ~~~l~iwDt~GQe~~r-------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 192 DLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp TEEEEEEEECCSGGGG-------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred CeeEEEEeCCCchhhh-------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 4568999999975333 234556789999999999875432211 111112222223333333211 11 1
Q ss_pred -hhccccccCcCC-----------C-CCccHHHHHHHhh-----h-----cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 214 -VDAKADSKKKMG-----------P-KKTDEGEKKMLLG-----R-----VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 214 -v~NK~D~~~~~~-----------~-~~~~~~~l~~l~~-----~-----~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
++||+|+.+..- + +............ . ........+||.+|.|+..+++++.+.
T Consensus 265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 899999863210 0 0111222222111 1 123345778999999999999888765
No 432
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.79 E-value=0.0022 Score=65.09 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.9
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+.++|...+||||++..+.
T Consensus 5 ~~~~klLlLG~geSGKSTi~KQmk 28 (327)
T 3ohm_A 5 RRELKLLLLGTGESGKSTFIKQMR 28 (327)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCccHHHHHHHHH
Confidence 345789999999999999999885
No 433
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.74 E-value=0.0018 Score=66.91 Aligned_cols=32 Identities=53% Similarity=0.784 Sum_probs=26.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccCCCcccc
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~ 276 (561)
..+.++|.+|+|||+|+|.|++..+..+++++
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~ 33 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPF 33 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCG
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCC
Confidence 35899999999999999999998655555554
No 434
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.72 E-value=0.0014 Score=67.42 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
..+|+.++|..++||||++..+.
T Consensus 8 ~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 8 HIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred CceeEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999999985
No 435
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.69 E-value=0.0079 Score=56.61 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=29.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-C-cccCCCcccccCcc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-A-AAENFPFCTIDPNE 135 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~-~~~~~~~~T~~~~~ 135 (561)
.+.-++++|.+|||||||++.|.+.. . .....+.+|+.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ 49 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPRE 49 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcC
Confidence 44569999999999999999999765 2 33344455555443
No 436
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.64 E-value=0.0049 Score=56.77 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
++++++|.+|+|||||++.|+|.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999754
No 437
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.64 E-value=0.0074 Score=56.96 Aligned_cols=96 Identities=6% Similarity=-0.110 Sum_probs=56.4
Q ss_pred cccccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHHh---cc-h---hhccc-cccCcCCCCCccHH
Q psy17315 161 LGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDL---RR-S---VDAKA-DSKKKMGPKKTDEG 232 (561)
Q Consensus 161 ~~~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~-~---v~NK~-D~~~~~~~~~~~~~ 232 (561)
+...|-.++.++|+||||||+++++.. ...+.++.+...+.+- .. + ++||. |.+.++. ..
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~-------eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams-----~~ 182 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRH-------EWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-----CF 182 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCC-------CHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC-----HH
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHH-------HHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC-----HH
Confidence 333445667899999999999854321 0111111111112111 11 1 67985 6754432 23
Q ss_pred HHHHHh---hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 233 EKKMLL---GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 233 ~l~~l~---~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
++.+.+ ...+.|...++||.+|.|+.+-++||.+..
T Consensus 183 EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 183 YLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 333322 223678899999999999999999998763
No 438
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.63 E-value=0.0044 Score=58.01 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+..++++|.+|+|||||++.|.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999874
No 439
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.55 E-value=0.0087 Score=59.86 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+..++++|.+|+||||+++.|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999964
No 440
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.46 E-value=0.0047 Score=67.57 Aligned_cols=58 Identities=26% Similarity=0.231 Sum_probs=39.1
Q ss_pred CCCcEEEEEccCCCCHHHHHHHHHhhccCCCcccccCCcc-ccccchh--------hhhHhhhcccHHHHH
Q psy17315 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEV-NPVRDIE--------IINEELRLKDVEHIE 303 (561)
Q Consensus 242 ~~~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~~gt~-dp~~~~~--------~~~~el~l~Dt~Gi~ 303 (561)
....+|+++|.+|+|||+|+|.|++..... .+++|+ +...++. ..+..+.++||||+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~----~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF----SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS----CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc----ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 344679999999999999999999874211 223333 2223321 134568999999984
No 441
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.44 E-value=0.0072 Score=56.61 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=28.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC-C-cccCCCcccccCcc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS-A-AAENFPFCTIDPNE 135 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~-~-~~~~~~~~T~~~~~ 135 (561)
.+.-++++|.||||||||.+.|.... . .....+.+|+.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~ 53 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKRE 53 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCC
Confidence 45679999999999999999997643 1 22233456666543
No 442
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.42 E-value=0.015 Score=61.34 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+++|.+||||||+...|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999997
No 443
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.36 E-value=0.0077 Score=55.95 Aligned_cols=49 Identities=22% Similarity=0.178 Sum_probs=33.8
Q ss_pred EEEEEcCCCCHHHHHHHHhcCC--CcccCCCcccccCccccccCCeEEEEe
Q psy17315 99 VGIVGVPNVGKSTFFNVLTKSS--AAAENFPFCTIDPNENNKVPAFLNVVD 147 (561)
Q Consensus 99 v~ivG~pnvGKStlin~L~~~~--~~~~~~~~~T~~~~~~~~~~~~i~l~D 147 (561)
|.|+|.+|||||||++.|.... .-.-..+.||+.+..+...+....+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs 54 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVS 54 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeec
Confidence 7899999999999999998654 223456788887765433333344443
No 444
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.32 E-value=0.012 Score=60.54 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=62.6
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhh-hccchhhHhhhHHHHHHHHHHh--cc-h--
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFF-ISLNTITIWRNLKLLETRIRDL--RR-S-- 213 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~--~~-~-- 213 (561)
...+.+|||||..... ..+....++++++++|+|.+..+... .+.......+....+...+... .. +
T Consensus 200 ~~~l~i~Dt~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp TEEEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred CeEEEEEeccchhhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 4578999999985433 23445668999999999987533221 1111222233333333333221 11 1
Q ss_pred -hhccccccCcC--------------CCCCccHHHHHH-H----hhh-----cCCCcEEEEEccCCCCHHHHHHHHHhh
Q psy17315 214 -VDAKADSKKKM--------------GPKKTDEGEKKM-L----LGR-----VGTNLKVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 214 -v~NK~D~~~~~--------------~~~~~~~~~l~~-l----~~~-----~~~~~~i~isg~~~~Gks~l~~~l~~~ 267 (561)
++||+|+.+.. +.. ........ + ... ......+.+||.++.|+..+++++.+.
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~-~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDP-HCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCT-TCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCC-CCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 89999986422 110 11222211 1 111 112345678999999999888888764
No 445
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.27 E-value=0.011 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+..++++|.||+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999999875
No 446
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.26 E-value=0.0048 Score=68.48 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q psy17315 246 KVGIVGVPNVGKSTFFNVLTKR 267 (561)
Q Consensus 246 ~i~isg~~~~Gks~l~~~l~~~ 267 (561)
.|+++|...+||+||...|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~ 25 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYN 25 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999654
No 447
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.20 E-value=0.0082 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~ 120 (561)
-++++|.+|+|||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37999999999999999999754
No 448
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.09 E-value=0.0061 Score=62.12 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
+..|+.++|...+||||++..+.
T Consensus 4 ~~~klLLLG~geSGKSTi~KQmk 26 (340)
T 4fid_A 4 KPITVMLLGSGESGKSTIAKQLK 26 (340)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CcceEEEECCCCCcHHHHHHHHH
Confidence 45789999999999999999885
No 449
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.05 E-value=0.0047 Score=60.89 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=33.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHhhccCCCccccc----CCcc--cccc-chhhhh--HhhhcccHHHH
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV----EGEV--NPVR-DIEIIN--EELRLKDVEHI 302 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~~~~~~~~v~~~----~gt~--dp~~-~~~~~~--~el~l~Dt~Gi 302 (561)
...|++.|.+|+|||+|+|+|.+.......++.. ..|+ +... .+...+ ..+.+|||||+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence 3579999999999999999998775444333110 1111 1111 122222 26889999996
No 450
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=94.99 E-value=0.035 Score=54.92 Aligned_cols=94 Identities=7% Similarity=-0.104 Sum_probs=56.8
Q ss_pred cccccccccCCEEEEEecccccchhhhccchhhHhhhHHHHHHHHHH---hc-ch---hhcc-ccccCcCCCCCccHHHH
Q psy17315 163 NAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRD---LR-RS---VDAK-ADSKKKMGPKKTDEGEK 234 (561)
Q Consensus 163 ~~~l~~i~~~D~il~VvD~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~-~~---v~NK-~D~~~~~~~~~~~~~~l 234 (561)
..+-.+..++|+||+|||+++++... ..+.++.+...+.+ +. .+ ++|| .|.+.++. ..++
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRle-------ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams-----~~EI 269 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHE-------WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-----CFYL 269 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCC-------HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-----HHHH
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHH-------HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC-----HHHH
Confidence 33445678899999999998654311 11111111122211 11 12 6786 57864433 2333
Q ss_pred HHHh---hhcCCCcEEEEEccCCCCHHHHHHHHHhhc
Q psy17315 235 KMLL---GRVGTNLKVGIVGVPNVGKSTFFNVLTKRA 268 (561)
Q Consensus 235 ~~l~---~~~~~~~~i~isg~~~~Gks~l~~~l~~~~ 268 (561)
.+.+ .....+...++||.+|.|+.+-++||.+..
T Consensus 270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 3322 223678899999999999999999999863
No 451
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.97 E-value=0.0051 Score=64.16 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.5
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..|+.++|...+||||++..+.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 456899999999999999999985
No 452
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.82 E-value=0.016 Score=55.20 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.0
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+--++|+|.+|||||||++.|.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 345679999999999999999999864
No 453
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.81 E-value=0.025 Score=59.37 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+..++++|.+|+||||++..|.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999974
No 454
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=94.75 E-value=0.019 Score=62.37 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHh
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~ 266 (561)
..|+|+|..++||+||...|.-
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~ 53 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLL 53 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHH
Confidence 5699999999999999999964
No 455
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.74 E-value=0.015 Score=53.96 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+.-++++|.+|+|||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 456999999999999999999875
No 456
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.72 E-value=0.014 Score=54.75 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+..++|+|.+|+|||||++.|.+.-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998754
No 457
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.59 E-value=0.03 Score=57.34 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccc
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKL 183 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~ 183 (561)
...+.+|||+|..... ..+....++++++++|+|.+.
T Consensus 182 ~v~l~iwDtaGQe~~r-------~~~~~y~~~~~~iI~v~dis~ 218 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNER-------RKWIHLFEGVTAVIFCAAISE 218 (354)
T ss_dssp --EEEEEEECCSTTGG-------GGTGGGCTTEEEEEEEEEGGG
T ss_pred ceeeEEEECCCchhhh-------HHHHHHhCCCCEEEEEEECcc
Confidence 3469999999985433 233456789999999998763
No 458
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.54 E-value=0.038 Score=58.24 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHh
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~ 117 (561)
.-|+|+|.+++|||+|+|.|.
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 467899999999999999775
No 459
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.53 E-value=0.029 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=20.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+..++++|.+|+||||+...|.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999999975
No 460
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.46 E-value=0.019 Score=53.91 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+--++++|.+|+|||||++.|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44569999999999999999999754
No 461
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.39 E-value=0.022 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+..++|+|.+|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999874
No 462
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.34 E-value=0.018 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~ 119 (561)
..|+++|.||+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 463
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.33 E-value=0.022 Score=52.92 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+..++++|.+|+||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999998754
No 464
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.27 E-value=0.019 Score=54.55 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++|+|.+|+|||||++.|.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34569999999999999999999743
No 465
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.09 E-value=0.026 Score=53.80 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=16.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh-cCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT-KSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~-~~~ 120 (561)
.+.-++++|.+|+|||||++.|. +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34579999999999999999999 754
No 466
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.06 E-value=0.025 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+..++++|.+|+|||||.+.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999854
No 467
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.00 E-value=0.014 Score=62.57 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHh
Q psy17315 244 NLKVGIVGVPNVGKSTFFNVLTK 266 (561)
Q Consensus 244 ~~~i~isg~~~~Gks~l~~~l~~ 266 (561)
...|.++|.+|+||||+.+.|+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999994
No 468
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.98 E-value=0.031 Score=53.31 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999999754
No 469
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.96 E-value=0.028 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.2
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHh
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~ 117 (561)
.+..++++|.||+|||||++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 470
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.87 E-value=0.031 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44579999999999999999999764
No 471
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.75 E-value=0.026 Score=51.79 Aligned_cols=21 Identities=38% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhc
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~ 118 (561)
-++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999975
No 472
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.75 E-value=0.035 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
+..++++|.||+||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457999999999999999999753
No 473
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.72 E-value=0.033 Score=55.81 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
...+-.++|+|.+|+|||||++.|.|-
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 456678999999999999999999875
No 474
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.72 E-value=0.027 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=19.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHh
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLT 117 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~ 117 (561)
+--++++|.+|+|||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4468999999999999999865
No 475
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.71 E-value=0.034 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
+.|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 476
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.67 E-value=0.046 Score=50.94 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 93 VGTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 93 ~~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
...+..|+|+|.||+||||+.+.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999864
No 477
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.66 E-value=0.029 Score=54.22 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
-.++++|.+|+|||||++.|+|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
No 478
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.66 E-value=0.035 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45579999999999999999999764
No 479
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.52 E-value=0.034 Score=52.47 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
++.|+++|.||+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 480
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.52 E-value=0.037 Score=53.46 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+-.++++|.+|+|||||++.|+|-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 481
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.52 E-value=0.13 Score=50.47 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=22.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHhhccC
Q psy17315 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270 (561)
Q Consensus 245 ~~i~isg~~~~Gks~l~~~l~~~~~~ 270 (561)
..+++.|.+|+|||||+|.|++....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46899999999999999999997643
No 482
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.51 E-value=0.031 Score=52.98 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
+-.++++|..|+|||||++.|+|-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
No 483
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.45 E-value=0.04 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999999864
No 484
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.44 E-value=0.038 Score=51.35 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
.+..|+++|.+|+||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 485
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.38 E-value=0.039 Score=53.79 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999764
No 486
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.36 E-value=0.04 Score=53.42 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999864
No 487
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.34 E-value=0.032 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 98 KVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 98 ~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.++++|.+|+|||||++.|++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998754
No 488
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.32 E-value=0.043 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhc
Q psy17315 97 LKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L~~ 118 (561)
..|.++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999985
No 489
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.32 E-value=0.042 Score=52.63 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|..|+|||||++.|+|-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999864
No 490
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.29 E-value=0.041 Score=54.28 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++|+|.+|+|||||++.|+|-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568999999999999999999864
No 491
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.29 E-value=0.044 Score=53.59 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
..+-.++++|.+|+|||||++.|+|-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345579999999999999999999753
No 492
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.28 E-value=0.044 Score=53.71 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45579999999999999999999764
No 493
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.25 E-value=0.041 Score=49.16 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=18.7
Q ss_pred cEEEEEEcCCCCHHHHHHHH
Q psy17315 97 LKVGIVGVPNVGKSTFFNVL 116 (561)
Q Consensus 97 ~~v~ivG~pnvGKStlin~L 116 (561)
+-|+++|.||+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 494
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.24 E-value=0.042 Score=53.90 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34579999999999999999999864
No 495
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=93.22 E-value=0.062 Score=54.35 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=44.0
Q ss_pred CCeEEEEeCCCcccCCccccccccccccccccCCEEEEEecccccchhhhc-cchhhHhhhHHHHHHHHHHhc-ch----
Q psy17315 140 PAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFIS-LNTITIWRNLKLLETRIRDLR-RS---- 213 (561)
Q Consensus 140 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~i~~~D~il~VvD~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~-~~---- 213 (561)
...+.+|||+|..... ..+....++++++++|+|.+.-+....+ .+.....+.+..+...+.... ..
T Consensus 166 ~v~l~iwDtgGQe~~R-------~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ii 238 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSER-------RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 238 (327)
T ss_dssp TEEEEEEEECCSHHHH-------TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred ceeeEEEEcCCchhHH-------HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEE
Confidence 3568999999985433 2345567999999999987643332211 122222333334433332211 11
Q ss_pred -hhccccccC
Q psy17315 214 -VDAKADSKK 222 (561)
Q Consensus 214 -v~NK~D~~~ 222 (561)
++||+|+.+
T Consensus 239 L~~NK~DL~~ 248 (327)
T 3ohm_A 239 LFLNKKDLLE 248 (327)
T ss_dssp EEEECHHHHH
T ss_pred EEEECchhhh
Confidence 899999874
No 496
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.22 E-value=0.045 Score=53.36 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|..|+|||||++.|+|-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999864
No 497
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.18 E-value=0.054 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhc
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTK 118 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~ 118 (561)
.+..|.++|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999974
No 498
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.18 E-value=0.042 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 96 NLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 96 ~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
++.|+++|.||+||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 499
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.16 E-value=0.048 Score=53.53 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHhcC
Q psy17315 94 GTNLKVGIVGVPNVGKSTFFNVLTKS 119 (561)
Q Consensus 94 ~~~~~v~ivG~pnvGKStlin~L~~~ 119 (561)
..+-.++++|.+|+|||||++.|+|-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557999999999999999999985
No 500
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.12 E-value=0.046 Score=53.09 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhcCC
Q psy17315 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120 (561)
Q Consensus 95 ~~~~v~ivG~pnvGKStlin~L~~~~ 120 (561)
.+-.++++|.+|+|||||++.|+|-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568999999999999999999864
Done!