RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17315
(561 letters)
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 414 bits (1068), Expect = e-142
Identities = 180/296 (60%), Positives = 216/296 (72%), Gaps = 26/296 (8%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQR-GDKKLKPEYV 325
RAFEDDD+THVEG V+P+RDIEII+EEL+LKD E I I+K+EK+ R GDKKLKPEY
Sbjct: 125 RAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEY- 183
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHAR-YGDWSNADIEHLNKLNLLTA 384
D + K+K++V + K+ R Y DW++ +IE LNK LT+
Sbjct: 184 --------------------DIMCKVKSWVID-QKKPVRFYHDWNDKEIEVLNKHLFLTS 222
Query: 385 KTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY 444
K +YLVNLS KDYI+KKNKWL KIKEWVD DPGA +IPFSG E +L ++ +ERQ+Y
Sbjct: 223 KPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKY 282
Query: 445 LDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGF 504
L+ S L KII G+ +LQL+YFFTAG DEV+AWTI+KGTKAPQAAG+IHTDFEKGF
Sbjct: 283 LEANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGF 342
Query: 505 IMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNAGAGLNPKKK 560
IMAEVM ++DFKE GSE A +AAGKYRQQGR Y VEDGDIIFFKFN PKKK
Sbjct: 343 IMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQ--PKKK 396
Score = 191 bits (488), Expect = 1e-55
Identities = 81/124 (65%), Positives = 90/124 (72%), Gaps = 20/124 (16%)
Query: 76 MGPKKTDEGEK-KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN 134
M PKK +G K ++GR GT+LK+GIVG+PNVGKSTFFNVLT S A+AENFPFCTIDPN
Sbjct: 1 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN 60
Query: 135 E-------------------NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175
E +K+PAFLNVVDIAGLVKGA GQGLGNAFLSHISACD I
Sbjct: 61 ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGI 120
Query: 176 FHLC 179
FHL
Sbjct: 121 FHLT 124
Score = 79.8 bits (198), Expect = 3e-16
Identities = 29/44 (65%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 224 MGPKKTDEGEK-KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 266
M PKK +G K ++GR GT+LK+GIVG+PNVGKSTFFNVLT
Sbjct: 1 MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTN 44
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 404 bits (1042), Expect = e-138
Identities = 128/289 (44%), Positives = 182/289 (62%), Gaps = 27/289 (9%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGD-----KKLK 321
RAF+D ++ HVEG+V+P+RD+ II +EL +KD E +EK + + K+ RG K K
Sbjct: 124 RAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKK 183
Query: 322 PEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNL 381
E + K+ ++ E K+ R GDWSN ++E +N L L
Sbjct: 184 EEQ---------------------AIIEKVYQYLTET-KQPIRKGDWSNREVEIINSLYL 221
Query: 382 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDER 441
LTAK IYLVN+S +D++++KNK+LPKIK+W+D N PG T+IP S FE +L + ++E
Sbjct: 222 LTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEA 281
Query: 442 QRYLDEQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFE 501
+ S+L KII GY +L L +FT G+DEV++WTI+KGTKAPQAAG IHTDFE
Sbjct: 282 IEECKKLNTKSMLPKIIVTGYNALNLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFE 341
Query: 502 KGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 550
K F++ E+MH+ D ++ +E ACRAAGKY +G+ Y +E GDI +K
Sbjct: 342 KAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWKAG 390
Score = 186 bits (476), Expect = 6e-54
Identities = 63/124 (50%), Positives = 74/124 (59%), Gaps = 21/124 (16%)
Query: 76 MGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPN 134
M PKK E K+ GR G NLK GIVG+PNVGKSTFF +TKS N+P+ TIDP
Sbjct: 1 MPPKKQQE-VVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE 59
Query: 135 E-------------------NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI 175
E ++VPAFL V DIAGL KGA+ G GLGNAFLSH+ A DAI
Sbjct: 60 EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAI 119
Query: 176 FHLC 179
+ +
Sbjct: 120 YQVV 123
Score = 80.2 bits (199), Expect = 2e-16
Identities = 27/43 (62%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 224 MGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 266
M PKK E K+ GR G NLK GIVG+PNVGKSTFF +TK
Sbjct: 1 MPPKKQQE-VVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITK 42
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 302 bits (777), Expect = 1e-98
Identities = 95/285 (33%), Positives = 155/285 (54%), Gaps = 28/285 (9%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326
R FE+DD+ HV G+++P+ DI+ IN EL L D++ E+ I +++K + GDK+ K E
Sbjct: 105 RCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL-- 162
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
+ KI + R +++ + N LT K
Sbjct: 163 -------------------SVMEKILPVLENA--GMIRSVGLDKEELQAIKSYNFLTLKP 201
Query: 387 QIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446
+Y+ N++ + + N +L +++E A GA ++P E ++ ++ D+E+ +L
Sbjct: 202 TMYIANVNEDGF--ENNPYLDRVREI--AAKEGAVVVPVCAAIESEIAELDDEEKVEFLQ 257
Query: 447 EQKAT-SVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFI 505
+ L+++I GY L LQ +FTAG EV+AWT+ G AP+AA IHTDFEKGFI
Sbjct: 258 DLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFI 317
Query: 506 MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFN 550
AEV+ ++DF + E + AGK+R +G+ Y V+DGD++ F+FN
Sbjct: 318 RAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFN 362
Score = 143 bits (363), Expect = 3e-38
Identities = 48/100 (48%), Positives = 59/100 (59%), Gaps = 19/100 (19%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-------------------NN 137
K GIVG+PNVGKST FN LTK+ A N+PFCTI+PN
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 138 KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
+P + VDIAGLV GA++G+GLGN FL++I DAI H
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGH 102
Score = 50.9 bits (123), Expect = 5e-07
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
K GIVG+PNVGKST FN LTK
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTK 24
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 298 bits (766), Expect = 6e-97
Identities = 97/287 (33%), Positives = 150/287 (52%), Gaps = 28/287 (9%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326
R F D DV HV G V+P+ D E++ EL L D+ +E+ + ++ K R D++ P
Sbjct: 108 RCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEA-RADRERLPLL-- 164
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
+A + + EG + AR S A L + LLTAK
Sbjct: 165 -------------------EAAEGLYVHLQEG--KPARTFPPSEAVARFLKETPLLTAKP 203
Query: 387 QIYLVNLSAKDYI-KKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYL 445
IY+ N++ +D + N + ++ A + GA ++ S E +L ++ +E + L
Sbjct: 204 VIYVANVAEEDLPDGRGNPQVEAVRRK--ALEEGAEVVVVSARLEAELAELSGEEARELL 261
Query: 446 DEQKAT-SVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGF 504
S L ++ GY++L L FFTAG+ EV+AWT+++GTKAP+AAG IH+D E+GF
Sbjct: 262 AAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGF 321
Query: 505 IMAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTVEDGDIIFFKFNA 551
I AEV+ +D E G A + G R +G+ Y V+DGD+I+ FNA
Sbjct: 322 IRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368
Score = 140 bits (356), Expect = 3e-37
Identities = 50/104 (48%), Positives = 59/104 (56%), Gaps = 23/104 (22%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN---------------------- 134
L VGIVG+PNVGKST FN LT+++A A N+PF TID N
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 135 -ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
VP + VDIAGLVKGA +G+GLGN FL+HI AI H
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAH 105
Score = 51.3 bits (124), Expect = 4e-07
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
L VGIVG+PNVGKST FN LT+
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTR 23
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 184 bits (470), Expect = 4e-53
Identities = 50/320 (15%), Positives = 88/320 (27%), Gaps = 76/320 (23%)
Query: 267 RAFEDDDVT-HVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYV 325
A D +PV DIE + E+ + K +K K ++ KL+
Sbjct: 110 DATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIA 169
Query: 326 SEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAK 385
+ + + +A WS D+ K
Sbjct: 170 EH----LSGIGVNENDVW--------EAMHKLNLP--EDPTKWSQDDLLAFASEIRRVNK 215
Query: 386 TQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY- 444
+ N + ++ + ++ + G +IP S E L Y
Sbjct: 216 PMVIAANKADAA----SDEQIKRLVR--EEEKRGYIVIPTSAAAELTLRKAAKAGFIEYI 269
Query: 445 ---------------------------LDEQKATSVLDKIITQGYKSLQLQYFFTA---- 473
LD +T V + I + L+L +
Sbjct: 270 PGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDEN 329
Query: 474 ------GQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAA 527
G + ++KG+ A ++HTD KGF+ A A
Sbjct: 330 KLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI-----------------NA 372
Query: 528 GKYRQQGRAYTVEDGDIIFF 547
R+ G Y ++ DI+
Sbjct: 373 RTKRRVGEDYELQFNDIVKI 392
Score = 137 bits (347), Expect = 9e-36
Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 26/107 (24%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN---------------------- 134
+++G+VG PNVGKSTFF+ T N+PF TI+ N
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 135 ----ENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFH 177
N + +VD+AGLV GA EG+GLGN FL + A+ H
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIH 107
Score = 51.1 bits (123), Expect = 4e-07
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
+++G+VG PNVGKSTFF+ T
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATL 22
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 79.6 bits (197), Expect = 2e-16
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 27/111 (24%)
Query: 83 EGEKKMLLGRVGTNLK----VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK 138
G+++ ++ LK VG+VG P+VGKST +V++ + ++ F T+ PN
Sbjct: 145 PGKERYIVLE----LKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN---- 196
Query: 139 VPAFLNVV-----------DIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
L +V D+ GL++GA +G GLG+ FL HI I H+
Sbjct: 197 ----LGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHV 243
Score = 37.6 bits (88), Expect = 0.008
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
Query: 231 EGEKKMLLGRVGTNLK----VGIVGVPNVGKSTFFNVLTK 266
G+++ ++ LK VG+VG P+VGKST +V++
Sbjct: 145 PGKERYIVLE----LKVLADVGLVGFPSVGKSTLLSVVSS 180
Score = 30.2 bits (69), Expect = 1.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 273 DVTHVEGEVNPVRDIEIINEELRLKDVEHIEKE----INKI 309
D++ +EG +P D IN+EL ++ E+ NK+
Sbjct: 245 DMSGLEGR-DPYDDYLTINQELSEYNLRLTERPQIIVANKM 284
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 78.7 bits (195), Expect = 8e-16
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 27/95 (28%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAA----AENFPFCTIDPNENNKVPAFLNVV-------- 146
VG+VG PN GKS+ + + A A +PF T+ PN L VV
Sbjct: 160 VGLVGYPNAGKSSLLAAM---TRAHPKIA-PYPFTTLSPN--------LGVVEVSEEERF 207
Query: 147 ---DIAGLVKGAAEGQGLGNAFLSHISACDAIFHL 178
DI G+++GA+EG+GLG FL HI+ + ++
Sbjct: 208 TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYV 242
Score = 37.1 bits (87), Expect = 0.013
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 247 VGIVGVPNVGKSTFFNVLTK 266
VG+VG PN GKS+ +T+
Sbjct: 160 VGLVGYPNAGKSSLLAAMTR 179
Score = 27.9 bits (63), Expect = 9.2
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 282 NPVRDIEIINEELRLKDVEHIEKE----INKIEKLVQRGDKKLKPEYVSEVW 329
P++ +E + +E+ D + + +NK++ L + K L E
Sbjct: 248 EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGL 299
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 63.2 bits (154), Expect = 2e-11
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLN--VVDIAGLVKGAA 156
+ + G PNVGKS+F N++++++ +++ F T + + ++D GL+ A
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF 91
Query: 157 EGQGLGN----AFLSHISAC 172
E + L+HI+
Sbjct: 92 ENRNTIEMTTITALAHINGV 111
Score = 37.4 bits (87), Expect = 0.007
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 247 VGIVGVPNVGKSTFFNVLTK 266
+ + G PNVGKS+F N++++
Sbjct: 32 IILSGAPNVGKSSFMNIVSR 51
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 5e-11
Identities = 89/601 (14%), Positives = 155/601 (25%), Gaps = 211/601 (35%)
Query: 25 YESTNPKIPRSNQILISDKPTWGDGDG-PKAPKRRKQHLSDKLRPKADSKKKMGPKKTDE 83
E P + I D+ + D K R Q KLR
Sbjct: 100 TEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPY-LKLR---------------- 141
Query: 84 GEKKMLLG-RVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAE----NFPF---------C 129
+ LL R N V I GV GK+ + + F C
Sbjct: 142 ---QALLELRPAKN--VLIDGVLGSGKT----WVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 130 TIDPNENNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFF- 188
+ L +D + H S H + +LR +
Sbjct: 193 NSPETVLEMLQKLLYQID------------PNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 189 ----ISL------NTITIWR--NLK---LLETRIRDLRRSVDAKADSKKKMGPKKT--DE 231
L W NL LL TR + + + A + +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 232 GEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIIN 291
E K LL + + + D+ NP R + II
Sbjct: 301 DEVKSLLLKY-LDCRP------------------------QDLPREVLTTNPRR-LSIIA 334
Query: 292 EELRLKDVEHIE--KEIN--KIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDA 347
E +R + + K +N K+ +++ L+P +++ +F +
Sbjct: 335 ESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPS-------- 384
Query: 348 LVKIKAFVCEGDKRHARYGDWSNAD-------IEHLNKLNLL---TAKTQIYLVNLSAKD 397
I + W + + L+K +L+ ++ I + ++
Sbjct: 385 -AHIPTILLS------LI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI---- 431
Query: 398 YIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQ-LVDMPDDERQRYLDEQKATSVLDK 456
Y++ K K N+ H+ +VD + + + + LD
Sbjct: 432 YLELKVK---------LENEYAL----------HRSIVDH-YNIPKTFDSDDLIPPYLD- 470
Query: 457 IITQGYKSLQLQYFF--------TAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAE 508
QYF+ E + T + DF F+ +
Sbjct: 471 -----------QYFYSHIGHHLKNIEHPE-------RMTLFR----MVFLDF--RFLEQK 506
Query: 509 VMHFDDFKEHGSEAACRAAG----------KYRQ----QGRAYTVEDGDIIFFKFNAGAG 554
+ H A A+G Y+ Y I+ F
Sbjct: 507 IRH--------DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 555 L 555
L
Sbjct: 559 L 559
Score = 40.2 bits (93), Expect = 0.002
Identities = 36/260 (13%), Positives = 82/260 (31%), Gaps = 70/260 (26%)
Query: 268 AFEDD-DVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEK-------LVQRGDKK 319
AF D+ D V+ + L ++++HI + + L+ + ++
Sbjct: 28 AFVDNFDCKDVQDMPKSI---------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 320 LKPEYVSEVW---FSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRH---ARYGDWSNADI 373
++ ++V EV + F+ IK + ++ + D+ + + ++ + +
Sbjct: 79 VQ-KFVEEVLRINYKFLMSPIKTEQRQPSM---MTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 374 EHLNKLN--LLTAKTQIY-------------LVNLSAKDY-IKKKNK----WLPKIKEWV 413
+ KL LL + + Y ++ K WL +K
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKN-- 191
Query: 414 DANDPGATIIPFSGVFEH------QLVDMPDDERQRYLDEQKATSVLDKIITQGYKS--L 465
N P + + D + + R Q L + ++ Y++ L
Sbjct: 192 -CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLL 248
Query: 466 QLQYFFTAGQDEVK-AWTIQ 484
L V+ A
Sbjct: 249 VL--------LNVQNAKAWN 260
Score = 35.2 bits (80), Expect = 0.061
Identities = 46/311 (14%), Positives = 95/311 (30%), Gaps = 82/311 (26%)
Query: 207 IRDLRRSVDAKADSKKKMGPKKTDEGEKKML--LGRVGTNLK---VGIVGVPNVGKSTFF 261
++D+ +S+ +K + + K G ++ L + V V N F
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---F- 93
Query: 262 NVLTKRAFEDDDVTHVEGEVNPVRDIEIINEEL-RL-KDVEHIEK-EINKIEKL--VQRG 316
+++ E P + E+ RL D + K +++++ +++
Sbjct: 94 -LMSPIKTEQRQ---------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 317 DKKLKPEYVSEVWFSFIYLFIKNGHIGH-EDALVKIKAFVCEGDKRHARYGD---W---- 368
+L+P + I +G +G + + VC K + W
Sbjct: 144 LLELRPA---------KNVLI-DGVLGSGKTWVA---LDVCLSYKVQCKMDFKIFWLNLK 190
Query: 369 ----SNADIEHLNKLNLLTAK---------TQIYLVNLSAKDYIKK--KNK--------- 404
+E L KL + I L S + +++ K+K
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 405 ---WLPKIKEWVDANDPGATII---PFSGVFE----HQLVDMPDDERQRYLDEQKATSVL 454
K +A + I+ F V + + D L + S+L
Sbjct: 251 LNVQNAKA---WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 455 DKIITQGYKSL 465
K + + L
Sbjct: 308 LKYLDCRPQDL 318
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 58.3 bits (141), Expect = 2e-09
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLN--VVDIAGLVKGAA 156
V I G PNVGKST LT + ++PF T N + ++D GL+
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229
Query: 157 EGQGLG--NAFLSHISACDAIFHL 178
+ A L+ + I ++
Sbjct: 230 SERNEIEKQAILALRYLGNLIIYI 253
Score = 32.5 bits (74), Expect = 0.32
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 247 VGIVGVPNVGKSTFFNVLTK 266
V I G PNVGKST LT
Sbjct: 170 VVIAGHPNVGKSTLLKALTT 189
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 48.5 bits (116), Expect = 2e-06
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 26/115 (22%)
Query: 27 STNPKIPRSNQILISDKPTW--------GDGDGPKAPKRRKQHLSDKLRP--KADSKKKM 76
S NP I ++ +KP D ++ K+H ++ +S
Sbjct: 39 SRNPMIED----ILKNKPRIMLLNKADKAD---AAVTQQWKEHFENQGIRSLSINSVNGQ 91
Query: 77 GPKK---------TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA 122
G + ++ ++ G ++ I+G+PNVGKST N L K + A
Sbjct: 92 GLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIA 146
Score = 45.4 bits (108), Expect = 3e-05
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 222 KKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267
K++ +K D K G ++ I+G+PNVGKST N L K+
Sbjct: 101 KEILQEKFDRMRAK---GVKPRAIRALIIGIPNVGKSTLINRLAKK 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 48.4 bits (116), Expect = 3e-06
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP 133
+GIVG N GK++ FN LT + + F T+ P
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP 216
Score = 35.7 bits (83), Expect = 0.033
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 247 VGIVGVPNVGKSTFFNVLTK 266
+GIVG N GK++ FN LT
Sbjct: 182 IGIVGYTNSGKTSLFNSLTG 201
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 44.8 bits (107), Expect = 1e-05
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKR 267
KV IVG PNVGKS+ FN L K+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKK 24
Score = 44.4 bits (106), Expect = 1e-05
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAA 122
KV IVG PNVGKS+ FN L K +A
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSA 27
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 44.6 bits (106), Expect = 2e-05
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE 135
+ G NVGKST LT P T E
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE 40
Score = 40.0 bits (94), Expect = 6e-04
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKR 267
+ G NVGKST LT +
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTGK 24
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 45.3 bits (108), Expect = 2e-05
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 86 KKMLLGRVGTN--LKVGIVGVPNVGKSTFFNVLTKSSAA 122
+K+LL ++ + +V IVGVPN GKST N L A+
Sbjct: 87 RKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRAS 125
Score = 44.6 bits (106), Expect = 3e-05
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 234 KKMLLGRVGTN--LKVGIVGVPNVGKSTFFNVLTKR 267
+K+LL ++ + +V IVGVPN GKST N L +
Sbjct: 87 RKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGK 122
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-05
Identities = 41/279 (14%), Positives = 83/279 (29%), Gaps = 99/279 (35%)
Query: 311 KLVQRGDKKLKPEYVSEVWFSFIYLFIKN---------GHIGHE--------------DA 347
+ R D K Y FS + + I N G G D
Sbjct: 1644 DVWNRADNHFKDTY----GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 348 LVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKTQ--IYLVNLSAKDYIKKKNKW 405
+K + E ++ Y + ++ L+ T TQ + L+ +A + +K K
Sbjct: 1700 KLKTEKIFKEINEHSTSY-TF-RSEKGLLS----ATQFTQPALTLMEKAAFEDLKSKGL- 1752
Query: 406 LPKIKEWVDANDP------G--------ATIIPFS---------GVFEHQLVDMPDDE-- 440
+ A+ G A ++ G+ V P DE
Sbjct: 1753 -------IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV--PRDELG 1803
Query: 441 RQRY-------------LDEQKATSVLDKIITQGYKSLQL--------QYFFTAGQDEVK 479
R Y ++ V++++ + +++ QY AG +++
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV-AAG--DLR 1860
Query: 480 AWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEH 518
A + T D + + + + ++ + H
Sbjct: 1861 A--LDTVTNVLNFIKLQKIDIIE---LQKSLSLEEVEGH 1894
Score = 40.4 bits (94), Expect = 0.002
Identities = 56/366 (15%), Positives = 103/366 (28%), Gaps = 136/366 (37%)
Query: 154 GAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRS 213
G+ E QG+G A +++ ++ + S+ I + +
Sbjct: 1625 GSQE-QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI------------VIN---- 1667
Query: 214 VDAKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDD 273
P + G GK N + FE
Sbjct: 1668 -----------NPV-----NLTIHFGGEK-------------GKRIREN-YSAMIFETI- 1696
Query: 274 VTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINK---------------IEKLVQRGDK 318
V+G++ + + INE + ++ E L +G
Sbjct: 1697 ---VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG-- 1751
Query: 319 KLKP-----------EY-----VSEVWFSFIYLFIKNGHIGHEDA--LVKI----KAFVC 356
L P EY +++V S E +V
Sbjct: 1752 -LIPADATFAGHSLGEYAALASLADV-MSI------------ESLVEVVFYRGMTMQVAV 1797
Query: 357 EGDKRHARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDAN 416
D+ R SN + +N + + +Q L + + + K+ WL +I N
Sbjct: 1798 PRDE-LGR----SNYGMIAINPGRVAASFSQEALQYVVER--VGKRTGWLVEI-----VN 1845
Query: 417 D--PGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQLQYFFTAG 474
+ +G D+ LD T+VL+ I Q ++LQ +
Sbjct: 1846 YNVENQQYV-AAG-------DLRA------LD--TVTNVLNFIKLQKIDIIELQKSLSL- 1888
Query: 475 QDEVKA 480
+EV+
Sbjct: 1889 -EEVEG 1893
Score = 35.0 bits (80), Expect = 0.086
Identities = 38/205 (18%), Positives = 60/205 (29%), Gaps = 77/205 (37%)
Query: 395 AKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRY--------LD 446
A ++ K + I + V N P I F G ++ R+ Y +D
Sbjct: 1649 ADNHFKDTYGF--SILDIVINN-PVNLTIHFGGEKGKRI-------RENYSAMIFETIVD 1698
Query: 447 EQKATSVLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHT----DFE- 501
+ T + K I + S Y F + + + A T+ Q A + FE
Sbjct: 1699 GKLKTEKIFKEINEHSTS----YTFRSEKGLLSA------TQFTQPA--LTLMEKAAFED 1746
Query: 502 ---KGFI-------------------MAEVMHFDDFKEHGSEAACRAAGKYRQQGRAYTV 539
KG I +A+VM + YR G V
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIES--------LVEVV-FYR--GMTMQV 1795
Query: 540 -----EDGDIIFFKFNAGAGLNPKK 559
E G + +NP +
Sbjct: 1796 AVPRDELGRSNY----GMIAINPGR 1816
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 44.2 bits (105), Expect = 6e-05
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
G+ ++ ++G PN GK++ FN++T + N+P T++
Sbjct: 1 GSMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
Score = 41.5 bits (98), Expect = 4e-04
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 242 GTNLKVGIVGVPNVGKSTFFNVLT 265
G+ ++ ++G PN GK++ FN++T
Sbjct: 1 GSMTEIALIGNPNSGKTSLFNLIT 24
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 42.1 bits (100), Expect = 9e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
+ ++ ++G PNVGKST FN LT + N+P T++
Sbjct: 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE 39
Score = 40.5 bits (96), Expect = 4e-04
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLT 265
+ ++ ++G PNVGKST FN LT
Sbjct: 3 SYEIALIGNPNVGKSTIFNALT 24
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 42.2 bits (100), Expect = 1e-04
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
+ ++ ++G PNVGKST FN LT + N+P T++
Sbjct: 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE 43
Score = 40.6 bits (96), Expect = 4e-04
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLT 265
+ ++ ++G PNVGKST FN LT
Sbjct: 7 SYEIALIGNPNVGKSTIFNALT 28
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 43.4 bits (102), Expect = 1e-04
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 197 WRNLKLLETRIRDLRRSVDAKA------DSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIV 250
L +R + + + K +G K E + R V +V
Sbjct: 114 SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVME-----AINRYREGGDVYVV 168
Query: 251 GVPNVGKSTFFNVLTKRAFEDDDVTHV 277
G NVGKSTF N + + A +V
Sbjct: 169 GCTNVGKSTFINRIIEEATGKGNVITT 195
Score = 43.4 bits (102), Expect = 1e-04
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAEN 125
+ R V +VG NVGKSTF N + + + N
Sbjct: 155 AINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGN 191
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 43.6 bits (104), Expect = 1e-04
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPNENNKVPAFLN-----VVDIAGLV 152
V IVG PNVGKST FN L K A E+ T DP ++ +VD G+
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQD---TVEWYGKTFKLVDTCGVF 60
Query: 153 KGAAEG 158
+
Sbjct: 61 DNPQDI 66
Score = 43.3 bits (103), Expect = 2e-04
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST FN L K+
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKK 24
Score = 36.7 bits (86), Expect = 0.019
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 97 LKVGIVGVPNVGKSTFFNVL 116
+KV IVG PNVGKST FN +
Sbjct: 181 IKVAIVGRPNVGKSTLFNAI 200
Score = 36.7 bits (86), Expect = 0.019
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 245 LKVGIVGVPNVGKSTFFNVL 264
+KV IVG PNVGKST FN +
Sbjct: 181 IKVAIVGRPNVGKSTLFNAI 200
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 43.5 bits (102), Expect = 1e-04
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH---VEGEVNPVRDIEIINEELRLKDV 299
+ L V + G GKS+F N L E++ VE + + D+
Sbjct: 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDL 127
Query: 300 EHIEKEINKIEKLVQR 315
I + +++
Sbjct: 128 PGIGSTNFPPDTYLEK 143
Score = 35.8 bits (82), Expect = 0.033
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAEN 125
+ L V + G GKS+F N L E
Sbjct: 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEG 98
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 43.6 bits (104), Expect = 1e-04
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAA 122
V IVG PNVGKST FN + +
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERIS 29
Score = 43.6 bits (104), Expect = 1e-04
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST FN +
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGE 26
Score = 35.9 bits (84), Expect = 0.030
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 97 LKVGIVGVPNVGKSTFFNVL 116
++ ++G PNVGKS+ N +
Sbjct: 176 IQFCLIGRPNVGKSSLVNAM 195
Score = 35.9 bits (84), Expect = 0.030
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 245 LKVGIVGVPNVGKSTFFNVL 264
++ ++G PNVGKS+ N +
Sbjct: 176 IQFCLIGRPNVGKSSLVNAM 195
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 41.9 bits (99), Expect = 3e-04
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
+KV + G PNVGK++ FN LT + N+P T++
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVE 41
Score = 39.6 bits (93), Expect = 0.002
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
+KV + G PNVGK++ FN LT
Sbjct: 6 VKVALAGCPNVGKTSLFNALT 26
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 41.2 bits (97), Expect = 5e-04
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFP 127
L +G++G PN GK+T FN LT S N+
Sbjct: 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWA 34
Score = 39.6 bits (93), Expect = 0.002
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLT 265
L +G++G PN GK+T FN LT
Sbjct: 3 KLTIGLIGNPNSGKTTLFNQLT 24
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 41.2 bits (97), Expect = 6e-04
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFP 127
V +VG PNVGK+T FN LT N+P
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWP 34
Score = 38.1 bits (89), Expect = 0.004
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
V +VG PNVGK+T FN LT
Sbjct: 4 KTVALVGNPNVGKTTIFNALT 24
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 40.7 bits (96), Expect = 6e-04
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
++G PN GK+T FN LT ++ N+P T++
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVE 37
Score = 38.4 bits (90), Expect = 0.003
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 246 KVGIVGVPNVGKSTFFNVLT 265
++G PN GK+T FN LT
Sbjct: 3 HALLIGNPNCGKTTLFNALT 22
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 41.1 bits (96), Expect = 7e-04
Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 32/156 (20%)
Query: 20 DGLSFYESTNPKIPRSNQILISDKPTW-----GDGDGPKAPKRRKQHLSDKLRPKA---- 70
D F S P + R + + D + +H +
Sbjct: 78 DIFDFNGSWLPGLHR----FVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKP 133
Query: 71 ------DSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAE 124
+ K G + + + G+ V +VG NVGKSTF N + K +
Sbjct: 134 EDVFLISAAKGQGIAELADAIEYYRGGK-----DVYVVGCTNVGKSTFINRMIKEFSDET 188
Query: 125 -------NFPFCTIDPNENNKVPAFLNVVDIAGLVK 153
+FP T+D + + ++ D G++
Sbjct: 189 ENVITTSHFPGTTLDLID-IPLDEESSLYDTPGIIN 223
Score = 40.3 bits (94), Expect = 0.001
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRA 268
V +VG NVGKSTF N + K
Sbjct: 162 DVYVVGCTNVGKSTFINRMIKEF 184
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 40.6 bits (96), Expect = 0.001
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 26/86 (30%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK--RAFEDDDVTHVEGEVNPVRDI--EIINEE---LRLK 297
+ I G PN GKST N L RA V+H+ G RD E + RL
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQERAI----VSHMPGT---TRDYIEECFIHDKTMFRLT 286
Query: 298 D----------VEHI--EKEINKIEK 311
D +EH + K+ +
Sbjct: 287 DTAGLREAGEEIEHEGIRRSRMKMAE 312
Score = 39.4 bits (93), Expect = 0.003
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAA 122
+ I G PN GKST N L A
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQERA 259
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 40.6 bits (96), Expect = 0.001
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 11/57 (19%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK--RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDV 299
L++ IVG PNVGKST N L RA VT + G RD +I+EE+ ++ +
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI----VTDIPGT---TRD--VISEEIVIRGI 291
Score = 39.1 bits (92), Expect = 0.003
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAA 122
L++ IVG PNVGKST N L A
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRA 269
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 38.7 bits (91), Expect = 0.002
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAA 122
+KV I G PN GKS+ N L AA
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAA 30
Score = 37.9 bits (89), Expect = 0.003
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK--RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDV 299
+KV I G PN GKS+ N L A VT + G RD ++ E + + +
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAI----VTDIAGT---TRD--VLREHIHIDGM 52
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 40.0 bits (94), Expect = 0.002
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 81 TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLT 117
D M L G + + G NVGKS+F N L
Sbjct: 19 EDPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALV 55
Score = 40.0 bits (94), Expect = 0.002
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 229 TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLT 265
D M L G + + G NVGKS+F N L
Sbjct: 19 EDPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALV 55
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 39.8 bits (94), Expect = 0.002
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 26/86 (30%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK--RAFEDDDVTHVEGEVNPVRDI--EIINEE---LRLK 297
LKV IVG PNVGKS+ N ++ RA VT + G RD+ + +++
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAI----VTDLPGT---TRDVVESQLVVGGIPVQVL 277
Query: 298 D----------VEHI--EKEINKIEK 311
D VE I E+
Sbjct: 278 DTAGIRETSDQVEKIGVERSRQAANT 303
Score = 39.0 bits (92), Expect = 0.003
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAA 122
LKV IVG PNVGKS+ N ++S A
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRA 250
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 35.9 bits (84), Expect = 0.024
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 99 VGIVGVPNVGKSTFFNVL 116
+ IVG PNVGKST N L
Sbjct: 11 IAIVGRPNVGKSTLLNKL 28
Score = 35.9 bits (84), Expect = 0.024
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 247 VGIVGVPNVGKSTFFNVL 264
+ IVG PNVGKST N L
Sbjct: 11 IAIVGRPNVGKSTLLNKL 28
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 36.3 bits (84), Expect = 0.024
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267
+L + G ++VGI GVP VGKST + L
Sbjct: 46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78
Score = 35.5 bits (82), Expect = 0.038
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 87 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 118
+L + G ++VGI GVP VGKST + L
Sbjct: 46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 35.9 bits (83), Expect = 0.025
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267
++ G L++G+ G P GKSTF
Sbjct: 47 DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79
Score = 35.6 bits (82), Expect = 0.036
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 87 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 118
++ G L++G+ G P GKSTF
Sbjct: 47 DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 36.0 bits (83), Expect = 0.025
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267
LL G +VGI GVP VGKST L
Sbjct: 70 LRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102
Score = 35.6 bits (82), Expect = 0.034
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 87 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 118
LL G +VGI GVP VGKST L
Sbjct: 70 LRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 35.9 bits (84), Expect = 0.029
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 99 VGIVGVPNVGKSTFFNVL 116
V IVG PNVGKST N L
Sbjct: 10 VAIVGKPNVGKSTLLNNL 27
Score = 35.9 bits (84), Expect = 0.029
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 247 VGIVGVPNVGKSTFFNVL 264
V IVG PNVGKST N L
Sbjct: 10 VAIVGKPNVGKSTLLNNL 27
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 35.9 bits (84), Expect = 0.030
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 99 VGIVGVPNVGKSTFFNVL 116
V IVG PNVGKST N L
Sbjct: 13 VAIVGKPNVGKSTLLNNL 30
Score = 35.9 bits (84), Expect = 0.030
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 247 VGIVGVPNVGKSTFFNVL 264
V IVG PNVGKST N L
Sbjct: 13 VAIVGKPNVGKSTLLNNL 30
>2pnw_A AGR_C_15P, membrane-bound lytic murein transglycosylase; structural
genomics, PSI-2, protein structure initiative; 1.90A
{Agrobacterium tumefaciens str} SCOP: b.52.1.4
Length = 380
Score = 35.6 bits (81), Expect = 0.035
Identities = 21/157 (13%), Positives = 37/157 (23%), Gaps = 30/157 (19%)
Query: 393 LSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATS 452
L + + K + I++W+ + + + + + E
Sbjct: 221 LLDRGELDPKTISMQTIRQWLADHPDEVDGV------------LWHNRSYIFFREADVAG 268
Query: 453 VLDKIITQGYKSLQLQYFFTAGQDEVKAWTIQKGT----KAPQAAGRIHTDFEKGFIMAE 508
+ I + L D G AP ++A
Sbjct: 269 LDMGPI--AAAKVPLVAGRALAVDR---LIHTFGLPFFIHAPTLTHLDDGKPFARLMLAL 323
Query: 509 --------VMHFDDFKEHGSEAACRAAGKYRQQGRAY 537
D F G EA AG R + Y
Sbjct: 324 DTGSAIVGPARGDIFTGSGFEAG-ELAGTVRNEADFY 359
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 35.1 bits (80), Expect = 0.043
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 91 GRV--GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFP------------FCTIDPNEN 136
G + G + +VG +GKST N L + + +P + +
Sbjct: 1 GPLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 60
Query: 137 NKVPAFLNVVDIAGL 151
V L +VD G
Sbjct: 61 GGVQLLLTIVDTPGF 75
Score = 34.4 bits (78), Expect = 0.088
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 11/80 (13%)
Query: 239 GRV--GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEI------- 289
G + G + +VG +GKST N L + + +E
Sbjct: 1 GPLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 60
Query: 290 --INEELRLKDVEHIEKEIN 307
+ L + D ++
Sbjct: 61 GGVQLLLTIVDTPGFGDAVD 80
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 34.4 bits (78), Expect = 0.086
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 242 GTNLKVGIVGVPNVGKSTFFNVL-TKRAFEDDDVTHVEGEVNPVRDIEIINEEL 294
G + +VG +GKST N L + + ++ ++ IE E+
Sbjct: 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEI 69
Score = 32.9 bits (74), Expect = 0.26
Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 13/71 (18%)
Query: 94 GTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN-------------ENNKVP 140
G + +VG +GKST N L + E + E V
Sbjct: 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVK 75
Query: 141 AFLNVVDIAGL 151
L VVD G
Sbjct: 76 LRLTVVDTPGY 86
>2ae0_X Membrane-bound lytic murein transglycosylase A; double-PSI
beta-barrel, small mixed parallel/antiparallel SI
stranded beta barrel; 2.00A {Escherichia coli} SCOP:
b.52.1.4 PDB: 2pjj_A 2pic_A 2pi8_A* 2gae_A
Length = 345
Score = 34.4 bits (78), Expect = 0.098
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 40/161 (24%)
Query: 393 LSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATS 452
L + +KK++ + I+ W + + + E + L++ +
Sbjct: 195 LIDRGEVKKEDMSMQAIRHWGETH--------------------SEAEVRELLEQNPSFV 234
Query: 453 VLDKIITQ---GYKSLQLQYFFTAGQDEVKAWTIQKGTKA------PQAAGRIHTDFEKG 503
G ++ L + D I GT G+ + +E
Sbjct: 235 FFKPQSFAPVKGASAVPLVGRASVASDRS---IIPPGTTLLAEVPLLDNNGKFNGQYELR 291
Query: 504 FIMAE-------VMHFDDFKEHGSEAACRAAGKYRQQGRAY 537
++A HFD ++ G EA AG Y GR +
Sbjct: 292 LMVALDVGGAIKGQHFDIYQGIGPEAG-HRAGWYNHYGRVW 331
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 34.0 bits (78), Expect = 0.10
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA-ENFPFCTIDPNENNKVPA--FLNVVDIAGL 151
+ V ++G VGKS+ N L F + P ++ +N++D GL
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGL 94
Score = 29.8 bits (67), Expect = 2.1
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 245 LKVGIVGVPNVGKSTFFN-VLTKRAFEDDDV 274
+ V ++G VGKS+ N ++ ++
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPF 67
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.3 bits (78), Expect = 0.11
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR---DIEIINEELRLKD 298
G + VG +GKST + L FE + TH + V D++ N L+L
Sbjct: 40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTI 99
Query: 299 VE 300
V
Sbjct: 100 VS 101
Score = 28.9 bits (64), Expect = 4.4
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 94 GTNLKVGIVGVPNVGKSTFFNVLTKSS----AAAENFPFCTIDPN----ENNKVPAFLNV 145
G + VG +GKST + L + A P + N + + V L +
Sbjct: 40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTI 99
Query: 146 VDIAGL 151
V G
Sbjct: 100 VSTVGF 105
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 33.2 bits (75), Expect = 0.13
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE--------GEVNPVRDIEIINEEL 294
+ + I G P GK++ ++ + + E + D II E+
Sbjct: 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKD 68
Query: 295 RLKDVEHIEKEINKIEKLV 313
+ ++ +E + V
Sbjct: 69 EDRLLDFMEPIMVSRGNHV 87
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 34.2 bits (77), Expect = 0.14
Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 11/154 (7%)
Query: 198 RNLKLLETRIRDLRRSVDAKADSKKKMGPKKTDEGEKKMLLGRV-GTNLKVGIVGVPNVG 256
+ + ++ + + DS + D + + + ++ ++G G
Sbjct: 22 SEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKRG 81
Query: 257 KSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKE----------I 306
KSTF N L DV + +R + D + ++ I
Sbjct: 82 KSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTI 141
Query: 307 NKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNG 340
+ E +KK V + ++ G
Sbjct: 142 DPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKG 175
Score = 28.4 bits (62), Expect = 7.2
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 58 RKQHLSDKLRPKADSKKKMGPKKTDEGEKKMLLGRV-GTNLKVGIVGVPNVGKSTFFNVL 116
+ +K DS + D + + + ++ ++G GKSTF N L
Sbjct: 30 KLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNAL 89
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 33.7 bits (77), Expect = 0.16
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 231 EGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR 267
E++ +VG+ G P GKSTF K
Sbjct: 61 HREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKM 97
Score = 33.3 bits (76), Expect = 0.20
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 83 EGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 118
E++ +VG+ G P GKSTF K
Sbjct: 61 HREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGK 96
>3czb_A Putative transglycosylase; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.50A {Caulobacter
crescentus}
Length = 351
Score = 32.9 bits (74), Expect = 0.26
Identities = 19/163 (11%), Positives = 34/163 (20%), Gaps = 43/163 (26%)
Query: 393 LSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATS 452
+ K + N I+ W+ + +
Sbjct: 200 MRDKGLLPDNNTSADAIRTWLAEH---------------------RGPEADAIMRLNPRY 238
Query: 453 VLDKIITQ------GYKSLQLQYFFTAGQDEVKAWTIQKGT----KAPQAAGRIHTDFEK 502
V + + G + L D G A +
Sbjct: 239 VFFRTVPDDGKEPAGAAGVALPPGRAIAVD---PGYHAYGGFYWLDAAAPKLVGAFPVYR 295
Query: 503 GFIMAE--------VMHFDDFKEHGSEAACRAAGKYRQQGRAY 537
+ A + D + G+ A AG+ R R Y
Sbjct: 296 RAVTALDTGGAIKGEVRADLYMGSGAVAG-VEAGRVRHTLRLY 337
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 31.2 bits (70), Expect = 0.79
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
+++ + GV +GKST V+ A +
Sbjct: 8 VRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP 41
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 30.7 bits (69), Expect = 1.1
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 245 LKVGIVGVPNVGKSTFFN-VLTKRAFEDDD----VTHVEGEVNPV--RDIEIINEELRLK 297
L + ++G VGKS+ N ++ +R + II+ L
Sbjct: 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTP-GLI 98
Query: 298 DVEHIEKEINKIEK 311
+ +I I K
Sbjct: 99 EGGYINDMALNIIK 112
Score = 30.3 bits (68), Expect = 1.6
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPNENNKVPA--FLNVVDIAGL 151
L + ++G VGKS+ N + F P ++ A LN++D GL
Sbjct: 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL 97
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 30.6 bits (70), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 99 VGIVGVPN-VGKSTFFNVLT 117
I+G PN GKST NV+T
Sbjct: 36 TLIIG-PNGSGKSTLINVIT 54
Score = 30.6 bits (70), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 247 VGIVGVPN-VGKSTFFNVLT 265
I+G PN GKST NV+T
Sbjct: 36 TLIIG-PNGSGKSTLINVIT 54
>2i71_A Hypothetical protein; structural genomics, APC6294, PSI-2, protein
structure initia midwest center for structural genomics,
MCSG; 1.70A {Sulfolobus solfataricus} SCOP: e.72.1.1
Length = 400
Score = 30.6 bits (68), Expect = 1.3
Identities = 31/142 (21%), Positives = 48/142 (33%), Gaps = 14/142 (9%)
Query: 228 KTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI 287
E + + T + I V K + L ++ G V+ + +
Sbjct: 260 HLKRLEDDLSKDPLLTPSENEINVVYKDMKYALSHALFYV------ISRFSGNVD-LDTL 312
Query: 288 EIINEELRLKDVEH-IEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIY-LFIKNGHIGHE 345
E K IE E++KIEK ++KL EY+ F + H G
Sbjct: 313 RHYAETYADKVTRAIIENEVDKIEKYQMGSERKLLGEYMKVEGKGFDKRILY--AHGGLP 370
Query: 346 DALVKIKAFVCEGDKRHARYGD 367
A + E DK + YGD
Sbjct: 371 YAGTYVY---KEKDKVYVTYGD 389
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.6 bits (68), Expect = 1.6
Identities = 11/58 (18%), Positives = 19/58 (32%)
Query: 242 GTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDV 299
G + +VG +GKST N L + + +E ++ V
Sbjct: 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 30.4 bits (68), Expect = 2.0
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFE------DDDVTHVEGEVNPVRDIEIINEELRLKDV 299
+ GI G GKST + + + +VE +++ + + + V
Sbjct: 463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGV 522
Query: 300 EHIEKEINKIEKL 312
E +K+ +
Sbjct: 523 GTKEAIKDKLIEF 535
Score = 28.8 bits (64), Expect = 5.9
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 52 PKAPKRRKQHLSDKLRPKADSKKKMGPKKTDEGEKKMLLG---RVGTNLKVGIVGVPNVG 108
P+ K + KA K + K + + + ++ ++G G
Sbjct: 656 PEPGYLEGV----KTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAG 711
Query: 109 KSTFFNVLT 117
KST NVLT
Sbjct: 712 KSTLINVLT 720
Score = 28.5 bits (63), Expect = 6.9
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 203 LETRIRDLRRSVDAKADSKKKM-GPKKTDEGEKKMLLGRVGTNL----KVGIVGVPNVGK 257
+ V K + K+ + G K + + ++ ++G GK
Sbjct: 653 FKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGK 712
Query: 258 STFFNVLTKR 267
ST NVLT
Sbjct: 713 STLINVLTGE 722
Score = 28.5 bits (63), Expect = 8.2
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFP 127
+ GI G GKST + ++ + FP
Sbjct: 463 RYGICGPNGCGKSTLMRAI--ANGQVDGFP 490
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 29.3 bits (66), Expect = 2.2
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
V + G P GKST N L
Sbjct: 25 VALSGAPGSGKSTLSNPLAAA 45
Score = 29.3 bits (66), Expect = 2.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 99 VGIVGVPNVGKSTFFNVL 116
V + G P GKST N L
Sbjct: 25 VALSGAPGSGKSTLSNPL 42
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 29.2 bits (65), Expect = 2.3
Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 225 GPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRA-FEDDDVTHVEGEVNP 283
GP + E + + G P VGK+T L ++ + +V + E
Sbjct: 1 GPLGSPEFMLLP---------NILLTGTPGVGKTTLGKELASKSGLKYINVGDLARE--- 48
Query: 284 VRDIEIINEELRLKDVEHIEKEINKIEKLVQRGD 317
+ +E + ++ +++++ ++ G
Sbjct: 49 -EQLYDGYDEEYDCPILDEDRVVDELDNQMREGG 81
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 29.4 bits (66), Expect = 2.3
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV 277
+K +VG VGK+ T AF + + V
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 63
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 28.4 bits (64), Expect = 4.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 254 NVGKSTFFNVLTKR 267
N GKST NVL +
Sbjct: 39 NAGKSTAINVLCNQ 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 29.2 bits (66), Expect = 4.6
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 99 VGIVGVPN-VGKSTFFNVLT 117
+GIVG PN +GK+TF +L
Sbjct: 385 IGIVG-PNGIGKTTFVKMLA 403
Score = 29.2 bits (66), Expect = 4.6
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 247 VGIVGVPN-VGKSTFFNVLT 265
+GIVG PN +GK+TF +L
Sbjct: 385 IGIVG-PNGIGKTTFVKMLA 403
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 28.4 bits (63), Expect = 4.7
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 97 LKVGIVGVPNVGKSTFFN-VLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAG 150
+K+ I G P VGK+T ++ + A F + E K F ++ G
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGF-RIITTEG 54
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 28.4 bits (64), Expect = 5.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 254 NVGKSTFFNVLTKR 267
N GKS+ N LT +
Sbjct: 36 NAGKSSALNTLTNQ 49
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 5.4
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLTKR-AFEDDDVTHVE 278
N V + GVP VG +T + E + V
Sbjct: 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 28.2 bits (63), Expect = 5.4
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 90 LGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-----NNKVPAFLN 144
+ R + V VG+ + GK+ F L + + +I + NN L
Sbjct: 1 MARKSSQRAVLFVGLCDSGKTLLFVRL-LTGQYRDTQT--SITDSSAIYKVNNNRGNSLT 57
Query: 145 VVDIAG 150
++D+ G
Sbjct: 58 LIDLPG 63
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
post-fusion, viral PR; HET: NAG; 3.05A {Human
parainfluenza virus 3}
Length = 490
Score = 28.9 bits (64), Expect = 5.6
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 394 SAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQ 432
+K++I++ N+ L I W ++ G ++P H
Sbjct: 451 ESKEWIRRSNQKLDSIGNWHQSSTTGGPLVPRGSHHHHH 489
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 28.7 bits (63), Expect = 6.0
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 240 RVGTNLKVGIVGVPNVGKSTFFNVLTKR-AFEDDDVTHVEGEVNPVRDIEIINEEL 294
+ G + +VG +GKST N L + + + ++ IE E+
Sbjct: 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEI 88
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 27.9 bits (63), Expect = 6.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 254 NVGKSTFFNVLTKR 267
NVGKS+ N L R
Sbjct: 33 NVGKSSLLNALFNR 46
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein
NEDD3, neural precursor cell expressed developmentally
DOWN-regulated protein 3; NMR {Homo sapiens}
Length = 93
Score = 26.7 bits (59), Expect = 7.0
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 16/56 (28%)
Query: 492 AAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAGKYRQQ--GRAYTVEDGDII 545
+IH + K F A V G K+ Q G+ +T+ED D+I
Sbjct: 41 FCMKIHKNLIKEFKYALVW--------GLSV------KHNPQKVGKDHTLEDEDVI 82
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 27.9 bits (63), Expect = 7.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 254 NVGKSTFFNVLTKR 267
NVGKS+F N L R
Sbjct: 33 NVGKSSFINSLINR 46
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 27.8 bits (62), Expect = 7.6
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 224 MGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDV-THVEGEVN 282
MGP + G + G G +K +VG VGK++ T + + + T + N
Sbjct: 2 MGPGE--PGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD---N 56
Query: 283 PVRDIEIINEELRL 296
+ + +RL
Sbjct: 57 FSAVVSVDGRPVRL 70
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 27.8 bits (62), Expect = 8.5
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAF-LNVVDIAG 150
I G N GK++ +L + + + +P + +VD G
Sbjct: 53 IAGPQNSGKTSLLTLL-TTDSVRPTVV--SQEPLSAADYDGSGVTLVDFPG 100
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 27.6 bits (61), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 243 TNLKVGIVGVPNVGKSTFFN-VLTKRAFE 270
+ L++ +VG GKS N +L ++ F
Sbjct: 28 SQLRIVLVGKTGAGKSATGNSILGRKVFH 56
Score = 27.6 bits (61), Expect = 9.4
Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 13/67 (19%)
Query: 56 KRRKQHLSDKLRPKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNV 115
H S + + + L++ +VG GKS N
Sbjct: 2 HHHHHHSSGRENLYFQGGPGRQEPRNSQ-------------LRIVLVGKTGAGKSATGNS 48
Query: 116 LTKSSAA 122
+
Sbjct: 49 ILGRKVF 55
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 27.4 bits (61), Expect = 10.0
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAF-LNVVDIAG 150
I G N GK++ +L + + + +P + +VD G
Sbjct: 17 IAGPQNSGKTSLLTLL-TTDSVRPTVV--SQEPLSAADYDGSGVTLVDFPG 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.400
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,706,350
Number of extensions: 540655
Number of successful extensions: 1907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1871
Number of HSP's successfully gapped: 164
Length of query: 561
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 463
Effective length of database: 3,965,535
Effective search space: 1836042705
Effective search space used: 1836042705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)