RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17315
(561 letters)
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 144 bits (366), Expect = 2e-42
Identities = 45/84 (53%), Positives = 61/84 (72%)
Query: 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRA 526
LQ +FTAG EV+AWT+ G AP+AA IHTDFEKGFI AEV+ ++DF + E +
Sbjct: 1 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKE 60
Query: 527 AGKYRQQGRAYTVEDGDIIFFKFN 550
AGK+R +G+ Y V+DGD++ F+FN
Sbjct: 61 AGKWRLEGKDYIVQDGDVMHFRFN 84
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 82
Score = 138 bits (350), Expect = 3e-40
Identities = 48/82 (58%), Positives = 64/82 (78%)
Query: 467 LQYFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRA 526
L +FT G+DEV++WTI+KGTKAPQAAG IHTDFEK F++ E+MH+ D ++ +E ACRA
Sbjct: 1 LINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRA 60
Query: 527 AGKYRQQGRAYTVEDGDIIFFK 548
AGKY +G+ Y +E GDI +K
Sbjct: 61 AGKYLTKGKEYVMESGDIAHWK 82
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 139 bits (351), Expect = 5e-38
Identities = 56/155 (36%), Positives = 75/155 (48%), Gaps = 26/155 (16%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE-------------------NN 137
K GIVG+PNVGKST FN LTK+ A N+PFCTI+PN
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 138 KVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHL--CKEKLRNIFFISLNTIT 195
+P + VDIAGLV GA++G+GLGN FL++I DAI H+ C E + I
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVH--VAGKID 120
Query: 196 IWRNLKLLETRIR--DLRRSVDAKADSKKKMGPKK 228
++ + T + DL S + +K
Sbjct: 121 PLDDIDTINTELALADL-DSCERAIQRLQKRAKGG 154
Score = 119 bits (300), Expect = 6e-31
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 28/200 (14%)
Query: 267 RAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKLVQRGDKKLKPEYVS 326
R FE+DD+ HV G+++P+ DI+ IN EL L D++ E+ I +++K + GDK+ K E
Sbjct: 105 RCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSV 164
Query: 327 EVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNADIEHLNKLNLLTAKT 386
+ R +++ + N LT K
Sbjct: 165 MEKILPVLENA-----------------------GMIRSVGLDKEELQAIKSYNFLTLKP 201
Query: 387 QIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLD 446
+Y+ N++ + + N +L +++E A GA ++P E ++ ++ D+E+ +L
Sbjct: 202 TMYIANVNEDGF--ENNPYLDRVREI--AAKEGAVVVPVCAAIESEIAELDDEEKVEFLQ 257
Query: 447 EQKAT-SVLDKIITQGYKSL 465
+ L+++I GY L
Sbjct: 258 DLGIEEPGLNRVIRAGYALL 277
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 126 bits (318), Expect = 2e-33
Identities = 82/295 (27%), Positives = 123/295 (41%), Gaps = 64/295 (21%)
Query: 235 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDD---------------DVTHVEG 279
K+ GR G NLK GIVG+PNVGKSTFF +TK + V
Sbjct: 1 KVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 60
Query: 280 EV--NPVRDIEIINEELRLKDVEHIEKEINKIEKL------------------------- 312
+ + + L + D+ + K + L
Sbjct: 61 DWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAE 120
Query: 313 VQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARY------- 365
+ + + P + + + H + L KI + + A+
Sbjct: 121 IIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIE 180
Query: 366 ---------------GDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIK 410
GDWSN ++E +N L LLTAK IYLVN+S +D++++KNK+LPKIK
Sbjct: 181 KVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIK 240
Query: 411 EWVDANDPGATIIPFSGVFEHQLVDMPDDERQRYLDEQKATSVLDKIITQGYKSL 465
+W+D N PG T+IP S FE +L + ++E + S+L KII GY +L
Sbjct: 241 KWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNAL 295
Score = 113 bits (284), Expect = 9e-29
Identities = 58/113 (51%), Positives = 69/113 (61%), Gaps = 20/113 (17%)
Query: 87 KMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA-AENFPFCTIDPNE---------- 135
K+ GR G NLK GIVG+PNVGKSTFF +TKS N+P+ TIDP E
Sbjct: 1 KVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 60
Query: 136 ---------NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLC 179
++VPAFL V DIAGL KGA+ G GLGNAFLSH+ A DAI+ +
Sbjct: 61 DWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 113
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 96.1 bits (238), Expect = 2e-22
Identities = 55/245 (22%), Positives = 89/245 (36%), Gaps = 35/245 (14%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNE--------------------- 135
+++G+VG PNVGKSTFF+ T N+PF TI+ N
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 136 -----NNKVPAFLNVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCK-EKLRNIFFI 189
N + +VD+AGLV GA EG+GLGN FL + A+ H+ +
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQ 120
Query: 190 SLNTITIWRNLKLLETRIRDLRRSVDAKAD---SKKKMGPKKTDEGEKKMLLGRVGTNLK 246
+ +++ LE I + +K +K+ K E L +G N
Sbjct: 121 PTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Query: 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEI 306
+ + + DD+ E+ V +I + K +
Sbjct: 181 DVWEAMHKLNLPEDPT-----KWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRL 235
Query: 307 NKIEK 311
+ E+
Sbjct: 236 VREEE 240
Score = 91.1 bits (225), Expect = 1e-20
Identities = 33/232 (14%), Positives = 64/232 (27%), Gaps = 27/232 (11%)
Query: 254 NVGKSTFFNVLTKRAFEDDDV-THVEGEVNPVRDIEIINEELRLKDVEHIEKEINKIEKL 312
+ + + A D +PV DIE + E+ + K +K K
Sbjct: 97 DDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKR 156
Query: 313 VQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDWSNAD 372
++ KL+ + + + + + WS D
Sbjct: 157 IKLQKIKLESAIAEH----LSGIGVNENDVWEAMHKLNLPE----------DPTKWSQDD 202
Query: 373 IEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPFSGVFEHQ 432
+ K + N + ++ + ++ G +IP S E
Sbjct: 203 LLAFASEIRRVNKPMVIAANKADAAS----DEQIKRLVRE--EEKRGYIVIPTSAAAELT 256
Query: 433 LVDMPDDERQRYLDEQKATSVLDKIITQGYKSLQ------LQYFFTAGQDEV 478
L Y+ VL + + ++L L F + G EV
Sbjct: 257 LRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEV 308
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 77.0 bits (188), Expect = 4e-17
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAF---LNVVDIAGLVKGA 155
VG+VG PN GKS+ +T++ +PF T+ PN + + DI G+++GA
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 156 AEGQGLGNAFLSHISACDAIFHLC 179
+EG+GLG FL HI+ + ++
Sbjct: 64 SEGKGLGLEFLRHIARTRVLLYVL 87
Score = 48.5 bits (114), Expect = 3e-07
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 3/172 (1%)
Query: 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEI 306
VG+VG PN GKS+ +T+ + N E L D+ I +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 307 NKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYG 366
++ + L + + V +K ++ A +
Sbjct: 64 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123
Query: 367 DWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDP 418
D + E + L A+ + ++ +SA + V + P
Sbjct: 124 DL--LEEEAVKALADALAREGLAVLPVSALTG-AGLPALKEALHALVRSTPP 172
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 76.1 bits (186), Expect = 1e-16
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAF---LNVVDIAGLVKGA 155
VG+VG P+VGKST +V++ + ++ F T+ PN + D+ GL++GA
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 156 AEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRN 199
+G GLG+ FL HI I H+ + +TI +
Sbjct: 64 HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE 107
Score = 42.6 bits (99), Expect = 3e-05
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEI 306
VG+VG P+VGKST +V++ + D N + D+ + +
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 307 NKIEKLVQR 315
++ L +
Sbjct: 64 HQGVGLGHQ 72
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 51.1 bits (121), Expect = 3e-08
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNE-----NNKVPAFLNVVDIAG 150
L++ IVG PNVGKST N L A + P T D + ++ +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 151 LVKGAAEGQGLGNAFLSHISACDAIFHLC 179
E G+ L I D + +
Sbjct: 61 ETNDLVERLGI-ERTLQEIEKADIVLFVL 88
Score = 47.3 bits (111), Expect = 6e-07
Identities = 31/152 (20%), Positives = 49/152 (32%), Gaps = 8/152 (5%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304
L++ IVG PNVGKST N L +I I R+ D +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 305 EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHAR 364
E N + ++ + E+ + I LF+ + ++ KI +
Sbjct: 61 ETNDL------VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVI 114
Query: 365 YGDWSNADIEHLNKLNLLTAKTQIYLVNLSAK 396
I N L + V +SA
Sbjct: 115 NKVDVVEKINEEEIKNKLGTDRHM--VKISAL 144
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 48.5 bits (114), Expect = 3e-07
Identities = 12/39 (30%), Positives = 13/39 (33%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN 137
+ G NVGKST LT P T E
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE 41
Score = 38.9 bits (89), Expect = 6e-04
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
+ G NVGKST LT +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGK 23
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 44.7 bits (104), Expect = 7e-06
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN 134
+ IVG PNVGKST N L + + T
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR 43
Score = 40.5 bits (93), Expect = 2e-04
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
+ IVG PNVGKST N L +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ 28
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 42.7 bits (99), Expect = 3e-05
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN 137
+KV IVG PNVGKST FN + A P T DP ++
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDE 50
Score = 40.4 bits (93), Expect = 2e-04
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKR 267
+KV IVG PNVGKST FN + +
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNK 31
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 42.1 bits (97), Expect = 4e-05
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSS-AAAENFPFCTIDPNENN 137
V IVG PNVGKST FN L K A E+ T DP ++
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDT 42
Score = 39.0 bits (89), Expect = 4e-04
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST FN L K+
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKK 23
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 41.7 bits (96), Expect = 5e-05
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN 134
+KV I G PN GKS+ N L AA T
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 39
Score = 41.7 bits (96), Expect = 6e-05
Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 29/173 (16%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304
+KV I G PN GKS+ N L R E V DI ++ + +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGR------------EAAIVTDIAGTTRDVLREHIHIDGM 49
Query: 305 EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHAR 364
++ I+ R + ++ + + + D E
Sbjct: 50 PLHIIDTAGLREASDEVERI--GIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIA 107
Query: 365 YGDWSNADIEHLNKLNLLTAKTQIY------LVNLSAK---------DYIKKK 402
NK ++ + L+ LSA+ +++K+
Sbjct: 108 RLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQS 160
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 40.9 bits (94), Expect = 1e-04
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN 137
++V G N GKS+ N LT + A N
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 57
Score = 37.8 bits (86), Expect = 0.001
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTK 266
++V G N GKS+ N LT
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTN 38
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 41.7 bits (97), Expect = 2e-04
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH---VEGEVNPVRDIEIINEELRLKDV 299
+ L V + G GKS+F N L E++ VE + + D+
Sbjct: 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDL 114
Query: 300 EHIEKEINKIEKLVQR 315
I + +++
Sbjct: 115 PGIGSTNFPPDTYLEK 130
Score = 37.4 bits (86), Expect = 0.004
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 95 TNLKVGIVGVPNVGKSTFFNVLT-----KSSAAAENFPFCTIDPNEN 136
+ L V + G GKS+F N L + AA T++ +
Sbjct: 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY 101
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 39.0 bits (89), Expect = 5e-04
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVP 140
V IVG PNVGKST N L A + T +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT 49
Score = 38.2 bits (87), Expect = 0.001
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
V IVG PNVGKST N L
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGV 28
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 37.1 bits (85), Expect = 0.002
Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLK 297
+K+ ++G VGKS + F +T + + ++ ++I ++++L+
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK-IKTVDINGKKVKLQ 54
Score = 33.6 bits (76), Expect = 0.027
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN----ENNKVPAFLNVVDIAG 150
+K+ ++G VGKS + ID + N L + D AG
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 37.9 bits (87), Expect = 0.002
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRD--IEIINEELRLKDVEHI 302
L + ++G VGKS+ N + ++ + E L + D +
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGE--RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL 90
Query: 303 EKEINKIEKLVQRGDKKLKPEYVSEVWF 330
+ + + L + + + +
Sbjct: 91 IEGGYINDMALNIIKSFLLDKTIDVLLY 118
Score = 37.1 bits (85), Expect = 0.003
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAA-ENFPFCTIDPNE 135
L + ++G VGKS+ N + + F P
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVM 72
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 36.7 bits (84), Expect = 0.003
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLK 297
K+ ++G VGK+ T+ F G ++ +EI E+++L+
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT-IGVDFMIKTVEINGEKVKLQ 57
Score = 35.9 bits (82), Expect = 0.006
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN----ENNKVPAFLNVVDIAG 150
K+ ++G VGK+ T+ +D E N L + D AG
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 36.4 bits (83), Expect = 0.003
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVR-DIEIINEELRLKDV 299
T LK+ I+G VGKS+ T F+ + + + ++ +L + D
Sbjct: 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 63
Score = 34.8 bits (79), Expect = 0.013
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNEN----NKVPAFLNVVDIAG 150
T LK+ I+G VGKS+ T + E +D + A L + D AG
Sbjct: 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 36.5 bits (83), Expect = 0.004
Identities = 20/189 (10%), Positives = 46/189 (24%), Gaps = 8/189 (4%)
Query: 249 IVGVPNVGKSTFFNVLTKRAFED-DDVTHVEGEV--NPVRDIEIINEELRLKDVEHIEKE 305
+VG+P GK+ LT+ + E + E ++
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIR 66
Query: 306 INKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARY 365
+ K L E F + +
Sbjct: 67 KQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPE 126
Query: 366 GDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATIIPF 425
+N L + + + +D++++ + + + D + I
Sbjct: 127 VIAANIVQVKLGSPDYVNRDSDEA-----TEDFMRRIECYENSYESLDEEQDRDLSYIKI 181
Query: 426 SGVFEHQLV 434
V + +V
Sbjct: 182 MDVGQSYVV 190
Score = 33.0 bits (74), Expect = 0.054
Identities = 22/189 (11%), Positives = 50/189 (26%), Gaps = 31/189 (16%)
Query: 101 IVGVPNVGKSTFFNVLTKS-SAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAEGQ 159
+VG+P GK+ LT+ + + + E
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTREFNVG----QYRRDMVKTYKSFEFFLPDNEEG 62
Query: 160 GLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNL------------------- 200
+ + D L +E F + NT R +
Sbjct: 63 LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESIC 122
Query: 201 ---KLLETRIRDLRRSVD----AKADSKKKMGPKKTDEGEKKMLLGRVGTNLKVGIVGVP 253
+++ I ++ +D + ++ + E + + + +
Sbjct: 123 VDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIM 182
Query: 254 NVGKSTFFN 262
+VG+S N
Sbjct: 183 DVGQSYVVN 191
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 36.3 bits (82), Expect = 0.005
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 98 KVGIVGVPNVGKSTFFNVLT--KSSAAAENFPFCTIDPNENNKVPAFLNV 145
++ + G NVGKS+F N L K+ A + P T N V
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFV 74
Score = 33.2 bits (74), Expect = 0.048
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 246 KVGIVGVPNVGKSTFFNVL 264
++ + G NVGKS+F N L
Sbjct: 25 EIALAGRSNVGKSSFINSL 43
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 35.9 bits (82), Expect = 0.005
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRL 296
K+ ++G VGK+ ++ AF ++ + + +R IE+ + ++L
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFK-IRTIELDGKRIKL 57
Score = 33.6 bits (76), Expect = 0.031
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN----ENNKVPAFLNVVDIAG 150
K+ ++G VGK+ ++ + + ID E + L + D AG
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 35.6 bits (81), Expect = 0.005
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRL 296
K+ I+G +VGK++F +F G V+ I ++ ++L
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSF-TPAFVSTVGIDFKVKTIYRNDKRIKL 56
Score = 34.1 bits (77), Expect = 0.020
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAF----LNVVDIAG 150
K+ I+G +VGK++F S ID L + D AG
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 35.4 bits (80), Expect = 0.007
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276
L++ ++G+ N GK+T + T
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTL 34
Score = 31.9 bits (71), Expect = 0.091
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTK 118
L++ ++G+ N GK+T
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNG 24
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 35.0 bits (79), Expect = 0.008
Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 7/153 (4%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304
+++ +VG+ GK+TF NV+ F +D + +I + +K + +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT-----VGFNMRKITKGNVTIKLWDIGGQ 57
Query: 305 EINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHAR 364
+ V I H + ++ + G+KR
Sbjct: 58 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117
Query: 365 YGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKD 397
IE +N + + Y + S K+
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSI--SCKE 148
Score = 34.3 bits (77), Expect = 0.016
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPN 134
+++ +VG+ GK+TF NV+ + P +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 40
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 35.0 bits (79), Expect = 0.010
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
T++K+ ++G VGKS+ F ++ +
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37
Score = 30.4 bits (67), Expect = 0.38
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 95 TNLKVGIVGVPNVGKSTFFNVLTK 118
T++K+ ++G VGKS+
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVS 25
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 35.1 bits (79), Expect = 0.011
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
LKV I+G VGK++ N + F + +
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 36
Score = 30.4 bits (67), Expect = 0.34
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTK 118
LKV I+G VGK++ N
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVN 24
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 32.8 bits (75), Expect = 0.012
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 469 YFFTAGQDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFDDFKEHGSEAACRAAG 528
G + ++KG+ A ++HTD KGF+ A
Sbjct: 12 LTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFL-----------------YAINAR 54
Query: 529 KYRQQGRAYTVEDGDII 545
R+ G Y ++ DI+
Sbjct: 55 TKRRVGEDYELQFNDIV 71
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 34.3 bits (77), Expect = 0.015
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDD 272
+K+ +VG VGKS+ K F D
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKD 30
Score = 32.0 bits (71), Expect = 0.100
Identities = 17/84 (20%), Positives = 28/84 (33%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAA 156
+K+ +VG VGKS+ K + +D E +V + G
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 157 EGQGLGNAFLSHISACDAIFHLCK 180
E + A+ AC +F
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTD 86
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 35.2 bits (80), Expect = 0.016
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKR-AFEDDDVTHVEGEVNPVRD 286
++ G L++G+ G P GKSTF E V + + +
Sbjct: 47 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT 97
Score = 34.4 bits (78), Expect = 0.026
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKS-SAAAENFPFCTIDPNENNKVPAFLN--- 144
++ G L++G+ G P GKSTF +DP+ + L
Sbjct: 47 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKT 106
Query: 145 -VVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFI 189
+ D+A + LC+ ++ +
Sbjct: 107 RMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIV 152
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 34.5 bits (78), Expect = 0.016
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRL 296
KV +VG VGK+ AF G + +++ +++L
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKL 58
Score = 33.7 bits (76), Expect = 0.026
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAF-----LNVVDIAG 150
KV +VG VGK+ + A F N + L + D AG
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 34.5 bits (78), Expect = 0.018
Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRL 296
K+ ++G VGKS + + +D ++ + G ++ +E+ + ++L
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI-GVDFKIKTVELDGKTVKL 57
Score = 29.8 bits (66), Expect = 0.60
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV------PAFLNVVDIAG 150
K+ ++G VGKS + + + TI + K L + D AG
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYIS--TIGVDFKIKTVELDGKTVKLQIWDTAG 64
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 34.2 bits (77), Expect = 0.019
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276
+++ +VG+ GK+T L T
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 32
Score = 32.7 bits (73), Expect = 0.048
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK 138
+++ +VG+ GK+T L K
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 42
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 34.6 bits (78), Expect = 0.019
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVT 275
V VG+ + GK+ F L + D +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTS 31
Score = 33.5 bits (75), Expect = 0.037
Identities = 27/215 (12%), Positives = 55/215 (25%), Gaps = 13/215 (6%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAE 157
V VG+ + GK+ F L + +I + + L+
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQ-YRDTQT--SITDSSAIYKVNNNRGNSL-TLIDLPGH 57
Query: 158 GQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLLETRIRDLRRSVDAK 217
S+ A+ + + + + + K
Sbjct: 58 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 117
Query: 218 ADSKKKMGPKK-TDEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFED--DDV 274
D K + EK++ RV + + + + + F V
Sbjct: 118 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKV 177
Query: 275 THVEGEVNPVRDIEIINEELRLKDVEHIEKEINKI 309
+E R D++ +EK + KI
Sbjct: 178 EFLECSAKGGRGDTG------SADIQDLEKWLAKI 206
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 34.3 bits (77), Expect = 0.019
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFED 271
+++ I+G+ GK+T L
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVT 32
Score = 32.8 bits (73), Expect = 0.050
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNK 138
+++ I+G+ GK+T L K
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYK 47
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 34.3 bits (77), Expect = 0.020
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 9/182 (4%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLTKRA--FEDDDVTHVEGEVNPVRDIEIINEELRLKDVEH 301
N+ +GI G + GK+T VLT+ A D + + + + +
Sbjct: 5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLV 64
Query: 302 IEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKR 361
+ + V + + + + + I + + D
Sbjct: 65 DAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNA 124
Query: 362 HARYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGAT 421
+ ++ + + + I + +SA K + ++K + A
Sbjct: 125 GTEEIKRTEMIMKSILQSTHNLKNSSI--IPISA-----KTGFGVDELKNLIITTLNNAE 177
Query: 422 II 423
II
Sbjct: 178 II 179
Score = 33.1 bits (74), Expect = 0.045
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAA 123
N+ +GI G + GK+T VLT+ ++ +
Sbjct: 5 NINLGIFGHIDHGKTTLSKVLTEIASTS 32
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 34.3 bits (77), Expect = 0.021
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 3/103 (2%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHI-- 302
LKV I+G VGK++ + + G +++ + +++ V
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKY-SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 303 EKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHE 345
++ + RG Y SF +
Sbjct: 62 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVH 104
Score = 30.8 bits (68), Expect = 0.29
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFC 129
LKV I+G VGK++ + + +
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI 35
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 33.9 bits (76), Expect = 0.024
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVT 275
K+ +G+ N GK+T ++L T
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPT 31
Score = 31.2 bits (69), Expect = 0.17
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 98 KVGIVGVPNVGKSTFFNVLTK 118
K+ +G+ N GK+T ++L
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKN 22
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 34.1 bits (77), Expect = 0.024
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304
+K+ +G VGK+TF T F +T V G + + + + +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV-GIDFREKRVVYNAQGPNGSSGKAFKV 64
Query: 305 EINKIEKLVQRGDKKLKPEY 324
+ + Q + L +
Sbjct: 65 HLQLWDTAGQERFRSLTTAF 84
Score = 28.7 bits (63), Expect = 1.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSS 120
+K+ +G VGK+TF T +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNK 29
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 34.1 bits (77), Expect = 0.040
Identities = 36/266 (13%), Positives = 76/266 (28%), Gaps = 37/266 (13%)
Query: 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCT-IDPNENNK----VPAFL 143
+L + G ++VGI GVP VGKST + L AA + +DP+ +
Sbjct: 44 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 103
Query: 144 NVVDIAGLVKGAAEGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTITIWRNLKLL 203
+ +A + LC+ ++ + +
Sbjct: 104 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVAD 163
Query: 204 ETRIRDLRRSVDAKADSKKKMGP----------KKTDEGEKKMLLGRVGTNLKVGIVGVP 253
T + A + + K D+G+ + + + + +
Sbjct: 164 LTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILT 223
Query: 254 NVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDI--------------------EIINEE 293
+ V+T + + + R +++E
Sbjct: 224 PPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQDVKWMWALVHER 283
Query: 294 L--RLKDVEHIEKEINKIEKLVQRGD 317
L RL + + + E+ V G+
Sbjct: 284 LHQRLVGSAEVRQATAEAERAVAGGE 309
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 33.3 bits (75), Expect = 0.042
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRL 296
KV ++G VGKS + T+ F + + + G R I++ + ++
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-GVEFATRSIQVDGKTIKA 55
Score = 30.2 bits (67), Expect = 0.36
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN 137
KV ++G VGKS + T++ E+ ++ +
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 45
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 33.0 bits (74), Expect = 0.043
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276
K ++G GKS + ++ F+DD
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHT 37
Score = 32.2 bits (72), Expect = 0.077
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 4/58 (6%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAE----NFPFCTIDPNENNKVPAFLNVVDIAG 150
K ++G GKS + + + L + D AG
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 33.1 bits (74), Expect = 0.043
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303
+K +VG VGK+ T AF + + V + ++ L L D E
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64
Score = 28.1 bits (61), Expect = 2.2
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDI 148
+K +VG VGK+ T ++ E P + + N V + +
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 57
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 33.1 bits (74), Expect = 0.052
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAA 123
+ I G N GK++ +LT S
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRP 30
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 32.7 bits (73), Expect = 0.052
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
T K+ +VG VGKS L + F D+ +E
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37
Score = 26.9 bits (58), Expect = 4.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 95 TNLKVGIVGVPNVGKSTFFNVLTKSS 120
T K+ +VG VGKS L ++
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNH 27
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 32.7 bits (73), Expect = 0.056
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
K+ ++G NVGK+ F D +
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 36
Score = 29.6 bits (65), Expect = 0.64
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN 137
K+ ++G NVGK+ +D E
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA 43
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 32.7 bits (73), Expect = 0.064
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV 277
LK +VG VGK+ AF ++ V V
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 42
Score = 27.3 bits (59), Expect = 3.6
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTK 118
LK +VG VGK+
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYAN 31
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 32.3 bits (72), Expect = 0.070
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV 277
LKV ++G VGKS+ + +F+ + +
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI 37
Score = 29.6 bits (65), Expect = 0.59
Identities = 13/84 (15%), Positives = 24/84 (28%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGA 155
LKV ++G VGKS+ + S P + G
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 63
Query: 156 AEGQGLGNAFLSHISACDAIFHLC 179
+ L + +A ++ +
Sbjct: 64 ERFRALAPMYYRGSAAAIIVYDIT 87
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 32.3 bits (72), Expect = 0.077
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNP 283
K+ +VG GK+TF FE V + EV+P
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 42
Score = 28.1 bits (61), Expect = 1.8
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTID 132
K+ +VG GK+TF + ++
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 39
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 32.2 bits (72), Expect = 0.078
Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 9/154 (5%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEK 304
K I+G VGKS + T++ F D H G R IE+ ++++L+ + +
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63
Query: 305 E-INKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHA 363
E + + RG Y ++ +L + + +
Sbjct: 64 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI-------G 116
Query: 364 RYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKD 397
D + + + + SAK
Sbjct: 117 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKT 150
Score = 27.9 bits (61), Expect = 2.4
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCT 130
K I+G VGKS + T+ A+
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG 38
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 32.3 bits (72), Expect = 0.084
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
+K +VG VGK+ T F + V V
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF 37
Score = 27.3 bits (59), Expect = 3.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTK 118
+K +VG VGK+ T
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTT 25
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 32.2 bits (72), Expect = 0.089
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276
KV ++G VGK++ + F D +T
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITT 35
Score = 27.2 bits (59), Expect = 3.5
Identities = 11/86 (12%), Positives = 24/86 (27%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAA 156
KV ++G VGK++ ++ ++ V G
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63
Query: 157 EGQGLGNAFLSHISACDAIFHLCKEK 182
LG + + ++ + E
Sbjct: 64 RFHALGPIYYRDSNGAILVYDITDED 89
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 32.2 bits (72), Expect = 0.093
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
KV ++G VGKS F + +E
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE 37
Score = 26.4 bits (57), Expect = 6.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSS 120
KV ++G VGKS +
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGT 27
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 32.3 bits (72), Expect = 0.094
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276
L++G++G GKS+ + +++ + T
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE 37
Score = 27.3 bits (59), Expect = 4.3
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSS 120
L++G++G GKS+ + S
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGS 29
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.9 bits (71), Expect = 0.097
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV 277
+ +V + G VGKS+ K F + + V
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV 35
Score = 28.0 bits (61), Expect = 2.0
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTK 118
+ +V + G VGKS+ K
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVK 24
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 32.0 bits (71), Expect = 0.10
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 237 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276
LG K+ +G+ N GK+T ++L T
Sbjct: 6 FLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTL 45
Score = 30.8 bits (68), Expect = 0.28
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 89 LLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 118
LG K+ +G+ N GK+T ++L
Sbjct: 6 FLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 35
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 31.9 bits (71), Expect = 0.11
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
K+ ++G VGKS+ K F + + +
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40
Score = 27.7 bits (60), Expect = 3.1
Identities = 12/85 (14%), Positives = 21/85 (24%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAAE 157
K+ ++G VGKS+ K V G
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 158 GQGLGNAFLSHISACDAIFHLCKEK 182
L + A ++ + E+
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEE 92
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.8 bits (71), Expect = 0.13
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV 277
K I+G VGKS T + F+ +
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI 36
Score = 29.5 bits (65), Expect = 0.68
Identities = 11/98 (11%), Positives = 26/98 (26%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIAGLVKGAA 156
K I+G VGKS T + ++ + G
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 157 EGQGLGNAFLSHISACDAIFHLCKEKLRNIFFISLNTI 194
+ + ++ + ++ + + + N L
Sbjct: 64 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA 101
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 31.5 bits (70), Expect = 0.14
Identities = 11/57 (19%), Positives = 19/57 (33%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEH 301
+K+ I G VGKS + F + +E I+ + + D
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAG 59
Score = 27.7 bits (60), Expect = 2.6
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTK 118
+K+ I G VGKS
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLT 24
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 31.4 bits (70), Expect = 0.14
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
KV +VG VGKS F +D
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38
Score = 27.2 bits (59), Expect = 3.8
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSSAAAENFPFC 129
KV +VG VGKS + P
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK 37
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 31.5 bits (70), Expect = 0.15
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
K+ IVG GK+ V +K F + V V
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF 36
Score = 26.5 bits (57), Expect = 7.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTK 118
K+ IVG GK+ V +K
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSK 24
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 31.2 bits (69), Expect = 0.16
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDD 272
+ K+ I+G +VGKS+ + F D
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDS 32
Score = 27.4 bits (59), Expect = 3.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTK 118
+ K+ I+G +VGKS+ +
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVE 26
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 31.6 bits (70), Expect = 0.18
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTKSSAAAE 124
+ V ++G + GK+T + + S+ A+
Sbjct: 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASR 33
Score = 29.7 bits (65), Expect = 0.77
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLTK 266
+ V ++G + GK+T + +
Sbjct: 5 SPIVSVLGHVDHGKTTLLDHIRG 27
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.2 bits (69), Expect = 0.18
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDD 272
K+ +VG VGKS + F D
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQSYFVSD 34
Score = 26.9 bits (58), Expect = 4.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSS 120
K+ +VG VGKS +S
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQSY 30
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 31.1 bits (69), Expect = 0.19
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTK 118
+++ ++G+ N GK+T L
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLAS 38
Score = 31.1 bits (69), Expect = 0.19
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLTK 266
+++ ++G+ N GK+T L
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLAS 38
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 31.1 bits (69), Expect = 0.22
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDD 272
KV ++G VGKS+ N F+
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQ 34
Score = 27.2 bits (59), Expect = 3.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTK 118
KV ++G VGKS+ N
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVT 28
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 31.1 bits (69), Expect = 0.22
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV 277
K+ +G +VGK++ +F++ +
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 33
Score = 26.8 bits (58), Expect = 4.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 98 KVGIVGVPNVGKSTFFNVLTKSS 120
K+ +G +VGK++ S
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDS 24
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 30.8 bits (68), Expect = 0.24
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 244 NLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV 277
K+ +VG GK+ +V K F ++ V V
Sbjct: 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 35
Score = 26.5 bits (57), Expect = 7.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 96 NLKVGIVGVPNVGKSTFFNVLTK 118
K+ +VG GK+ +V K
Sbjct: 2 KCKIVVVGDSQCGKTALLHVFAK 24
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.7 bits (68), Expect = 0.25
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
K+ ++G VGKS + F + +E
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE 37
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.8 bits (68), Expect = 0.27
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
++ +VG VGKS + F D +E
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE 39
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 30.4 bits (67), Expect = 0.31
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHV 277
K+ +VG VGKS ++ F D +
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI 37
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.1 bits (69), Expect = 0.32
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 99 VGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDP 133
V VG GK+T + + +D
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 37
Score = 28.0 bits (61), Expect = 2.4
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 247 VGIVGVPNVGKSTFFNVLTK 266
V VG GK+T +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGR 22
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 30.1 bits (66), Expect = 0.40
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVE 278
KV ++G P VGKS + +
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGH 35
Score = 27.4 bits (59), Expect = 3.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 98 KVGIVGVPNVGKSTFFNVLTK 118
KV ++G P VGKS +
Sbjct: 3 KVLLLGAPGVGKSALARIFGG 23
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 30.0 bits (66), Expect = 0.44
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276
KV IVG+ N GK+T + T
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI 47
Score = 29.2 bits (64), Expect = 0.87
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTK 118
KV IVG+ N GK+T +
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSM 37
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 29.9 bits (66), Expect = 0.47
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTH 276
L++ I+G+ GK+T L T
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTI 49
Score = 27.6 bits (60), Expect = 2.9
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKVPAFLNVVDIA 149
L++ I+G+ GK+T L + P + + LNV D+
Sbjct: 18 LRILILGLDGAGKTTILYRL-QIGEVVTTKPTIGFNVETLSYKNLKLNVWDLG 69
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 30.0 bits (66), Expect = 0.48
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 97 LKVGIVGVPNVGKSTFFNVLT 117
+K+ I G P VGK+T +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIV 21
Score = 30.0 bits (66), Expect = 0.48
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
+K+ I G P VGK+T +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIV 21
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.3 bits (64), Expect = 0.74
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 243 TNLKVGIVGVPNVGKSTFFNVLTKRAFEDDD 273
T +V ++G VGKST N+ D
Sbjct: 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS 32
Score = 27.8 bits (60), Expect = 2.3
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 95 TNLKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCT 130
T +V ++G VGKST N+ + ++
Sbjct: 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVL 37
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 28.7 bits (63), Expect = 1.2
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 247 VGIVGVPNVGKSTFFNVLTKR 267
+VG + GK+T
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAA 24
Score = 27.9 bits (61), Expect = 2.1
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 99 VGIVGVPNVGKSTFFNVLTK 118
+VG + GK+T
Sbjct: 4 WQVVGYKHSGKTTLMEKWVA 23
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 29.0 bits (64), Expect = 1.2
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 239 GRVGTNLKVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEII--NEELRL 296
G ++ I+G+PNVGKST N L K+ ++ + + +EL L
Sbjct: 107 GVKPRAIRALIIGIPNVGKSTLINRLAKK-----NIAKTGDRPGITTSQQWVKVGKELEL 161
Query: 297 KD----VEHIEKEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKN 339
D + ++ +L G K + +V + ++
Sbjct: 162 LDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH 208
Score = 28.3 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 91 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAA 122
G ++ I+G+PNVGKST N L K + A
Sbjct: 107 GVKPRAIRALIIGIPNVGKSTLINRLAKKNIA 138
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 28.7 bits (63), Expect = 1.4
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 13/119 (10%)
Query: 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEI 306
V + G GKST N V D +II ++ +
Sbjct: 6 VALTGGIGSGKSTVANAFADLGI-------------NVIDADIIARQVVEPGAPALHAIA 52
Query: 307 NKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARY 365
+ + D L+ + E F+ + H + + + + + +
Sbjct: 53 DHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLW 111
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.4 bits (62), Expect = 1.6
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 247 VGIVGVPNVGKSTFFNVLTKRAFE 270
+ GK+T L
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCA 28
Score = 27.6 bits (60), Expect = 2.8
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 99 VGIVGVPNVGKSTFFNVLTK 118
+ GK+T L
Sbjct: 5 LAFAAWSGTGKTTLLKKLIP 24
>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 27.5 bits (61), Expect = 1.6
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 382 LTAKTQIYLVNLSAKDYIKKKNKWLPKIKEWVDANDPGATII 423
+TA+ ++Y+ +DY + EW A A +
Sbjct: 1 VTAEIRLYITEGEVEDYRVFLERLEQSGLEWRPATPEDADAV 42
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 28.4 bits (62), Expect = 1.7
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFED 271
+++ ++G+ GK+T L
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVT 39
Score = 26.8 bits (58), Expect = 4.7
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 97 LKVGIVGVPNVGKSTFFNVLT 117
+++ ++G+ GK+T L
Sbjct: 13 MRILMLGLDAAGKTTILYKLK 33
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.0 bits (61), Expect = 2.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 245 LKVGIVGVPNVGKSTFFNVLTKRAFE 270
LK+ ++G GKSTF +
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGS 28
Score = 26.8 bits (58), Expect = 5.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTK 118
LK+ ++G GKSTF +
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRI 24
>d1ry9a_ d.198.1.1 (A:) Surface presentation of antigens protein
SpaK (Spa15) {Shigella flexneri [TaxId: 623]}
Length = 133
Score = 26.6 bits (59), Expect = 4.0
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 143 LNVVDIAGLVKGAAEGQGLGNAFLSHISACDAI-FHLCKEKLRNIFFISLNT--ITIWRN 199
++ +++ LV+ + G + ++ + + AI L + + I I+L + +W N
Sbjct: 1 MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISL--DSMPAI-NIALVNEQVMLWAN 57
Query: 200 L 200
Sbjct: 58 F 58
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 27.2 bits (59), Expect = 4.2
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 4/132 (3%)
Query: 247 VGIVGVPNVGKSTFFNVLTKRA---FEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIE 303
+ + G P GKST L + G + R + + ++ ++
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWL-PQSHQQNRMIMQ 65
Query: 304 KEINKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHA 363
+ + + G + V W + H C +
Sbjct: 66 IAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDS 125
Query: 364 RYGDWSNADIEH 375
AD+
Sbjct: 126 LSDPLVVADLHS 137
>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId:
51453]}
Length = 314
Score = 27.5 bits (60), Expect = 4.9
Identities = 15/112 (13%), Positives = 23/112 (20%), Gaps = 10/112 (8%)
Query: 445 LDEQKATSVLDKIITQGYKSLQLQYF------FTAGQDEVKAWTIQKGTKAPQAAGRIHT 498
+DE K S + I++ G Y G
Sbjct: 26 IDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKK 85
Query: 499 DFEKGFIMAEVMHFDDFKEHGSEAACRA----AGKYRQQGRAYTVEDGDIIF 546
G + G A+ A + G Y D +
Sbjct: 86 VHALGLKLGIYSTAGTATCAGYPASLGYEDVDAADFADWGVDYLKYDNCNVP 137
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 26.8 bits (59), Expect = 6.0
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 7/50 (14%)
Query: 86 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK-------SSAAAENFPF 128
+ G + + G GK+ + + ENFPF
Sbjct: 94 LGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPF 143
Score = 26.8 bits (59), Expect = 7.6
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 234 KKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTK 266
+ G + + G GK+ +
Sbjct: 94 LGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.8 bits (58), Expect = 6.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 97 LKVGIVGVPNVGKSTFFNVLT 117
+K+ ++G GKSTF +
Sbjct: 3 VKILLLGAGESGKSTFLKQMR 23
Score = 26.8 bits (58), Expect = 6.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 245 LKVGIVGVPNVGKSTFFNVLT 265
+K+ ++G GKSTF +
Sbjct: 3 VKILLLGAGESGKSTFLKQMR 23
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.8 bits (58), Expect = 6.4
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 97 LKVGIVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENN 137
+K+ ++G GKST + A + +
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLH 43
>d2ae0x1 b.52.1.4 (X:3-337) Membrane-bound lytic murein
transglycosylase A, MLTA {Escherichia coli [TaxId: 562]}
Length = 335
Score = 27.1 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 511 HFDDFKEHGSEAACRAAGKYRQQGRAY 537
HFD ++ G EA AG Y GR +
Sbjct: 304 HFDIYQGIGPEAG-HRAGWYNHYGRVW 329
>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
485]}
Length = 402
Score = 27.2 bits (60), Expect = 6.4
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 511 HFDDFKEHGSEAACRAAGKYRQQGRAY 537
D F +G EA AGK + G +
Sbjct: 364 RVDYFWGYGDEAG-ELAGKQKTTGYVW 389
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.8 bits (59), Expect = 7.5
Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 17/120 (14%)
Query: 246 KVGIVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKE 305
+ G GKST F++L + F GE I I + + +E+ +
Sbjct: 30 IIAFAGPSGGGKSTIFSLLER--FYQPT----AGE------ITIDGQPIDNISLENWRSQ 77
Query: 306 INKIEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARY 365
I D + + E + + + L ++FV +
Sbjct: 78 IG-----FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.8 bits (58), Expect = 7.8
Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 10/90 (11%)
Query: 49 GDGPKAPKRRKQHLSDKLRPKADSKKKMGPKKTDEGEKKMLLGRVGT-----NLKVGIVG 103
G G K+ L R + T E K++ + V + + G
Sbjct: 2 GQGEFGGAPFKRFL----RGTRIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNG 57
Query: 104 VPNVGKSTFFNVLTKSSAAAENFPFCTIDP 133
GKS L + +DP
Sbjct: 58 ATGTGKSVLLRELAY-TGLLRGDRMVIVDP 86
>d2j73a1 b.3.1.3 (A:6-107) Pullulanase PulA {Thermotoga maritima
[TaxId: 2336]}
Length = 102
Score = 25.5 bits (56), Expect = 8.3
Identities = 4/35 (11%), Positives = 15/35 (42%)
Query: 364 RYGDWSNADIEHLNKLNLLTAKTQIYLVNLSAKDY 398
R +W D+ + + K +++++ + +
Sbjct: 64 RLNEWQAKDVAKDRFIEIKDGKAEVWILQGVEEIF 98
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.1 bits (56), Expect = 8.6
Identities = 15/132 (11%), Positives = 32/132 (24%), Gaps = 1/132 (0%)
Query: 249 IVGVPNVGKSTFFNVLTKRAFEDDDVTHVEGEVNPVRDIEIINEELRLKDVEHIEKEINK 308
I G VGKST L + ++ + + V E + +
Sbjct: 7 ITGPAGVGKSTTCKRLAAQ-LDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL 65
Query: 309 IEKLVQRGDKKLKPEYVSEVWFSFIYLFIKNGHIGHEDALVKIKAFVCEGDKRHARYGDW 368
+ + + + ++ E + + E +R A
Sbjct: 66 TVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD 125
Query: 369 SNADIEHLNKLN 380
L +
Sbjct: 126 EQMGERCLELVE 137
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 26.2 bits (57), Expect = 8.9
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 82 DEGEKKMLLGRVGTNLKVGIVGVPNVGKSTFFNVLTKSSAAAEN 125
+ + + + G VGKS+ N ++ N
Sbjct: 83 KDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTN 126
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.1 bits (56), Expect = 9.3
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 247 VGIVGVPNVGKSTFFNVLTKRAFEDDDV 274
V + G P VGK+T + ++
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVP 31
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.5 bits (58), Expect = 9.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 99 VGIVGVPNVGKSTFFNVLT 117
I+G GKST NV+T
Sbjct: 33 TLIIGPNGSGKSTLINVIT 51
Score = 26.5 bits (58), Expect = 9.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 247 VGIVGVPNVGKSTFFNVLT 265
I+G GKST NV+T
Sbjct: 33 TLIIGPNGSGKSTLINVIT 51
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 26.2 bits (56), Expect = 9.8
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 101 IVGVPNVGKSTFFNVLTKSSAAAENFPFCTIDPNENNKV 139
+V GKS L ++ A + V
Sbjct: 34 LVSPGGAGKSML--ALQLAAQIAGGPDLLEVGELPTGPV 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.400
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,132,961
Number of extensions: 104478
Number of successful extensions: 731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 222
Length of query: 561
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 471
Effective length of database: 1,171,896
Effective search space: 551963016
Effective search space used: 551963016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)