BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17316
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2COB|A Chain A, Solution Structures Of The Hth Domain Of Human Lcor
Protein
Length = 70
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 117 KSWNEEILNVALDALRAGSISANKASKAYGIPSSTL-YKIARKEG 160
+ +N EIL A+ + +G +S +KA YGIP STL YK+ + G
Sbjct: 12 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLG 56
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTL-WQRAHRLG 74
+ + E ++ A+ + +G+MS++KA YGIP +TL ++ RLG
Sbjct: 12 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLG 56
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRSTPRPPP 222
+ E LE A+ + SG+ +V +A + YGIP TL + K T + PP
Sbjct: 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPP 62
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 85 KSWNEEILNVALDALRAGSISANKASKAYG 114
+ +N EIL A+ + +G +S +KA YG
Sbjct: 12 RQYNSEILEEAISVVMSGKMSVSKAQSIYG 41
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 186 IRSGQTTVQRASAEYGIPSGTLYGRCKLSRSTPRPPPGNL 225
+ + TT++ A + + + +Y CK + PRP NL
Sbjct: 189 VLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANL 228
>pdb|1JRM|A Chain A, Nmr Structure Of Mth0637. Ontario Centre For Structural
Proteomics Target Mth0637_1_104; Northeast Structural
Genomics Target Tt135
Length = 104
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 50 MSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEIL 92
+ ++ AS +GIPS W++ + IH+P ++G N EI+
Sbjct: 18 IEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKA---NREII 57
>pdb|2D13|A Chain A, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|B Chain B, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|C Chain C, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|D Chain D, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
Length = 227
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 121 EEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLE 180
E++ NV L+ L+ I A + Y + +AR+ G+++ P AW+ + +
Sbjct: 80 EDLKNV-LEGLKVDGIVAGALASRY--QKERIENVARELGLKVYTP------AWEKDPYQ 130
Query: 181 IALEGIRSGQTTVQRASAEYGI 202
LE I+ G V A + YG+
Sbjct: 131 YMLEIIKLGFKVVFVAVSAYGL 152
>pdb|1VFR|A Chain A, The Major Nad(P)h:fmn Oxidoreductase From Vibrio Fischeri
pdb|1VFR|B Chain B, The Major Nad(P)h:fmn Oxidoreductase From Vibrio Fischeri
Length = 218
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 110 SKAYGPTKSWNEEILNVALDALRAGSISAN 139
SK Y P+K ++E L V L+ALR + S N
Sbjct: 15 SKKYDPSKKVSQEDLAVLLEALRLSASSIN 44
>pdb|1V5Y|A Chain A, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
pdb|1V5Y|B Chain B, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
pdb|1V5Z|A Chain A, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
pdb|1V5Z|B Chain B, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
Length = 217
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 110 SKAYGPTKSWNEEILNVALDALRAGSISAN 139
SK Y P+K ++E L V L+ALR + S N
Sbjct: 14 SKKYDPSKKVSQEDLAVLLEALRLSASSIN 43
>pdb|4AV7|A Chain A, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|B Chain B, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|C Chain C, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|D Chain D, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|E Chain E, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|F Chain F, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
Length = 668
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 20 ETDKAGSLTVTKTWTHEDM--DAALEALRAGQMSLT------KASVSYGIPSTTLWQRAH 71
+TDKA +T W ED+ D AL LR G ++ KA V+ + TL Q A
Sbjct: 561 DTDKAVGHDMTLNWVFEDLKQDIAL-TLRNGVLTQRVGSLNPKADVTVKLTKPTLDQIAA 619
Query: 72 R-LGIHTPKKEGPTK 85
R L + T K+G K
Sbjct: 620 RKLDLPTAIKQGTVK 634
>pdb|2YHE|A Chain A, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|B Chain B, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|C Chain C, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|D Chain D, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|E Chain E, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|F Chain F, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|4AXH|A Chain A, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
pdb|4AXH|B Chain B, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
Length = 668
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 20 ETDKAGSLTVTKTWTHEDM--DAALEALRAGQMSLT------KASVSYGIPSTTLWQRAH 71
+TDKA +T W ED+ D AL LR G ++ KA V+ + TL Q A
Sbjct: 561 DTDKAVGHDMTLNWVFEDLKQDIAL-TLRNGVLTQRVGSLNPKADVTVKLTKPTLDQIAA 619
Query: 72 R-LGIHTPKKEGPTK 85
R L + T K+G K
Sbjct: 620 RKLDLPTAIKQGTVK 634
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,000,792
Number of Sequences: 62578
Number of extensions: 261734
Number of successful extensions: 486
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 34
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)