BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17316
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZPI3|LCOR_MOUSE Ligand-dependent corepressor OS=Mus musculus GN=Lcor PE=2 SV=2
Length = 433
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 100 RAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTL-YKIARK 158
+ G + + K G + +N EIL A+ + +G +S +KA YGIP STL YK+ +
Sbjct: 330 QEGDPGSKQPRKKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKER 389
Query: 159 EG 160
G
Sbjct: 390 LG 391
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 15/89 (16%)
Query: 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTL-WQRAHRLGI--HTPKK------- 80
+ + E ++ A+ + +G+MS++KA YGIP +TL ++ RLG + PKK
Sbjct: 347 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRS 406
Query: 81 EGPTKSWNEEILNVALDALRAGSISANKA 109
EGP S + + LD + SAN++
Sbjct: 407 EGPDVS-----VKIELDPQGEAAQSANES 430
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRSTPRPPP 222
+ E LE A+ + SG+ +V +A + YGIP TL + K T + PP
Sbjct: 349 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPP 397
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 79 KKEGPTKSWNEEILNVALDALRAGSISANKASKAYG 114
KK G + +N EIL A+ + +G +S +KA YG
Sbjct: 341 KKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYG 376
>sp|Q96JN0|LCOR_HUMAN Ligand-dependent corepressor OS=Homo sapiens GN=LCOR PE=1 SV=2
Length = 433
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 100 RAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTL-YKIARK 158
+ G + + K G + +N EIL A+ + +G +S +KA YGIP STL YK+ +
Sbjct: 330 QEGDPGSKQPRKKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKER 389
Query: 159 EG 160
G
Sbjct: 390 LG 391
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 15/89 (16%)
Query: 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTL-WQRAHRLGI--HTPKK------- 80
+ + E ++ A+ + +G+MS++KA YGIP +TL ++ RLG + PKK
Sbjct: 347 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRS 406
Query: 81 EGPTKSWNEEILNVALDALRAGSISANKA 109
EGP S + + LD + SAN++
Sbjct: 407 EGPDVS-----VKIELDPQGEAAQSANES 430
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRSTPRPPP 222
+ E LE A+ + SG+ +V +A + YGIP TL + K T + PP
Sbjct: 349 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPP 397
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 79 KKEGPTKSWNEEILNVALDALRAGSISANKASKAYG 114
KK G + +N EIL A+ + +G +S +KA YG
Sbjct: 341 KKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYG 376
>sp|Q95YM8|MBLK1_APIME Mushroom body large-type Kenyon cell-specific protein 1 OS=Apis
mellifera GN=Mblk-1 PE=1 SV=1
Length = 1598
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGI 75
+ +T E++ AAL +++G++ +A+V YGIP +TL + ++L +
Sbjct: 589 RAYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAM 633
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 33 WTHEDMDAALEALRA---GQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKK 80
+ + D D+ +EA+RA G+MS+ +A YG+P +TL + + P+K
Sbjct: 1040 YRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRK 1090
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 117 KSWNEEILNVALDALRAGSISANKASKAYGIPSSTL----YKIA 156
+++ EE L AL +++G + +A+ YGIP STL YK+A
Sbjct: 589 RAYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLA 632
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 114 GPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTL-YKIARKEGIR 162
G ++++ + L A+ A++ G +S ++A YG+P STL YK+ + +R
Sbjct: 1038 GKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMR 1087
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 173 AWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRC 211
A+ E+L+ AL I+SG+ +RA+ YGIP TL +
Sbjct: 590 AYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKV 628
>sp|Q5ZJK5|LCORL_CHICK Ligand-dependent nuclear receptor corepressor-like protein
OS=Gallus gallus GN=LCORL PE=2 SV=2
Length = 600
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 111 KAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTL-YKIARKEG 160
K G + ++ EI+ A+ + +G +S +KA YG+P STL YK+ + G
Sbjct: 515 KKRGRYRQYDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSG 565
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTL-WQRAHRLG-IHTPKKE 81
+ + HE M+ A+ + +G+MS++KA YG+P +TL ++ R G + TP K+
Sbjct: 521 RQYDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSGTLKTPPKK 573
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRSTPRPPP 222
+ E +E A+ + SG+ +V +A YG+P TL + K T + PP
Sbjct: 523 YDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSGTLKTPP 571
>sp|Q3U285|LCORL_MOUSE Ligand-dependent nuclear receptor corepressor-like protein OS=Mus
musculus GN=Lcorl PE=2 SV=1
Length = 600
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 111 KAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTL-YKIARKEG 160
K G + ++ EI+ A+ + +G +S +KA YG+P STL YK+ + G
Sbjct: 516 KKRGRYRQYDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSG 566
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTL-WQRAHRLG-IHTPKKE 81
+ + HE M+ A+ + +G+MS++KA YG+P +TL ++ R G + TP K+
Sbjct: 522 RQYDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSGTLKTPPKK 574
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRSTPRPPP 222
+ E +E A+ + SG+ +V +A YG+P TL + K T + PP
Sbjct: 524 YDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSGTLKTPP 572
>sp|Q8N3X6|LCORL_HUMAN Ligand-dependent nuclear receptor corepressor-like protein OS=Homo
sapiens GN=LCORL PE=2 SV=4
Length = 602
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 111 KAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTL-YKIARKEG 160
K G + ++ EI+ A+ + +G +S +KA YG+P STL YK+ + G
Sbjct: 517 KKRGRYRQYDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSG 567
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTL-WQRAHRLG-IHTPKKE 81
+ + HE M+ A+ + +G+MS++KA YG+P +TL ++ R G + TP K+
Sbjct: 523 RQYDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSGTLKTPPKK 575
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRSTPRPPP 222
+ E +E A+ + SG+ +V +A YG+P TL + K T + PP
Sbjct: 525 YDHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSGTLKTPP 573
>sp|P15727|NODT_RHILV Nodulation protein T OS=Rhizobium leguminosarum bv. viciae GN=nodT
PE=3 SV=2
Length = 482
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 41/233 (17%)
Query: 9 GLLPSSNYSDGETDKAGSLTVTK---------TWTHE--------------DMDAALEAL 45
GL +S+ + GE K G +T T+ TW + +D+A A+
Sbjct: 95 GLPKASHTTSGEIGKGGDITSTQNISSVQLSLTWLLDVFGQYRRSTESALASLDSAHAAV 154
Query: 46 RAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSIS 105
A +++L K VS I + Q R+ I + ++++ L V AG+ S
Sbjct: 155 DAAKLALIKDLVSSYIDARYYQQ---RVSISRANLKSRQETYDFTNLQV-----EAGAAS 206
Query: 106 ANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYK-IARKEGIRLA 164
+A G +S EI + L+ +SA+ + +PS T+ K + + EG
Sbjct: 207 RQDVLQAEGLVRSTIAEIPRLELNF----RVSAHHIAALLALPSETVIKQLQKSEG---- 258
Query: 165 QP-FNASPTAWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRS 216
QP + A P DL IR + + A+A+ G+ LY LS S
Sbjct: 259 QPVYRGKINAGIPADLIRNRFDIRQAERDLAAATAQIGVAEAQLYPAITLSGS 311
>sp|Q05138|VL1_HPV52 Major capsid protein L1 OS=Human papillomavirus type 52 GN=L1 PE=3
SV=2
Length = 529
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 141 ASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEGIRSGQTTVQRASAEY 200
AS+ YG +L+ R+E + + FN + T P ++ ++G SG T ++SA +
Sbjct: 267 ASEPYG---DSLFFFLRREQMFVRHFFNRAGTLGDPVPGDLYIQGSNSGNTATVQSSAFF 323
Query: 201 GIPSGTL 207
PSG++
Sbjct: 324 PTPSGSM 330
>sp|Q4UM43|SYE1_RICFE Glutamate--tRNA ligase 1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=gltX1 PE=3 SV=1
Length = 447
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 126 VALDALRAGSISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLE 180
+ L+A+ S + S A +P ++ K+A + I F+ SPT ++PEDLE
Sbjct: 257 IGLEAMAIASFFSLLGSSAQILPYKSMEKLANQFEI---SSFSKSPTIYQPEDLE 308
>sp|A8F197|SYE1_RICM5 Glutamate--tRNA ligase 1 OS=Rickettsia massiliae (strain Mtu5)
GN=gltX1 PE=3 SV=1
Length = 447
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 126 VALDALRAGSISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLE 180
V ++A+ S + S A +P ++ K+A + I F+ SPT ++PEDLE
Sbjct: 257 VGIEAMAIASFFSLLGSSAQILPYKSMEKLANQFEI---SSFSKSPTIYQPEDLE 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,127,150
Number of Sequences: 539616
Number of extensions: 3342645
Number of successful extensions: 7364
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7316
Number of HSP's gapped (non-prelim): 57
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)