Query psy17316
Match_columns 229
No_of_seqs 164 out of 312
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:53:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u78_A TC3 transposase, transp 99.4 9.1E-12 3.1E-16 96.8 13.5 99 113-212 1-101 (141)
2 2k27_A Paired box protein PAX- 99.4 6.5E-12 2.2E-16 100.8 12.7 114 100-214 7-135 (159)
3 1u78_A TC3 transposase, transp 99.3 3E-11 1E-15 93.8 13.1 126 30-189 4-132 (141)
4 1k78_A Paired box protein PAX5 99.3 7.2E-11 2.5E-15 93.4 14.1 97 116-213 30-141 (149)
5 1pdn_C Protein (PRD paired); p 99.2 9.3E-11 3.2E-15 89.0 10.9 96 116-212 15-125 (128)
6 1k78_A Paired box protein PAX5 99.2 3E-10 1E-14 89.9 12.0 118 13-159 12-142 (149)
7 2cob_A LCOR protein; MLR2, KIA 99.2 1.3E-10 4.5E-15 81.8 8.4 50 27-76 8-57 (70)
8 1pdn_C Protein (PRD paired); p 99.1 2.2E-10 7.7E-15 86.8 8.4 99 29-159 14-127 (128)
9 2k27_A Paired box protein PAX- 99.0 2.3E-09 8E-14 85.8 12.1 101 30-159 23-135 (159)
10 2cob_A LCOR protein; MLR2, KIA 98.9 4.4E-09 1.5E-13 74.0 7.5 53 113-165 8-60 (70)
11 2jn6_A Protein CGL2762, transp 98.7 2.4E-08 8.2E-13 73.6 6.3 52 29-80 2-54 (97)
12 2glo_A Brinker CG9653-PA; prot 98.6 4.3E-08 1.5E-12 66.3 4.8 45 114-159 1-49 (59)
13 2glo_A Brinker CG9653-PA; prot 98.5 9.7E-08 3.3E-12 64.5 4.7 43 30-73 3-49 (59)
14 2elh_A CG11849-PA, LD40883P; s 98.5 2.9E-07 9.9E-12 66.9 7.4 46 28-74 18-63 (87)
15 2jn6_A Protein CGL2762, transp 98.5 2E-07 6.9E-12 68.6 6.1 44 117-160 4-48 (97)
16 2jrt_A Uncharacterized protein 98.5 4.9E-07 1.7E-11 67.5 8.1 57 27-83 27-83 (95)
17 2rn7_A IS629 ORFA; helix, all 98.5 2E-07 6.9E-12 69.9 5.9 45 169-213 2-53 (108)
18 2elh_A CG11849-PA, LD40883P; s 98.3 7.8E-07 2.7E-11 64.6 6.2 43 116-159 20-62 (87)
19 2rn7_A IS629 ORFA; helix, all 98.3 3.3E-07 1.1E-11 68.6 3.5 48 30-77 4-58 (108)
20 1tc3_C Protein (TC3 transposas 98.3 2.7E-06 9.3E-11 53.6 6.9 44 170-214 2-45 (51)
21 1tc3_C Protein (TC3 transposas 98.3 2.1E-06 7.3E-11 54.1 6.1 45 114-159 1-45 (51)
22 1jko_C HIN recombinase, DNA-in 98.2 7E-07 2.4E-11 57.2 3.5 47 114-161 1-47 (52)
23 2jrt_A Uncharacterized protein 98.2 3.5E-06 1.2E-10 62.8 7.2 45 170-214 29-73 (95)
24 3hot_A Transposable element ma 98.2 3.4E-05 1.2E-09 67.9 14.8 124 34-188 7-138 (345)
25 1jko_C HIN recombinase, DNA-in 98.1 4.2E-06 1.4E-10 53.4 4.3 43 170-213 2-44 (52)
26 3hot_A Transposable element ma 98.0 4.3E-05 1.5E-09 67.2 12.2 91 119-212 7-108 (345)
27 1hlv_A CENP-B, major centromer 98.0 7E-06 2.4E-10 63.0 6.2 45 29-73 4-49 (131)
28 2oa4_A SIR5; structure, struct 97.9 2.9E-05 1E-09 58.4 7.8 57 27-83 28-84 (101)
29 1hlv_A CENP-B, major centromer 97.9 2.4E-05 8.1E-10 60.0 6.8 42 171-212 5-47 (131)
30 2oa4_A SIR5; structure, struct 97.8 4.5E-05 1.5E-09 57.4 6.2 55 143-216 22-76 (101)
31 2ao9_A Phage protein; structur 97.7 4E-05 1.4E-09 61.9 4.7 43 30-72 21-71 (155)
32 4dyq_A Gene 1 protein; GP1, oc 97.7 3.2E-05 1.1E-09 61.0 4.1 48 111-159 5-53 (140)
33 2ao9_A Phage protein; structur 97.5 0.00014 4.8E-09 58.7 5.4 42 171-212 21-70 (155)
34 3oou_A LIN2118 protein; protei 97.4 0.0042 1.4E-07 45.8 12.1 89 37-163 9-100 (108)
35 3uj3_X DNA-invertase; helix-tu 97.4 2.5E-05 8.7E-10 64.1 -0.2 60 100-160 124-183 (193)
36 3lsg_A Two-component response 97.4 0.0049 1.7E-07 44.9 12.3 89 37-163 6-98 (103)
37 3e7l_A Transcriptional regulat 97.2 0.00068 2.3E-08 46.0 5.9 38 40-77 23-60 (63)
38 3mn2_A Probable ARAC family tr 97.2 0.0086 2.9E-07 44.0 12.3 89 37-163 6-99 (108)
39 1g2h_A Transcriptional regulat 97.2 0.0012 4.3E-08 44.5 6.9 39 37-76 22-60 (61)
40 3mkl_A HTH-type transcriptiona 97.1 0.0058 2E-07 45.9 11.0 87 39-163 13-101 (120)
41 3oio_A Transcriptional regulat 97.1 0.0058 2E-07 45.4 10.6 88 38-163 9-102 (113)
42 4dyq_A Gene 1 protein; GP1, oc 97.1 0.00041 1.4E-08 54.6 4.2 44 168-212 7-51 (140)
43 2k9s_A Arabinose operon regula 97.1 0.01 3.5E-07 43.6 11.6 87 39-163 9-99 (107)
44 1gdt_A GD resolvase, protein ( 97.1 0.0016 5.4E-08 52.8 7.6 64 91-158 118-181 (183)
45 2r0q_C Putative transposon TN5 97.0 0.00065 2.2E-08 56.4 5.0 60 99-159 132-199 (209)
46 1umq_A Photosynthetic apparatu 97.0 0.0015 5.1E-08 47.1 5.9 35 41-75 46-80 (81)
47 3plo_X DNA-invertase; resolvas 96.9 0.00017 5.7E-09 59.3 0.4 59 101-160 125-183 (193)
48 2x48_A CAG38821; archeal virus 96.9 0.001 3.4E-08 43.3 4.1 36 35-71 18-53 (55)
49 1bl0_A Protein (multiple antib 96.8 0.012 4E-07 44.9 10.4 92 34-163 9-106 (129)
50 2x48_A CAG38821; archeal virus 96.7 0.0032 1.1E-07 40.8 5.4 36 176-212 18-53 (55)
51 1ntc_A Protein (nitrogen regul 96.7 0.0011 3.8E-08 48.3 3.3 33 43-75 58-90 (91)
52 4ich_A Transcriptional regulat 96.7 0.0018 6E-08 56.0 5.0 34 38-71 31-65 (311)
53 2jml_A DNA binding domain/tran 96.6 0.0047 1.6E-07 43.7 5.9 30 49-78 5-34 (81)
54 1vz0_A PARB, chromosome partit 96.5 0.015 5E-07 49.4 9.8 92 30-141 115-206 (230)
55 3lsg_A Two-component response 96.4 0.013 4.4E-07 42.6 7.9 71 133-211 17-89 (103)
56 1eto_A FIS, factor for inversi 96.4 0.0047 1.6E-07 45.9 5.3 32 44-75 66-97 (98)
57 2jml_A DNA binding domain/tran 96.4 0.0077 2.6E-07 42.6 6.1 65 136-200 6-74 (81)
58 3oou_A LIN2118 protein; protei 96.3 0.015 5.3E-07 42.6 7.9 71 132-210 18-90 (108)
59 3e7l_A Transcriptional regulat 96.3 0.0098 3.4E-07 40.1 6.1 35 130-164 27-61 (63)
60 1iuf_A Centromere ABP1 protein 96.2 0.0036 1.2E-07 49.2 4.0 46 27-72 6-59 (144)
61 3gbg_A TCP pilus virulence reg 96.2 0.043 1.5E-06 46.3 10.9 90 37-164 173-264 (276)
62 3oio_A Transcriptional regulat 96.2 0.017 5.9E-07 42.7 7.4 80 124-211 9-93 (113)
63 3mn2_A Probable ARAC family tr 96.2 0.021 7.3E-07 41.8 7.8 72 132-211 15-90 (108)
64 4fcy_A Transposase; rnaseh, DD 96.1 0.029 9.8E-07 52.2 10.4 33 42-74 41-77 (529)
65 2vz4_A Tipal, HTH-type transcr 95.9 0.033 1.1E-06 41.4 8.0 70 49-149 1-72 (108)
66 3uj3_X DNA-invertase; helix-tu 95.9 0.0013 4.4E-08 53.8 0.0 51 169-220 138-188 (193)
67 1bl0_A Protein (multiple antib 95.8 0.028 9.7E-07 42.6 7.4 82 121-210 10-96 (129)
68 2k9s_A Arabinose operon regula 95.8 0.03 1E-06 41.0 7.1 79 134-220 19-99 (107)
69 4fcy_A Transposase; rnaseh, DD 95.7 0.13 4.3E-06 47.8 12.8 86 127-212 40-153 (529)
70 1jhg_A Trp operon repressor; c 95.7 0.014 4.9E-07 43.6 4.9 33 39-71 48-80 (101)
71 2heo_A Z-DNA binding protein 1 95.6 0.019 6.5E-07 39.2 5.0 40 178-217 11-53 (67)
72 1r8d_A Transcription activator 95.6 0.043 1.5E-06 40.8 7.3 68 50-148 3-72 (109)
73 1iuf_A Centromere ABP1 protein 95.5 0.009 3.1E-07 46.8 3.5 43 170-212 8-58 (144)
74 4fe7_A Xylose operon regulator 95.5 0.15 5E-06 45.6 11.9 87 39-163 311-400 (412)
75 2vz4_A Tipal, HTH-type transcr 95.3 0.058 2E-06 40.1 7.3 68 136-204 2-72 (108)
76 2o8x_A Probable RNA polymerase 95.3 0.033 1.1E-06 37.2 5.4 41 31-72 14-54 (70)
77 3mkl_A HTH-type transcriptiona 95.3 0.053 1.8E-06 40.5 7.1 78 124-209 9-90 (120)
78 1q06_A Transcriptional regulat 95.3 0.06 2.1E-06 41.7 7.6 24 50-73 1-24 (135)
79 1oyi_A Double-stranded RNA-bin 95.3 0.018 6.2E-07 41.5 4.1 41 36-76 17-57 (82)
80 1umq_A Photosynthetic apparatu 95.3 0.03 1E-06 40.1 5.3 38 176-213 40-77 (81)
81 3gp4_A Transcriptional regulat 95.0 0.11 3.9E-06 40.6 8.5 27 49-76 2-28 (142)
82 1oyi_A Double-stranded RNA-bin 95.0 0.029 9.8E-07 40.4 4.5 37 176-212 16-52 (82)
83 1d5y_A ROB transcription facto 95.0 0.13 4.3E-06 43.7 9.5 75 47-159 17-93 (292)
84 1r8d_A Transcription activator 95.0 0.057 1.9E-06 40.1 6.4 68 136-204 3-73 (109)
85 1ntc_A Protein (nitrogen regul 95.0 0.025 8.6E-07 40.9 4.3 35 178-212 52-86 (91)
86 1y0u_A Arsenical resistance op 95.0 0.042 1.4E-06 39.5 5.4 35 177-212 31-65 (96)
87 1g2h_A Transcriptional regulat 95.0 0.042 1.4E-06 36.8 5.0 37 175-212 19-55 (61)
88 1j9i_A GPNU1 DBD;, terminase s 95.0 0.018 6.1E-07 39.3 3.2 46 50-96 3-50 (68)
89 2l1p_A DNA-binding protein SAT 95.0 0.062 2.1E-06 38.6 6.1 46 26-72 10-55 (83)
90 1z4h_A TORI, TOR inhibition pr 94.9 0.02 6.7E-07 38.9 3.3 46 49-94 10-55 (66)
91 1fse_A GERE; helix-turn-helix 94.8 0.06 2E-06 36.3 5.7 40 31-72 10-49 (74)
92 1jhg_A Trp operon repressor; c 94.8 0.046 1.6E-06 40.8 5.4 33 179-211 47-79 (101)
93 3hh0_A Transcriptional regulat 94.8 0.09 3.1E-06 41.4 7.4 70 49-149 4-75 (146)
94 1q06_A Transcriptional regulat 94.7 0.091 3.1E-06 40.7 7.1 65 136-201 1-68 (135)
95 3gp4_A Transcriptional regulat 94.7 0.15 5E-06 39.9 8.2 65 136-201 3-70 (142)
96 1neq_A DNA-binding protein NER 94.5 0.059 2E-06 37.5 5.1 39 30-71 6-44 (74)
97 1qbj_A Protein (double-strande 94.5 0.026 8.9E-07 40.3 3.2 27 49-75 27-53 (81)
98 2w7n_A TRFB transcriptional re 94.4 0.063 2.2E-06 40.0 5.3 36 37-72 22-57 (101)
99 1s7o_A Hypothetical UPF0122 pr 94.4 0.062 2.1E-06 40.5 5.4 40 32-72 22-61 (113)
100 2jpc_A SSRB; DNA binding prote 94.4 0.044 1.5E-06 35.7 4.0 32 40-72 5-36 (61)
101 2l0k_A Stage III sporulation p 94.4 0.041 1.4E-06 40.4 4.2 40 33-72 4-43 (93)
102 3hh0_A Transcriptional regulat 94.4 0.11 3.8E-06 40.9 7.0 69 135-204 4-75 (146)
103 1qgp_A Protein (double strande 94.3 0.029 1E-06 39.5 3.2 35 39-73 17-55 (77)
104 2hin_A GP39, repressor protein 94.3 0.063 2.1E-06 37.4 4.8 30 39-72 4-33 (71)
105 3plo_X DNA-invertase; resolvas 94.2 0.0081 2.8E-07 49.1 0.0 50 25-75 134-184 (193)
106 2jpc_A SSRB; DNA binding prote 94.2 0.054 1.8E-06 35.3 4.1 32 180-212 4-35 (61)
107 3gpv_A Transcriptional regulat 94.2 0.13 4.4E-06 40.5 6.9 67 49-146 16-84 (148)
108 2htj_A P fimbrial regulatory p 94.2 0.069 2.3E-06 37.3 4.8 34 179-212 2-36 (81)
109 3jth_A Transcription activator 94.2 0.044 1.5E-06 39.3 3.9 36 177-212 23-58 (98)
110 3pqk_A Biofilm growth-associat 94.1 0.073 2.5E-06 38.5 5.1 36 177-212 23-58 (102)
111 2heo_A Z-DNA binding protein 1 94.1 0.058 2E-06 36.7 4.2 36 40-75 14-51 (67)
112 2o8x_A Probable RNA polymerase 94.0 0.094 3.2E-06 34.8 5.1 38 174-212 16-53 (70)
113 3hug_A RNA polymerase sigma fa 93.9 0.093 3.2E-06 37.4 5.2 40 32-72 37-76 (92)
114 1je8_A Nitrate/nitrite respons 93.9 0.15 5E-06 35.8 6.1 54 125-190 27-80 (82)
115 2p7v_B Sigma-70, RNA polymeras 93.9 0.094 3.2E-06 35.2 4.9 39 33-72 6-48 (68)
116 1x3u_A Transcriptional regulat 93.9 0.12 4.1E-06 35.3 5.6 32 180-212 22-53 (79)
117 3gpv_A Transcriptional regulat 93.8 0.15 5.1E-06 40.1 6.7 66 135-201 16-84 (148)
118 1p4w_A RCSB; solution structur 93.8 0.12 4.1E-06 38.0 5.7 39 172-212 33-71 (99)
119 1fse_A GERE; helix-turn-helix 93.8 0.12 4E-06 34.7 5.3 38 173-212 11-48 (74)
120 1y0u_A Arsenical resistance op 93.8 0.096 3.3E-06 37.5 5.1 35 38-73 33-67 (96)
121 2fu4_A Ferric uptake regulatio 93.8 0.079 2.7E-06 36.9 4.5 36 177-212 17-60 (83)
122 1s7o_A Hypothetical UPF0122 pr 93.7 0.12 4.1E-06 38.9 5.7 38 174-212 23-60 (113)
123 1r1u_A CZRA, repressor protein 93.7 0.11 3.9E-06 37.9 5.4 36 177-212 26-61 (106)
124 2l0k_A Stage III sporulation p 93.7 0.08 2.7E-06 38.8 4.5 38 176-213 6-43 (93)
125 1ku3_A Sigma factor SIGA; heli 93.6 0.13 4.3E-06 35.0 5.3 42 31-72 9-53 (73)
126 1z4h_A TORI, TOR inhibition pr 93.5 0.052 1.8E-06 36.8 3.1 49 136-185 11-59 (66)
127 2vxz_A Pyrsv_GP04; viral prote 93.5 0.085 2.9E-06 42.2 4.6 42 177-218 11-53 (165)
128 1qbj_A Protein (double-strande 93.5 0.12 4E-06 36.8 5.0 37 176-212 9-49 (81)
129 1je8_A Nitrate/nitrite respons 93.4 0.11 3.9E-06 36.4 4.8 38 173-212 21-58 (82)
130 2w7n_A TRFB transcriptional re 93.4 0.42 1.4E-05 35.5 8.1 53 86-157 4-56 (101)
131 2oqg_A Possible transcriptiona 93.4 0.13 4.5E-06 37.5 5.3 36 177-212 21-56 (114)
132 3gbg_A TCP pilus virulence reg 93.3 0.19 6.6E-06 42.2 7.0 81 123-211 170-254 (276)
133 2d1h_A ST1889, 109AA long hypo 93.3 0.12 4.1E-06 36.8 4.9 42 32-73 18-60 (109)
134 2zhg_A Redox-sensitive transcr 93.3 0.11 3.8E-06 41.2 5.1 26 47-72 9-34 (154)
135 1gdt_A GD resolvase, protein ( 93.3 0.14 4.9E-06 41.0 5.8 40 170-213 142-181 (183)
136 3kz3_A Repressor protein CI; f 93.3 0.062 2.1E-06 37.0 3.2 25 47-71 23-47 (80)
137 2htj_A P fimbrial regulatory p 93.2 0.13 4.5E-06 35.7 4.9 27 47-73 12-38 (81)
138 1qgp_A Protein (double strande 93.2 0.074 2.5E-06 37.4 3.5 37 176-212 13-53 (77)
139 1eto_A FIS, factor for inversi 93.2 0.14 4.9E-06 37.7 5.2 36 178-213 59-94 (98)
140 1x3u_A Transcriptional regulat 93.2 0.13 4.3E-06 35.2 4.7 37 34-72 18-54 (79)
141 2r0q_C Putative transposon TN5 93.1 0.35 1.2E-05 39.6 8.2 32 180-212 166-197 (209)
142 2hin_A GP39, repressor protein 93.1 0.16 5.5E-06 35.3 5.1 51 124-192 3-53 (71)
143 3f6o_A Probable transcriptiona 93.0 0.081 2.8E-06 39.5 3.8 42 176-217 17-59 (118)
144 2dg6_A Putative transcriptiona 93.0 0.35 1.2E-05 40.7 8.1 65 136-201 1-69 (222)
145 2dg6_A Putative transcriptiona 93.0 0.32 1.1E-05 41.0 7.8 24 50-73 1-24 (222)
146 1zx4_A P1 PARB, plasmid partit 93.0 0.16 5.5E-06 42.0 5.8 43 32-74 7-49 (192)
147 1p4w_A RCSB; solution structur 93.0 0.22 7.7E-06 36.5 6.1 41 30-72 32-72 (99)
148 3c57_A Two component transcrip 92.9 0.12 4.2E-06 37.3 4.5 40 31-72 26-65 (95)
149 2pjp_A Selenocysteine-specific 92.9 0.13 4.4E-06 38.9 4.8 93 44-164 15-112 (121)
150 1d5y_A ROB transcription facto 92.9 0.19 6.3E-06 42.6 6.3 79 124-210 5-88 (292)
151 2p7v_B Sigma-70, RNA polymeras 92.9 0.15 5E-06 34.2 4.5 37 175-212 7-47 (68)
152 2p5k_A Arginine repressor; DNA 92.9 0.27 9.3E-06 32.1 5.8 36 177-212 4-46 (64)
153 2oqg_A Possible transcriptiona 92.9 0.13 4.6E-06 37.4 4.7 37 38-74 23-59 (114)
154 1r1u_A CZRA, repressor protein 92.8 0.14 4.9E-06 37.3 4.8 39 36-74 26-64 (106)
155 3m8j_A FOCB protein; all-alpha 92.8 0.2 6.7E-06 38.0 5.5 43 31-73 42-84 (111)
156 1tty_A Sigma-A, RNA polymerase 92.8 0.19 6.6E-06 35.5 5.3 41 32-72 18-61 (87)
157 3pqk_A Biofilm growth-associat 92.7 0.16 5.3E-06 36.7 4.8 38 36-73 23-60 (102)
158 3fmy_A HTH-type transcriptiona 92.6 0.16 5.5E-06 34.5 4.6 37 32-71 10-46 (73)
159 2kko_A Possible transcriptiona 92.6 0.083 2.8E-06 38.9 3.3 34 179-212 27-60 (108)
160 3cuo_A Uncharacterized HTH-typ 92.6 0.15 5.2E-06 36.0 4.6 36 177-212 24-60 (99)
161 3frw_A Putative Trp repressor 92.6 0.19 6.6E-06 37.8 5.2 35 177-212 46-80 (107)
162 1ku3_A Sigma factor SIGA; heli 92.6 0.21 7.2E-06 33.9 5.1 38 174-212 11-52 (73)
163 2zhg_A Redox-sensitive transcr 92.5 0.2 6.8E-06 39.7 5.6 68 133-202 9-79 (154)
164 2cw1_A SN4M; lambda CRO fold, 92.5 0.14 4.7E-06 35.0 4.0 30 42-72 7-36 (65)
165 3hug_A RNA polymerase sigma fa 92.5 0.2 6.7E-06 35.6 5.1 34 179-212 42-75 (92)
166 1uxc_A FRUR (1-57), fructose r 92.5 0.23 7.9E-06 33.7 5.1 23 50-72 1-23 (65)
167 3mzy_A RNA polymerase sigma-H 92.4 0.17 5.9E-06 38.4 5.0 39 32-72 109-147 (164)
168 1xsv_A Hypothetical UPF0122 pr 92.4 0.22 7.6E-06 37.3 5.4 40 32-72 25-64 (113)
169 1xn7_A Hypothetical protein YH 92.4 0.19 6.4E-06 35.5 4.7 34 179-212 4-38 (78)
170 3ulq_B Transcriptional regulat 92.2 0.2 7E-06 36.0 4.9 38 173-212 29-66 (90)
171 1r71_A Transcriptional repress 92.2 0.64 2.2E-05 37.8 8.4 44 30-73 33-76 (178)
172 2p5k_A Arginine repressor; DNA 92.2 0.38 1.3E-05 31.4 5.9 40 36-75 4-50 (64)
173 3kor_A Possible Trp repressor; 92.2 0.22 7.6E-06 38.2 5.2 35 177-212 63-97 (119)
174 3qao_A LMO0526 protein, MERR-l 92.1 0.37 1.3E-05 41.2 7.2 30 48-78 2-31 (249)
175 2jsc_A Transcriptional regulat 92.1 0.16 5.4E-06 38.0 4.4 41 177-217 21-62 (118)
176 1u2w_A CADC repressor, cadmium 92.1 0.21 7E-06 37.6 5.0 41 177-217 42-84 (122)
177 3jth_A Transcription activator 92.0 0.1 3.5E-06 37.3 3.1 38 37-74 24-61 (98)
178 1r1t_A Transcriptional repress 92.0 0.22 7.5E-06 37.6 5.1 36 177-212 46-81 (122)
179 2kko_A Possible transcriptiona 92.0 0.12 4.2E-06 38.0 3.5 35 39-73 28-62 (108)
180 3c57_A Two component transcrip 92.0 0.27 9.1E-06 35.4 5.3 38 173-212 27-64 (95)
181 2wiu_B HTH-type transcriptiona 92.0 0.31 1E-05 33.6 5.5 40 32-71 7-47 (88)
182 3kor_A Possible Trp repressor; 91.9 0.27 9.3E-06 37.7 5.5 33 39-72 66-98 (119)
183 2rnj_A Response regulator prot 91.9 0.14 4.7E-06 36.5 3.6 41 30-72 27-67 (91)
184 1j9i_A GPNU1 DBD;, terminase s 91.9 0.12 4.1E-06 35.0 3.2 23 191-213 3-25 (68)
185 2rnj_A Response regulator prot 91.9 0.15 5.2E-06 36.2 3.8 37 174-212 30-66 (91)
186 4fe7_A Xylose operon regulator 91.9 0.51 1.8E-05 42.0 8.2 92 121-220 304-400 (412)
187 3frw_A Putative Trp repressor 91.8 0.28 9.4E-06 37.0 5.2 34 39-73 49-82 (107)
188 2jt1_A PEFI protein; solution 91.8 0.14 4.7E-06 36.2 3.4 43 32-74 3-49 (77)
189 2jt1_A PEFI protein; solution 91.7 0.21 7.1E-06 35.2 4.3 34 179-212 6-46 (77)
190 2o3f_A Putative HTH-type trans 91.7 0.29 9.9E-06 36.6 5.4 30 49-78 39-68 (111)
191 1rzs_A Antirepressor, regulato 91.7 0.06 2.1E-06 35.9 1.4 22 49-70 10-31 (61)
192 2xi8_A Putative transcription 91.6 0.15 5E-06 33.1 3.3 26 46-71 11-36 (66)
193 3mzy_A RNA polymerase sigma-H 91.5 0.25 8.5E-06 37.5 5.0 35 176-212 112-146 (164)
194 2k02_A Ferrous iron transport 91.5 0.24 8.1E-06 35.9 4.5 34 179-212 4-38 (87)
195 3cuo_A Uncharacterized HTH-typ 91.5 0.19 6.6E-06 35.4 4.0 35 39-73 27-62 (99)
196 1xsv_A Hypothetical UPF0122 pr 91.5 0.29 9.8E-06 36.6 5.1 34 179-212 30-63 (113)
197 2d1h_A ST1889, 109AA long hypo 91.4 0.33 1.1E-05 34.4 5.3 37 176-212 21-58 (109)
198 1r69_A Repressor protein CI; g 91.4 0.37 1.3E-05 31.4 5.1 35 182-216 6-40 (69)
199 1tty_A Sigma-A, RNA polymerase 91.2 0.35 1.2E-05 34.1 5.1 37 175-212 20-60 (87)
200 2lkp_A Transcriptional regulat 91.2 0.27 9.2E-06 36.3 4.7 35 39-73 35-69 (119)
201 2pij_A Prophage PFL 6 CRO; tra 91.1 0.24 8.2E-06 32.6 4.0 27 45-72 10-36 (67)
202 1lmb_3 Protein (lambda repress 91.1 0.29 9.8E-06 34.2 4.6 42 30-71 4-52 (92)
203 2jsc_A Transcriptional regulat 91.1 0.23 7.9E-06 37.0 4.3 42 36-77 21-62 (118)
204 3ulq_B Transcriptional regulat 91.0 0.31 1.1E-05 34.9 4.7 42 29-72 26-67 (90)
205 3qao_A LMO0526 protein, MERR-l 91.0 0.54 1.9E-05 40.1 7.0 70 134-204 2-74 (249)
206 3b7h_A Prophage LP1 protein 11 90.8 0.62 2.1E-05 31.1 5.9 37 179-215 9-45 (78)
207 3omt_A Uncharacterized protein 90.8 0.15 5.2E-06 34.2 2.8 25 47-71 19-43 (73)
208 2ia0_A Putative HTH-type trans 90.7 0.44 1.5E-05 38.0 5.9 44 29-73 11-55 (171)
209 1r69_A Repressor protein CI; g 90.7 0.2 6.9E-06 32.8 3.3 26 46-71 11-36 (69)
210 3r0a_A Putative transcriptiona 90.7 0.33 1.1E-05 36.6 4.8 28 46-73 37-66 (123)
211 1zug_A Phage 434 CRO protein; 90.6 0.52 1.8E-05 30.8 5.4 34 183-216 9-42 (71)
212 2l8n_A Transcriptional repress 90.6 0.33 1.1E-05 33.1 4.4 40 49-99 9-48 (67)
213 1sfu_A 34L protein; protein/Z- 90.6 0.22 7.5E-06 35.2 3.4 38 36-73 15-53 (75)
214 3osg_A MYB21; transcription-DN 90.6 3.1 0.00011 31.4 10.4 88 117-212 12-104 (126)
215 1b0n_A Protein (SINR protein); 90.6 0.4 1.4E-05 34.5 5.1 26 46-71 11-36 (111)
216 1ojl_A Transcriptional regulat 90.5 0.18 6E-06 43.8 3.6 34 38-71 270-303 (304)
217 1ub9_A Hypothetical protein PH 90.5 0.34 1.2E-05 34.1 4.5 36 177-212 16-52 (100)
218 3i4p_A Transcriptional regulat 90.4 0.28 9.7E-06 38.6 4.4 34 40-73 7-41 (162)
219 2w48_A Sorbitol operon regulat 90.4 0.38 1.3E-05 41.9 5.7 38 36-73 8-45 (315)
220 3bs3_A Putative DNA-binding pr 90.4 0.22 7.7E-06 33.2 3.3 26 46-71 20-45 (76)
221 2zkz_A Transcriptional repress 90.4 0.38 1.3E-05 34.7 4.8 36 177-212 27-63 (99)
222 2ofy_A Putative XRE-family tra 90.3 0.55 1.9E-05 32.3 5.5 32 39-71 18-49 (86)
223 1zug_A Phage 434 CRO protein; 90.3 0.23 7.8E-06 32.7 3.3 26 46-71 13-38 (71)
224 1r1t_A Transcriptional repress 90.3 0.37 1.3E-05 36.3 4.8 34 40-73 50-83 (122)
225 3trb_A Virulence-associated pr 90.2 0.66 2.2E-05 34.1 6.0 27 45-71 23-49 (104)
226 1q1h_A TFE, transcription fact 90.2 0.32 1.1E-05 35.4 4.3 35 39-73 21-57 (110)
227 2ovg_A Phage lambda CRO; trans 90.1 0.16 5.5E-06 34.7 2.4 30 42-72 7-36 (66)
228 3op9_A PLI0006 protein; struct 90.1 0.39 1.3E-05 35.1 4.7 25 47-71 20-44 (114)
229 1u2w_A CADC repressor, cadmium 90.1 0.32 1.1E-05 36.5 4.3 35 39-73 45-80 (122)
230 2pij_A Prophage PFL 6 CRO; tra 90.0 0.37 1.3E-05 31.7 4.1 32 183-215 7-38 (67)
231 2lkp_A Transcriptional regulat 90.0 0.48 1.6E-05 34.9 5.1 36 177-212 32-67 (119)
232 1sfx_A Conserved hypothetical 89.9 0.63 2.2E-05 32.8 5.7 28 46-73 31-58 (109)
233 1ojl_A Transcriptional regulat 89.9 0.3 1E-05 42.3 4.6 37 176-212 267-303 (304)
234 1x57_A Endothelial differentia 89.9 0.48 1.6E-05 33.1 4.9 34 38-71 14-48 (91)
235 1xn7_A Hypothetical protein YH 89.9 0.58 2E-05 33.0 5.2 27 47-73 14-40 (78)
236 3f6o_A Probable transcriptiona 89.8 0.23 7.8E-06 37.0 3.3 39 36-74 18-56 (118)
237 3ivp_A Putative transposon-rel 89.8 1.2 4.1E-05 33.0 7.3 38 34-71 9-47 (126)
238 3b7h_A Prophage LP1 protein 11 89.7 0.43 1.5E-05 32.0 4.3 34 38-71 8-42 (78)
239 1uxc_A FRUR (1-57), fructose r 89.7 0.4 1.4E-05 32.5 4.1 53 136-197 1-53 (65)
240 2xi8_A Putative transcription 89.7 0.5 1.7E-05 30.4 4.5 32 184-215 8-39 (66)
241 2zkz_A Transcriptional repress 89.7 0.31 1.1E-05 35.1 3.8 40 37-76 28-68 (99)
242 1neq_A DNA-binding protein NER 89.6 0.37 1.3E-05 33.3 4.0 38 172-212 7-44 (74)
243 3f6v_A Possible transcriptiona 89.6 0.22 7.6E-06 39.2 3.1 42 176-217 57-99 (151)
244 1i1g_A Transcriptional regulat 89.5 0.44 1.5E-05 36.0 4.8 33 41-73 9-42 (141)
245 1sfx_A Conserved hypothetical 89.5 0.69 2.4E-05 32.6 5.6 34 179-212 22-56 (109)
246 1h89_C C-MYB, MYB proto-oncoge 89.5 6.3 0.00022 30.7 12.8 144 29-212 5-152 (159)
247 1on2_A Transcriptional regulat 89.4 0.45 1.5E-05 36.0 4.7 43 35-77 6-50 (142)
248 2qlz_A Transcription factor PF 89.4 0.17 6E-06 42.8 2.6 39 181-219 169-208 (232)
249 2a6c_A Helix-turn-helix motif; 89.4 0.71 2.4E-05 31.8 5.4 37 179-215 20-56 (83)
250 2a6c_A Helix-turn-helix motif; 89.3 0.4 1.4E-05 33.2 4.0 32 40-71 21-53 (83)
251 2dbb_A Putative HTH-type trans 89.3 0.76 2.6E-05 35.3 6.0 34 40-73 13-47 (151)
252 2r1j_L Repressor protein C2; p 89.3 0.33 1.1E-05 31.5 3.4 25 47-71 16-40 (68)
253 3o9x_A Uncharacterized HTH-typ 89.3 0.42 1.4E-05 36.0 4.4 25 47-71 82-106 (133)
254 1j5y_A Transcriptional regulat 89.2 0.46 1.6E-05 38.3 4.9 41 177-217 21-64 (187)
255 4g6q_A Putative uncharacterize 89.2 0.22 7.4E-06 40.4 2.9 36 177-212 23-59 (182)
256 1or7_A Sigma-24, RNA polymeras 89.2 0.58 2E-05 36.7 5.4 31 42-72 149-179 (194)
257 1q1h_A TFE, transcription fact 89.0 0.35 1.2E-05 35.2 3.7 35 178-212 19-55 (110)
258 1y7y_A C.AHDI; helix-turn-heli 89.0 0.49 1.7E-05 31.2 4.2 32 40-71 16-48 (74)
259 3iwf_A Transcription regulator 88.9 0.26 8.8E-06 36.7 2.9 30 48-77 34-63 (107)
260 2w25_A Probable transcriptiona 88.9 0.5 1.7E-05 36.3 4.8 34 40-73 11-45 (150)
261 2p5v_A Transcriptional regulat 88.9 0.86 2.9E-05 35.5 6.1 40 33-73 8-48 (162)
262 3ppb_A Putative TETR family tr 88.8 0.47 1.6E-05 36.3 4.5 42 30-71 6-51 (195)
263 1j5y_A Transcriptional regulat 88.8 0.57 1.9E-05 37.7 5.1 37 37-73 22-60 (187)
264 2jvl_A TRMBF1; coactivator, he 88.7 1.8 6.2E-05 31.5 7.5 35 37-71 34-71 (107)
265 2b5a_A C.BCLI; helix-turn-heli 88.6 0.53 1.8E-05 31.4 4.2 32 40-71 13-45 (77)
266 2cfx_A HTH-type transcriptiona 88.6 0.9 3.1E-05 34.7 5.9 34 40-73 9-43 (144)
267 2cyy_A Putative HTH-type trans 88.5 1 3.4E-05 34.7 6.3 34 40-73 11-45 (151)
268 3t76_A VANU, transcriptional r 88.5 0.48 1.6E-05 33.9 4.0 26 46-71 34-59 (88)
269 1adr_A P22 C2 repressor; trans 88.4 0.4 1.4E-05 31.9 3.4 25 47-71 16-40 (76)
270 1uly_A Hypothetical protein PH 88.4 0.6 2.1E-05 38.1 5.1 36 177-212 20-55 (192)
271 2qko_A Possible transcriptiona 88.4 0.38 1.3E-05 38.1 3.8 41 31-71 26-70 (215)
272 2fu4_A Ferric uptake regulatio 88.3 0.69 2.4E-05 31.8 4.7 37 37-73 18-62 (83)
273 2pn6_A ST1022, 150AA long hypo 88.3 0.63 2.1E-05 35.7 4.9 35 40-74 7-42 (150)
274 1ub9_A Hypothetical protein PH 88.2 0.38 1.3E-05 33.8 3.3 35 39-73 19-54 (100)
275 2pn6_A ST1022, 150AA long hypo 88.2 0.66 2.3E-05 35.5 5.0 35 178-212 4-39 (150)
276 2x4h_A Hypothetical protein SS 88.2 0.76 2.6E-05 34.5 5.3 42 36-77 16-59 (139)
277 2cw1_A SN4M; lambda CRO fold, 88.2 0.9 3.1E-05 30.8 5.1 30 184-214 8-37 (65)
278 2k02_A Ferrous iron transport 88.1 0.49 1.7E-05 34.2 3.8 30 47-76 14-43 (87)
279 3tqn_A Transcriptional regulat 88.1 0.64 2.2E-05 34.4 4.6 42 36-77 12-61 (113)
280 2opt_A Actii protein; helical 88.0 0.65 2.2E-05 38.5 5.2 42 30-71 3-48 (234)
281 3bs3_A Putative DNA-binding pr 88.0 0.75 2.5E-05 30.5 4.6 33 183-215 16-48 (76)
282 2e1c_A Putative HTH-type trans 88.0 0.94 3.2E-05 36.1 5.9 42 32-74 24-66 (171)
283 2kpj_A SOS-response transcript 87.9 0.38 1.3E-05 34.0 3.2 34 38-71 10-44 (94)
284 1uly_A Hypothetical protein PH 87.9 0.5 1.7E-05 38.6 4.3 35 39-73 23-57 (192)
285 2r1j_L Repressor protein C2; p 87.9 0.66 2.3E-05 30.0 4.2 32 183-214 11-42 (68)
286 2cg4_A Regulatory protein ASNC 87.8 1 3.4E-05 34.7 5.8 34 40-73 12-46 (152)
287 3dcf_A Transcriptional regulat 87.8 0.67 2.3E-05 36.2 4.9 40 32-71 30-73 (218)
288 3b73_A PHIH1 repressor-like pr 87.7 0.82 2.8E-05 34.3 5.1 40 173-212 9-51 (111)
289 2ict_A Antitoxin HIGA; helix-t 87.7 0.39 1.3E-05 33.8 3.1 25 47-71 19-43 (94)
290 3omt_A Uncharacterized protein 87.7 0.58 2E-05 31.2 3.9 31 184-214 15-45 (73)
291 3neu_A LIN1836 protein; struct 87.6 0.72 2.5E-05 34.8 4.8 42 36-77 16-65 (125)
292 2k9q_A Uncharacterized protein 87.5 0.36 1.2E-05 32.7 2.7 25 47-71 13-37 (77)
293 3qkx_A Uncharacterized HTH-typ 87.5 0.73 2.5E-05 35.0 4.9 36 36-71 11-50 (188)
294 3nxc_A HTH-type protein SLMA; 87.5 0.5 1.7E-05 36.9 4.0 41 31-71 22-67 (212)
295 3qq6_A HTH-type transcriptiona 87.5 0.4 1.4E-05 32.9 3.0 25 47-71 21-45 (78)
296 3bd1_A CRO protein; transcript 87.4 0.29 9.9E-06 33.5 2.2 23 49-72 12-34 (79)
297 2b5a_A C.BCLI; helix-turn-heli 87.4 1.3 4.4E-05 29.4 5.6 34 182-215 15-48 (77)
298 1ku9_A Hypothetical protein MJ 87.4 0.4 1.4E-05 35.8 3.2 35 39-74 32-66 (152)
299 3t72_q RNA polymerase sigma fa 87.3 0.77 2.6E-05 33.7 4.6 25 48-72 38-62 (99)
300 1y7y_A C.AHDI; helix-turn-heli 87.3 1.4 4.6E-05 29.0 5.6 33 182-214 18-50 (74)
301 2ef8_A C.ECOT38IS, putative tr 87.3 0.52 1.8E-05 32.0 3.5 33 39-71 12-45 (84)
302 2w25_A Probable transcriptiona 87.1 1 3.5E-05 34.6 5.5 34 179-212 9-43 (150)
303 2l1p_A DNA-binding protein SAT 87.0 1.2 4E-05 32.0 5.2 41 116-157 14-54 (83)
304 1r8e_A Multidrug-efflux transp 87.0 1 3.5E-05 37.9 5.9 27 49-76 5-31 (278)
305 2e1c_A Putative HTH-type trans 86.9 1 3.4E-05 35.9 5.5 40 178-217 28-69 (171)
306 2yve_A Transcriptional regulat 86.9 0.79 2.7E-05 35.6 4.8 38 34-71 5-46 (185)
307 3s8q_A R-M controller protein; 86.9 0.56 1.9E-05 31.9 3.5 33 39-71 13-46 (82)
308 2lfw_A PHYR sigma-like domain; 86.9 0.26 8.8E-06 38.3 1.9 37 175-212 95-131 (157)
309 3i4p_A Transcriptional regulat 86.8 0.88 3E-05 35.7 5.1 39 179-217 5-45 (162)
310 2g7g_A RHA04620, putative tran 86.8 0.68 2.3E-05 37.4 4.5 42 30-71 8-51 (213)
311 2xvc_A ESCRT-III, SSO0910; cel 86.8 1.1 3.7E-05 30.0 4.6 37 181-217 14-53 (59)
312 2ewt_A BLDD, putative DNA-bind 86.8 0.73 2.5E-05 30.2 3.9 32 40-71 11-45 (71)
313 3f6w_A XRE-family like protein 86.8 0.41 1.4E-05 32.7 2.7 32 40-71 17-49 (83)
314 2p5v_A Transcriptional regulat 86.8 1.1 3.7E-05 35.0 5.5 35 178-212 11-46 (162)
315 2hxi_A Putative transcriptiona 86.8 0.79 2.7E-05 38.0 5.0 43 29-71 25-71 (241)
316 2ek5_A Predicted transcription 86.8 1.1 3.9E-05 34.1 5.5 43 36-78 7-57 (129)
317 2wiu_B HTH-type transcriptiona 86.7 1.5 5.1E-05 29.9 5.7 38 176-213 10-48 (88)
318 3kxa_A NGO0477 protein, putati 86.7 1.5 5.2E-05 33.7 6.3 26 46-71 78-103 (141)
319 1rp3_A RNA polymerase sigma fa 86.7 0.98 3.3E-05 36.4 5.4 40 32-72 187-226 (239)
320 3r0a_A Putative transcriptiona 86.6 1.2 4E-05 33.5 5.4 34 179-212 28-64 (123)
321 3eus_A DNA-binding protein; st 86.6 1.2 4E-05 31.0 5.1 34 38-71 15-49 (86)
322 4hku_A LMO2814 protein, TETR t 86.6 0.54 1.9E-05 36.3 3.7 41 30-70 4-48 (178)
323 2lfw_A PHYR sigma-like domain; 86.6 0.35 1.2E-05 37.5 2.5 41 31-72 92-132 (157)
324 2l8n_A Transcriptional repress 86.6 0.57 2E-05 31.9 3.3 51 136-198 10-60 (67)
325 2pz9_A Putative regulatory pro 86.6 0.56 1.9E-05 37.6 3.8 45 27-71 24-72 (226)
326 2cyy_A Putative HTH-type trans 86.6 0.98 3.3E-05 34.8 5.1 34 179-212 9-43 (151)
327 2cg4_A Regulatory protein ASNC 86.6 0.98 3.4E-05 34.7 5.1 34 179-212 10-44 (152)
328 1sgm_A Putative HTH-type trans 86.4 0.73 2.5E-05 35.1 4.3 40 32-71 5-48 (191)
329 3dew_A Transcriptional regulat 86.4 0.69 2.4E-05 35.5 4.2 39 33-71 8-50 (206)
330 3t72_q RNA polymerase sigma fa 86.4 1.1 3.7E-05 32.9 5.0 24 189-212 38-61 (99)
331 2xpw_A Tetracycline repressor 86.4 0.61 2.1E-05 37.6 4.0 40 32-71 2-45 (207)
332 2cfx_A HTH-type transcriptiona 86.3 1.2 4.2E-05 34.0 5.5 34 179-212 7-41 (144)
333 1i1g_A Transcriptional regulat 86.3 0.77 2.6E-05 34.6 4.3 34 179-212 6-40 (141)
334 2p4w_A Transcriptional regulat 86.3 0.91 3.1E-05 37.4 5.0 36 177-212 15-50 (202)
335 2ev1_A Hypothetical protein RV 86.3 1.7 5.8E-05 36.7 6.7 48 31-78 50-107 (222)
336 1adr_A P22 C2 repressor; trans 86.3 0.88 3E-05 30.1 4.2 32 184-215 12-43 (76)
337 3fiw_A Putative TETR-family tr 86.2 0.53 1.8E-05 38.1 3.5 45 27-71 19-67 (211)
338 3kz3_A Repressor protein CI; f 86.2 1.1 3.7E-05 30.5 4.7 29 187-215 22-50 (80)
339 1or7_A Sigma-24, RNA polymeras 86.2 1 3.5E-05 35.3 5.1 32 181-212 147-178 (194)
340 3egq_A TETR family transcripti 86.0 0.9 3.1E-05 34.3 4.6 36 36-71 7-46 (170)
341 2f2e_A PA1607; transcription f 86.0 0.78 2.7E-05 35.5 4.2 36 41-76 29-64 (146)
342 3lfp_A CSP231I C protein; tran 85.9 0.92 3.1E-05 32.2 4.3 25 47-71 12-40 (98)
343 1zk8_A Transcriptional regulat 85.9 0.58 2E-05 35.8 3.5 42 30-71 5-50 (183)
344 2ppx_A AGR_C_3184P, uncharacte 85.8 0.81 2.8E-05 32.7 4.0 25 47-71 41-65 (99)
345 2dg7_A Putative transcriptiona 85.8 1.1 3.6E-05 34.7 5.0 41 32-72 6-50 (195)
346 1z7u_A Hypothetical protein EF 85.7 1 3.5E-05 33.0 4.6 33 41-73 27-60 (112)
347 1r8e_A Multidrug-efflux transp 85.7 1.3 4.3E-05 37.3 5.8 68 135-203 5-76 (278)
348 2qwt_A Transcriptional regulat 85.7 1 3.5E-05 35.2 4.9 33 39-71 20-54 (196)
349 3tqn_A Transcriptional regulat 85.7 1.2 4.2E-05 32.8 5.1 35 178-212 14-55 (113)
350 3iuo_A ATP-dependent DNA helic 85.4 4.7 0.00016 30.4 8.3 85 123-209 21-111 (122)
351 2pjp_A Selenocysteine-specific 85.4 0.75 2.6E-05 34.5 3.8 85 124-211 9-101 (121)
352 2hzt_A Putative HTH-type trans 85.4 0.79 2.7E-05 33.4 3.8 36 40-75 18-54 (107)
353 3kz9_A SMCR; transcriptional r 85.3 1.1 3.7E-05 34.5 4.8 33 39-71 24-59 (206)
354 3bqz_B HTH-type transcriptiona 85.2 0.9 3.1E-05 34.8 4.3 34 38-71 8-44 (194)
355 2q1z_A RPOE, ECF SIGE; ECF sig 85.2 0.29 9.9E-06 38.3 1.4 26 47-72 149-174 (184)
356 2l49_A C protein; P2 bacteriop 85.2 0.74 2.5E-05 32.4 3.5 25 47-71 15-39 (99)
357 3bd1_A CRO protein; transcript 85.2 1.2 4.1E-05 30.2 4.5 29 186-215 8-36 (79)
358 4ghj_A Probable transcriptiona 85.2 1.2 4.3E-05 32.5 4.8 42 30-71 25-71 (101)
359 2fq4_A Transcriptional regulat 85.0 1.1 3.9E-05 34.7 4.9 38 34-71 13-54 (192)
360 1b0n_A Protein (SINR protein); 85.0 1.6 5.6E-05 31.1 5.4 30 184-213 8-37 (111)
361 3gzi_A Transcriptional regulat 84.9 1.2 4.3E-05 34.7 5.1 33 39-71 24-59 (218)
362 1zx4_A P1 PARB, plasmid partit 84.9 2.1 7.1E-05 35.3 6.5 41 174-214 8-48 (192)
363 3by6_A Predicted transcription 84.9 1.2 4.1E-05 33.7 4.8 42 36-77 14-63 (126)
364 1rzs_A Antirepressor, regulato 84.8 0.44 1.5E-05 31.5 2.0 21 191-211 11-31 (61)
365 2nnn_A Probable transcriptiona 84.8 1.8 6.1E-05 31.8 5.7 44 32-75 35-78 (140)
366 2kpj_A SOS-response transcript 84.8 1.6 5.4E-05 30.7 5.1 31 184-214 16-46 (94)
367 1l3l_A Transcriptional activat 84.8 1.3 4.3E-05 36.6 5.3 38 173-212 173-210 (234)
368 1jhf_A LEXA repressor; LEXA SO 84.7 1.1 3.7E-05 36.1 4.7 42 32-73 3-50 (202)
369 3vp5_A Transcriptional regulat 84.7 1.2 4.1E-05 34.7 4.8 36 36-71 15-54 (189)
370 3k2z_A LEXA repressor; winged 84.6 0.83 2.9E-05 36.9 4.0 41 36-76 8-51 (196)
371 2rae_A Transcriptional regulat 84.6 1.4 4.8E-05 34.2 5.2 43 29-71 13-59 (207)
372 2h09_A Transcriptional regulat 84.6 1.5 5.2E-05 33.5 5.4 42 36-77 39-82 (155)
373 3f1b_A TETR-like transcription 84.6 0.98 3.4E-05 34.7 4.3 37 35-71 16-56 (203)
374 4ac0_A Tetracycline repressor 84.6 0.64 2.2E-05 37.6 3.3 41 31-71 1-45 (202)
375 1z0x_A Transcriptional regulat 84.6 0.9 3.1E-05 36.8 4.2 41 31-71 3-48 (220)
376 1vz0_A PARB, chromosome partit 84.5 5.8 0.0002 33.1 9.3 42 117-158 116-157 (230)
377 3lwj_A Putative TETR-family tr 84.5 0.96 3.3E-05 35.0 4.2 37 35-71 14-54 (202)
378 3bpv_A Transcriptional regulat 84.4 1.9 6.5E-05 31.6 5.7 42 33-74 27-68 (138)
379 1hqc_A RUVB; extended AAA-ATPa 84.4 0.55 1.9E-05 40.0 2.9 29 48-76 263-291 (324)
380 3lhq_A Acrab operon repressor 84.4 0.97 3.3E-05 35.1 4.2 36 36-71 17-56 (220)
381 3ljl_A Transcriptional regulat 84.3 1 3.5E-05 34.1 4.2 37 35-71 16-56 (156)
382 3f6v_A Possible transcriptiona 84.3 0.66 2.3E-05 36.4 3.1 39 36-74 58-96 (151)
383 2zcm_A Biofilm operon icaabcd 84.3 1.5 5E-05 33.8 5.2 38 34-71 8-49 (192)
384 2ef8_A C.ECOT38IS, putative tr 84.2 2.3 7.8E-05 28.6 5.6 32 184-215 17-48 (84)
385 1v4r_A Transcriptional repress 84.1 1 3.5E-05 32.4 3.9 27 51-77 37-63 (102)
386 2dbb_A Putative HTH-type trans 84.1 1.5 5.1E-05 33.6 5.1 34 179-212 11-45 (151)
387 3neu_A LIN1836 protein; struct 84.0 1.6 5.5E-05 32.8 5.1 35 178-212 18-59 (125)
388 4aci_A HTH-type transcriptiona 83.8 0.87 3E-05 34.9 3.6 40 32-71 13-56 (191)
389 2qtq_A Transcriptional regulat 83.8 1.7 5.7E-05 33.7 5.3 42 30-71 13-58 (213)
390 3vpr_A Transcriptional regulat 83.7 1.4 4.8E-05 33.9 4.9 37 35-71 5-45 (190)
391 3qq6_A HTH-type transcriptiona 83.7 1.9 6.4E-05 29.3 5.0 32 182-213 15-46 (78)
392 3on4_A Transcriptional regulat 83.6 1.4 4.9E-05 33.4 4.8 40 32-71 9-52 (191)
393 2ewt_A BLDD, putative DNA-bind 83.6 2.9 9.9E-05 27.2 5.7 32 184-215 15-48 (71)
394 1y6u_A XIS, excisionase from t 83.6 0.59 2E-05 32.3 2.2 25 49-73 16-40 (70)
395 3o60_A LIN0861 protein; PSI, M 83.5 1.2 4.1E-05 35.1 4.4 39 33-71 19-62 (185)
396 2hxo_A Putative TETR-family tr 83.4 0.96 3.3E-05 37.3 3.9 44 28-71 11-58 (237)
397 3t76_A VANU, transcriptional r 83.4 1.7 5.7E-05 30.9 4.7 34 181-214 28-61 (88)
398 2g7s_A Transcriptional regulat 83.4 1.2 4E-05 33.9 4.2 37 35-71 10-50 (194)
399 3nrv_A Putative transcriptiona 83.4 2.1 7.2E-05 31.9 5.6 43 32-74 37-79 (148)
400 2a61_A Transcriptional regulat 83.3 2.2 7.4E-05 31.6 5.6 29 46-74 44-72 (145)
401 2dg8_A Putative TETR-family tr 83.3 1.1 3.8E-05 34.7 4.1 38 34-71 10-51 (193)
402 2d6y_A Putative TETR family re 83.3 1.2 4.1E-05 35.0 4.3 39 33-71 8-50 (202)
403 3bjb_A Probable transcriptiona 83.3 1.5 5E-05 34.7 4.9 33 39-71 29-64 (207)
404 2np5_A Transcriptional regulat 83.3 0.97 3.3E-05 35.5 3.8 41 31-71 7-51 (203)
405 2hku_A A putative transcriptio 83.3 1.2 4.1E-05 35.1 4.3 40 32-71 19-61 (215)
406 2jj7_A Hemolysin II regulatory 83.2 0.93 3.2E-05 34.7 3.6 36 36-71 10-49 (186)
407 3g5g_A Regulatory protein; tra 83.2 1.8 6E-05 31.2 4.9 33 39-71 30-63 (99)
408 2k9q_A Uncharacterized protein 83.2 1.3 4.6E-05 29.7 4.0 29 185-213 10-38 (77)
409 2o03_A Probable zinc uptake re 83.2 1.8 6.2E-05 32.7 5.1 35 178-212 12-53 (131)
410 1pb6_A Hypothetical transcript 83.1 1.2 4.2E-05 34.5 4.3 38 34-71 19-60 (212)
411 4ham_A LMO2241 protein; struct 83.1 1.6 5.3E-05 33.2 4.7 42 36-77 17-66 (134)
412 1u8b_A ADA polyprotein; protei 83.1 1.4 4.7E-05 33.1 4.4 36 38-73 81-117 (133)
413 2eh3_A Transcriptional regulat 83.1 1.6 5.4E-05 33.4 4.9 33 39-71 9-44 (179)
414 2wte_A CSA3; antiviral protein 83.1 1.8 6.3E-05 36.6 5.6 45 32-77 149-194 (244)
415 2guh_A Putative TETR-family tr 83.1 1.5 5.3E-05 35.0 5.0 38 34-71 40-81 (214)
416 3pas_A TETR family transcripti 83.1 0.89 3.1E-05 34.7 3.4 33 39-71 15-50 (195)
417 2g7l_A TETR-family transcripti 83.1 0.94 3.2E-05 37.6 3.8 43 29-71 15-61 (243)
418 3onq_A Regulator of polyketide 83.0 1.4 4.8E-05 37.6 4.9 38 36-73 196-233 (262)
419 3bdd_A Regulatory protein MARR 83.0 2.2 7.4E-05 31.4 5.5 28 46-73 42-69 (142)
420 2dg7_A Putative transcriptiona 83.0 1.7 5.7E-05 33.6 5.0 23 190-212 27-49 (195)
421 2w48_A Sorbitol operon regulat 83.0 1.9 6.3E-05 37.5 5.8 37 176-212 7-43 (315)
422 3vib_A MTRR; helix-turn-helix 83.0 1.9 6.5E-05 33.7 5.4 37 176-212 9-52 (210)
423 3col_A Putative transcription 82.9 0.92 3.2E-05 34.6 3.4 41 31-71 8-52 (196)
424 2ia0_A Putative HTH-type trans 82.9 2 6.8E-05 34.1 5.5 33 180-212 20-53 (171)
425 3bja_A Transcriptional regulat 82.9 1.7 5.9E-05 31.8 4.9 41 33-73 31-71 (139)
426 3b73_A PHIH1 repressor-like pr 82.9 1.3 4.5E-05 33.1 4.2 38 39-76 16-56 (111)
427 3clo_A Transcriptional regulat 82.9 1.5 5.2E-05 36.8 5.0 40 31-72 196-235 (258)
428 2vpr_A Tetracycline resistance 82.9 0.61 2.1E-05 37.7 2.5 40 32-71 3-46 (207)
429 3f0c_A TETR-molecule A, transc 82.8 1.2 4.2E-05 34.7 4.2 40 32-71 10-53 (216)
430 2o7t_A Transcriptional regulat 82.8 1.6 5.5E-05 33.9 4.9 33 39-71 15-50 (199)
431 3ech_A MEXR, multidrug resista 82.8 2.3 7.9E-05 31.6 5.6 45 32-76 34-78 (142)
432 1sfu_A 34L protein; protein/Z- 82.8 1.2 4.1E-05 31.3 3.6 31 181-211 19-50 (75)
433 3u1d_A Uncharacterized protein 82.7 1.8 6.3E-05 34.3 5.1 38 175-212 27-68 (151)
434 2iu5_A DHAS, YCEG, HTH-type dh 82.7 1 3.5E-05 35.0 3.6 38 33-70 13-54 (195)
435 3f6w_A XRE-family like protein 82.7 2.1 7E-05 29.0 4.8 32 184-215 21-52 (83)
436 3mvp_A TETR/ACRR transcription 82.7 1.2 4.2E-05 34.6 4.1 37 35-71 28-68 (217)
437 3bdn_A Lambda repressor; repre 82.6 0.97 3.3E-05 37.0 3.6 43 29-71 3-52 (236)
438 1mkm_A ICLR transcriptional re 82.6 2.1 7.2E-05 35.8 5.8 42 176-217 7-51 (249)
439 1mkm_A ICLR transcriptional re 82.6 1.8 6.3E-05 36.1 5.4 39 35-73 7-47 (249)
440 3rd3_A Probable transcriptiona 82.5 0.9 3.1E-05 34.8 3.2 41 31-71 8-52 (197)
441 2ijl_A AGR_C_4647P, molybdenum 82.5 1.4 4.9E-05 34.1 4.3 39 33-73 24-62 (135)
442 2hzt_A Putative HTH-type trans 82.5 1.7 5.8E-05 31.5 4.6 34 179-212 16-50 (107)
443 3bqy_A Putative TETR family tr 82.5 1.3 4.4E-05 35.7 4.3 38 34-71 3-44 (209)
444 3mnl_A KSTR, transcriptional r 82.4 0.99 3.4E-05 34.8 3.5 37 35-71 22-62 (203)
445 3cec_A Putative antidote prote 82.4 0.75 2.6E-05 33.0 2.5 25 47-71 29-53 (104)
446 3dpj_A Transcription regulator 82.4 1.3 4.5E-05 34.0 4.2 33 39-71 15-50 (194)
447 3bni_A Putative TETR-family tr 82.4 1.3 4.3E-05 35.6 4.2 37 35-71 45-85 (229)
448 3mlf_A Transcriptional regulat 82.4 1.2 4.2E-05 32.7 3.8 25 47-71 34-58 (111)
449 2ek5_A Predicted transcription 82.3 2.3 7.7E-05 32.3 5.4 33 180-212 11-50 (129)
450 2fa5_A Transcriptional regulat 82.3 2.7 9.3E-05 31.8 5.9 43 32-74 46-88 (162)
451 1t33_A Putative transcriptiona 82.3 1.2 4E-05 35.1 3.9 37 35-71 14-53 (224)
452 3s8q_A R-M controller protein; 82.3 3 0.0001 28.1 5.6 33 182-214 16-48 (82)
453 1mzb_A Ferric uptake regulatio 82.3 1.8 6.2E-05 32.9 4.9 35 178-212 19-61 (136)
454 1rp3_A RNA polymerase sigma fa 82.3 1.8 6.1E-05 34.8 5.1 37 175-212 189-225 (239)
455 2fjr_A Repressor protein CI; g 82.2 2.1 7.2E-05 33.7 5.4 36 35-71 7-42 (189)
456 2q24_A Putative TETR family tr 82.1 1.4 4.9E-05 34.0 4.3 39 33-71 15-56 (194)
457 3bru_A Regulatory protein, TET 82.1 1.7 5.9E-05 34.0 4.8 38 34-71 31-72 (222)
458 2gen_A Probable transcriptiona 82.1 1.9 6.4E-05 33.6 5.0 40 32-71 6-49 (197)
459 1u8b_A ADA polyprotein; protei 82.1 2.1 7.3E-05 32.0 5.2 39 124-162 81-121 (133)
460 2eby_A Putative HTH-type trans 82.1 0.76 2.6E-05 33.4 2.5 26 46-71 21-46 (113)
461 1x57_A Endothelial differentia 82.1 3.6 0.00012 28.4 6.0 38 177-214 13-50 (91)
462 2fq4_A Transcriptional regulat 82.1 2.4 8.2E-05 32.8 5.6 37 176-212 11-54 (192)
463 2q0o_A Probable transcriptiona 82.0 1.7 5.7E-05 35.9 4.9 38 173-212 175-212 (236)
464 1z7u_A Hypothetical protein EF 82.0 1.8 6.2E-05 31.6 4.6 34 179-212 24-58 (112)
465 2rdp_A Putative transcriptiona 82.0 2.4 8.4E-05 31.6 5.5 43 32-74 39-81 (150)
466 2ict_A Antitoxin HIGA; helix-t 82.0 1.8 6.2E-05 30.2 4.4 31 184-214 15-45 (94)
467 3anp_C Transcriptional repress 82.0 1.3 4.6E-05 34.5 4.1 33 39-71 16-51 (204)
468 2q0o_A Probable transcriptiona 81.8 2.8 9.5E-05 34.5 6.2 40 118-159 175-214 (236)
469 3vk0_A NHTF, transcriptional r 81.8 1.2 4E-05 32.7 3.5 34 38-71 22-56 (114)
470 3kkc_A TETR family transcripti 81.7 0.9 3.1E-05 34.4 2.9 38 34-71 13-54 (177)
471 2fe3_A Peroxide operon regulat 81.7 2.4 8.3E-05 32.6 5.4 35 178-212 23-64 (145)
472 3nnr_A Transcriptional regulat 81.6 1.3 4.4E-05 35.2 4.0 38 34-71 6-47 (228)
473 3frq_A Repressor protein MPHR( 81.6 1.5 5E-05 33.9 4.2 41 30-70 5-49 (195)
474 3by6_A Predicted transcription 81.5 2.3 7.8E-05 32.1 5.1 33 180-212 18-57 (126)
475 3fmy_A HTH-type transcriptiona 81.5 1.9 6.5E-05 29.0 4.2 30 186-215 20-49 (73)
476 3knw_A Putative transcriptiona 81.5 1.5 5E-05 34.0 4.2 38 34-71 15-56 (212)
477 2xdn_A HTH-type transcriptiona 81.5 1.9 6.6E-05 33.7 4.9 33 39-71 18-53 (210)
478 2fbi_A Probable transcriptiona 81.4 2.2 7.4E-05 31.4 5.0 42 33-74 34-75 (142)
479 3trb_A Virulence-associated pr 81.4 2.1 7.1E-05 31.3 4.7 31 185-215 22-52 (104)
480 3hrs_A Metalloregulator SCAR; 81.4 13 0.00045 30.2 10.2 64 34-97 3-70 (214)
481 3qkx_A Uncharacterized HTH-typ 81.4 2.2 7.4E-05 32.3 5.1 32 124-155 14-48 (188)
482 2id3_A Putative transcriptiona 81.4 1.5 5.2E-05 35.0 4.4 38 34-71 41-82 (225)
483 3rqi_A Response regulator prot 81.4 1.2 4.1E-05 34.7 3.6 32 44-75 151-182 (184)
484 2gxg_A 146AA long hypothetical 81.4 2.4 8.1E-05 31.4 5.2 28 47-74 48-75 (146)
485 3m8j_A FOCB protein; all-alpha 81.3 4.8 0.00016 30.3 6.7 42 117-158 42-83 (111)
486 1lmb_3 Protein (lambda repress 81.3 2.2 7.7E-05 29.4 4.7 28 187-214 27-54 (92)
487 2ibd_A Possible transcriptiona 81.2 2 7E-05 33.4 5.0 38 34-71 15-56 (204)
488 3tgn_A ADC operon repressor AD 81.1 1.9 6.5E-05 32.1 4.6 43 32-75 35-77 (146)
489 1j1v_A Chromosomal replication 81.1 4.5 0.00015 29.2 6.4 60 139-212 8-69 (94)
490 3cwr_A Transcriptional regulat 81.1 1.6 5.3E-05 33.6 4.2 38 34-71 18-59 (208)
491 3g3z_A NMB1585, transcriptiona 81.1 2.9 9.8E-05 31.1 5.6 42 33-74 29-70 (145)
492 3sqn_A Conserved domain protei 81.1 1.8 6.1E-05 40.2 5.2 106 39-164 21-144 (485)
493 2zb9_A Putative transcriptiona 81.1 1.5 5.3E-05 34.3 4.2 33 39-71 30-65 (214)
494 3rh2_A Hypothetical TETR-like 81.1 1.5 5.3E-05 34.3 4.2 36 36-71 6-45 (212)
495 3b81_A Transcriptional regulat 81.1 1.2 4.1E-05 34.3 3.5 33 39-71 18-53 (203)
496 2f07_A YVDT; helix-turn-helix, 81.0 2.1 7.2E-05 33.3 4.9 39 33-71 10-52 (197)
497 2pg4_A Uncharacterized protein 81.0 1.6 5.5E-05 30.7 3.9 35 40-74 19-56 (95)
498 3s5r_A Transcriptional regulat 80.9 1.5 5E-05 34.2 4.0 39 33-71 10-52 (216)
499 3k0l_A Repressor protein; heli 80.8 3.5 0.00012 31.4 6.1 43 32-74 43-85 (162)
500 1jgs_A Multiple antibiotic res 80.8 2.9 0.0001 30.7 5.5 42 33-74 32-73 (138)
No 1
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=99.38 E-value=9.1e-12 Score=96.83 Aligned_cols=99 Identities=8% Similarity=-0.069 Sum_probs=81.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy17316 113 YGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEGIRSGQTT 192 (229)
Q Consensus 113 ~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~~~~~~~s 192 (229)
+|+++.|+.+++..++.++.+|. |..+||+.+||+.+|+++|++.+.........++++++++++...+++.+.++..+
T Consensus 1 Mgr~~~~s~~~r~~i~~~~~~G~-s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 1 MPRGSALSDTERAQLDVMKLLNV-SLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp -CCSCCCCHHHHHHHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred CCCcccCCHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 36778899999999999997775 99999999999999999999865211111113556788999998898887778899
Q ss_pred HHHHHHHhC--CChHHHHHHHH
Q psy17316 193 VQRASAEYG--IPSGTLYGRCK 212 (229)
Q Consensus 193 ~~eAA~~fg--Vp~~tv~~~vk 212 (229)
+.+++..|| ||++|||+|++
T Consensus 80 ~~~i~~~lg~~~s~~tV~r~l~ 101 (141)
T 1u78_A 80 ARDIRNELQLSASKRTILNVIK 101 (141)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHH
Confidence 999999999 89999999998
No 2
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=99.37 E-value=6.5e-12 Score=100.82 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=90.2
Q ss_pred hhcchhhhhhhhccCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHh---CCcccCCCCCC-CCCCC
Q psy17316 100 RAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKE---GIRLAQPFNAS-PTAWK 175 (229)
Q Consensus 100 ~~G~ls~~~~~~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~---g~k~~~~~~~~-~r~~t 175 (229)
.+|..-.++.+...|..++|+.+++.+++.++.+|. |+.+||+.|||+.+||++|++++ |.....+..++ +++++
T Consensus 7 ~~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~-s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~ 85 (159)
T 2k27_A 7 RSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGV-RPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVAT 85 (159)
T ss_dssp CCSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTC-CHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCC
T ss_pred hhcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCC
Confidence 456666677777777788999999999999998775 99999999999999999999865 32111122222 56788
Q ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHh----------CCChHHHHHHHHhh
Q psy17316 176 PEDLEIALEGIRS-GQTTVQRASAEY----------GIPSGTLYGRCKLS 214 (229)
Q Consensus 176 ~e~r~eaV~~~~~-~~~s~~eAA~~f----------gVp~~tv~~~vk~~ 214 (229)
+++...|++++.+ ..+++.+++..+ .||++|||+|++..
T Consensus 86 ~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~ 135 (159)
T 2k27_A 86 PKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 135 (159)
T ss_dssp TTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHH
Confidence 8888889888875 469999999887 59999999999833
No 3
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=99.31 E-value=3e-11 Score=93.85 Aligned_cols=126 Identities=9% Similarity=-0.014 Sum_probs=79.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhh
Q psy17316 30 TKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSISANKA 109 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~ 109 (229)
...||.+++..++..+.+ |+|..+||+.+||+++||++|++++...+....
T Consensus 4 ~~~~s~~~r~~i~~~~~~-G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~---------------------------- 54 (141)
T 1u78_A 4 GSALSDTERAQLDVMKLL-NVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKR---------------------------- 54 (141)
T ss_dssp SCCCCHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCC----------------------------
T ss_pred cccCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHcccccCCcCC----------------------------
Confidence 368999999999988755 689999999999999999999998754432211
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhC--CChHHHHHHHHHhCC-cccCCCCCCCCCCCHHHHHHHHHHH
Q psy17316 110 SKAYGPTKSWNEEILNVALDALRAGSISANKASKAYG--IPSSTLYKIARKEGI-RLAQPFNASPTAWKPEDLEIALEGI 186 (229)
Q Consensus 110 ~~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~g--Ip~sTL~~~ik~~g~-k~~~~~~~~~r~~t~e~r~eaV~~~ 186 (229)
.|++.+++++.....+....++..|..+|+..+| |+.+|+++|+++.|+ ....+. .....++..+..=+++|
T Consensus 55 ---~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~~g~~~~~k~~--~~~~l~~~~~~~R~~~~ 129 (141)
T 1u78_A 55 ---APRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSGVIVRQKLR--PAPLLSADHKLKRLEFA 129 (141)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHHTC---------------------------
T ss_pred ---CCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHHCCCceeeecC--CCCCCCHHHHHHHHHHH
Confidence 2345667777766666665667789999999999 788999999998887 443321 12233445555556666
Q ss_pred HhC
Q psy17316 187 RSG 189 (229)
Q Consensus 187 ~~~ 189 (229)
..+
T Consensus 130 ~~~ 132 (141)
T 1u78_A 130 KNN 132 (141)
T ss_dssp ---
T ss_pred HHH
Confidence 553
No 4
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=99.29 E-value=7.2e-11 Score=93.43 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=78.9
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHh---CCcccCCCCCC-CCCCCHHHHHHHHHHHHhC-C
Q psy17316 116 TKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKE---GIRLAQPFNAS-PTAWKPEDLEIALEGIRSG-Q 190 (229)
Q Consensus 116 ~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~---g~k~~~~~~~~-~r~~t~e~r~eaV~~~~~~-~ 190 (229)
.+.|+.+++.++|.++.+| .|+.+||+.+||+.+|+++|++++ |.....+..++ ++.+++++...|++++.++ .
T Consensus 30 ~~~~s~e~r~~iv~~~~~G-~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~ 108 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAHQG-VRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPT 108 (149)
T ss_dssp TSCCCHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcc
Confidence 4689999999999999876 599999999999999999999865 43222222232 5678898899999988764 6
Q ss_pred CcHHHHHHHh--------C--CChHHHHHHHHh
Q psy17316 191 TTVQRASAEY--------G--IPSGTLYGRCKL 213 (229)
Q Consensus 191 ~s~~eAA~~f--------g--Vp~~tv~~~vk~ 213 (229)
.++.+++..+ | ||++||++|++.
T Consensus 109 ~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 109 MFAWEIRDRLLAERVCDNDTVPSVSSINRIIRT 141 (149)
T ss_dssp CCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHC
T ss_pred hhHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Confidence 8999999988 6 899999999983
No 5
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=99.22 E-value=9.3e-11 Score=88.98 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHh---CCcccCCCCC-CCCCCCHHHHHHHHHHHHh-CC
Q psy17316 116 TKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKE---GIRLAQPFNA-SPTAWKPEDLEIALEGIRS-GQ 190 (229)
Q Consensus 116 ~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~---g~k~~~~~~~-~~r~~t~e~r~eaV~~~~~-~~ 190 (229)
.++|+.+++.+++.++.+|. |+.+||+.|||+.+|+++|++.+ |.....+..+ .++.++++++..|++++.+ ..
T Consensus 15 ~~~~s~~~r~~i~~~~~~g~-s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~~ 93 (128)
T 1pdn_C 15 GRPLPNNIRLKIVEMAADGI-RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPG 93 (128)
T ss_dssp TSCCCHHHHHHHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTT
T ss_pred CCcCCHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCcc
Confidence 45899999999999998764 99999999999999999999865 5322222222 4567788888888888765 46
Q ss_pred CcHHHHHHHh---C-------CChHHHHHHHH
Q psy17316 191 TTVQRASAEY---G-------IPSGTLYGRCK 212 (229)
Q Consensus 191 ~s~~eAA~~f---g-------Vp~~tv~~~vk 212 (229)
+++.+++..+ | +|++|||+|++
T Consensus 94 ~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 94 MFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred hHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 8999999999 7 59999999986
No 6
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=99.17 E-value=3e-10 Score=89.87 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=79.3
Q ss_pred CCCCCCCcccccCCCC-CCCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHH
Q psy17316 13 SSNYSDGETDKAGSLT-VTKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEI 91 (229)
Q Consensus 13 ~~~~~~~~~~~~~~~~-~~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~ 91 (229)
+|---++.....|... ..+.||.+++..++..+.+ |+|+.+||+.+||+++||++|+++|...|.....+
T Consensus 12 ~~~~~~~~~~~~gg~~~~~~~~s~e~r~~iv~~~~~-G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~-------- 82 (149)
T 1k78_A 12 TSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQ-GVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGV-------- 82 (149)
T ss_dssp -------CBCTTSCBCCTTSCCCHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCC--------
T ss_pred cccCCCCCccCCCceecCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccC--------
Confidence 3333334444444432 3578999999999999865 68999999999999999999999873222111100
Q ss_pred HHHHHHHHhhcchhhhhhhhccCC-CCCCCHHHHHHHHHHHHc-CCCCHHHHHHHh--------C--CChHHHHHHHHHh
Q psy17316 92 LNVALDALRAGSISANKASKAYGP-TKSWNEEILNVALDALRA-GSISANKASKAY--------G--IPSSTLYKIARKE 159 (229)
Q Consensus 92 ~~~a~~ll~~G~ls~~~~~~~~G~-~~kYs~e~k~~AV~~~~~-g~~S~~~~a~k~--------g--Ip~sTL~~~ik~~ 159 (229)
..|+ +.++++++...+++.+.+ ...|..+++..+ | ++.+||++|+++.
T Consensus 83 --------------------r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 83 --------------------IGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp --------------------CCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred --------------------CCCCCCCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 0122 456676666666666654 357999999887 7 7889999999864
No 7
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=99.16 E-value=1.3e-10 Score=81.77 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 27 LTVTKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 27 ~~~~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
|..+++|++|++++||++|.+|.||+.+||+.||||++||.++++.....
T Consensus 8 ~~ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~~~~~ 57 (70)
T 2cob_A 8 RGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGT 57 (70)
T ss_dssp SSCSCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHHHTTT
T ss_pred cccccccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHhhccc
Confidence 66789999999999999999998999999999999999999999976443
No 8
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=99.11 E-value=2.2e-10 Score=86.84 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=71.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh---CCCCCCCCCCCCCCcHHHHHHHHHHHhhcchh
Q psy17316 29 VTKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL---GIHTPKKEGPTKSWNEEILNVALDALRAGSIS 105 (229)
Q Consensus 29 ~~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~---gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls 105 (229)
..++|+.+++..++..+.+ |+|+.+||+.+||+++||++|+++| |...+...
T Consensus 14 m~~~~s~~~r~~i~~~~~~-g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~------------------------ 68 (128)
T 1pdn_C 14 NGRPLPNNIRLKIVEMAAD-GIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI------------------------ 68 (128)
T ss_dssp TTSCCCHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCC------------------------
T ss_pred CCCcCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccC------------------------
Confidence 3568999999999998864 6899999999999999999999997 33222111
Q ss_pred hhhhhhccC-CCCCCCHHHHHHHHHHHHc-CCCCHHHHHHHh---CC-------ChHHHHHHHHHh
Q psy17316 106 ANKASKAYG-PTKSWNEEILNVALDALRA-GSISANKASKAY---GI-------PSSTLYKIARKE 159 (229)
Q Consensus 106 ~~~~~~~~G-~~~kYs~e~k~~AV~~~~~-g~~S~~~~a~k~---gI-------p~sTL~~~ik~~ 159 (229)
.| .+.+++++.....++.+.+ ...|..+++..+ |+ +.+|+++|+++.
T Consensus 69 -------~g~~~~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~~ 127 (128)
T 1pdn_C 69 -------GGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGR 127 (128)
T ss_dssp -------SCCCCCSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC---
T ss_pred -------CCCCCCcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHhc
Confidence 11 2445555555555555443 457999999988 75 778999998764
No 9
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=99.04 E-value=2.3e-09 Score=85.75 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhh
Q psy17316 30 TKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSISANKA 109 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~ 109 (229)
.++||.+++..++..+.+ |+|+.+||+.+||+++||++|+++|...+.....+
T Consensus 23 ~~~~s~e~r~~ii~l~~~-G~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~-------------------------- 75 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAHQ-GVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGV-------------------------- 75 (159)
T ss_dssp SCSSCHHHHHHHHHHHHH-TCCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCC--------------------------
T ss_pred CCCCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCC--------------------------
Confidence 468999999999998865 67999999999999999999999875443211110
Q ss_pred hhccCC-CCCCCHHHHHHHHHHHHc-CCCCHHHHHHHh----------CCChHHHHHHHHHh
Q psy17316 110 SKAYGP-TKSWNEEILNVALDALRA-GSISANKASKAY----------GIPSSTLYKIARKE 159 (229)
Q Consensus 110 ~~~~G~-~~kYs~e~k~~AV~~~~~-g~~S~~~~a~k~----------gIp~sTL~~~ik~~ 159 (229)
..|. +.++++++...+++.+.+ ...|..+++..+ .++.+|+++|++++
T Consensus 76 --r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~ 135 (159)
T 2k27_A 76 --IGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 135 (159)
T ss_dssp --CCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHH
T ss_pred --CCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHH
Confidence 0122 456676666666666654 457999998877 47889999999876
No 10
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=98.90 E-value=4.4e-09 Score=73.99 Aligned_cols=53 Identities=34% Similarity=0.474 Sum_probs=46.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHhCCcccC
Q psy17316 113 YGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKEGIRLAQ 165 (229)
Q Consensus 113 ~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~ 165 (229)
.|..+.|+++++++||++|.+|.+|+..+|.+||||++||+++++........
T Consensus 8 ~~ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~~~~~~~~ 60 (70)
T 2cob_A 8 RGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKN 60 (70)
T ss_dssp SSCSCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHHHTTTTSS
T ss_pred cccccccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHhhcccccC
Confidence 45678999999999999999998999999999999999999999976544444
No 11
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=98.70 E-value=2.4e-08 Score=73.65 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHcC-CCCHHHHHHHcCCChhhHHHHHHHhCCCCCCC
Q psy17316 29 VTKTWTHEDMDAALEALRAG-QMSLTKASVSYGIPSTTLWQRAHRLGIHTPKK 80 (229)
Q Consensus 29 ~~~kyt~e~~~~AI~~~~~g-~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~ 80 (229)
.+++||.+.+..+|+.+.++ +.|+.+||+.|||+++||++|+++|...+...
T Consensus 2 ~r~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~~~ 54 (97)
T 2jn6_A 2 PTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHNVQ 54 (97)
T ss_dssp CCCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCSTTC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhhcCccc
Confidence 35789999999999999877 89999999999999999999999997766543
No 12
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=98.61 E-value=4.3e-08 Score=66.31 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCC----HHHHHHHhCCChHHHHHHHHHh
Q psy17316 114 GPTKSWNEEILNVALDALRAGSIS----ANKASKAYGIPSSTLYKIARKE 159 (229)
Q Consensus 114 G~~~kYs~e~k~~AV~~~~~g~~S----~~~~a~k~gIp~sTL~~~ik~~ 159 (229)
|+.++||+|||++|++.+..| .| +.++|++|||+.+||++|++.+
T Consensus 1 g~r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 1 GSRRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCCCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 567899999999996555444 58 9999999999999999999754
No 13
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=98.52 E-value=9.7e-08 Score=64.52 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCCC----HHHHHHHcCCChhhHHHHHHHh
Q psy17316 30 TKTWTHEDMDAALEALRAGQMS----LTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~g~~S----~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
+++||.|.+++|+ ++.+++.| +.++|++|||+++||++|++++
T Consensus 3 r~~ys~efK~~~~-~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQVL-ESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHHH-HHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHHH-HHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 5789999999995 55566779 9999999999999999999865
No 14
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=98.51 E-value=2.9e-07 Score=66.94 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 28 TVTKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 28 ~~~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
..+++||.+.+..|++.+. ++.|+.+||++|||+++||++|++++.
T Consensus 18 ~~~~~ys~e~k~~~v~~~~-~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIH-DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHH-HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567999999999999885 468999999999999999999999864
No 15
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=98.49 E-value=2e-07 Score=68.62 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHcC-CCCHHHHHHHhCCChHHHHHHHHHhC
Q psy17316 117 KSWNEEILNVALDALRAG-SISANKASKAYGIPSSTLYKIARKEG 160 (229)
Q Consensus 117 ~kYs~e~k~~AV~~~~~g-~~S~~~~a~k~gIp~sTL~~~ik~~g 160 (229)
++||.+++.+||..|.++ +.|+.+||+.|||+.+|||+|++.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 579999999999999876 67999999999999999999999874
No 16
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=98.48 E-value=4.9e-07 Score=67.50 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=51.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCC
Q psy17316 27 LTVTKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGP 83 (229)
Q Consensus 27 ~~~~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~ 83 (229)
..-+++|+.++++.+|.++..|++|+.++|++|||+.++|++|.+.|...|..++..
T Consensus 27 ~~~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~~~~G~~~L~~ 83 (95)
T 2jrt_A 27 PLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKALKV 83 (95)
T ss_dssp CSSCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTSCCT
T ss_pred hHhhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHhh
Confidence 445788999999999999999999999999999999999999999997777777654
No 17
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=98.47 E-value=2e-07 Score=69.85 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC-------CcHHHHHHHhCCChHHHHHHHHh
Q psy17316 169 ASPTAWKPEDLEIALEGIRSGQ-------TTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 169 ~~~r~~t~e~r~eaV~~~~~~~-------~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
..+++||+|++.+||+.+.+++ .++.++|.+|||+.+|||+|++.
T Consensus 2 ~~~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 2 TKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 3467899999999999998765 89999999999999999999993
No 18
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=98.35 E-value=7.8e-07 Score=64.63 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHh
Q psy17316 116 TKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKE 159 (229)
Q Consensus 116 ~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~ 159 (229)
+++|+.+++.+||+.+.+| .|+.+||++|||+.+|||+|++++
T Consensus 20 ~~~ys~e~k~~~v~~~~~g-~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 20 LRSLTPRDKIHAIQRIHDG-ESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp CSSCCHHHHHHHHHHHHHT-CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCC-CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5689999999999999665 599999999999999999999865
No 19
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=98.30 E-value=3.3e-07 Score=68.63 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHcCC-------CCHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 30 TKTWTHEDMDAALEALRAGQ-------MSLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~g~-------~S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
+++||.|.+..||+.+.+++ .|+.+||++|||+.+||++|++++...+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~~~ 58 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDT 58 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 56899999999999997765 8999999999999999999999985543
No 20
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=98.28 E-value=2.7e-06 Score=53.57 Aligned_cols=44 Identities=7% Similarity=-0.154 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 170 SPTAWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 170 ~~r~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
++..++++++..|+..+.+| +++.++|..||||.+||++|++..
T Consensus 2 R~~~l~~~~~~~i~~~~~~g-~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 2 RGSALSDTERAQLDVMKLLN-VSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CSCCCCHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHhhH
Confidence 45678899999999987665 999999999999999999999843
No 21
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=98.26 E-value=2.1e-06 Score=54.06 Aligned_cols=45 Identities=4% Similarity=-0.093 Sum_probs=40.0
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHh
Q psy17316 114 GPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKE 159 (229)
Q Consensus 114 G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~ 159 (229)
|++..++++++..++.++.+| +|+.+||+.+||+.+|+++|++.+
T Consensus 1 GR~~~l~~~~~~~i~~~~~~g-~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 1 PRGSALSDTERAQLDVMKLLN-VSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCSCCCCHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHhhH
Confidence 567889999999999988776 599999999999999999999854
No 22
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=98.24 E-value=7e-07 Score=57.18 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHhCC
Q psy17316 114 GPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKEGI 161 (229)
Q Consensus 114 G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~g~ 161 (229)
|++++++++++..++.++.+| .|+.+||+.+||+.+|+++|++..+.
T Consensus 1 GRp~~~~~~~~~~i~~l~~~g-~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 1 GRPRAINKHEQEQISRLLEKG-HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp CCCCSSCTTHHHHHHHHHHTT-CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 567788888888888888777 69999999999999999999987654
No 23
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=98.21 E-value=3.5e-06 Score=62.81 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 170 SPTAWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 170 ~~r~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
+.+.|+.+++.+||+.+..|++++.+||.+|+|+.++++.|.+..
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999944
No 24
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=98.20 E-value=3.4e-05 Score=67.85 Aligned_cols=124 Identities=10% Similarity=0.051 Sum_probs=79.6
Q ss_pred CHHHH-HHHHHHHHcCCCCHHHHHHHcC-------CChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchh
Q psy17316 34 THEDM-DAALEALRAGQMSLTKASVSYG-------IPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSIS 105 (229)
Q Consensus 34 t~e~~-~~AI~~~~~g~~S~~~aA~~~g-------Ip~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls 105 (229)
+..++ ..+|..+.+ |.|..+||+.++ |+++|+++|++++.- |...+..
T Consensus 7 ~~~~~R~~i~~~~~~-G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~-g~~~l~~---------------------- 62 (345)
T 3hot_A 7 NKEQTRTVLIFCFHL-KKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS-GDFDVDD---------------------- 62 (345)
T ss_dssp CHHHHHHHHHHHHHT-TCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT-CCCCCSC----------------------
T ss_pred cHHHHHHHHHHHHHc-CCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC-CCccccC----------------------
Confidence 34444 445555555 779999999976 999999999999853 3222210
Q ss_pred hhhhhhccCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHH
Q psy17316 106 ANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEG 185 (229)
Q Consensus 106 ~~~~~~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~ 185 (229)
....|++.+.+.+.+.+.|+ .+...|+++++..++|+.+|+++++++.|+....+. ..+...+++.+..-++.
T Consensus 63 ----~~r~grp~~~~~~~i~~~v~--~~~~~t~~~ia~~l~vs~~tV~r~L~~~g~~~k~~~-~~~~~l~~~~~~~r~~~ 135 (345)
T 3hot_A 63 ----KEHGKPPKRYEDAELQALLD--EDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGR-WVPHELNERQMERRKNT 135 (345)
T ss_dssp ----CCCCCCCCSSCHHHHHHHHH--HCSCCCHHHHHHHTTSCHHHHHHHHHHTTCEEEECC-EESSCCCHHHHHHHHHH
T ss_pred ----CCCCCCCCcccHHHHHHHHH--hCccchHHHHHHHHCCCHHHHHHHHHHhCCeeeccc-cccccCChhhhhhhHHH
Confidence 01124566666655555443 255679999999999999999999999887643211 11223455555544554
Q ss_pred HHh
Q psy17316 186 IRS 188 (229)
Q Consensus 186 ~~~ 188 (229)
|..
T Consensus 136 ~~~ 138 (345)
T 3hot_A 136 CEI 138 (345)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 25
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=98.05 E-value=4.2e-06 Score=53.41 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHh
Q psy17316 170 SPTAWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 170 ~~r~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
+++.++++++..|++++.+| +++.++|..||||.+|||+|++.
T Consensus 2 Rp~~~~~~~~~~i~~l~~~g-~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 2 RPRAINKHEQEQISRLLEKG-HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCCSSCTTHHHHHHHHHHTT-CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHHH
Confidence 45677888888888887666 99999999999999999999973
No 26
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=98.05 E-value=4.3e-05 Score=67.24 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHhC-------CChHHHHHHHHHh--CCcccC--CCCCCCCCCCHHHHHHHHHHHH
Q psy17316 119 WNEEILNVALDALRAGSISANKASKAYG-------IPSSTLYKIARKE--GIRLAQ--PFNASPTAWKPEDLEIALEGIR 187 (229)
Q Consensus 119 Ys~e~k~~AV~~~~~g~~S~~~~a~k~g-------Ip~sTL~~~ik~~--g~k~~~--~~~~~~r~~t~e~r~eaV~~~~ 187 (229)
...+.+..++.++.+|. |..++++.++ |+.+|+++|++++ |..... +..+++++.+.++..++|+ .
T Consensus 7 ~~~~~R~~i~~~~~~G~-s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~~~i~~~v~--~ 83 (345)
T 3hot_A 7 NKEQTRTVLIFCFHLKK-TAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQALLD--E 83 (345)
T ss_dssp CHHHHHHHHHHHHHTTC-CHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCHHHHHHHHH--H
T ss_pred cHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccHHHHHHHHH--h
Confidence 34556677777788876 9999988855 9999999999875 322222 3346677777766655553 3
Q ss_pred hCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 188 SGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 188 ~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
+...++.++|..++||.+||++.++
T Consensus 84 ~~~~t~~~ia~~l~vs~~tV~r~L~ 108 (345)
T 3hot_A 84 DDAQTQKQLAEQLEVSQQAVSNRLR 108 (345)
T ss_dssp CSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CccchHHHHHHHHCCCHHHHHHHHH
Confidence 5668999999999999999999998
No 27
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=98.05 E-value=7e-06 Score=63.02 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 29 VTKTWTHEDMDAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 29 ~~~kyt~e~~~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.+..||.|++.++|+.+ .+|..+..++|+.|||+++||++|++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~ 49 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNK 49 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhch
Confidence 57889999999999998 5566666799999999999999999964
No 28
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=97.95 E-value=2.9e-05 Score=58.42 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=51.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCC
Q psy17316 27 LTVTKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGP 83 (229)
Q Consensus 27 ~~~~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~ 83 (229)
..-.++|+...++++|.++..|.+|+.+||++|||+.++|.+|.+.|.-.|..+++.
T Consensus 28 ~~~~rRWva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~~G~~aLr~ 84 (101)
T 2oa4_A 28 PANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDALKV 84 (101)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSSSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHHhcc
Confidence 345689999999999999999999999999999999999999999997777777754
No 29
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=97.90 E-value=2.4e-05 Score=60.01 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHH-hCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 171 PTAWKPEDLEIALEGIR-SGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 171 ~r~~t~e~r~eaV~~~~-~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+.||.|++.+||+++. .|..+..++|..||||.+||++|++
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~ 47 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILK 47 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHh
Confidence 56799999999999994 5545556999999999999999998
No 30
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=97.78 E-value=4.5e-05 Score=57.38 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=45.9
Q ss_pred HHhCCChHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhhcC
Q psy17316 143 KAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRS 216 (229)
Q Consensus 143 ~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~~ 216 (229)
.+||||.+++++|+.. .+.+||++++.|.+|+.|||++|+||.+++.+|.+.-+.
T Consensus 22 ~~~dlp~~~~rRWva~-------------------rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 22 TRADLPPANTRRWVAS-------------------RKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp ETTSSCCSCCSCCCHH-------------------HHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred hhcCCChHHHHHHHHH-------------------HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6677777666666553 499999999999999999999999999999999994433
No 31
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=97.66 E-value=4e-05 Score=61.93 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHcC--------CCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 30 TKTWTHEDMDAALEALRAG--------QMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~g--------~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
+++||.+.+.+|+..+..+ ++|+.+||+++||+++|||+|.+.
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 6789999999998766554 789999999999999999999995
No 32
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=97.66 E-value=3.2e-05 Score=61.02 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=39.5
Q ss_pred hccCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCC-hHHHHHHHHHh
Q psy17316 111 KAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIP-SSTLYKIARKE 159 (229)
Q Consensus 111 ~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp-~sTL~~~ik~~ 159 (229)
++.|++++|+++...+..+.+..|. |+.+||+.+||| .+|||+|++++
T Consensus 5 ~k~GRPtk~t~e~~e~I~~~i~~G~-sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 5 PKAGRPSDYMPEVADDICSLLSSGE-SLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp -----CCSCCTTHHHHHHHHHHTTC-CHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCC-cHHHHHhcCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999886 999999999995 79999999853
No 33
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=97.47 E-value=0.00014 Score=58.73 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHhC--------CCcHHHHHHHhCCChHHHHHHHH
Q psy17316 171 PTAWKPEDLEIALEGIRSG--------QTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 171 ~r~~t~e~r~eaV~~~~~~--------~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+.|++|++.+||..+.++ ++|+.++|...|||++|+|+|.+
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 5789999999999887665 68999999999999999999998
No 34
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=97.36 E-value=0.0042 Score=45.80 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh-CCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCC
Q psy17316 37 DMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL-GIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGP 115 (229)
Q Consensus 37 ~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~-gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~ 115 (229)
.+...|+.-....+++.++|+.+||++++|.+..++. |... .+..+
T Consensus 9 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~-----------~~~~~---------------------- 55 (108)
T 3oou_A 9 NVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHF-----------TDYLN---------------------- 55 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCH-----------HHHHH----------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH-----------HHHHH----------------------
Confidence 3445555555668999999999999999999999985 6531 01110
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHH-HHHHHHHh-CCcc
Q psy17316 116 TKSWNEEILNVALDALRAGSISANKASKAYGIPSST-LYKIARKE-GIRL 163 (229)
Q Consensus 116 ~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sT-L~~~ik~~-g~k~ 163 (229)
.--+..|.+++.++.+|+.+||...|-+..+ +.+..++. |+.+
T Consensus 56 -----~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 100 (108)
T 3oou_A 56 -----RYRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHTGETP 100 (108)
T ss_dssp -----HHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred -----HHHHHHHHHHHHcCCCCHHHHHHHcCCCChHHHHHHHHHHhCcCH
Confidence 1124677788888888999999999997755 88888765 7544
No 35
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=97.36 E-value=2.5e-05 Score=64.15 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=0.8
Q ss_pred hhcchhhhhhhhccCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHhC
Q psy17316 100 RAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKEG 160 (229)
Q Consensus 100 ~~G~ls~~~~~~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~g 160 (229)
.+|...+++.|++.|+++.|+++....+.+++.+|. |+.+||+.+||+++|+|+|++..+
T Consensus 124 ~~g~~~~~~~G~~~Gr~~~~~~~~~~~i~~l~~~G~-s~~~Ia~~l~vs~~Tvyr~l~~~~ 183 (193)
T 3uj3_X 124 MAGLAAARNKGRIGGRPPKLTKAEWEQAGRLLAQGI-PRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp TC-----------------------------------------------------------
T ss_pred HHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHhh
Confidence 346667777888889999999999889999998874 999999999999999999998653
No 36
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=97.35 E-value=0.0049 Score=44.93 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=65.3
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHcCCChhhHHHHHHHh-CCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccC
Q psy17316 37 DMDAALEALRA-GQMSLTKASVSYGIPSTTLWQRAHRL-GIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYG 114 (229)
Q Consensus 37 ~~~~AI~~~~~-g~~S~~~aA~~~gIp~sTL~~~i~~~-gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G 114 (229)
.+...|+.-.. +.+++.++|+.+||++++|.+..++. |... .+..+
T Consensus 6 ~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~-----------~~~~~--------------------- 53 (103)
T 3lsg_A 6 LIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPF-----------QDYLL--------------------- 53 (103)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCH-----------HHHHH---------------------
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH-----------HHHHH---------------------
Confidence 44555655444 48999999999999999999999986 6531 01110
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHH-HHHHHHHh-CCcc
Q psy17316 115 PTKSWNEEILNVALDALRAGSISANKASKAYGIPSST-LYKIARKE-GIRL 163 (229)
Q Consensus 115 ~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sT-L~~~ik~~-g~k~ 163 (229)
.--+..|.+++.++..|+.+||...|-+... +.+..++. |..+
T Consensus 54 ------~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~~~G~tP 98 (103)
T 3lsg_A 54 ------QKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYYQITP 98 (103)
T ss_dssp ------HHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCH
T ss_pred ------HHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCH
Confidence 1124677888888888999999999998755 88888765 7543
No 37
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=97.23 E-value=0.00068 Score=46.02 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=30.7
Q ss_pred HHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 40 AALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 40 ~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
.+.+++...+..+.++|+.+||+++||+++++++|+..
T Consensus 23 ~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~gi~~ 60 (63)
T 3e7l_A 23 FIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhCCCC
Confidence 33445545556899999999999999999999999863
No 38
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=97.20 E-value=0.0086 Score=43.99 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh-CCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCC
Q psy17316 37 DMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL-GIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGP 115 (229)
Q Consensus 37 ~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~-gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~ 115 (229)
.+...|+.-....+++.++|+.+||++++|.+..++. |... ... +
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~------------~~~---~------------------- 51 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYSP------------MAF---A------------------- 51 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCH------------HHH---H-------------------
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcCH------------HHH---H-------------------
Confidence 3445555555677999999999999999999999985 5531 111 0
Q ss_pred CCCCCHHHHHHHHHHHHcCC--CCHHHHHHHhCCChHH-HHHHHHHh-CCcc
Q psy17316 116 TKSWNEEILNVALDALRAGS--ISANKASKAYGIPSST-LYKIARKE-GIRL 163 (229)
Q Consensus 116 ~~kYs~e~k~~AV~~~~~g~--~S~~~~a~k~gIp~sT-L~~~ik~~-g~k~ 163 (229)
..--+..|.+++.++. +|+.+||...|-+..+ +.+..++. |+.+
T Consensus 52 ----~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 99 (108)
T 3mn2_A 52 ----KRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMFGEKP 99 (108)
T ss_dssp ----HHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred ----HHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCh
Confidence 0113577888888877 6999999999998866 88887765 7544
No 39
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=97.18 E-value=0.0012 Score=44.52 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 37 DMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 37 ~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
+...+.+.+... .+..++|+.+||+++||+++++++|+.
T Consensus 22 Er~~I~~aL~~~-gn~~~aA~~LGIsr~tL~rklkk~gi~ 60 (61)
T 1g2h_A 22 EAQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKLKQYGIG 60 (61)
T ss_dssp HHHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHh-CCHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 333333344444 489999999999999999999999874
No 40
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=97.14 E-value=0.0058 Score=45.93 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCCCCC
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPTKS 118 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~~k 118 (229)
...|+.-....+++.++|..+||++++|.+.+++.|.. +... +
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~G~s------------~~~~---~---------------------- 55 (120)
T 3mkl_A 13 CTVINNNIAHEWTLARIASELLMSPSLLKKKLREEETS------------YSQL---L---------------------- 55 (120)
T ss_dssp HHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHTTCC------------HHHH---H----------------------
T ss_pred HHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHcCCC------------HHHH---H----------------------
Confidence 33443333457999999999999999999999975332 1111 1
Q ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHH-HHHHHHHh-CCcc
Q psy17316 119 WNEEILNVALDALRAGSISANKASKAYGIPSST-LYKIARKE-GIRL 163 (229)
Q Consensus 119 Ys~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sT-L~~~ik~~-g~k~ 163 (229)
..--+..|.+++.++..|+.+||...|-.... +.+..++. |+.+
T Consensus 56 -~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP 101 (120)
T 3mkl_A 56 -TECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTP 101 (120)
T ss_dssp -HHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHHHHHHHHHSSCH
T ss_pred -HHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCH
Confidence 01124677888877888999999999998755 88888765 7544
No 41
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=97.11 E-value=0.0058 Score=45.38 Aligned_cols=88 Identities=19% Similarity=0.169 Sum_probs=64.1
Q ss_pred HHHHHHHHH---cCCCCHHHHHHHcCCChhhHHHHHHHh-CCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhcc
Q psy17316 38 MDAALEALR---AGQMSLTKASVSYGIPSTTLWQRAHRL-GIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAY 113 (229)
Q Consensus 38 ~~~AI~~~~---~g~~S~~~aA~~~gIp~sTL~~~i~~~-gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~ 113 (229)
+..+++.+. ...+++.++|..+||++++|.+..++. |... .....
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~------------~~~~~------------------- 57 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVP------------SKYYL------------------- 57 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCH------------HHHHH-------------------
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH------------HHHHH-------------------
Confidence 344444443 356999999999999999999999985 5531 11100
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHH-HHHHHHHh-CCcc
Q psy17316 114 GPTKSWNEEILNVALDALRAGSISANKASKAYGIPSST-LYKIARKE-GIRL 163 (229)
Q Consensus 114 G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sT-L~~~ik~~-g~k~ 163 (229)
.--+..|.+++.++..|+.+||...|-+... +.+..++. |+.+
T Consensus 58 -------~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~G~tP 102 (113)
T 3oio_A 58 -------ELRLNRARQLLQQTSKSIVQIGLACGFSSGPHFSSTYRNHFNITP 102 (113)
T ss_dssp -------HHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCH
T ss_pred -------HHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCH
Confidence 1125778888888888999999999998866 88888765 7644
No 42
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=97.09 E-value=0.00041 Score=54.57 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=38.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHhCC-ChHHHHHHHH
Q psy17316 168 NASPTAWKPEDLEIALEGIRSGQTTVQRASAEYGI-PSGTLYGRCK 212 (229)
Q Consensus 168 ~~~~r~~t~e~r~eaV~~~~~~~~s~~eAA~~fgV-p~~tv~~~vk 212 (229)
.+++++|+++.-.+|.++|..| ++..+++..+|| +++|||+|++
T Consensus 7 ~GRPtk~t~e~~e~I~~~i~~G-~sl~~i~~~~~~ps~~T~~~W~~ 51 (140)
T 4dyq_A 7 AGRPSDYMPEVADDICSLLSSG-ESLLKVCKRPGMPDKSTVFRWLA 51 (140)
T ss_dssp ---CCSCCTTHHHHHHHHHHTT-CCHHHHHTSTTCCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-CcHHHHHhcCCCCCHHHHHHHHH
Confidence 4678899999999999998877 899999999999 6999999997
No 43
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=97.07 E-value=0.01 Score=43.58 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=63.2
Q ss_pred HHHHHHHHc-CCCCHHHHHHHcCCChhhHHHHHHHh-CCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCCC
Q psy17316 39 DAALEALRA-GQMSLTKASVSYGIPSTTLWQRAHRL-GIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPT 116 (229)
Q Consensus 39 ~~AI~~~~~-g~~S~~~aA~~~gIp~sTL~~~i~~~-gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~ 116 (229)
...|+.-.. ..+++.++|+.+||++++|.+..++. |... .....
T Consensus 9 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~------------~~~~~---------------------- 54 (107)
T 2k9s_A 9 CQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISV------------LSWRE---------------------- 54 (107)
T ss_dssp HHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCH------------HHHHH----------------------
T ss_pred HHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCH------------HHHHH----------------------
Confidence 333433333 68999999999999999999999984 6531 11100
Q ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHH-HHHHHHHh-CCcc
Q psy17316 117 KSWNEEILNVALDALRAGSISANKASKAYGIPSST-LYKIARKE-GIRL 163 (229)
Q Consensus 117 ~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sT-L~~~ik~~-g~k~ 163 (229)
.--+..|.+++.+..+|+.+||...|-+..+ +.+..++. |..+
T Consensus 55 ----~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 99 (107)
T 2k9s_A 55 ----DQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASP 99 (107)
T ss_dssp ----HHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred ----HHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCH
Confidence 1124777888887888999999999999866 88887765 7544
No 44
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=97.06 E-value=0.0016 Score=52.81 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcchhhhhhhhccCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHH
Q psy17316 91 ILNVALDALRAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARK 158 (229)
Q Consensus 91 ~~~~a~~ll~~G~ls~~~~~~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~ 158 (229)
+++...+-..+|...+++.|+..|.++.|+++ .+.+.+.+|. |+.+||+.+||+++|+|+++++
T Consensus 118 E~~~i~~R~~~g~~~~~~~G~~~Gr~~~~~~~---~i~~~~~~G~-s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 118 ERQRILERTNEGRQEAMAKGVVFGRKRKIDRD---AVLNMWQQGL-GASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCSSCCCSCHH---HHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCCCCCCCHH---HHHHHHHCCC-CHHHHHHHHCcCHHHHHHHHhh
Confidence 33334444556877888888889999999765 3456777765 9999999999999999999874
No 45
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=97.02 E-value=0.00065 Score=56.38 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=47.5
Q ss_pred HhhcchhhhhhhhccCCCCCCCHHH--------HHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHh
Q psy17316 99 LRAGSISANKASKAYGPTKSWNEEI--------LNVALDALRAGSISANKASKAYGIPSSTLYKIARKE 159 (229)
Q Consensus 99 l~~G~ls~~~~~~~~G~~~kYs~e~--------k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~ 159 (229)
.++|...+++.|++.|++..|..+. ...+.+.+.+|. |+.+||+.+||+++|+|+++++.
T Consensus 132 ~~~g~~~~~~~G~~~Grp~gy~~~~~~~~~a~iv~~i~~~~~~G~-s~~~Ia~~l~is~~tv~r~l~~~ 199 (209)
T 2r0q_C 132 QAQGIQVAKEKGVYKGRPLLYSPNAKDPQKRVIYHRVVEMLEEGQ-AISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp HHHHHHHHHHHTCCCCCCCSSSTTCSSHHHHHHHHHHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCcCCCCCCCCccccchHHHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHhcc
Confidence 3456667777888888887887542 456777888775 99999999999999999998754
No 46
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=96.97 E-value=0.0015 Score=47.06 Aligned_cols=35 Identities=6% Similarity=-0.001 Sum_probs=28.9
Q ss_pred HHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCC
Q psy17316 41 ALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGI 75 (229)
Q Consensus 41 AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi 75 (229)
+.+.+...+-.+.++|+.+||+++||++|+++||+
T Consensus 46 I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk~gi 80 (81)
T 1umq_A 46 IQRIYEMCDRNVSETARRLNMHRRTLQRILAKRSP 80 (81)
T ss_dssp HHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred HHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 33455554558999999999999999999999986
No 47
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=96.91 E-value=0.00017 Score=59.32 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=0.0
Q ss_pred hcchhhhhhhhccCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHhC
Q psy17316 101 AGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKEG 160 (229)
Q Consensus 101 ~G~ls~~~~~~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~g 160 (229)
+|...+++.|+..|+++.++++....+.+++.+|. |+.+||+.+||+.+|+|+|+++..
T Consensus 125 ~g~~~~~~~G~~~Gr~p~~~~~~v~~i~~l~~~G~-s~~~Ia~~l~vs~~T~yr~l~~~~ 183 (193)
T 3plo_X 125 AGLAAARNKGRIGGRPPKLTKAEWEQAGRLLAQGI-PRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHcCCcCCcCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHCcCHHHHHHHHhhhH
Confidence 46666777777788888888888888888888774 999999999999999999988643
No 48
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.89 E-value=0.001 Score=43.26 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+++...++..+ ..|+|+.+||+.+||+++||++|++
T Consensus 18 ~~~~~~i~~l~-~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELA-KMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHH-HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56666666554 5678999999999999999999986
No 49
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=96.83 E-value=0.012 Score=44.85 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHH---cCCCCHHHHHHHcCCChhhHHHHHHHh-CCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhh
Q psy17316 34 THEDMDAALEALR---AGQMSLTKASVSYGIPSTTLWQRAHRL-GIHTPKKEGPTKSWNEEILNVALDALRAGSISANKA 109 (229)
Q Consensus 34 t~e~~~~AI~~~~---~g~~S~~~aA~~~gIp~sTL~~~i~~~-gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~ 109 (229)
..+.+..+++.+. ...+++.++|+.+||+.++|.+..++. |... .+..+
T Consensus 9 ~~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~-----------~~~l~---------------- 61 (129)
T 1bl0_A 9 DAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSL-----------GQYIR---------------- 61 (129)
T ss_dssp CHHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCH-----------HHHHH----------------
T ss_pred hHHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH-----------HHHHH----------------
Confidence 3444455554443 346999999999999999999999985 6531 01110
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHH-HHHHHHHh-CCcc
Q psy17316 110 SKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSST-LYKIARKE-GIRL 163 (229)
Q Consensus 110 ~~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sT-L~~~ik~~-g~k~ 163 (229)
.--+..|.+++.++..|+.+||...|-+... +.+..++. |+.+
T Consensus 62 -----------~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 106 (129)
T 1bl0_A 62 -----------SRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPP 106 (129)
T ss_dssp -----------HHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCH
T ss_pred -----------HHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCH
Confidence 1124678888888888999999999999866 88887765 7644
No 50
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.71 E-value=0.0032 Score=40.79 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 176 PEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 176 ~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
++....|+.+ ...++++.++|..+|||.+||++|++
T Consensus 18 ~~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5656666666 45669999999999999999999985
No 51
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=96.68 E-value=0.0011 Score=48.26 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=27.2
Q ss_pred HHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCC
Q psy17316 43 EALRAGQMSLTKASVSYGIPSTTLWQRAHRLGI 75 (229)
Q Consensus 43 ~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi 75 (229)
+.+...+.++.++|+.+||+++||+++++++|+
T Consensus 58 ~aL~~~~gn~~~aA~~LGIsr~tL~rklkk~~i 90 (91)
T 1ntc_A 58 TALRHTQGHKQEAARLLGWGAATLTAKLKELGM 90 (91)
T ss_dssp HHHHHTTTCTTHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhCc
Confidence 344444557889999999999999999999876
No 52
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=96.65 E-value=0.0018 Score=56.04 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 38 MDAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 38 ~~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+-+.|+.+ ..-|+|+.++|++.||+++||.+|-.
T Consensus 31 ~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~ 65 (311)
T 4ich_A 31 LRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLN 65 (311)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHc
Confidence 33444443 45689999999999999999999976
No 53
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=96.56 E-value=0.0047 Score=43.70 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.9
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHhCCCCC
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRLGIHTP 78 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~ 78 (229)
.+++.++|+.+||+..||+.|-+..|+-.|
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~~gl~~p 34 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERRYGFPRP 34 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHHTCCSCC
T ss_pred cccHHHHHHHHCcCHHHHHHHHHhCCCCCC
Confidence 368999999999999999999998776544
No 54
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=96.53 E-value=0.015 Score=49.37 Aligned_cols=92 Identities=20% Similarity=0.168 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhh
Q psy17316 30 TKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSISANKA 109 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~ 109 (229)
+..+++-+...++..+.+.|+|..+||+.+|+++++|.+.++-.++ +++ ..+++.+|.++..++
T Consensus 115 R~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~l~~l------------~~~----v~~~l~~g~is~~~A 178 (230)
T 1vz0_A 115 REDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL------------PPE----ALEALERGEITAGHA 178 (230)
T ss_dssp STTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHGGGS------------CHH----HHHHHHTTSSCHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHcC------------CHH----HHHHHHcCCCCHHHH
Confidence 6788999998888888788999999999999999999999885422 333 556777888776665
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHcCCCCHHHH
Q psy17316 110 SKAYGPTKSWNEEILNVALDALRAGSISANKA 141 (229)
Q Consensus 110 ~~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~ 141 (229)
-...+.. .+..+.+.+.+..+++|++++
T Consensus 179 ~~L~~l~----~~~q~~l~~~i~~~~lsv~~~ 206 (230)
T 1vz0_A 179 RALLMLE----PEDRLWGLKEILEKGLSVRQA 206 (230)
T ss_dssp HHHHTSC----GGGHHHHHHHHHHTCCCHHHH
T ss_pred HHHHcCC----cHHHHHHHHHHHHcCCCHHHH
Confidence 4443332 223333677777777888776
No 55
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=96.44 E-value=0.013 Score=42.61 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=53.8
Q ss_pred cCCCCHHHHHHHhCCChHHHHHHHHHh-CCcccCCCCCCCCCCCHH-HHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHH
Q psy17316 133 AGSISANKASKAYGIPSSTLYKIARKE-GIRLAQPFNASPTAWKPE-DLEIALEGIRSGQTTVQRASAEYGIPSGTLYGR 210 (229)
Q Consensus 133 ~g~~S~~~~a~k~gIp~sTL~~~ik~~-g~k~~~~~~~~~r~~t~e-~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~ 210 (229)
++.+++.++|+.+||+.++|.+..++. |.... .|=.. -...|.+.+.+.++++.++|...|-+.++-...
T Consensus 17 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~--------~~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F~r 88 (103)
T 3lsg_A 17 DSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQ--------DYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFIT 88 (103)
T ss_dssp CTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCHH--------HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHH--------HHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHHHH
Confidence 347899999999999999999999977 75543 23223 345566777778899999999999966554444
Q ss_pred H
Q psy17316 211 C 211 (229)
Q Consensus 211 v 211 (229)
+
T Consensus 89 ~ 89 (103)
T 3lsg_A 89 K 89 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 56
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=96.42 E-value=0.0047 Score=45.87 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.1
Q ss_pred HHHcCCCCHHHHHHHcCCChhhHHHHHHHhCC
Q psy17316 44 ALRAGQMSLTKASVSYGIPSTTLWQRAHRLGI 75 (229)
Q Consensus 44 ~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi 75 (229)
.+...+-.+..+|+.+||+++||+++++++|+
T Consensus 66 aL~~~~gn~~~AA~~LGIsR~TL~rkLkk~gi 97 (98)
T 1eto_A 66 VMQYTLGNQTRAALMMGINRGTLRKKLKKYGM 97 (98)
T ss_dssp HHHHTTTCHHHHHHHHTSCHHHHHHHHHHTTC
T ss_pred HHHHhCCCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 34344448999999999999999999999986
No 57
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=96.38 E-value=0.0077 Score=42.56 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=47.2
Q ss_pred CCHHHHHHHhCCChHHHHHHHHHhCCcccCCCC-CCCCCCCHHHH--HHHHHHHH-hCCCcHHHHHHHh
Q psy17316 136 ISANKASKAYGIPSSTLYKIARKEGIRLAQPFN-ASPTAWKPEDL--EIALEGIR-SGQTTVQRASAEY 200 (229)
Q Consensus 136 ~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~-~~~r~~t~e~r--~eaV~~~~-~~~~s~~eAA~~f 200 (229)
+++.++|+.+||+..||+.|.+..|+-...... +..|.|+.++. +..|..+. +-+++..++...+
T Consensus 6 ~~i~e~A~~~gvs~~tlR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l 74 (81)
T 2jml_A 6 LRIRTIARMTGIREATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQV 74 (81)
T ss_dssp EEHHHHHHTTSTTHHHHHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 589999999999999999999865643221112 34577887754 45577777 7779988887754
No 58
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=96.34 E-value=0.015 Score=42.63 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=53.4
Q ss_pred HcCCCCHHHHHHHhCCChHHHHHHHHHh-CCcccCCCCCCCCCCCHH-HHHHHHHHHHhCCCcHHHHHHHhCCChHHHHH
Q psy17316 132 RAGSISANKASKAYGIPSSTLYKIARKE-GIRLAQPFNASPTAWKPE-DLEIALEGIRSGQTTVQRASAEYGIPSGTLYG 209 (229)
Q Consensus 132 ~~g~~S~~~~a~k~gIp~sTL~~~ik~~-g~k~~~~~~~~~r~~t~e-~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~ 209 (229)
....+++.++|+.+||+.++|.+..++. |.... .|-.. -...|.+.+.+.++++.++|...|-+.++-..
T Consensus 18 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~--------~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~ 89 (108)
T 3oou_A 18 FSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFT--------DYLNRYRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFY 89 (108)
T ss_dssp TTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHH--------HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHH--------HHHHHHHHHHHHHHHHcCCCCHHHHHHHcCCCChHHHH
Confidence 3456899999999999999999999876 75443 23223 34556667777889999999999996655444
Q ss_pred H
Q psy17316 210 R 210 (229)
Q Consensus 210 ~ 210 (229)
.
T Consensus 90 r 90 (108)
T 3oou_A 90 R 90 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 59
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=96.31 E-value=0.0098 Score=40.11 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=28.7
Q ss_pred HHHcCCCCHHHHHHHhCCChHHHHHHHHHhCCccc
Q psy17316 130 ALRAGSISANKASKAYGIPSSTLYKIARKEGIRLA 164 (229)
Q Consensus 130 ~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~g~k~~ 164 (229)
++...+.++.++|+..||+++|||++++++|+...
T Consensus 27 aL~~~~gn~~~aA~~LGisr~tL~rklkk~gi~~~ 61 (63)
T 3e7l_A 27 KLREYDYDLKRTAEEIGIDLSNLYRKIKSLNIRVK 61 (63)
T ss_dssp HHHHTTTCHHHHHHHHTCCHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCHHHHHHHHCcCHHHHHHHHHHhCCCCC
Confidence 33333458999999999999999999999998653
No 60
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=96.22 E-value=0.0036 Score=49.17 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=41.9
Q ss_pred CCCCCCCCHHHHHHHHHHH--HcCCCCHHHHHH----Hc--CCChhhHHHHHHH
Q psy17316 27 LTVTKTWTHEDMDAALEAL--RAGQMSLTKASV----SY--GIPSTTLWQRAHR 72 (229)
Q Consensus 27 ~~~~~kyt~e~~~~AI~~~--~~g~~S~~~aA~----~~--gIp~sTL~~~i~~ 72 (229)
...+..+|.+++.++++.+ .+++++..++|+ +| ||+++||.+|++.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 4568899999999999998 568999999999 99 9999999999986
No 61
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=96.18 E-value=0.043 Score=46.32 Aligned_cols=90 Identities=8% Similarity=0.131 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCCC
Q psy17316 37 DMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPT 116 (229)
Q Consensus 37 ~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~ 116 (229)
.....|+.-....+|+.++|+.+||++++|.+..+..|.. +... +
T Consensus 173 ~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~G~t------------~~~~---l-------------------- 217 (276)
T 3gbg_A 173 KISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVK------------FREL---I-------------------- 217 (276)
T ss_dssp HHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHTTTCC------------HHHH---H--------------------
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHHcCCC------------HHHH---H--------------------
Confidence 3344444444567999999999999999999999744332 1111 0
Q ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHH-HHHHHHHh-CCccc
Q psy17316 117 KSWNEEILNVALDALRAGSISANKASKAYGIPSST-LYKIARKE-GIRLA 164 (229)
Q Consensus 117 ~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sT-L~~~ik~~-g~k~~ 164 (229)
..--+.+|.+++.++.+|+.+||...|-+..+ ..+..|++ |+.+.
T Consensus 218 ---~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fkk~~G~tP~ 264 (276)
T 3gbg_A 218 ---NSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPS 264 (276)
T ss_dssp ---HHHHHHHHHHHHHHTCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred ---HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 01235788888888889999999999998866 87777765 76543
No 62
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=96.18 E-value=0.017 Score=42.71 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=58.0
Q ss_pred HHHHHHHHHc---CCCCHHHHHHHhCCChHHHHHHHHHh-CCcccCCCCCCCCCCCHH-HHHHHHHHHHhCCCcHHHHHH
Q psy17316 124 LNVALDALRA---GSISANKASKAYGIPSSTLYKIARKE-GIRLAQPFNASPTAWKPE-DLEIALEGIRSGQTTVQRASA 198 (229)
Q Consensus 124 k~~AV~~~~~---g~~S~~~~a~k~gIp~sTL~~~ik~~-g~k~~~~~~~~~r~~t~e-~r~eaV~~~~~~~~s~~eAA~ 198 (229)
..++++.+.+ ..+++.++|+.+||+.++|.+..++. |.... .|-.. -...|.+.+...++++.++|.
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~--------~~~~~~Rl~~A~~lL~~~~~~i~eIA~ 80 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPS--------KYYLELRLNRARQLLQQTSKSIVQIGL 80 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHH--------HHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHH--------HHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4455555544 34799999999999999999999976 75443 23223 345567777777899999999
Q ss_pred HhCCChHHHHHHH
Q psy17316 199 EYGIPSGTLYGRC 211 (229)
Q Consensus 199 ~fgVp~~tv~~~v 211 (229)
..|-+..+-...+
T Consensus 81 ~~Gf~~~s~F~r~ 93 (113)
T 3oio_A 81 ACGFSSGPHFSST 93 (113)
T ss_dssp HTTCSCHHHHHHH
T ss_pred HHCCCCHHHHHHH
Confidence 9998766544443
No 63
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=96.16 E-value=0.021 Score=41.78 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=53.9
Q ss_pred HcCCCCHHHHHHHhCCChHHHHHHHHHh-CCcccCCCCCCCCCCCHHH-HHHHHHHHHhCC--CcHHHHHHHhCCChHHH
Q psy17316 132 RAGSISANKASKAYGIPSSTLYKIARKE-GIRLAQPFNASPTAWKPED-LEIALEGIRSGQ--TTVQRASAEYGIPSGTL 207 (229)
Q Consensus 132 ~~g~~S~~~~a~k~gIp~sTL~~~ik~~-g~k~~~~~~~~~r~~t~e~-r~eaV~~~~~~~--~s~~eAA~~fgVp~~tv 207 (229)
....+++.++|+.+|++.++|.+..++. |.... .|-... ...|.+.+..++ +++.++|...|-+.++-
T Consensus 15 ~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~--------~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~ 86 (108)
T 3mn2_A 15 WMRPITIEKLTALTGISSRGIFKAFQRSRGYSPM--------AFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGH 86 (108)
T ss_dssp TTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHH--------HHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHH
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcCHH--------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHH
Confidence 3456899999999999999999999976 75443 232233 455667777776 69999999999987665
Q ss_pred HHHH
Q psy17316 208 YGRC 211 (229)
Q Consensus 208 ~~~v 211 (229)
...+
T Consensus 87 F~r~ 90 (108)
T 3mn2_A 87 FARD 90 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 64
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=96.14 E-value=0.029 Score=52.21 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=26.0
Q ss_pred HHHHHcCCCCHH----HHHHHcCCChhhHHHHHHHhC
Q psy17316 42 LEALRAGQMSLT----KASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 42 I~~~~~g~~S~~----~aA~~~gIp~sTL~~~i~~~g 74 (229)
+..+..+|.+.. .+|+++||+.+||++|+++|.
T Consensus 41 v~~l~~~g~~~~~a~~~~a~~~gvS~~Tl~rW~~~y~ 77 (529)
T 4fcy_A 41 ADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQ 77 (529)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344556777854 459999999999999999873
No 65
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=95.95 E-value=0.033 Score=41.42 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=45.8
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCCCCCCCHHH--HHH
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPTKSWNEEI--LNV 126 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~~kYs~e~--k~~ 126 (229)
++++.++|+.+|||..||+.|-+. |.-.|..... |....|+.++ ++.
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~-Gll~p~~r~~------------------------------~g~R~Y~~~dl~~l~ 49 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDI-GLLVPSERSH------------------------------AGHRRYSDADLDRLQ 49 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH-TSSCCSEECS------------------------------SCCEEBCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHC-CCCCCCccCC------------------------------CCCeecCHHHHHHHH
Confidence 378999999999999999999886 5433321111 0123344444 344
Q ss_pred HHHHHHcCCCCHHHHHHHhCCCh
Q psy17316 127 ALDALRAGSISANKASKAYGIPS 149 (229)
Q Consensus 127 AV~~~~~g~~S~~~~a~k~gIp~ 149 (229)
.|..+.+-++|+.+|......+.
T Consensus 50 ~I~~lr~~G~sl~~I~~~l~~~~ 72 (108)
T 2vz4_A 50 QILFYRELGFPLDEVAALLDDPA 72 (108)
T ss_dssp HHHHHHHTTCCHHHHHHHHTC--
T ss_pred HHHHHHHCCCCHHHHHHHHhCCc
Confidence 56666676789999988877653
No 66
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=95.91 E-value=0.0013 Score=53.80 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhhcCCCCC
Q psy17316 169 ASPTAWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRSTPRP 220 (229)
Q Consensus 169 ~~~r~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~~~~~~ 220 (229)
+++..++++...+|.+++.+| +++.++|..+|||.+|||+|++.....+.+
T Consensus 138 Gr~~~~~~~~~~~i~~l~~~G-~s~~~Ia~~l~vs~~Tvyr~l~~~~~~~~~ 188 (193)
T 3uj3_X 138 GRPPKLTKAEWEQAGRLLAQG-IPRKQVALIYDVALSTLYKKHPAKRAHIEN 188 (193)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHhhhcCCC
Confidence 445567777778888887766 899999999999999999999865544433
No 67
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=95.84 E-value=0.028 Score=42.65 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHhCCChHHHHHHHHHh-CCcccCCCCCCCCCCCHHHH-HHHHHHHHhCCCcHHH
Q psy17316 121 EEILNVALDALRA---GSISANKASKAYGIPSSTLYKIARKE-GIRLAQPFNASPTAWKPEDL-EIALEGIRSGQTTVQR 195 (229)
Q Consensus 121 ~e~k~~AV~~~~~---g~~S~~~~a~k~gIp~sTL~~~ik~~-g~k~~~~~~~~~r~~t~e~r-~eaV~~~~~~~~s~~e 195 (229)
.+...++++.+.+ ..+++.++|+.+|++.++|.+..++. |.... .|-.+.| ..|.+.+...++++.+
T Consensus 10 ~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~--------~~l~~~Rl~~A~~lL~~~~~si~~ 81 (129)
T 1bl0_A 10 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLG--------QYIRSRKMTEIAQKLKESNEPILY 81 (129)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHH--------HHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHH--------HHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3445555555544 35799999999999999999999876 75443 2323334 4567777778899999
Q ss_pred HHHHhCCChHHHHHH
Q psy17316 196 ASAEYGIPSGTLYGR 210 (229)
Q Consensus 196 AA~~fgVp~~tv~~~ 210 (229)
+|...|-+.++-...
T Consensus 82 IA~~~Gf~~~s~F~r 96 (129)
T 1bl0_A 82 LAERYGFESQQTLTR 96 (129)
T ss_dssp HHHHTTCSCHHHHHH
T ss_pred HHHHHCCCCHHHHHH
Confidence 999999886655444
No 68
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=95.79 E-value=0.03 Score=40.97 Aligned_cols=79 Identities=13% Similarity=0.280 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHhCCChHHHHHHHHHh-CCcccCCCCCCCCCCCHHH-HHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHH
Q psy17316 134 GSISANKASKAYGIPSSTLYKIARKE-GIRLAQPFNASPTAWKPED-LEIALEGIRSGQTTVQRASAEYGIPSGTLYGRC 211 (229)
Q Consensus 134 g~~S~~~~a~k~gIp~sTL~~~ik~~-g~k~~~~~~~~~r~~t~e~-r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~v 211 (229)
..+++.++|+.+|++.++|.+..++. |.... .|-... ...|.+.+...++++.++|...|-+.++-...+
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~--------~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~ 90 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQLGISVL--------SWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRV 90 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHH--------HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHH--------HHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHH
Confidence 56799999999999999999999876 75543 232233 455666777788999999999999876655544
Q ss_pred HhhcCCCCC
Q psy17316 212 KLSRSTPRP 220 (229)
Q Consensus 212 k~~~~~~~~ 220 (229)
=...-|-+|
T Consensus 91 Fk~~~G~tP 99 (107)
T 2k9s_A 91 FKKCTGASP 99 (107)
T ss_dssp HHHHHSSCH
T ss_pred HHHHHCcCH
Confidence 333334444
No 69
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=95.73 E-value=0.13 Score=47.83 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=48.3
Q ss_pred HHHHHHcCCCC----HHHHHHHhCCChHHHHHHHHHh-CC------cccCCCC------CCCCCCCHHHHHHHHHHHHhC
Q psy17316 127 ALDALRAGSIS----ANKASKAYGIPSSTLYKIARKE-GI------RLAQPFN------ASPTAWKPEDLEIALEGIRSG 189 (229)
Q Consensus 127 AV~~~~~g~~S----~~~~a~k~gIp~sTL~~~ik~~-g~------k~~~~~~------~~~r~~t~e~r~eaV~~~~~~ 189 (229)
+|..+..++.+ +..+|+++||+.+|||+|.+++ +. ..+.|.. .....++++....++......
T Consensus 40 ~v~~l~~~g~~~~~a~~~~a~~~gvS~~Tl~rW~~~y~~~~~~~gl~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~yl~~ 119 (529)
T 4fcy_A 40 AADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKSEFDEDAWQFLIADYLRP 119 (529)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSCGGGHHHHHC------------CCCCHHHHHHHHHHHTST
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcccCceecccCCCCCCCCCCcCcCCHHHHHHHHHHHhCc
Confidence 33434455556 4556999999999999999765 21 1222221 112345666555555544443
Q ss_pred -CCcHHH-------HHHHhC--C-ChHHHHHHHH
Q psy17316 190 -QTTVQR-------ASAEYG--I-PSGTLYGRCK 212 (229)
Q Consensus 190 -~~s~~e-------AA~~fg--V-p~~tv~~~vk 212 (229)
..+... .+..-| | |+.||+++++
T Consensus 120 ~~~s~~~~~~~~~~~~~~~g~~~PS~~tv~r~l~ 153 (529)
T 4fcy_A 120 EKPAFRKCYERLELAAREHGWSIPSRATAFRRIQ 153 (529)
T ss_dssp TCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 334332 333444 4 7999999987
No 70
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=95.65 E-value=0.014 Score=43.60 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
......+..|.+|+++||+.+||+++||.|--+
T Consensus 48 ~~l~~~L~~ge~TQREIA~~lGiS~stISRi~r 80 (101)
T 1jhg_A 48 VRIIEELLRGEMSQRELKNELGAGIATITRGSN 80 (101)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhhhHHHH
Confidence 445555567779999999999999999999833
No 71
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=95.60 E-value=0.019 Score=39.21 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=32.6
Q ss_pred HHHHHHHHHHh--CCCcHHHHHHHhCCChHHHHHHHH-hhcCC
Q psy17316 178 DLEIALEGIRS--GQTTVQRASAEYGIPSGTLYGRCK-LSRST 217 (229)
Q Consensus 178 ~r~eaV~~~~~--~~~s~~eAA~~fgVp~~tv~~~vk-~~~~~ 217 (229)
.+.+|++.+.+ ..++..++|..+|||.++|++.++ +...|
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G 53 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKED 53 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 46678888765 358999999999999999999998 44444
No 72
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=95.57 E-value=0.043 Score=40.79 Aligned_cols=68 Identities=7% Similarity=0.071 Sum_probs=43.8
Q ss_pred CCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCCCCCCCHHH--HHHH
Q psy17316 50 MSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPTKSWNEEI--LNVA 127 (229)
Q Consensus 50 ~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~~kYs~e~--k~~A 127 (229)
+++.++|+.+|||..||+.|-+. |.-.|..... |....|++++ +...
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~-Gll~p~~~~~------------------------------~g~R~Y~~~dl~~l~~ 51 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNI-ELLNPSALTD------------------------------AGYRLYSDADLERLQQ 51 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHT-TSSCCSEECT------------------------------TCCEEBCHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHC-CCCCCCeECC------------------------------CCCeeeCHHHHHHHHH
Confidence 68999999999999999999874 5433321100 1123344444 2344
Q ss_pred HHHHHcCCCCHHHHHHHhCCC
Q psy17316 128 LDALRAGSISANKASKAYGIP 148 (229)
Q Consensus 128 V~~~~~g~~S~~~~a~k~gIp 148 (229)
|..+.+-++|+.+|......+
T Consensus 52 I~~l~~~G~~l~~I~~~l~~~ 72 (109)
T 1r8d_A 52 ILFFKEIGFRLDEIKEMLDHP 72 (109)
T ss_dssp HHHHHHTTCCHHHHHHHHHCT
T ss_pred HHHHHHCCCCHHHHHHHHhCC
Confidence 555666667888888776554
No 73
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=95.53 E-value=0.009 Score=46.84 Aligned_cols=43 Identities=7% Similarity=-0.013 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHH--HhCCCcHHHHHH----Hh--CCChHHHHHHHH
Q psy17316 170 SPTAWKPEDLEIALEGI--RSGQTTVQRASA----EY--GIPSGTLYGRCK 212 (229)
Q Consensus 170 ~~r~~t~e~r~eaV~~~--~~~~~s~~eAA~----~f--gVp~~tv~~~vk 212 (229)
....+|.+++.+|+++. .+++++..++|. +| +||.+||.+|++
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk 58 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILS 58 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHH
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHh
Confidence 45678999999999999 457899999999 99 999999999998
No 74
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=95.48 E-value=0.15 Score=45.64 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh-CCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCCCC
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL-GIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPTK 117 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~-gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~~ 117 (229)
...|+.-....+++.++|+.+|+++++|.+.+++. |... .+..+
T Consensus 311 ~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~~~g~s~-----------~~~~~------------------------ 355 (412)
T 4fe7_A 311 MHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETI-----------HAMIH------------------------ 355 (412)
T ss_dssp HHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHHHHSSCH-----------HHHHH------------------------
T ss_pred HHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH-----------HHHHH------------------------
Confidence 34444444578999999999999999999999986 6531 01111
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHH-HHHHHHHh-CCcc
Q psy17316 118 SWNEEILNVALDALRAGSISANKASKAYGIPSST-LYKIARKE-GIRL 163 (229)
Q Consensus 118 kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sT-L~~~ik~~-g~k~ 163 (229)
.--+..|.+++.++.+|+.+||...|-+..+ +.+..|+. |..+
T Consensus 356 ---~~r~~~a~~~L~~~~~~i~~ia~~~Gf~~~~~f~~~Fk~~~g~tP 400 (412)
T 4fe7_A 356 ---AEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTP 400 (412)
T ss_dssp ---HHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHSSSCH
T ss_pred ---HHHHHHHHHHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCH
Confidence 1124677888888888999999999997755 88888875 6544
No 75
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=95.34 E-value=0.058 Score=40.08 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=49.1
Q ss_pred CCHHHHHHHhCCChHHHHHHHHHhCCcccCC-CCCCCCCCCHHH--HHHHHHHHHhCCCcHHHHHHHhCCCh
Q psy17316 136 ISANKASKAYGIPSSTLYKIARKEGIRLAQP-FNASPTAWKPED--LEIALEGIRSGQTTVQRASAEYGIPS 204 (229)
Q Consensus 136 ~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~-~~~~~r~~t~e~--r~eaV~~~~~~~~s~~eAA~~fgVp~ 204 (229)
+++.++|+.+|||..||+.|.+. |.-.... ..+..|.|+.++ ++..|..+.+-+++..++...+..+.
T Consensus 2 ~~i~e~A~~~gvs~~tLR~ye~~-Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~~ 72 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDDI-GLLVPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDDPA 72 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHH-TSSCCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC--
T ss_pred CCHHHHHHHHCcCHHHHHHHHHC-CCCCCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhCCc
Confidence 58899999999999999999884 5422111 123457787764 45666777777899999999887764
No 76
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=95.32 E-value=0.033 Score=37.15 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 31 ~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
...++.+.. ++....-.|+|..+||..+||+.+|+++++++
T Consensus 14 ~~L~~~~r~-il~l~~~~g~s~~eIA~~lgis~~tv~~~~~r 54 (70)
T 2o8x_A 14 ADLTTDQRE-ALLLTQLLGLSYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp TSSCHHHHH-HHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HhCCHHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345666654 44443344789999999999999999999886
No 77
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=95.31 E-value=0.053 Score=40.50 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=54.4
Q ss_pred HHHHHHHHHc---CCCCHHHHHHHhCCChHHHHHHHHHhCCcccCCCCCCCCCCCHHHHH-HHHHHHHhCCCcHHHHHHH
Q psy17316 124 LNVALDALRA---GSISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLE-IALEGIRSGQTTVQRASAE 199 (229)
Q Consensus 124 k~~AV~~~~~---g~~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~t~e~r~-eaV~~~~~~~~s~~eAA~~ 199 (229)
..++++.+.+ ..+++.++|+.+||+.++|.+..++.|.... .|-...|+ .|.+.+...++++.++|..
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~G~s~~--------~~~~~~Rl~~A~~lL~~~~~si~eIA~~ 80 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEETSYS--------QLLTECRMQRALQLIVIHGFSIKRVAVS 80 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHTTCCHH--------HHHHHHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3444444433 4579999999999999999999987664332 23233344 4555665688999999999
Q ss_pred hCCChHHHHH
Q psy17316 200 YGIPSGTLYG 209 (229)
Q Consensus 200 fgVp~~tv~~ 209 (229)
.|-+-++-..
T Consensus 81 ~Gf~~~s~F~ 90 (120)
T 3mkl_A 81 CGYHSVSYFI 90 (120)
T ss_dssp TTCSCHHHHH
T ss_pred HCCCCHHHHH
Confidence 9987554433
No 78
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=95.30 E-value=0.06 Score=41.72 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=21.8
Q ss_pred CCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 50 MSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 50 ~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
|++.++|+.+||+..||+.|-+..
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~~G 24 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEKG 24 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCC
Confidence 688999999999999999998863
No 79
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.29 E-value=0.018 Score=41.48 Aligned_cols=41 Identities=7% Similarity=0.024 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 36 EDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 36 e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
+....+|+.+..+++|..++|+++||+++++++.+.++.-+
T Consensus 17 ~~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 17 EIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRS 57 (82)
T ss_dssp HHHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34466666666677999999999999999999999986433
No 80
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=95.27 E-value=0.03 Score=40.13 Aligned_cols=38 Identities=11% Similarity=-0.066 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHh
Q psy17316 176 PEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 176 ~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
.-++.-|.+.+...+-|..+||+..||+++|||++++.
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk 77 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 34566677778888888999999999999999999873
No 81
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=95.04 E-value=0.11 Score=40.60 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
.+++.++|+.+||+..||+.|-+. |.-
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye~~-GLl 28 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYERI-GLI 28 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHH-TSS
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC-CCC
Confidence 368999999999999999999888 443
No 82
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.01 E-value=0.029 Score=40.43 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 176 PEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 176 ~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+-+..|++.+..+++++.++|+++|||+++|++.++
T Consensus 16 ~~~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L~ 52 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALY 52 (82)
T ss_dssp HHHHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4568889999888889999999999999999999998
No 83
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=95.01 E-value=0.13 Score=43.68 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=54.9
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHHHh-CCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCCCCCCCHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAHRL-GIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPTKSWNEEILN 125 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~~~-gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~~kYs~e~k~ 125 (229)
+..+|+.++|+.+|+++++|.+..++. |... -..... --+.
T Consensus 17 ~~~~~~~~la~~~~~s~~~l~r~f~~~~g~s~------------~~~~~~--------------------------~Rl~ 58 (292)
T 1d5y_A 17 DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAI------------GAYIRA--------------------------RRLS 58 (292)
T ss_dssp SSSCCCHHHHTTTSSCHHHHHHHHHHHHSSCH------------HHHHHH--------------------------HHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH------------HHHHHH--------------------------HHHH
Confidence 467999999999999999999999975 5431 111001 1246
Q ss_pred HHHHHHHcCCCCHHHHHHHhCCChHH-HHHHHHHh
Q psy17316 126 VALDALRAGSISANKASKAYGIPSST-LYKIARKE 159 (229)
Q Consensus 126 ~AV~~~~~g~~S~~~~a~k~gIp~sT-L~~~ik~~ 159 (229)
.|..++.+.+.|+.+||..+|-+... +.+..++.
T Consensus 59 ~a~~~L~~~~~~i~~ia~~~Gf~~~~~f~r~fk~~ 93 (292)
T 1d5y_A 59 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQ 93 (292)
T ss_dssp HHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67777777778999999999988755 66666543
No 84
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=95.01 E-value=0.057 Score=40.13 Aligned_cols=68 Identities=9% Similarity=0.024 Sum_probs=48.9
Q ss_pred CCHHHHHHHhCCChHHHHHHHHHhCCc-ccCCCCCCCCCCCHHH--HHHHHHHHHhCCCcHHHHHHHhCCCh
Q psy17316 136 ISANKASKAYGIPSSTLYKIARKEGIR-LAQPFNASPTAWKPED--LEIALEGIRSGQTTVQRASAEYGIPS 204 (229)
Q Consensus 136 ~S~~~~a~k~gIp~sTL~~~ik~~g~k-~~~~~~~~~r~~t~e~--r~eaV~~~~~~~~s~~eAA~~fgVp~ 204 (229)
+++.++|+.+|||..||+.|.+ .|.- ......+..|.|+.++ ++..|..+.+-+++..++...+..+.
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~-~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~~~ 73 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDN-IELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHPN 73 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHH-TTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHCTT
T ss_pred ccHHHHHHHHCcCHHHHHHHHH-CCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhCCC
Confidence 5889999999999999999987 4532 2110123456788764 44566667777799999988886653
No 85
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=94.99 E-value=0.025 Score=40.87 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 178 DLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 178 ~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
++.-|.+.+...+.|..+||+.+||+++|||++++
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 46667777777777899999999999999999987
No 86
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=94.97 E-value=0.042 Score=39.48 Aligned_cols=35 Identities=9% Similarity=-0.044 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..+..|+..+ ++.++..++|..+|||.+||++.++
T Consensus 31 ~~r~~Il~~L-~~~~~~~eLa~~l~is~~tv~~~L~ 65 (96)
T 1y0u_A 31 PVRRKILRML-DKGRSEEEIMQTLSLSKKQLDYHLK 65 (96)
T ss_dssp HHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4578899999 8999999999999999999999998
No 87
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=94.95 E-value=0.042 Score=36.77 Aligned_cols=37 Identities=5% Similarity=0.029 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 175 KPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 175 t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..-++.-|.+.+... -|..+||...|||++|+|++++
T Consensus 19 ~~~Er~~I~~aL~~~-gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 19 GFYEAQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SHHHHHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCHHHHHHHhCCCHHHHHHHHH
Confidence 444566677777777 6899999999999999999988
No 88
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=94.95 E-value=0.018 Score=39.25 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=30.4
Q ss_pred CCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCC--CCCCCcHHHHHHHH
Q psy17316 50 MSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEG--PTKSWNEEILNVAL 96 (229)
Q Consensus 50 ~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~--~~k~~s~e~~~~a~ 96 (229)
++..++|+.+||+++||++|++. |........ +..-|..++..+-+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~-G~P~~~~~g~~~~~~y~~~dv~~wl 50 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ-GMPVLRGGGKGNEVLYDSAAVIKWY 50 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT-TCCCSSCCCSSSCCEEEHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC-CCCeEeeCCCcceEEECHHHHHHHH
Confidence 57899999999999999999987 552222222 12246666554433
No 89
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=94.95 E-value=0.062 Score=38.63 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=40.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 26 SLTVTKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 26 ~~~~~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
+-.+-.+|+.+.....|..++. |+++.++|++.||+++||...++.
T Consensus 10 ~~~~~~~~~~~~~~~kLK~il~-GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 10 HMLPPEQWSHTTVRNALKDLLK-DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp CTTTTSCCCHHHHHHHHHHHHT-TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred ccCCHHHhhHHHHHHHHHHHHH-hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 4455678999999999998888 999999999999999999998873
No 90
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=94.90 E-value=0.02 Score=38.93 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=31.0
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNV 94 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~ 94 (229)
-+++.++|..+||+++|||+|++.-.+..|....+..-|..++.++
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g~fP~piklG~~~~w~~~ev~~ 55 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCE 55 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHHHCCCSEESSSCEEEEHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCCCCCCCEEeCCCeEEeHHHHHH
Confidence 3688999999999999999999986554333333222244444433
No 91
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=94.84 E-value=0.06 Score=36.26 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 31 ~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
...|+.+. +++..+ ..|+|..+||..+||+.+|++.++++
T Consensus 10 ~~L~~~e~-~il~~~-~~g~s~~eIA~~l~is~~tV~~~~~~ 49 (74)
T 1fse_A 10 PLLTKRER-EVFELL-VQDKTTKEIASELFISEKTVRNHISN 49 (74)
T ss_dssp CCCCHHHH-HHHHHH-TTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHH-HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45666666 445456 55779999999999999999999886
No 92
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=94.83 E-value=0.046 Score=40.81 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHH
Q psy17316 179 LEIALEGIRSGQTTVQRASAEYGIPSGTLYGRC 211 (229)
Q Consensus 179 r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~v 211 (229)
|..++..+..|+++|+++|..+|||.+||-+.-
T Consensus 47 R~~l~~~L~~ge~TQREIA~~lGiS~stISRi~ 79 (101)
T 1jhg_A 47 RVRIIEELLRGEMSQRELKNELGAGIATITRGS 79 (101)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhhhHHH
Confidence 388888888999999999999999999998873
No 93
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=94.80 E-value=0.09 Score=41.38 Aligned_cols=70 Identities=6% Similarity=0.037 Sum_probs=47.2
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCCCCCCCHHH--HHH
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPTKSWNEEI--LNV 126 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~~kYs~e~--k~~ 126 (229)
.+++.++|+.+|||..||+.|-+. |.-.|..... |....|++++ ++.
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~ye~~-GLl~p~~r~~------------------------------~g~R~Y~~~dl~~l~ 52 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYYDKI-NLLKPSDYTE------------------------------GGHRLYTKDDLYVLQ 52 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHT-TSSCCSEECT------------------------------TSCEEBCHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC-CCCCCCeECC------------------------------CCCEeeCHHHHHHHH
Confidence 579999999999999999999887 4432321111 1123444444 345
Q ss_pred HHHHHHcCCCCHHHHHHHhCCCh
Q psy17316 127 ALDALRAGSISANKASKAYGIPS 149 (229)
Q Consensus 127 AV~~~~~g~~S~~~~a~k~gIp~ 149 (229)
.|..+.+-++|+.+|...+.-..
T Consensus 53 ~I~~lr~~G~sl~~I~~~l~~~~ 75 (146)
T 3hh0_A 53 QIQSFKHLGFSLGEIQNIILQRD 75 (146)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSSE
T ss_pred HHHHHHHcCCCHHHHHHHHHccC
Confidence 56666777789999888776654
No 94
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=94.73 E-value=0.091 Score=40.68 Aligned_cols=65 Identities=9% Similarity=0.103 Sum_probs=46.8
Q ss_pred CCHHHHHHHhCCChHHHHHHHHHhCC-cccCCCCCCCCCCCHHH--HHHHHHHHHhCCCcHHHHHHHhC
Q psy17316 136 ISANKASKAYGIPSSTLYKIARKEGI-RLAQPFNASPTAWKPED--LEIALEGIRSGQTTVQRASAEYG 201 (229)
Q Consensus 136 ~S~~~~a~k~gIp~sTL~~~ik~~g~-k~~~~~~~~~r~~t~e~--r~eaV~~~~~~~~s~~eAA~~fg 201 (229)
+++.++|+.+||+..||+.|.+ .|. .......+..|.|+.++ ++..|..+.+-+++..++...+.
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~-~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~ 68 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEE-KGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVN 68 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH-TTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH-CCCCCCCccCCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4789999999999999999987 343 22111123457788764 55666777777799999988774
No 95
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=94.65 E-value=0.15 Score=39.94 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=48.4
Q ss_pred CCHHHHHHHhCCChHHHHHHHHHhCCccc-CCCCCCCCCCCHH--HHHHHHHHHHhCCCcHHHHHHHhC
Q psy17316 136 ISANKASKAYGIPSSTLYKIARKEGIRLA-QPFNASPTAWKPE--DLEIALEGIRSGQTTVQRASAEYG 201 (229)
Q Consensus 136 ~S~~~~a~k~gIp~sTL~~~ik~~g~k~~-~~~~~~~r~~t~e--~r~eaV~~~~~~~~s~~eAA~~fg 201 (229)
+++.++|+.+||+..||+-|.+. |.-.. ....+..|.|+++ +++..|..+.+-+++..++...+.
T Consensus 3 ~~I~e~A~~~gvs~~tLR~Ye~~-GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 3 LNIKEASEKSGVSADTIRYYERI-GLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLA 70 (142)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHH-TSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHHC-CCCCCCcCCCCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 58999999999999999999885 53222 1112346778766 456778888888899999987665
No 96
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=94.53 E-value=0.059 Score=37.54 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 30 TKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+..|..+++..++. .-|+|+.++|++.||+++||.+|..
T Consensus 6 ~~~~~~~ri~~~l~---~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 6 ARDWHRADVIAGLK---KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp SSSCCHHHHHHHHH---TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred cCCCCHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45778777777764 5689999999999999999998844
No 97
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=94.50 E-value=0.026 Score=40.34 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=24.5
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHhCC
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRLGI 75 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~gi 75 (229)
.++..++|+++||+++||++.+.++.-
T Consensus 27 ~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 699999999999999999999998643
No 98
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=94.44 E-value=0.063 Score=40.05 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 37 DMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 37 ~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
.+..+..+|...|+++.+||+++||++.++.+-+++
T Consensus 22 ~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~ 57 (101)
T 2w7n_A 22 QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHR 57 (101)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 456777788888999999999999999999998875
No 99
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=94.43 E-value=0.062 Score=40.50 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
..++.+..-....+.+ |+|+.+||..+|||.+||+.++++
T Consensus 22 ~L~~~~r~vl~l~y~~-g~s~~EIA~~lgiS~~tV~~~l~r 61 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD-DYSLAEIADEFGVSRQAVYDNIKR 61 (113)
T ss_dssp GSCHHHHHHHHHHHHT-CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4666666444433445 789999999999999999999986
No 100
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=94.43 E-value=0.044 Score=35.75 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 40 AALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 40 ~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
+++..+. .|+|..+||..+||+.+|++.++++
T Consensus 5 ~vl~l~~-~g~s~~eIA~~l~is~~tV~~~~~~ 36 (61)
T 2jpc_A 5 QVLKLID-EGYTNHGISEKLHISIKTVETHRMN 36 (61)
T ss_dssp HHHHHHH-TSCCSHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4555554 4789999999999999999998886
No 101
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=94.42 E-value=0.041 Score=40.39 Aligned_cols=40 Identities=8% Similarity=0.142 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 33 WTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 33 yt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
+..+-...+++.+...++++.++|+.+||+.+||++.+..
T Consensus 4 ~~~~R~~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 4 YIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp THHHHHHHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3444445566666666799999999999999999999863
No 102
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=94.41 E-value=0.11 Score=40.86 Aligned_cols=69 Identities=3% Similarity=-0.047 Sum_probs=51.2
Q ss_pred CCCHHHHHHHhCCChHHHHHHHHHhCCcccC-CCCCCCCCCCHHH--HHHHHHHHHhCCCcHHHHHHHhCCCh
Q psy17316 135 SISANKASKAYGIPSSTLYKIARKEGIRLAQ-PFNASPTAWKPED--LEIALEGIRSGQTTVQRASAEYGIPS 204 (229)
Q Consensus 135 ~~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~-~~~~~~r~~t~e~--r~eaV~~~~~~~~s~~eAA~~fgVp~ 204 (229)
.+++.++|+.+|||.+||+.|-+. |.-... ...+..|.|++++ ++..|..+.+-+++..++...+.-..
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~ye~~-GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~~ 75 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYYDKI-NLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLGFSLGEIQNIILQRD 75 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHT-TSSCCSEECTTSCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSE
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC-CCCCCCeECCCCCEeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Confidence 469999999999999999999885 532211 1123467787764 56667777788899999999887653
No 103
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=94.35 E-value=0.029 Score=39.50 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=28.2
Q ss_pred HHHHHHHH-cC---CCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 39 DAALEALR-AG---QMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 39 ~~AI~~~~-~g---~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
..+++.+. ++ ++|+.++|+++||+++||++.+.++
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44444443 45 6999999999999999999999986
No 104
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=94.32 E-value=0.063 Score=37.44 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
..||+.+ + |+.++|+.+||++.||++|+..
T Consensus 4 ~~ai~~~---G-~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 4 EELVRHF---G-DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHH---S-SHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHH---C-CHHHHHHHHCCCHHHHHHHHhC
Confidence 4566554 2 6999999999999999999986
No 105
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=94.24 E-value=0.0081 Score=49.08 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCCCCCCC-CCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCC
Q psy17316 25 GSLTVTKT-WTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGI 75 (229)
Q Consensus 25 ~~~~~~~k-yt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi 75 (229)
|.+.++.. +++++...+.+.+.+ |+|+.+||+.+||+++|+++|++....
T Consensus 134 G~~~Gr~p~~~~~~v~~i~~l~~~-G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 134 GRIGGRPPKLTKAEWEQAGRLLAQ-GIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp ----------------------------------------------------
T ss_pred CCcCCcCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 33344433 466677777777765 689999999999999999999987543
No 106
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=94.21 E-value=0.054 Score=35.31 Aligned_cols=32 Identities=22% Similarity=0.093 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 180 EIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 180 ~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+|+.++..| +++.++|..+|||..||+.+++
T Consensus 4 ~~vl~l~~~g-~s~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 4 RQVLKLIDEG-YTNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HHHHHHHHTS-CCSHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHhCCCHHHHHHHHH
Confidence 4677775555 9999999999999999999886
No 107
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=94.16 E-value=0.13 Score=40.50 Aligned_cols=67 Identities=7% Similarity=0.034 Sum_probs=43.7
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCCCCCCCHHH--HHH
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPTKSWNEEI--LNV 126 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~~kYs~e~--k~~ 126 (229)
.+++.++|+.+||+..||+.|-+..-+..+... . +....|++++ ++.
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~~Gll~p~~r~-~------------------------------~g~R~Y~~~dl~~l~ 64 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDKQGLFPFLQRN-E------------------------------KGDRIFNEEALKYLE 64 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHTTCCTTCEEC-T------------------------------TCCEEBCHHHHHHHH
T ss_pred ceeHHHHHHHHCcCHHHHHHHHHCCCCCCCcCC-C------------------------------CCCeecCHHHHHHHH
Confidence 478999999999999999999876433222111 1 1123444444 345
Q ss_pred HHHHHHcCCCCHHHHHHHhC
Q psy17316 127 ALDALRAGSISANKASKAYG 146 (229)
Q Consensus 127 AV~~~~~g~~S~~~~a~k~g 146 (229)
.|..+.+-++|+.+|.....
T Consensus 65 ~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 65 MILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp HHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 56666777778888877654
No 108
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.16 E-value=0.069 Score=37.25 Aligned_cols=34 Identities=6% Similarity=-0.122 Sum_probs=29.8
Q ss_pred HHHHHHHHHh-CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRS-GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~-~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
+..|++.+.. +.++..++|..+|||.+||++.++
T Consensus 2 r~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 2 KNEILEFLNRHNGGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4567777765 679999999999999999999998
No 109
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=94.16 E-value=0.044 Score=39.32 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|..|+..+.+|.+++.++|..+|||.+||...++
T Consensus 23 ~~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~ 58 (98)
T 3jth_A 23 ERRLQILCMLHNQELSVGELCAKLQLSQSALSQHLA 58 (98)
T ss_dssp HHHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 458899999988999999999999999999999998
No 110
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.12 E-value=0.073 Score=38.47 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|..|+..+.+|.+++.++|..+|||.+||...++
T Consensus 23 ~~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~ 58 (102)
T 3pqk_A 23 PVRLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLG 58 (102)
T ss_dssp HHHHHHHHHHHTCCBCHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 458999999999999999999999999999999998
No 111
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=94.09 E-value=0.058 Score=36.72 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=28.0
Q ss_pred HHHHHHH-c-CCCCHHHHHHHcCCChhhHHHHHHHhCC
Q psy17316 40 AALEALR-A-GQMSLTKASVSYGIPSTTLWQRAHRLGI 75 (229)
Q Consensus 40 ~AI~~~~-~-g~~S~~~aA~~~gIp~sTL~~~i~~~gi 75 (229)
.+++.+. + +.+|..++|+.+|||++|+++.++.+.-
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444443 3 4699999999999999999999997633
No 112
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=94.01 E-value=0.094 Score=34.84 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 174 ~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.++.++ +|+....-.++++.++|..+|||.+||+.+++
T Consensus 16 L~~~~r-~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ 53 (70)
T 2o8x_A 16 LTTDQR-EALLLTQLLGLSYADAAAVCGCPVGTIRSRVA 53 (70)
T ss_dssp SCHHHH-HHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 445544 56666545559999999999999999999887
No 113
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=93.93 E-value=0.093 Score=37.39 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
..++.+.. +|.++.-.|+|+.+||+.+||+.+||+.++++
T Consensus 37 ~L~~~~r~-vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 37 QLSAEHRA-VIQRSYYRGWSTAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp TSCHHHHH-HHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCHHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34444444 34443345889999999999999999999886
No 114
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=93.91 E-value=0.15 Score=35.82 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHhCC
Q psy17316 125 NVALDALRAGSISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEGIRSGQ 190 (229)
Q Consensus 125 ~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~~~~~~ 190 (229)
.+++.++.+| +|..+||+.+||+..|++.++++.-.++.. ..+.+++.++..++
T Consensus 27 ~~vl~l~~~g-~s~~eIA~~l~is~~tV~~~l~r~~~kL~~-----------~~~~~l~~~a~~~g 80 (82)
T 1je8_A 27 RDILKLIAQG-LPNKMIARRLDITESTVKVHVKHMLKKMKL-----------KSRVEAAVWVHQER 80 (82)
T ss_dssp HHHHHHHTTT-CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC-----------SSHHHHHHHHHHTT
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHcC
Confidence 3556666666 599999999999999999887643222221 11567777766654
No 115
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=93.90 E-value=0.094 Score=35.20 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHH----cCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 33 WTHEDMDAALEALR----AGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 33 yt~e~~~~AI~~~~----~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
.++.+. +++...- ..++|..+||+.+|||.+|+++++++
T Consensus 6 L~~~er-~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~r 48 (68)
T 2p7v_B 6 LTAREA-KVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp CCHHHH-HHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455554 4444443 35899999999999999999999886
No 116
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=93.86 E-value=0.12 Score=35.27 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 180 EIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 180 ~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+|+.++ ..++++.++|..+|||..||+.+++
T Consensus 22 ~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~~~ 53 (79)
T 1x3u_A 22 RQVLSAV-VAGLPNKSIAYDLDISPRTVEVHRA 53 (79)
T ss_dssp HHHHHHH-TTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4666666 5669999999999999999999886
No 117
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=93.81 E-value=0.15 Score=40.11 Aligned_cols=66 Identities=9% Similarity=0.069 Sum_probs=49.0
Q ss_pred CCCHHHHHHHhCCChHHHHHHHHHhCCcc-cCCCCCCCCCCCHH--HHHHHHHHHHhCCCcHHHHHHHhC
Q psy17316 135 SISANKASKAYGIPSSTLYKIARKEGIRL-AQPFNASPTAWKPE--DLEIALEGIRSGQTTVQRASAEYG 201 (229)
Q Consensus 135 ~~S~~~~a~k~gIp~sTL~~~ik~~g~k~-~~~~~~~~r~~t~e--~r~eaV~~~~~~~~s~~eAA~~fg 201 (229)
.+++.++|+.+||+..||+-|.+. |.-. .....+..|.|+++ +++..|..+.+-+++..++...+.
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~~-Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDKQ-GLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHT-TCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ceeHHHHHHHHCcCHHHHHHHHHC-CCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 368999999999999999999873 4321 11112345778766 456777888888899999988876
No 118
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=93.80 E-value=0.12 Score=38.01 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 172 TAWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 172 r~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
...++.++ +|+.++..| +++.|+|..+|||..||+.+++
T Consensus 33 ~~Lt~re~-~Vl~l~~~G-~s~~EIA~~L~iS~~TV~~~l~ 71 (99)
T 1p4w_A 33 KRLSPKES-EVLRLFAEG-FLVTEIAKKLNRSIKTISSQKK 71 (99)
T ss_dssp SSCCHHHH-HHHHHHHHT-CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHH
Confidence 34666666 677887765 9999999999999999999886
No 119
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=93.78 E-value=0.12 Score=34.74 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 173 AWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 173 ~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..++.++ +|+.++ ..++++.++|..+|||.+||+.+++
T Consensus 11 ~L~~~e~-~il~~~-~~g~s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 11 LLTKRER-EVFELL-VQDKTTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp CCCHHHH-HHHHHH-TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHH-HHHHHH-HcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3555444 677776 5558999999999999999999987
No 120
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=93.77 E-value=0.096 Score=37.51 Aligned_cols=35 Identities=14% Similarity=0.018 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 38 MDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 38 ~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
...++..+ +|.+++.++|+.+||+++||++.++.+
T Consensus 33 r~~Il~~L-~~~~~~~eLa~~l~is~~tv~~~L~~L 67 (96)
T 1y0u_A 33 RRKILRML-DKGRSEEEIMQTLSLSKKQLDYHLKVL 67 (96)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34566666 889999999999999999999999875
No 121
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=93.76 E-value=0.079 Score=36.85 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHh---CCCcHHHHHHHh-----CCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRS---GQTTVQRASAEY-----GIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~---~~~s~~eAA~~f-----gVp~~tv~~~vk 212 (229)
..|..|++.+.+ +.++..+++..+ +||.+|||+.++
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 358899999876 469999999999 999999999998
No 122
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=93.74 E-value=0.12 Score=38.87 Aligned_cols=38 Identities=13% Similarity=0.283 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 174 ~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.++.++ +|+....-.++|+.++|..+|||.+||+.++.
T Consensus 23 L~~~~r-~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ 60 (113)
T 1s7o_A 23 LTDKQM-NYIELYYADDYSLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp SCHHHH-HHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 445555 55555544459999999999999999999986
No 123
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=93.67 E-value=0.11 Score=37.89 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|..|+..+.++.+++.++|..+|||.+||...++
T Consensus 26 ~~r~~IL~~L~~~~~~~~ela~~l~is~stvs~~L~ 61 (106)
T 1r1u_A 26 YNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLK 61 (106)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 458899999988999999999999999999999998
No 124
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=93.67 E-value=0.08 Score=38.81 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHh
Q psy17316 176 PEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 176 ~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
.+-+..|++++..++.+..++|..+|||.+||.+.++.
T Consensus 6 ~~R~~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 6 KERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 45566788888888899999999999999999999874
No 125
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=93.65 E-value=0.13 Score=35.05 Aligned_cols=42 Identities=7% Similarity=0.126 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHH-c--CCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 31 KTWTHEDMDAALEALR-A--GQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 31 ~kyt~e~~~~AI~~~~-~--g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
...++.+..-....+. + .++|..+||..+|||.+|+++++.+
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3456666644443442 1 5799999999999999999998875
No 126
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=93.51 E-value=0.052 Score=36.76 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=31.7
Q ss_pred CCHHHHHHHhCCChHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHH
Q psy17316 136 ISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEG 185 (229)
Q Consensus 136 ~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~ 185 (229)
+++.+++..+||+++|+|+|++.-.+..... -+....|..++..+-|+.
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g~fP~pik-lG~~~~w~~~ev~~Wl~~ 59 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSGDLPKAKV-IHGRARWLYRDHCEFKNK 59 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHHHCCCSEE-SSSCEEEEHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCCCCCCEE-eCCCeEEeHHHHHHHHHH
Confidence 6899999999999999999998533222111 122223766555555444
No 127
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=93.48 E-value=0.085 Score=42.18 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH-hhcCCC
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK-LSRSTP 218 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk-~~~~~~ 218 (229)
|-|..|+++++.|..+..++|+..|+||++++..+. +.+.|-
T Consensus 11 erk~~ILE~Lk~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~ 53 (165)
T 2vxz_A 11 VRLRDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGR 53 (165)
T ss_dssp HHHHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhCCcHHHHHHHHHHHHhcCc
Confidence 568899999999999999999999999999999988 776663
No 128
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=93.46 E-value=0.12 Score=36.84 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCC----CcHHHHHHHhCCChHHHHHHHH
Q psy17316 176 PEDLEIALEGIRSGQ----TTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 176 ~e~r~eaV~~~~~~~----~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+...+|++.+.++. +++.++|.++|||+.+|.+.+.
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 344556777776644 8999999999999999999987
No 129
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=93.40 E-value=0.11 Score=36.40 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 173 AWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 173 ~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..++.++ +|+.++ ..++++.++|..+|||..||+.+++
T Consensus 21 ~Lt~~e~-~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 21 QLTPRER-DILKLI-AQGLPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp GSCHHHH-HHHHHH-TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHH-HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3455544 677776 4559999999999999999999887
No 130
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=93.39 E-value=0.42 Score=35.51 Aligned_cols=53 Identities=6% Similarity=0.033 Sum_probs=37.5
Q ss_pred CCcHHHHHHHHHHHhhcchhhhhhhhccCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHH
Q psy17316 86 SWNEEILNVALDALRAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIAR 157 (229)
Q Consensus 86 ~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik 157 (229)
.++++..+.++. ....++ ...+|..+|...+++..+||+++||+++++.+-++
T Consensus 4 rmT~~eFe~~~~------------------~l~~~~-~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~ 56 (101)
T 2w7n_A 4 RLTESQFQEAIQ------------------GLEVGQ-QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVH 56 (101)
T ss_dssp CCCHHHHHHHHT------------------TCCCCH-HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHc------------------cCChHH-HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 467777777762 224544 34555556655556999999999999999888765
No 131
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=93.37 E-value=0.13 Score=37.45 Aligned_cols=36 Identities=6% Similarity=0.029 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..+..|+..+.+|.++..++|..+|||.+||++.++
T Consensus 21 ~~r~~IL~~L~~~~~~~~ela~~l~is~~tv~~~l~ 56 (114)
T 2oqg_A 21 ETRWEILTELGRADQSASSLATRLPVSRQAIAKHLN 56 (114)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 457889998888899999999999999999999998
No 132
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=93.31 E-value=0.19 Score=42.19 Aligned_cols=81 Identities=7% Similarity=0.137 Sum_probs=58.2
Q ss_pred HHHHHHHHHH---cCCCCHHHHHHHhCCChHHHHHHHHHhCCcccCCCCCCCCCC-CHHHHHHHHHHHHhCCCcHHHHHH
Q psy17316 123 ILNVALDALR---AGSISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAW-KPEDLEIALEGIRSGQTTVQRASA 198 (229)
Q Consensus 123 ~k~~AV~~~~---~g~~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~-t~e~r~eaV~~~~~~~~s~~eAA~ 198 (229)
...++++.+. ....|+.++|+.+||+.++|.+..|..|.... .| ..--..+|.+++..+++++.++|.
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~G~t~~--------~~l~~~Rl~~A~~lL~~~~~si~eIA~ 241 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFR--------ELINSIRISYSISLMKTGEFKIKQIAY 241 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHTTTCCHH--------HHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3444444443 34579999999999999999999975454332 23 223456677777788899999999
Q ss_pred HhCCChHHHHHHH
Q psy17316 199 EYGIPSGTLYGRC 211 (229)
Q Consensus 199 ~fgVp~~tv~~~v 211 (229)
..|-+.++-...+
T Consensus 242 ~~Gf~~~s~F~r~ 254 (276)
T 3gbg_A 242 QSGFASVSYFSTV 254 (276)
T ss_dssp HTTCSCHHHHHHH
T ss_pred HhCCCCHHHHHHH
Confidence 9999776655554
No 133
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.28 E-value=0.12 Score=36.85 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 32 TWTHEDMDAALEALR-AGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 32 kyt~e~~~~AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
..+..+....+..+. ++++|+.++|+.+||+++|+++.++.+
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L 60 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKL 60 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345555544444444 788999999999999999999999986
No 134
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=93.27 E-value=0.11 Score=41.19 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
...+++.++|+.+||+..||+.|-+.
T Consensus 9 ~~~~~i~e~A~~~gvs~~TLR~ye~~ 34 (154)
T 2zhg_A 9 KALLTPGEVAKRSGVAVSALHFYESK 34 (154)
T ss_dssp -CCBCHHHHHHHHTSCHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 34689999999999999999999887
No 135
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=93.26 E-value=0.14 Score=41.02 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHh
Q psy17316 170 SPTAWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 170 ~~r~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
++..++++ .|.++..+| +++.++|..+|||.+|||++++.
T Consensus 142 r~~~~~~~---~i~~~~~~G-~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 142 RKRKIDRD---AVLNMWQQG-LGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp SCCCSCHH---HHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCCCCHH---HHHHHHHCC-CCHHHHHHHHCcCHHHHHHHHhh
Confidence 34456653 466666655 89999999999999999999874
No 136
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=93.26 E-value=0.062 Score=37.01 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-++|+.++|+.+||+++||.+|..
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4689999999999999999999986
No 137
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=93.21 E-value=0.13 Score=35.75 Aligned_cols=27 Identities=4% Similarity=-0.122 Sum_probs=24.9
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
+|.+|..++|+.+||+++|+++.+..+
T Consensus 12 ~~~~s~~eLa~~lgvs~~tv~r~L~~L 38 (81)
T 2htj_A 12 HNGGKTAEIAEALAVTDYQARYYLLLL 38 (81)
T ss_dssp SCCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999999999999998875
No 138
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.19 E-value=0.074 Score=37.37 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhC----CCcHHHHHHHhCCChHHHHHHHH
Q psy17316 176 PEDLEIALEGIRSG----QTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 176 ~e~r~eaV~~~~~~----~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
++....|++.+.++ .+++.++|.++|||+.||.+.+.
T Consensus 13 ~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~ 53 (77)
T 1qgp_A 13 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 53 (77)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 44456777777765 48999999999999999999987
No 139
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=93.19 E-value=0.14 Score=37.70 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHh
Q psy17316 178 DLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 178 ~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
++.-|.+.+...+-+..+||...||+++|||++++.
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~LGIsR~TL~rkLkk 94 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMMGINRGTLRKKLKK 94 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 455566667677778999999999999999999873
No 140
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=93.19 E-value=0.13 Score=35.17 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 34 THEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 34 t~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
|+.+. +++..+ -.|+|..+||..+||+.+|++.++++
T Consensus 18 ~~~e~-~vl~l~-~~g~s~~eIA~~l~is~~tV~~~~~r 54 (79)
T 1x3u_A 18 SERER-QVLSAV-VAGLPNKSIAYDLDISPRTVEVHRAN 54 (79)
T ss_dssp CHHHH-HHHHHH-TTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHH-HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34443 445555 56889999999999999999998886
No 141
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=93.13 E-value=0.35 Score=39.57 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 180 EIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 180 ~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+|.+++.+| +++.++|..+|||.+|||++++
T Consensus 166 ~~i~~~~~~G-~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEMLEEG-QAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHh
Confidence 3555666555 8999999999999999999987
No 142
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=93.12 E-value=0.16 Score=35.32 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy17316 124 LNVALDALRAGSISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEGIRSGQTT 192 (229)
Q Consensus 124 k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~~~~~~~s 192 (229)
+.+||+.+ .|+.++|+..||+++++++|+...++ +..+...|+.+-+|...
T Consensus 3 ~~~ai~~~----G~~~~lA~~lGVs~~aVs~W~~g~~i--------------P~~~~~~Ie~~T~G~vk 53 (71)
T 2hin_A 3 PEELVRHF----GDVEKAAVGVGVTPGAVYQWLQAGEI--------------PPLRQSDIEVRTAYKLK 53 (71)
T ss_dssp HHHHHHHH----SSHHHHHHHHTSCHHHHHHHHHHTSC--------------CHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHH----CCHHHHHHHHCCCHHHHHHHHhCCCC--------------CHHHHHHHHHHhCCcch
Confidence 35667776 37999999999999999999975332 24466677777777665
No 143
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=93.04 E-value=0.081 Score=39.54 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH-hhcCC
Q psy17316 176 PEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK-LSRST 217 (229)
Q Consensus 176 ~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk-~~~~~ 217 (229)
...|..|+..+.+|.+++.++|..+|||.+||...++ +.+.|
T Consensus 17 ~~~R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~~~G 59 (118)
T 3f6o_A 17 DPTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLEDSG 59 (118)
T ss_dssp SHHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHHHCC
Confidence 3568999999999999999999999999999999998 44333
No 144
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=93.04 E-value=0.35 Score=40.72 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=44.1
Q ss_pred CCHHHHHHHhCCChHHHHHHHHHhCC-cccCCCCCCCCCCCHH--HHHHHHHHHHhC-CCcHHHHHHHhC
Q psy17316 136 ISANKASKAYGIPSSTLYKIARKEGI-RLAQPFNASPTAWKPE--DLEIALEGIRSG-QTTVQRASAEYG 201 (229)
Q Consensus 136 ~S~~~~a~k~gIp~sTL~~~ik~~g~-k~~~~~~~~~r~~t~e--~r~eaV~~~~~~-~~s~~eAA~~fg 201 (229)
+++.++|+.+||+.+||+-|-+. |. .......+..|.|+++ .++..|..+.+- +++..++...+.
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE~~-GLl~p~~R~~~gyR~Y~~~dl~~L~~I~~lr~~~G~sL~eIk~~l~ 69 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLRE-GLLPPGRQVNATTAEYDEDHLRRLRLVRALIQVGKVPVATAREVLG 69 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH-TSSCCC---------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHC-CCCCCCeeCCCCceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47899999999999999999885 53 2211112345778766 566777788776 899999988664
No 145
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=93.01 E-value=0.32 Score=40.98 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=22.0
Q ss_pred CCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 50 MSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 50 ~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
|++.++|+.+||+..||+.|-+..
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE~~G 24 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLREG 24 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCC
Confidence 688999999999999999998873
No 146
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=93.00 E-value=0.16 Score=42.05 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
.+|.-++-..+..+...|+|+.+||+++||++.+|.++++.-.
T Consensus 7 e~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 7 QHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp SSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 4455556333333455679999999999999999999998743
No 147
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=92.99 E-value=0.22 Score=36.49 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 30 TKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
..+.|+.++ +++..+.+ |+|..+||..+||+.+||+.++.+
T Consensus 32 ~~~Lt~re~-~Vl~l~~~-G~s~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 32 DKRLSPKES-EVLRLFAE-GFLVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp SSSCCHHHH-HHHHHHHH-TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHH-HHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 567888887 44556655 789999999999999999998886
No 148
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=92.94 E-value=0.12 Score=37.25 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 31 ~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
...|+.+. +++..+ ..|+|..+||..+||+.+||+.++++
T Consensus 26 ~~Lt~~e~-~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r 65 (95)
T 3c57_A 26 SGLTDQER-TLLGLL-SEGLTNKQIADRMFLAEKTVKNYVSR 65 (95)
T ss_dssp -CCCHHHH-HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCCHHHH-HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45677666 444456 45789999999999999999998886
No 149
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=92.90 E-value=0.13 Score=38.85 Aligned_cols=93 Identities=8% Similarity=0.049 Sum_probs=59.7
Q ss_pred HHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCCC-CCCCCCCCCcHHHHHHHHHHHhhcchhhhhhhhccCCCCCCCHH
Q psy17316 44 ALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTP-KKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPTKSWNEE 122 (229)
Q Consensus 44 ~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~-~~~~~~k~~s~e~~~~a~~ll~~G~ls~~~~~~~~G~~~kYs~e 122 (229)
.+.....++.++|..+||+..++.+|++..--.|. .......-|.++...++.+.+
T Consensus 15 ~~~~~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l----------------------- 71 (121)
T 2pjp_A 15 LFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMI----------------------- 71 (121)
T ss_dssp GCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHH-----------------------
T ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHH-----------------------
Confidence 44346779999999999999999999887533321 111111123444333333211
Q ss_pred HHHHHHHHH-HcCCCCHHHHHHHhCCChH---HHHHHHHHhCCccc
Q psy17316 123 ILNVALDAL-RAGSISANKASKAYGIPSS---TLYKIARKEGIRLA 164 (229)
Q Consensus 123 ~k~~AV~~~-~~g~~S~~~~a~k~gIp~s---TL~~~ik~~g~k~~ 164 (229)
.+.+ .+|.+++.++-..+|+++. +|-...-+.|+...
T Consensus 72 -----~~~~~~~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR 112 (121)
T 2pjp_A 72 -----RDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRR 112 (121)
T ss_dssp -----HHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred -----HHHHHHCCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEe
Confidence 1111 2577999999999999998 68787777776543
No 150
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=92.89 E-value=0.19 Score=42.61 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=57.0
Q ss_pred HHHHHHHHHc---CCCCHHHHHHHhCCChHHHHHHHHHh-CCcccCCCCCCCCCCCHHH-HHHHHHHHHhCCCcHHHHHH
Q psy17316 124 LNVALDALRA---GSISANKASKAYGIPSSTLYKIARKE-GIRLAQPFNASPTAWKPED-LEIALEGIRSGQTTVQRASA 198 (229)
Q Consensus 124 k~~AV~~~~~---g~~S~~~~a~k~gIp~sTL~~~ik~~-g~k~~~~~~~~~r~~t~e~-r~eaV~~~~~~~~s~~eAA~ 198 (229)
..++++.+.+ ..+|+.++|+.+|++.++|.+..++. |.... .|-... +..|.+++...++++.++|.
T Consensus 5 ~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~g~s~~--------~~~~~~Rl~~a~~~L~~~~~~i~~ia~ 76 (292)
T 1d5y_A 5 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIG--------AYIRARRLSKSAVALRLTARPILDIAL 76 (292)
T ss_dssp HHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSSCHH--------HHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHH--------HHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4455555543 45799999999999999999999876 75443 232333 45566677778899999999
Q ss_pred HhCCChHHHHHH
Q psy17316 199 EYGIPSGTLYGR 210 (229)
Q Consensus 199 ~fgVp~~tv~~~ 210 (229)
.+|-+.++-...
T Consensus 77 ~~Gf~~~~~f~r 88 (292)
T 1d5y_A 77 QYRFDSQQTFTR 88 (292)
T ss_dssp HTTCSCHHHHHH
T ss_pred HcCCCCHHHHHH
Confidence 999776554443
No 151
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=92.86 E-value=0.15 Score=34.22 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHH----hCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 175 KPEDLEIALEGIR----SGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 175 t~e~r~eaV~~~~----~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
++.++ +|+...- ..++++.++|..+|||.+||..++.
T Consensus 7 ~~~er-~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 7 TAREA-KVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp CHHHH-HHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHH-HHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44444 5666555 3569999999999999999999886
No 152
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=92.85 E-value=0.27 Score=32.10 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHh--CCCcHHHHHHHh-----CCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRS--GQTTVQRASAEY-----GIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~--~~~s~~eAA~~f-----gVp~~tv~~~vk 212 (229)
..|..+|..+.. +.++..+++..| +||..|||+.++
T Consensus 4 ~~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 4 GQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 457776665543 568999999999 999999999988
No 153
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=92.85 E-value=0.13 Score=37.41 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 38 MDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 38 ~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
...++..+.+|.+++.++|+.+||+++|+++.++.+.
T Consensus 23 r~~IL~~L~~~~~~~~ela~~l~is~~tv~~~l~~L~ 59 (114)
T 2oqg_A 23 RWEILTELGRADQSASSLATRLPVSRQAIAKHLNALQ 59 (114)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455555678899999999999999999999999863
No 154
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=92.80 E-value=0.14 Score=37.34 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 36 EDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 36 e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
.....++..+.+|.+++.++|+.+||+++||.+.++.+.
T Consensus 26 ~~r~~IL~~L~~~~~~~~ela~~l~is~stvs~~L~~L~ 64 (106)
T 1r1u_A 26 YNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLK 64 (106)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334566666678899999999999999999999999753
No 155
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=92.78 E-value=0.2 Score=37.99 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 31 ~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
++.+.+++..|+++++-.|+|.+++|.+|||+.+-+.+.++++
T Consensus 42 S~IrSekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL 84 (111)
T 3m8j_A 42 SSIHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRL 84 (111)
T ss_dssp SCCCCHHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHH
Confidence 5566789999999999999999999999999999999988874
No 156
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=92.77 E-value=0.19 Score=35.47 Aligned_cols=41 Identities=7% Similarity=0.042 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHH-c--CCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 32 TWTHEDMDAALEALR-A--GQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 32 kyt~e~~~~AI~~~~-~--g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
..++.+..-....+. . .++|+.+||..+|||.+||+.++.+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~r 61 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345555544443342 1 5799999999999999999999886
No 157
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=92.69 E-value=0.16 Score=36.68 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 36 EDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 36 e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
...+.++..+.+|.+++.++|+.+||+++||.+.++.+
T Consensus 23 ~~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L 60 (102)
T 3pqk_A 23 PVRLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVL 60 (102)
T ss_dssp HHHHHHHHHHHTCCBCHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34456777777899999999999999999999999986
No 158
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=92.64 E-value=0.16 Score=34.54 Aligned_cols=37 Identities=14% Similarity=0.019 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.++.+.+..+-+ .-++|+.++|+.+||+.+||.+|-.
T Consensus 10 ~~~g~~lr~~R~---~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 10 TVAPEFIVKVRK---KLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp CCCHHHHHHHHH---HTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred CCCHHHHHHHHH---HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 456666655443 3489999999999999999999966
No 159
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=92.64 E-value=0.083 Score=38.93 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
|..|+..+.++.+++.++|..+|||.+||...++
T Consensus 27 r~~IL~~L~~~~~s~~eLa~~lgis~stvs~~L~ 60 (108)
T 2kko_A 27 RLQILDLLAQGERAVEAIATATGMNLTTASANLQ 60 (108)
T ss_dssp THHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 6788888888999999999999999999999998
No 160
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=92.61 E-value=0.15 Score=35.99 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhC-CCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSG-QTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~-~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..+..|+..+..+ .++..++|..+|||.+||.+.++
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4578889888777 79999999999999999999998
No 161
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=92.61 E-value=0.19 Score=37.83 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|.+|++.+.+| ++|++++..+|||..||-+..+
T Consensus 46 aqR~~Ia~lL~~G-~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 46 SQRFEVAKMLTDK-RTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCccHHHHHHHHH
Confidence 3588999998888 9999999999999999988766
No 162
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.59 E-value=0.21 Score=33.88 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHh----CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 174 WKPEDLEIALEGIRS----GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 174 ~t~e~r~eaV~~~~~----~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.++.++ +|+...-- .++++.++|..+|||.+||+.+..
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 445555 55555443 569999999999999999999876
No 163
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=92.53 E-value=0.2 Score=39.69 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=49.1
Q ss_pred cCCCCHHHHHHHhCCChHHHHHHHHHhCC-cccCCCCCCCCCCCHH--HHHHHHHHHHhCCCcHHHHHHHhCC
Q psy17316 133 AGSISANKASKAYGIPSSTLYKIARKEGI-RLAQPFNASPTAWKPE--DLEIALEGIRSGQTTVQRASAEYGI 202 (229)
Q Consensus 133 ~g~~S~~~~a~k~gIp~sTL~~~ik~~g~-k~~~~~~~~~r~~t~e--~r~eaV~~~~~~~~s~~eAA~~fgV 202 (229)
...+++.++|+.+||+..||+.|.+. |. ...+ ..+..|.|+.+ +++..|..+.+-+++..++...+..
T Consensus 9 ~~~~~i~e~A~~~gvs~~TLR~ye~~-Gll~p~r-~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 79 (154)
T 2zhg_A 9 KALLTPGEVAKRSGVAVSALHFYESK-GLITSIR-NSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGV 79 (154)
T ss_dssp -CCBCHHHHHHHHTSCHHHHHHHHHT-TSSCCEE-CTTSCEEBCTTHHHHHHHHHHHHHHTCCHHHHHHHHCC
T ss_pred ccCCCHHHHHHHHCcCHHHHHHHHHc-CCCCccc-CCCCCEEeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 44579999999999999999999884 53 2211 11335667654 4566677777777999999998875
No 164
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=92.51 E-value=0.14 Score=35.04 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.6
Q ss_pred HHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 42 LEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 42 I~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
|..+.... |+.++|+.+||++++|.+|++.
T Consensus 7 Lk~l~~~~-sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 7 LKKFVEDK-NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp HHHHHTTS-CHHHHHHHSSSCHHHHHHHHHT
T ss_pred HHHHHHHc-CHHHHHHHhCCCHHHHHHHHHh
Confidence 44455655 9999999999999999999985
No 165
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=92.51 E-value=0.2 Score=35.65 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
-.+|+.+..-.++++.+||..+|||.+||+.++.
T Consensus 42 ~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 42 HRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4455666555559999999999999999999876
No 166
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=92.49 E-value=0.23 Score=33.70 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=21.1
Q ss_pred CCHHHHHHHcCCChhhHHHHHHH
Q psy17316 50 MSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 50 ~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
+++.++|+..||+++||.+.+..
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 57899999999999999999983
No 167
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=92.42 E-value=0.17 Score=38.43 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
..++.+..-.+ .+. .|+|+.+||+.+|||.+||+.++++
T Consensus 109 ~L~~~~r~v~~-~~~-~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-RGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp HSCHHHHHHHH-HHT-TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444443333 444 5889999999999999999999886
No 168
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=92.39 E-value=0.22 Score=37.26 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
..++.+.. ++..+.-.|+|+.+||..+|||.+|++.++++
T Consensus 25 ~L~~~~r~-vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~r 64 (113)
T 1xsv_A 25 LLTNKQRN-YLELFYLEDYSLSEIADTFNVSRQAVYDNIRR 64 (113)
T ss_dssp GSCHHHHH-HHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34555543 44444355889999999999999999999886
No 169
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=92.38 E-value=0.19 Score=35.55 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=29.4
Q ss_pred HHHHHHHHHh-CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRS-GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~-~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
+.+|++++.. |..++.+.|.+|+||..||.+-+.
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 4577777765 779999999999999999999876
No 170
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=92.22 E-value=0.2 Score=35.95 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 173 AWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 173 ~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|+.+ .+|+.++..| +++.++|..+|||..||...++
T Consensus 29 ~Lt~rE-~~Vl~l~~~G-~s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 29 VLTPRE-CLILQEVEKG-FTNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp CCCHHH-HHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHH
Confidence 445544 4677777755 9999999999999999999887
No 171
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=92.21 E-value=0.64 Score=37.80 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 30 TKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
+...++-+...++..+.+.|+|..+||+++|+++++|.+.++-.
T Consensus 33 RedL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~LrLl 76 (178)
T 1r71_A 33 RNELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLL 76 (178)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67888999999999888889999999999999999999998854
No 172
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=92.20 E-value=0.38 Score=31.36 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=30.9
Q ss_pred HHHHHHHHHH-H-cCCCCHHHHHHHc-----CCChhhHHHHHHHhCC
Q psy17316 36 EDMDAALEAL-R-AGQMSLTKASVSY-----GIPSTTLWQRAHRLGI 75 (229)
Q Consensus 36 e~~~~AI~~~-~-~g~~S~~~aA~~~-----gIp~sTL~~~i~~~gi 75 (229)
.+....|..+ . ++.+|+.+++..+ +|+.+||++.++..|+
T Consensus 4 ~~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~ 50 (64)
T 2p5k_A 4 GQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHL 50 (64)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 3444444433 2 5679999999999 9999999999997764
No 173
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=92.18 E-value=0.22 Score=38.19 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|.+|++.+.+| ++|+++|..+|||-.||-+-.+
T Consensus 63 s~R~eV~klL~~G-~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 63 SQRLQVAKMIKQG-YTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHHHHHHHHHHT-CCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHH
Confidence 3479999999999 9999999999999999988665
No 174
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=92.14 E-value=0.37 Score=41.15 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHcCCChhhHHHHHHHhCCCCC
Q psy17316 48 GQMSLTKASVSYGIPSTTLWQRAHRLGIHTP 78 (229)
Q Consensus 48 g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~ 78 (229)
+.+++.++|+.+||+..||+.|-+. |+-.|
T Consensus 2 ~~~tI~evA~~~gvs~~TLRyYe~~-GLL~p 31 (249)
T 3qao_A 2 NAMQIKELAELTGVSVRTLHHYDKI-GLLVP 31 (249)
T ss_dssp CCBCHHHHHHHHCCCHHHHHHHHHT-TSSCC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHC-CCCCC
Confidence 4689999999999999999999884 55434
No 175
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=92.13 E-value=0.16 Score=37.99 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH-hhcCC
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK-LSRST 217 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk-~~~~~ 217 (229)
..|..|+..+..|.+++.++|..+|||.+||...++ +...|
T Consensus 21 ~~r~~IL~~L~~~~~~~~eLa~~lgis~stvs~~L~~L~~~G 62 (118)
T 2jsc_A 21 PTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRGCG 62 (118)
T ss_dssp HHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 458899999988999999999999999999999998 44433
No 176
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=92.12 E-value=0.21 Score=37.57 Aligned_cols=41 Identities=10% Similarity=0.048 Sum_probs=34.6
Q ss_pred HHHHHHHHHHH-hCCCcHHHHHHHhCCChHHHHHHHH-hhcCC
Q psy17316 177 EDLEIALEGIR-SGQTTVQRASAEYGIPSGTLYGRCK-LSRST 217 (229)
Q Consensus 177 e~r~eaV~~~~-~~~~s~~eAA~~fgVp~~tv~~~vk-~~~~~ 217 (229)
..|.+|+..+. .+.+++.++|..+|||.+||...++ +...|
T Consensus 42 ~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~G 84 (122)
T 1u2w_A 42 ENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQG 84 (122)
T ss_dssp HHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44788999887 6889999999999999999999998 33333
No 177
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=92.05 E-value=0.1 Score=37.31 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 37 DMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 37 ~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
....++..+.+|.+++.++|+.+||+++|+++.++.+.
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~ 61 (98)
T 3jth_A 24 RRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLR 61 (98)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34566777777899999999999999999999999863
No 178
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=92.05 E-value=0.22 Score=37.62 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|..|+..+.++.+++.++|..+|||.++|...++
T Consensus 46 ~~rl~IL~~L~~~~~s~~ela~~lgis~stvs~~L~ 81 (122)
T 1r1t_A 46 PNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLR 81 (122)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 347889999888889999999999999999999998
No 179
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=91.99 E-value=0.12 Score=37.99 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
..++..+.+|.+++.++|+.+||+++|+.+.++.+
T Consensus 28 ~~IL~~L~~~~~s~~eLa~~lgis~stvs~~L~~L 62 (108)
T 2kko_A 28 LQILDLLAQGERAVEAIATATGMNLTTASANLQAL 62 (108)
T ss_dssp HHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555566789999999999999999999999975
No 180
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=91.97 E-value=0.27 Score=35.40 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 173 AWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 173 ~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..++.++ +|+.++ ..++++.++|..+|||..||+.+++
T Consensus 27 ~Lt~~e~-~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~ 64 (95)
T 3c57_A 27 GLTDQER-TLLGLL-SEGLTNKQIADRMFLAEKTVKNYVS 64 (95)
T ss_dssp CCCHHHH-HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHH-HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3455444 667777 4559999999999999999999886
No 181
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=91.97 E-value=0.31 Score=33.61 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDMDAALEALR-AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~~~AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.++..++-..|..+. ..|+|+.++|+..||++++|.+|..
T Consensus 7 ~~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 7 IYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp BCSHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 345566666666553 5789999999999999999999988
No 182
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=91.95 E-value=0.27 Score=37.67 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
.++++.+.+| +|+++||+++|++.+||.|-.+.
T Consensus 66 ~eV~klL~~G-~syreIA~~~g~S~aTIsRv~r~ 98 (119)
T 3kor_A 66 LQVAKMIKQG-YTYATIEQESGASTATISRVKRS 98 (119)
T ss_dssp HHHHHHHHHT-CCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHHH
Confidence 6777777776 89999999999999999986664
No 183
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=91.92 E-value=0.14 Score=36.48 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 30 TKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
....|+.++. ++..+. .|+|..+||..+||+.+||+.++++
T Consensus 27 l~~Lt~~e~~-vl~l~~-~g~s~~eIA~~l~is~~tV~~~l~r 67 (91)
T 2rnj_A 27 YEMLTEREME-ILLLIA-KGYSNQEIASASHITIKTVKTHVSN 67 (91)
T ss_dssp GGGCCSHHHH-HHHHHH-TTCCTTHHHHHHTCCHHHHHHHHHH
T ss_pred HhcCCHHHHH-HHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3456666653 444564 4789999999999999999999886
No 184
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=91.92 E-value=0.12 Score=34.96 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=21.2
Q ss_pred CcHHHHHHHhCCChHHHHHHHHh
Q psy17316 191 TTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 191 ~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
++..|+|..+|||..|||+|++.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 57899999999999999999984
No 185
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=91.90 E-value=0.15 Score=36.24 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 174 ~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.++.++ +|+.++. .++++.++|..+|||..||+.+++
T Consensus 30 Lt~~e~-~vl~l~~-~g~s~~eIA~~l~is~~tV~~~l~ 66 (91)
T 2rnj_A 30 LTEREM-EILLLIA-KGYSNQEIASASHITIKTVKTHVS 66 (91)
T ss_dssp CCSHHH-HHHHHHH-TTCCTTHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHH-HHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444 5666665 459999999999999999999986
No 186
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=91.87 E-value=0.51 Score=42.00 Aligned_cols=92 Identities=23% Similarity=0.221 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHH---cCCCCHHHHHHHhCCChHHHHHHHHHh-CCcccCCCCCCCCCCCHH-HHHHHHHHHHhCCCcHHH
Q psy17316 121 EEILNVALDALR---AGSISANKASKAYGIPSSTLYKIARKE-GIRLAQPFNASPTAWKPE-DLEIALEGIRSGQTTVQR 195 (229)
Q Consensus 121 ~e~k~~AV~~~~---~g~~S~~~~a~k~gIp~sTL~~~ik~~-g~k~~~~~~~~~r~~t~e-~r~eaV~~~~~~~~s~~e 195 (229)
.....++++.+. ...+++.++|+.+|++.++|.+..+++ |.... .|-.. ....|.+++...++++.+
T Consensus 304 d~~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~~~g~s~~--------~~~~~~r~~~a~~~L~~~~~~i~~ 375 (412)
T 4fe7_A 304 DPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIH--------AMIHAEKLEKARSLLISTTLSINE 375 (412)
T ss_dssp CHHHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHHHHSSCHH--------HHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred cHHHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHH--------HHHHHHHHHHHHHHHhcCCCCHHH
Confidence 445555555553 456899999999999999999999977 75443 23223 345577777788899999
Q ss_pred HHHHhCCChHHHHHHHHhhcCCCCC
Q psy17316 196 ASAEYGIPSGTLYGRCKLSRSTPRP 220 (229)
Q Consensus 196 AA~~fgVp~~tv~~~vk~~~~~~~~ 220 (229)
+|...|-+.++-...+=.+.-|-+|
T Consensus 376 ia~~~Gf~~~~~f~~~Fk~~~g~tP 400 (412)
T 4fe7_A 376 ISQMCGYPSLQYFYSVFKKAYDTTP 400 (412)
T ss_dssp HHHHTTCSCHHHHHHHHHHHSSSCH
T ss_pred HHHHcCCCCHHHHHHHHHHHHCcCH
Confidence 9999999766655544333333333
No 187
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=91.80 E-value=0.28 Score=36.97 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.+++..+.+ |+|+++||+.+|++.+||.|..+.+
T Consensus 49 ~~Ia~lL~~-G~SyreIa~~tG~StaTIsRv~r~L 82 (107)
T 3frw_A 49 FEVAKMLTD-KRTYLDISEKTGASTATISRVNRSL 82 (107)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHCccHHHHHHHHHHH
Confidence 455555555 5899999999999999999876653
No 188
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=91.79 E-value=0.14 Score=36.19 Aligned_cols=43 Identities=5% Similarity=-0.005 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHH-H---cCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 32 TWTHEDMDAALEAL-R---AGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 32 kyt~e~~~~AI~~~-~---~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
+...+++++.|+.. . .+-.|+++||+.+||+.+|+++-+..+.
T Consensus 3 ~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le 49 (77)
T 2jt1_A 3 ESIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLH 49 (77)
T ss_dssp CTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456677777655 1 2567999999999999999999998763
No 189
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=91.74 E-value=0.21 Score=35.25 Aligned_cols=34 Identities=3% Similarity=-0.007 Sum_probs=28.1
Q ss_pred HHHHHHHHHh-------CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRS-------GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~-------~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..+|++++.. +..++.|+|..||||.+||.+.++
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 5566666655 356899999999999999999988
No 190
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=91.71 E-value=0.29 Score=36.57 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=28.3
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHhCCCCC
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRLGIHTP 78 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~ 78 (229)
.+|+.++|++.||+.+||.|-+++.|..|.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kklG~~gf 68 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSLGLKGF 68 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHTTCSSH
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHcCCCCH
Confidence 799999999999999999999999999873
No 191
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=91.69 E-value=0.06 Score=35.86 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=20.3
Q ss_pred CCCHHHHHHHcCCChhhHHHHH
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRA 70 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i 70 (229)
++|+.++|+.+||++++|.+|.
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 3499999999999999999996
No 192
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=91.62 E-value=0.15 Score=33.06 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=23.7
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
...++|+.++|+..||+++||.+|..
T Consensus 11 ~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 11 EKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35689999999999999999999976
No 193
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=91.54 E-value=0.25 Score=37.49 Aligned_cols=35 Identities=3% Similarity=-0.085 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 176 PEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 176 ~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
+.+|.-+ .... .++|+.++|..+|||.+||+.++.
T Consensus 112 ~~~r~v~-~~~~-~g~s~~EIA~~lgis~~tV~~~~~ 146 (164)
T 3mzy_A 112 KFEKEVL-TYLI-RGYSYREIATILSKNLKSIDNTIQ 146 (164)
T ss_dssp HHHHHHH-HHHT-TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHH-HHHH-cCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4455544 4544 559999999999999999999876
No 194
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=91.50 E-value=0.24 Score=35.88 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHh-CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRS-GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~-~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
+.+|++++.. |..++.+.|.+|+||..||.+-+.
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~ 38 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLE 38 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 3567777764 779999999999999999999887
No 195
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=91.47 E-value=0.19 Score=35.40 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=29.2
Q ss_pred HHHHHHHHcC-CCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 39 DAALEALRAG-QMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 39 ~~AI~~~~~g-~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
..++..+.++ .+|+.++|+.+||+++|+.+.++.+
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L 62 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITGLSASATSQHLARM 62 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555555555 7999999999999999999999986
No 196
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=91.46 E-value=0.29 Score=36.61 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
-.+|+.+..-.++|+.++|..+|||.+||+.++.
T Consensus 30 ~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ 63 (113)
T 1xsv_A 30 QRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIR 63 (113)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3456666655669999999999999999999876
No 197
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.45 E-value=0.33 Score=34.42 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHH-hCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 176 PEDLEIALEGIR-SGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 176 ~e~r~eaV~~~~-~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
+..+..++..+. .+.++..++|..+|||.+||++.++
T Consensus 21 ~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~ 58 (109)
T 2d1h_A 21 DTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 333333334444 5779999999999999999999998
No 198
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=91.42 E-value=0.37 Score=31.42 Aligned_cols=35 Identities=3% Similarity=-0.169 Sum_probs=28.9
Q ss_pred HHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhhcC
Q psy17316 182 ALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRS 216 (229)
Q Consensus 182 aV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~~ 216 (229)
+-+.....+++..+.|...|||.++|.+|.++...
T Consensus 6 l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 6 VKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 34455667799999999999999999999887554
No 199
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=91.17 E-value=0.35 Score=34.05 Aligned_cols=37 Identities=8% Similarity=0.115 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHh----CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 175 KPEDLEIALEGIRS----GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 175 t~e~r~eaV~~~~~----~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
++.+| +|+....- .++|+.++|..+|||.+||+.+..
T Consensus 20 ~~~er-~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 20 SPREA-MVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp CHHHH-HHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHH-HHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34444 45555443 569999999999999999999876
No 200
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=91.16 E-value=0.27 Score=36.28 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
+.++..+.++.+|+.++|+.+||+++|+.+.++.+
T Consensus 35 ~~il~~L~~~~~s~~ela~~l~is~stvsr~l~~L 69 (119)
T 2lkp_A 35 LMILTQLRNGPLPVTDLAEAIGMEQSAVSHQLRVL 69 (119)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555678999999999999999999999985
No 201
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=91.14 E-value=0.24 Score=32.63 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=23.5
Q ss_pred HHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 45 LRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 45 ~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
+...+ |+.++|+.+||++++|.+|++.
T Consensus 10 ~~~~g-s~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 10 LEEHG-TQSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp HHHTC-CHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHcC-CHHHHHHHHCcCHHHHHHHHcC
Confidence 34456 9999999999999999999974
No 202
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=91.07 E-value=0.29 Score=34.20 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=29.8
Q ss_pred CCCCCHHHHH--HHHHHH-----HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 30 TKTWTHEDMD--AALEAL-----RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 30 ~~kyt~e~~~--~AI~~~-----~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+..++.+++. ..|..+ ..-|+|+.++|+.+||+++||.+|..
T Consensus 4 ~~~~~~~~~~~~~~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 4 KKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4456666542 222222 45689999999999999999999987
No 203
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=91.06 E-value=0.23 Score=37.05 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 36 EDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 36 e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
.....++..+.+|.+++.++|+.+||+++|+++.++.+.-.|
T Consensus 21 ~~r~~IL~~L~~~~~~~~eLa~~lgis~stvs~~L~~L~~~G 62 (118)
T 2jsc_A 21 PTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRGCG 62 (118)
T ss_dssp HHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 334567777778899999999999999999999999875444
No 204
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=90.98 E-value=0.31 Score=34.93 Aligned_cols=42 Identities=5% Similarity=0.006 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 29 VTKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 29 ~~~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
.....|+.++. ++..+. .|+|..+||..+||+..||+..+++
T Consensus 26 ~~~~Lt~rE~~-Vl~l~~-~G~s~~eIA~~L~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 26 EQDVLTPRECL-ILQEVE-KGFTNQEIADALHLSKRSIEYSLTS 67 (90)
T ss_dssp ---CCCHHHHH-HHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCCCHHHHH-HHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34556776663 555665 5889999999999999999998886
No 205
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=90.96 E-value=0.54 Score=40.06 Aligned_cols=70 Identities=9% Similarity=0.048 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHhCCChHHHHHHHHHhCCc-ccCCCCCCCCCCCHH--HHHHHHHHHHhCCCcHHHHHHHhCCCh
Q psy17316 134 GSISANKASKAYGIPSSTLYKIARKEGIR-LAQPFNASPTAWKPE--DLEIALEGIRSGQTTVQRASAEYGIPS 204 (229)
Q Consensus 134 g~~S~~~~a~k~gIp~sTL~~~ik~~g~k-~~~~~~~~~r~~t~e--~r~eaV~~~~~~~~s~~eAA~~fgVp~ 204 (229)
+.+++.++|+.+|||..||+-|-+ .|.- +.....+..|-|+++ .++..|..+.+-+++..++...+..+.
T Consensus 2 ~~~tI~evA~~~gvs~~TLRyYe~-~GLL~p~~~~~~GyR~Y~~~dl~~L~~I~~lr~~G~sL~eIk~~l~~~~ 74 (249)
T 3qao_A 2 NAMQIKELAELTGVSVRTLHHYDK-IGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPL 74 (249)
T ss_dssp CCBCHHHHHHHHCCCHHHHHHHHH-TTSSCCEECTTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH-CCCCCCceECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHhccCc
Confidence 357999999999999999999988 5532 211012345778766 456677788888899999998887654
No 206
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=90.80 E-value=0.62 Score=31.13 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 179 LEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 179 r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
...+-+.....++|..+.|...|||.++|.+|.++..
T Consensus 9 ~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 9 SEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 3444555666789999999999999999999988654
No 207
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=90.80 E-value=0.15 Score=34.19 Aligned_cols=25 Identities=8% Similarity=-0.118 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..++|+.++|+.+||+++||.+|..
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4589999999999999999999987
No 208
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=90.73 E-value=0.44 Score=37.99 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 29 VTKTWTHEDMDAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 29 ~~~kyt~e~~~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.....++-+. .++..+ .++.+|+.++|+++||+++|++++++++
T Consensus 11 ~~~~ld~~d~-~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L 55 (171)
T 2ia0_A 11 SEIHLDDLDR-NILRLLKKDARLTISELSEQLKKPESTIHFRIKKL 55 (171)
T ss_dssp ---CCCHHHH-HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcCCCCHHHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444444 344444 3678999999999999999999999986
No 209
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=90.71 E-value=0.2 Score=32.75 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=23.6
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
...++|+.++|+..||+++||.+|..
T Consensus 11 ~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 11 IQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35689999999999999999999976
No 210
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=90.70 E-value=0.33 Score=36.59 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=25.2
Q ss_pred HcCC--CCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 46 RAGQ--MSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 46 ~~g~--~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.+++ +|+.++|+.+|++++|+++.+.++
T Consensus 37 ~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L 66 (123)
T 3r0a_A 37 NEPDRWIDTDALSKSLKLDVSTVQRSVKKL 66 (123)
T ss_dssp HSTTCCEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3566 899999999999999999999986
No 211
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=90.64 E-value=0.52 Score=30.82 Aligned_cols=34 Identities=6% Similarity=-0.125 Sum_probs=28.3
Q ss_pred HHHHHhCCCcHHHHHHHhCCChHHHHHHHHhhcC
Q psy17316 183 LEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSRS 216 (229)
Q Consensus 183 V~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~~ 216 (229)
-+.....+++..+.|...|||.++|.+|.++...
T Consensus 9 ~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 9 KKRRIALKMTQTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3445567799999999999999999999987654
No 212
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=90.63 E-value=0.33 Score=33.09 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=29.2
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHH
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDAL 99 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll 99 (229)
.+++.++|+..||+.+||.+++.. .. ..+++.++..++..
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~-----~~------~vs~~t~~rV~~~a 48 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMN-----PD------KVSQATRNRVEKAA 48 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTC-----CC------CSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC-----CC------CCCHHHHHHHHHHH
Confidence 369999999999999999998752 11 23677776665433
No 213
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=90.61 E-value=0.22 Score=35.18 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCC-CCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 36 EDMDAALEALRAGQ-MSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 36 e~~~~AI~~~~~g~-~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
+.+..||..+-+|+ .+...||+++|++++.+.+-+-.+
T Consensus 15 ~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L 53 (75)
T 1sfu_A 15 SLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKL 53 (75)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34466676666777 999999999999999999988765
No 214
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=90.60 E-value=3.1 Score=31.38 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=60.6
Q ss_pred CCCCHHH---HHHHHHHHHcCCCCHHHHHHHhCCChH-HHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy17316 117 KSWNEEI---LNVALDALRAGSISANKASKAYGIPSS-TLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEGIRSGQTT 192 (229)
Q Consensus 117 ~kYs~e~---k~~AV~~~~~g~~S~~~~a~k~gIp~s-TL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~~~~~~~s 192 (229)
.+||+|. +.++|+.+ |. .-..||..++-... ..+.+-.++- .|. .....||+||-..+++++...+.+
T Consensus 12 ~~WT~eED~~L~~~v~~~--G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l----~p~-~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 12 QKFTPEEDEMLKRAVAQH--GS-DWKMIAATFPNRNARQCRDRWKNYL----APS-ISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp CCCCHHHHHHHHHHHHHH--TT-CHHHHHHTCTTCCHHHHHHHHHHHT----STT-SCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCCHHHHHHHHHHHHHh--CC-CHHHHHHHcCCCCHHHHHHHHhhhc----ccc-cccccCCHHHHHHHHHHHHHHCcC
Confidence 4555555 34455554 44 88899988743333 3555444331 111 123579999999999999887788
Q ss_pred HHHHHHHh-CCChHHHHHHHH
Q psy17316 193 VQRASAEY-GIPSGTLYGRCK 212 (229)
Q Consensus 193 ~~eAA~~f-gVp~~tv~~~vk 212 (229)
-..+|..| |-+..++.+++.
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~ 104 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWV 104 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 99999999 899999999887
No 215
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=90.57 E-value=0.4 Score=34.50 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=23.7
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
...|+|+.++|+..||+++||.+|..
T Consensus 11 ~~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 11 KEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35689999999999999999999976
No 216
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.51 E-value=0.18 Score=43.83 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 38 MDAALEALRAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 38 ~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+..+.+.+...+.++.++|+.+||+++|||++++
T Consensus 270 ~~~i~~~l~~~~gn~~~aA~~Lgi~r~tl~~kl~ 303 (304)
T 1ojl_A 270 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3344455555556899999999999999999975
No 217
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=90.48 E-value=0.34 Score=34.08 Aligned_cols=36 Identities=6% Similarity=-0.034 Sum_probs=31.6
Q ss_pred HHHHHHHHHHH-hCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIR-SGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~-~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..+..|+..+. .+.++..++|..+|||.+||+..++
T Consensus 16 ~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~ 52 (100)
T 1ub9_A 16 PVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34778888775 6779999999999999999999998
No 218
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=90.40 E-value=0.28 Score=38.58 Aligned_cols=34 Identities=18% Similarity=0.498 Sum_probs=29.1
Q ss_pred HHHHHHH-cCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 40 AALEALR-AGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 40 ~AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.+++.+. +|.+|..++|+++|++.+|++++++++
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L 41 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4455553 688999999999999999999999986
No 219
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=90.37 E-value=0.38 Score=41.91 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 36 EDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 36 e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
+.+..+...+..+++++.++|+++||++.|++|-+...
T Consensus 8 ~~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l 45 (315)
T 2w48_A 8 RLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRG 45 (315)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34466777888999999999999999999999988864
No 220
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=90.36 E-value=0.22 Score=33.25 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=23.7
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
...++|+.++|+..||+++||.+|..
T Consensus 20 ~~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35689999999999999999999976
No 221
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=90.36 E-value=0.38 Score=34.70 Aligned_cols=36 Identities=8% Similarity=-0.023 Sum_probs=31.6
Q ss_pred HHHHHHHHH-HHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEG-IRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~-~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|.+|+.. +..|.+++.++|..+|+|.+||...++
T Consensus 27 ~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~ 63 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLC 63 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 468899954 456889999999999999999999998
No 222
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=90.34 E-value=0.55 Score=32.28 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
-..|..+.... |+.++|+..||+++||.+|-.
T Consensus 18 g~~l~~~R~~~-sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 18 GELLRSARGDM-SMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHTTS-CHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHC-CHHHHHHHhCCCHHHHHHHHc
Confidence 45677777766 999999999999999999976
No 223
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=90.30 E-value=0.23 Score=32.67 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=23.6
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..-++|+.++|+..||+++||.+|..
T Consensus 13 ~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 13 IALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 35689999999999999999999976
No 224
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=90.28 E-value=0.37 Score=36.32 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=29.4
Q ss_pred HHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 40 AALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 40 ~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.++..+.+|.+++.++|+.+||+++|+.+.++.+
T Consensus 50 ~IL~~L~~~~~s~~ela~~lgis~stvs~~L~~L 83 (122)
T 1r1t_A 50 RLLSLLARSELCVGDLAQAIGVSESAVSHQLRSL 83 (122)
T ss_dssp HHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555566788999999999999999999999986
No 225
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=90.22 E-value=0.66 Score=34.07 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=24.5
Q ss_pred HHcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 45 LRAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 45 ~~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
...-|+|+.++|+.+||+++||.+|..
T Consensus 23 r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 23 GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 356789999999999999999999986
No 226
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=90.16 E-value=0.32 Score=35.42 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHH-HcC-CCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 39 DAALEAL-RAG-QMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 39 ~~AI~~~-~~g-~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
+.++..+ ..| .+|..++|+.+||+++|+++.++.+
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L 57 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLL 57 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555544 466 7999999999999999999999875
No 227
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=90.15 E-value=0.16 Score=34.70 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=24.5
Q ss_pred HHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 42 LEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 42 I~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
|..+.... |+.++|+++||+.++|.+|++.
T Consensus 7 L~~~~~~~-s~t~aA~~L~vtQ~AVS~~ir~ 36 (66)
T 2ovg_A 7 LKDYAMRF-GQTKTAKDLGVYPSSINQAIHA 36 (66)
T ss_dssp HHHHHHHH-CHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHC-CHHHHHHHhCCCHHHHHHHHHh
Confidence 33344444 9999999999999999999985
No 228
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=90.08 E-value=0.39 Score=35.09 Aligned_cols=25 Identities=4% Similarity=-0.052 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-|+|+.++|+..||+++||.+|-+
T Consensus 20 ~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 20 EHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3589999999999999999999988
No 229
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=90.07 E-value=0.32 Score=36.47 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=29.9
Q ss_pred HHHHHHHH-cCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 39 DAALEALR-AGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 39 ~~AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
+.++..+. +|.+++.++|+.+||+++|+.+.++.+
T Consensus 45 l~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L 80 (122)
T 1u2w_A 45 AKITYALCQDEELCVCDIANILGVTIANASHHLRTL 80 (122)
T ss_dssp HHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35555555 688999999999999999999999985
No 230
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=90.00 E-value=0.37 Score=31.66 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=26.3
Q ss_pred HHHHHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 183 LEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 183 V~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
...+...+ ++.++|..+|||.++|..|+++.+
T Consensus 7 ~~~~~~~g-s~~~~A~~lgis~~~vs~~~~~~~ 38 (67)
T 2pij_A 7 SKYLEEHG-TQSALAAALGVNQSAISQMVRAGR 38 (67)
T ss_dssp HHHHHHTC-CHHHHHHHHTSCHHHHHHHHHTTC
T ss_pred HHHHHHcC-CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 34556666 999999999999999999998543
No 231
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=89.97 E-value=0.48 Score=34.88 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..+..|+..+.++.+++.++|..+|||.+||.+.++
T Consensus 32 ~~~~~il~~L~~~~~s~~ela~~l~is~stvsr~l~ 67 (119)
T 2lkp_A 32 PSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSHQLR 67 (119)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 347788888888789999999999999999999998
No 232
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=89.95 E-value=0.63 Score=32.79 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=25.8
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.++.+|+.++|+.+||+++|+++.++++
T Consensus 31 ~~~~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 31 ERGGMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp HHCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3688999999999999999999999985
No 233
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.93 E-value=0.3 Score=42.34 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 176 PEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 176 ~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.-++..|.+.+...+.|..+||+..|||++|||++++
T Consensus 267 ~~e~~~i~~~l~~~~gn~~~aA~~Lgi~r~tl~~kl~ 303 (304)
T 1ojl_A 267 DVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp HHHHHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3467777888888888999999999999999999875
No 234
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=89.92 E-value=0.48 Score=33.13 Aligned_cols=34 Identities=0% Similarity=0.003 Sum_probs=27.3
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 38 MDAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 38 ~~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+-..|..+ ..-++|+.++|+..||+++||.+|..
T Consensus 14 ~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 14 VGKVIQQGRQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44444433 45689999999999999999999987
No 235
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=89.87 E-value=0.58 Score=32.96 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.3
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
+|.+|+.++|+.|||+..||++=+...
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~L 40 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQL 40 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 689999999999999999999877654
No 236
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=89.85 E-value=0.23 Score=36.99 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 36 EDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 36 e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
...+.++..+.+|.+++.++|+.+||+++|+.+.++.+.
T Consensus 18 ~~R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~ 56 (118)
T 3f6o_A 18 PTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLE 56 (118)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 345667777778999999999999999999999999863
No 237
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=89.77 E-value=1.2 Score=33.03 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDMDAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
....+-..|..+ ..-|+|+.++|+..||++++|.+|-.
T Consensus 9 ~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 9 DFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp CTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 334454555544 35789999999999999999999987
No 238
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=89.72 E-value=0.43 Score=31.97 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=26.9
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 38 MDAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 38 ~~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+...|..+ ...|+|+.++|+..||+++||.+|..
T Consensus 8 ~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 8 VSEHLMELITQQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 33444433 45689999999999999999999976
No 239
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=89.71 E-value=0.4 Score=32.48 Aligned_cols=53 Identities=8% Similarity=0.120 Sum_probs=35.2
Q ss_pred CCHHHHHHHhCCChHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHhCCCcHHHHH
Q psy17316 136 ISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEGIRSGQTTVQRAS 197 (229)
Q Consensus 136 ~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~~~~~~~s~~eAA 197 (229)
+++.++|+..||+.+|+.+++...... ...+++-+..|.+.+.+-+...+..|
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~---------~~vs~et~~rI~~aa~~lgY~pn~~a 53 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQ---------YRVSDKTVEKVMAVVREHNYHPNAVA 53 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTT---------TTCTTHHHHHHHHHHHHHTCCCC---
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCC---------CCCCHHHHHHHHHHHHHhCCCccHHH
Confidence 478999999999999999988732100 13556777777777666545444443
No 240
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=89.68 E-value=0.5 Score=30.37 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=27.1
Q ss_pred HHHHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 184 EGIRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 184 ~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
+.....++|..+.|...|||.++|.+|.++..
T Consensus 8 ~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 8 LIREKKKISQSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 34556779999999999999999999998653
No 241
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=89.68 E-value=0.31 Score=35.13 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=32.0
Q ss_pred HHHHHHH-HHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 37 DMDAALE-ALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 37 ~~~~AI~-~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
..+.++. .+.+|.+++.++|+.+||+++|+.+.++...-.
T Consensus 28 ~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 28 MRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp HHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3455663 445788999999999999999999999986543
No 242
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=89.61 E-value=0.37 Score=33.35 Aligned_cols=38 Identities=18% Similarity=0.415 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 172 TAWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 172 r~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|..+...+ .+...++|..+.|.+.|||.+||.+|.+
T Consensus 7 ~~~~~~ri~~---~l~~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 7 RDWHRADVIA---GLKKRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp SSCCHHHHHH---HHHTTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred CCCCHHHHHH---HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4676554444 4446679999999999999999998865
No 243
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=89.59 E-value=0.22 Score=39.18 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH-hhcCC
Q psy17316 176 PEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK-LSRST 217 (229)
Q Consensus 176 ~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk-~~~~~ 217 (229)
..-|..|+..+..+.+++.++|..+|||.+||...++ +.+.|
T Consensus 57 ~p~R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~~aG 99 (151)
T 3f6v_A 57 EPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEAG 99 (151)
T ss_dssp SHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3569999999999999999999999999999999998 44433
No 244
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=89.52 E-value=0.44 Score=36.03 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=27.7
Q ss_pred HHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 41 ALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 41 AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
++..+ .+|.+|..++|+.+||+++|+++.++++
T Consensus 9 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L 42 (141)
T 1i1g_A 9 ILEILEKDARTPFTEIAKKLGISETAVRKRVKAL 42 (141)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444 3678999999999999999999999975
No 245
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=89.51 E-value=0.69 Score=32.58 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=29.4
Q ss_pred HHHHHHHHH-hCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIR-SGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~-~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
...|+..+. .+.++..++|..+|||.+||++.++
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~ 56 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 556677665 4789999999999999999999998
No 246
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=89.47 E-value=6.3 Score=30.72 Aligned_cols=144 Identities=10% Similarity=0.066 Sum_probs=61.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHc-CCChhhHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHHHhhcchhh
Q psy17316 29 VTKTWTHEDMDAALEALRAGQ-MSLTKASVSY-GIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEILNVALDALRAGSISA 106 (229)
Q Consensus 29 ~~~kyt~e~~~~AI~~~~~g~-~S~~~aA~~~-gIp~sTL~~~i~~~gi~~~~~~~~~k~~s~e~~~~a~~ll~~G~ls~ 106 (229)
.+.+||+|+-...+++|...| ..-..||..+ |=+....+.+...+- .+.....++++|+-..
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l----~p~~~~~~Wt~eEd~~------------ 68 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL----NPELIKGPWTKEEDQR------------ 68 (159)
T ss_dssp --------------------------------------CHHHHHHTTT----CTTCCCSCCCHHHHHH------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHcc----CCCcCCCCCChHHHHH------------
Confidence 467899888776666665433 3567778776 333333443333221 1111112344443322
Q ss_pred hhhhhccCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChH-HHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHH
Q psy17316 107 NKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSS-TLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEG 185 (229)
Q Consensus 107 ~~~~~~~G~~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~s-TL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~ 185 (229)
+.++|+.+ |...-..||..+.-... .++.+-..+ ..|. .....||+||-..+++.
T Consensus 69 -----------------L~~~v~~~--g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~----l~p~-~~~~~WT~eEd~~L~~~ 124 (159)
T 1h89_C 69 -----------------VIKLVQKY--GPKRWSVIAKHLKGRIGKQCRERWHNH----LNPE-VKKTSWTEEEDRIIYQA 124 (159)
T ss_dssp -----------------HHHHHHHH--CSCCHHHHHHTSTTCCHHHHHHHHHHT----TCTT-SCCSCCCHHHHHHHHHH
T ss_pred -----------------HHHHHHHh--CcccHHHHHHHcCCCCHHHHHHHHHHH----hCcc-ccccCCChHHHHHHHHH
Confidence 23344443 33357778877632222 244443332 1121 23467999999999999
Q ss_pred HHhCCCcHHHHHHHh-CCChHHHHHHHH
Q psy17316 186 IRSGQTTVQRASAEY-GIPSGTLYGRCK 212 (229)
Q Consensus 186 ~~~~~~s~~eAA~~f-gVp~~tv~~~vk 212 (229)
+...+..-.++|..| |-+-.+|.+.++
T Consensus 125 ~~~~g~~W~~Ia~~l~gRt~~~~knr~~ 152 (159)
T 1h89_C 125 HKRLGNRWAEIAKLLPGRTDNAIKNHWN 152 (159)
T ss_dssp HHHHCSCHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 988778899999988 888888888876
No 247
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=89.43 E-value=0.45 Score=35.98 Aligned_cols=43 Identities=9% Similarity=0.127 Sum_probs=32.9
Q ss_pred HHHHHHHHHHH--HcCCCCHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 35 HEDMDAALEAL--RAGQMSLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 35 ~e~~~~AI~~~--~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
.++.+.+|-.+ ..+++++.++|+.+||+++|+.+.++++.-.|
T Consensus 6 ~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~G 50 (142)
T 1on2_A 6 MEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDE 50 (142)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 34455555544 35889999999999999999999999864333
No 248
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=89.41 E-value=0.17 Score=42.84 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH-hhcCCCC
Q psy17316 181 IALEGIRSGQTTVQRASAEYGIPSGTLYGRCK-LSRSTPR 219 (229)
Q Consensus 181 eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk-~~~~~~~ 219 (229)
.++-.+.+|.++..++|..+|+|.++|...++ +...|+-
T Consensus 169 ~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v 208 (232)
T 2qlz_A 169 ILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPV 208 (232)
T ss_dssp HHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCe
Confidence 34445556889999999999999999999988 6666654
No 249
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=89.41 E-value=0.71 Score=31.85 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 179 LEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 179 r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
...+-+.....+++..+.|...||+.++|.+|.++..
T Consensus 20 ~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 20 LIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 3445555666789999999999999999999998654
No 250
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=89.34 E-value=0.4 Score=33.17 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 40 AALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 40 ~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|+.+ ...++|+.++|+.+||+++||.+|..
T Consensus 21 ~~l~~~r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 21 IVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344433 45789999999999999999999987
No 251
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=89.31 E-value=0.76 Score=35.29 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=28.2
Q ss_pred HHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 40 AALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 40 ~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.++..+ .++.+|..++|+.+|++++|++++++++
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 47 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARRIDKL 47 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444 3688999999999999999999999985
No 252
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=89.26 E-value=0.33 Score=31.45 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-++|+.++|+..||+++||.+|..
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4479999999999999999999976
No 253
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=89.25 E-value=0.42 Score=36.01 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=23.3
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-++|+.++|+.+||+++||.+|-.
T Consensus 82 ~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 82 KLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 4589999999999999999999977
No 254
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=89.21 E-value=0.46 Score=38.27 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHh-CC-CcHHHHHHHhCCChHHHHHHHH-hhcCC
Q psy17316 177 EDLEIALEGIRS-GQ-TTVQRASAEYGIPSGTLYGRCK-LSRST 217 (229)
Q Consensus 177 e~r~eaV~~~~~-~~-~s~~eAA~~fgVp~~tv~~~vk-~~~~~ 217 (229)
+.+.+|++.+.+ ++ ++..+.|.+||||..||++.++ +...|
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G 64 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLG 64 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456778888875 34 9999999999999999999998 44444
No 255
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=89.19 E-value=0.22 Score=40.36 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhC-CChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYG-IPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fg-Vp~~tv~~~vk 212 (229)
.-|..||+.+..|.+++.++|..++ +|.+||+.+++
T Consensus 23 P~Rl~il~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~ 59 (182)
T 4g6q_A 23 PLRWRITQLLIGRSLTTRELAELLPDVATTTLYRQVG 59 (182)
T ss_dssp HHHHHHHHHTTTSCEEHHHHHHHCTTBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 4699999999999999999999996 99999999988
No 256
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=89.18 E-value=0.58 Score=36.71 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=25.6
Q ss_pred HHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 42 LEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 42 I~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
+.+..-.|+|+.+||..+|||.+||+.++.+
T Consensus 149 l~l~~~~g~s~~EIA~~lgis~~tV~~~l~r 179 (194)
T 1or7_A 149 ITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 179 (194)
T ss_dssp HHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3333345889999999999999999999886
No 257
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=89.00 E-value=0.35 Score=35.25 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=31.0
Q ss_pred HHHHHHHHHH-hC-CCcHHHHHHHhCCChHHHHHHHH
Q psy17316 178 DLEIALEGIR-SG-QTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 178 ~r~eaV~~~~-~~-~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+.+|+..+. .| .++..++|..||||.++|+..++
T Consensus 19 ~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~ 55 (110)
T 1q1h_A 19 DVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLN 55 (110)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4778888874 56 79999999999999999999998
No 258
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=88.99 E-value=0.49 Score=31.23 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=26.0
Q ss_pred HHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 40 AALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 40 ~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|..+ ...|+|+.++|+..||++++|.+|..
T Consensus 16 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 16 QRLRELRTAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 334433 35789999999999999999999976
No 259
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=88.95 E-value=0.26 Score=36.74 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 48 GQMSLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 48 g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
..+|+.++|++.||+.+||.|-+++.|..|
T Consensus 34 ~~~si~elA~~~~vS~aTv~Rf~kkLGf~g 63 (107)
T 3iwf_A 34 VNMTSQEIANQLETSSTSIIRLSKKVTPGG 63 (107)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHSTTH
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHHHhCCCC
Confidence 479999999999999999999999999886
No 260
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=88.94 E-value=0.5 Score=36.35 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=28.3
Q ss_pred HHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 40 AALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 40 ~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.++..+ .+|.+|+.++|+.+|++++|++++++++
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444 3688999999999999999999999986
No 261
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=88.87 E-value=0.86 Score=35.53 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 33 WTHEDMDAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 33 yt~e~~~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.++-+. ..++.+ .++.+|+.++|+.+|++++|++++++++
T Consensus 8 ld~~~~-~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 8 LDKTDI-KILQVLQENGRLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp CCHHHH-HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344333 444444 3688999999999999999999999986
No 262
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=88.80 E-value=0.47 Score=36.27 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=30.2
Q ss_pred CCCCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 30 TKTWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 30 ~~kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
++.-+.+.++ .|++.+.+. +.|+++||++.||+++|||+...
T Consensus 6 ~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 51 (195)
T 3ppb_A 6 SKRTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFP 51 (195)
T ss_dssp --CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred chhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 4445666664 445555553 58999999999999999998744
No 263
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=88.75 E-value=0.57 Score=37.74 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=29.9
Q ss_pred HHHHHHHHHHc-CC-CCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 37 DMDAALEALRA-GQ-MSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 37 ~~~~AI~~~~~-g~-~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.....++.+.+ ++ +|..++|+++||+++|+++.++..
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L 60 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYL 60 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34566666663 44 999999999999999999999864
No 264
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=88.70 E-value=1.8 Score=31.46 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHHHHHHH---cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 37 DMDAALEALR---AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 37 ~~~~AI~~~~---~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+-..|..++ .-++|+.++|+.+||+++||.+|..
T Consensus 34 ~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 34 EVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp HHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4455566554 4689999999999999999999965
No 265
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=88.64 E-value=0.53 Score=31.40 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=26.1
Q ss_pred HHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 40 AALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 40 ~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|..+ ..-|+|+.++|+..||++++|.+|..
T Consensus 13 ~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 13 RTLKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 344433 35689999999999999999999976
No 266
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=88.56 E-value=0.9 Score=34.75 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=28.4
Q ss_pred HHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 40 AALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 40 ~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
..++.+ .++.+|+.++|+++||+++|++++++++
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444 3678999999999999999999999986
No 267
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=88.54 E-value=1 Score=34.68 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=28.5
Q ss_pred HHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 40 AALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 40 ~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
..++.+ .+|.+|+.++|+++|++++|++++++++
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 444444 3688999999999999999999999986
No 268
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=88.47 E-value=0.48 Score=33.89 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=23.9
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+-++|+.++|+..||+++||.+|..
T Consensus 34 ~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 34 IDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45699999999999999999999987
No 269
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=88.42 E-value=0.4 Score=31.87 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..++|+.++|+..||++++|.+|..
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4589999999999999999999976
No 270
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=88.39 E-value=0.6 Score=38.10 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
+.+..|+..+.+|.+++.++|..+|||.+||++.++
T Consensus 20 ~~~~~IL~~L~~~~~s~~eLA~~lglS~stv~~~l~ 55 (192)
T 1uly_A 20 DTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIE 55 (192)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 446788888888999999999999999999999998
No 271
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=88.37 E-value=0.38 Score=38.07 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=29.9
Q ss_pred CCCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 31 KTWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 31 ~kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.-+.+.++ .|++.+.+. +.|+++||++.||+++|||+...
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~F~ 70 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFP 70 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCS
T ss_pred cHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHhCC
Confidence 444556664 455555553 58999999999999999998754
No 272
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=88.30 E-value=0.69 Score=31.84 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=29.9
Q ss_pred HHHHHHHHHHc---CCCCHHHHHHHc-----CCChhhHHHHHHHh
Q psy17316 37 DMDAALEALRA---GQMSLTKASVSY-----GIPSTTLWQRAHRL 73 (229)
Q Consensus 37 ~~~~AI~~~~~---g~~S~~~aA~~~-----gIp~sTL~~~i~~~ 73 (229)
....+++.+.+ +.+|+.+++..+ +|+.+|||+-+..+
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L 62 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 44556665543 579999999999 99999999998875
No 273
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=88.29 E-value=0.63 Score=35.67 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=29.1
Q ss_pred HHHHHHH-cCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 40 AALEALR-AGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 40 ~AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
.++..+. ++.+|..++|+.+||+++|++++++++.
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~ 42 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLE 42 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4555554 5779999999999999999999999863
No 274
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=88.24 E-value=0.38 Score=33.84 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=28.9
Q ss_pred HHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 39 DAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 39 ~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
..++..+ .++.+|+.++|+.+||+++||++.++++
T Consensus 19 ~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L 54 (100)
T 1ub9_A 19 LGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVL 54 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444 3688999999999999999999999986
No 275
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=88.21 E-value=0.66 Score=35.52 Aligned_cols=35 Identities=23% Similarity=0.147 Sum_probs=30.4
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 178 DLEIALEGIRS-GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 178 ~r~eaV~~~~~-~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+.+|++.+.. +.+++.++|..+|||.+||.+.++
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~ 39 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIK 39 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45678887764 569999999999999999999998
No 276
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=88.21 E-value=0.76 Score=34.46 Aligned_cols=42 Identities=5% Similarity=0.108 Sum_probs=32.0
Q ss_pred HHHHHHHHHHH--cCCCCHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 36 EDMDAALEALR--AGQMSLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 36 e~~~~AI~~~~--~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
.+.+.+|..+. ++.+|+.++|+.+||+++|+.+.++++.-.|
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~G 59 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKG 59 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCC
Confidence 34455655442 4688999999999999999999999864333
No 277
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=88.21 E-value=0.9 Score=30.85 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=24.5
Q ss_pred HHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 184 EGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 184 ~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
+.+.+.. ++.++|+.+||+.++|..|++..
T Consensus 8 k~l~~~~-sq~~~A~~Lgvsq~aVS~~~~~~ 37 (65)
T 2cw1_A 8 KKFVEDK-NQEYAARALGLSQKLIEEVLKRG 37 (65)
T ss_dssp HHHHTTS-CHHHHHHHSSSCHHHHHHHHHTT
T ss_pred HHHHHHc-CHHHHHHHhCCCHHHHHHHHHhc
Confidence 3345554 99999999999999999999743
No 278
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=88.12 E-value=0.49 Score=34.18 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=26.2
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
.|.+|+.++|+.|||+..||++=+..+.-.
T Consensus 14 ~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~ 43 (87)
T 2k02_A 14 QGRMEAKQLSARLQTPQPLIDAMLERMEAM 43 (87)
T ss_dssp SCSEEHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 689999999999999999999988875433
No 279
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=88.06 E-value=0.64 Score=34.43 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=31.3
Q ss_pred HHHH-HHHHHHHcCCC-------CHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 36 EDMD-AALEALRAGQM-------SLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 36 e~~~-~AI~~~~~g~~-------S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
+++. ...+.|.+|.+ |.+++|++|||+++|+++-+..+.-.|
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~G 61 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDN 61 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4444 33446667665 899999999999999999888764443
No 280
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=88.01 E-value=0.65 Score=38.50 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=32.8
Q ss_pred CCCCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 30 TKTWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 30 ~~kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+...+.+.++ .|++.+.+. ++|+++||++.||+++|||+...
T Consensus 3 r~~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~ 48 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVG 48 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHHHcC
Confidence 4566778774 555555543 58999999999999999999866
No 281
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=87.98 E-value=0.75 Score=30.54 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=27.5
Q ss_pred HHHHHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 183 LEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 183 V~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
-+.....+++..+.|...|||.++|.+|.++.+
T Consensus 16 ~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 16 KVVLAEKQRTNRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 344556779999999999999999999998654
No 282
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=87.95 E-value=0.94 Score=36.06 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 32 TWTHEDMDAALEALR-AGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 32 kyt~e~~~~AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
..++.+. .+|+.+. ++.+|+.++|+++|++.+|++++++++.
T Consensus 24 ~ld~~d~-~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~ 66 (171)
T 2e1c_A 24 PLDEIDK-KIIKILQNDGKAPLREISKITGLAESTIHERIRKLR 66 (171)
T ss_dssp CCCHHHH-HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3444443 4455443 6889999999999999999999999863
No 283
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=87.93 E-value=0.38 Score=34.03 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=27.4
Q ss_pred HHHHHHHHH-cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 38 MDAALEALR-AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 38 ~~~AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+-..|+.++ ..++|+.++|+.+||+++||.+|..
T Consensus 10 ~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 10 FSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 344455444 5689999999999999999999976
No 284
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=87.93 E-value=0.5 Score=38.61 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
..++..+.+|.+|+.++|+.+||+++|+++.++++
T Consensus 23 ~~IL~~L~~~~~s~~eLA~~lglS~stv~~~l~~L 57 (192)
T 1uly_A 23 RKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKL 57 (192)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555666899999999999999999999999985
No 285
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=87.89 E-value=0.66 Score=29.96 Aligned_cols=32 Identities=3% Similarity=-0.088 Sum_probs=26.6
Q ss_pred HHHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 183 LEGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 183 V~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
-+.....+++..+.|...|||.++|.+|.++.
T Consensus 11 ~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~ 42 (68)
T 2r1j_L 11 RARRKKLKIRQAALGKMVGVSNVAISQWERSE 42 (68)
T ss_dssp HHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 34445566999999999999999999998864
No 286
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=87.82 E-value=1 Score=34.67 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=28.5
Q ss_pred HHHHHHH-cCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 40 AALEALR-AGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 40 ~AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
..++.+. +|.+|+.++|+++|++++|++++++++
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 46 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHVRVEKM 46 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4444443 578999999999999999999999985
No 287
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=87.76 E-value=0.67 Score=36.16 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=29.8
Q ss_pred CCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-+.+.++ .|++.+.+. +.|+.+||++.||+++|||++..
T Consensus 30 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 73 (218)
T 3dcf_A 30 NDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFK 73 (218)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 34556664 555555543 48999999999999999998754
No 288
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=87.74 E-value=0.82 Score=34.30 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHh-CCCcHHHHHHHh--CCChHHHHHHHH
Q psy17316 173 AWKPEDLEIALEGIRS-GQTTVQRASAEY--GIPSGTLYGRCK 212 (229)
Q Consensus 173 ~~t~e~r~eaV~~~~~-~~~s~~eAA~~f--gVp~~tv~~~vk 212 (229)
.|-......|++.+.. |.+++.++|..+ +||.++|..+++
T Consensus 9 ~~md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~ 51 (111)
T 3b73_A 9 SWMTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLK 51 (111)
T ss_dssp TTCCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHH
Confidence 3434456888998865 999999999999 999999999998
No 289
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=87.70 E-value=0.39 Score=33.81 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-++|+.++|+..||+++||.+|..
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4479999999999999999999988
No 290
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=87.67 E-value=0.58 Score=31.16 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=26.4
Q ss_pred HHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 184 EGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 184 ~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
+.+...+++..+.|.+.|||.+||.+|.++.
T Consensus 15 ~~r~~~glsq~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 15 SVLAEKGKTNLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHTCCHHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 3344566999999999999999999999865
No 291
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=87.56 E-value=0.72 Score=34.81 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=31.4
Q ss_pred HHHHHH-HHHHHcCCC-------CHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 36 EDMDAA-LEALRAGQM-------SLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 36 e~~~~A-I~~~~~g~~-------S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
+++... .+.|.+|.+ |.+++|++|||+++||++-+..+.-+|
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G 65 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAG 65 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 445444 446677665 799999999999999999888764433
No 292
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=87.54 E-value=0.36 Score=32.70 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..++|+.++|++.||+++||.+|..
T Consensus 13 ~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 13 RLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4589999999999999999999976
No 293
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=87.54 E-value=0.73 Score=35.04 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.2
Q ss_pred HHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 36 EDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 36 e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (188)
T 3qkx_A 11 EQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFK 50 (188)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHcC
Confidence 344 4455555553 58999999999999999998744
No 294
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=87.53 E-value=0.5 Score=36.85 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCCCHHHHHHH-HHHH-Hc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 31 KTWTHEDMDAA-LEAL-RA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 31 ~kyt~e~~~~A-I~~~-~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.-+.+.++.| ++.+ .+ | +.|+++||++.||+++|||+...
T Consensus 22 ~~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 67 (212)
T 3nxc_A 22 KRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFP 67 (212)
T ss_dssp -CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCS
T ss_pred chHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCC
Confidence 55677888766 6645 44 3 69999999999999999998743
No 295
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=87.49 E-value=0.4 Score=32.90 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-++|+.++|+.+||++++|.+|.+
T Consensus 21 ~~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 21 EKGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4689999999999999999999976
No 296
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=87.44 E-value=0.29 Score=33.48 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=21.8
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
| |+.++|+.+||+++||.+|.+.
T Consensus 12 g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 12 G-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp S-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred C-CHHHHHHHHCCCHHHHHHHHHC
Confidence 5 9999999999999999999985
No 297
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=87.43 E-value=1.3 Score=29.37 Aligned_cols=34 Identities=6% Similarity=-0.102 Sum_probs=27.6
Q ss_pred HHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 182 ALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 182 aV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
+-+.....+++..+.|...|||.++|.+|.++.+
T Consensus 15 l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 15 LKKIRTQKGVSQEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCC
Confidence 3344455779999999999999999999988653
No 298
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=87.38 E-value=0.4 Score=35.81 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 39 DAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 39 ~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
+.++ .+.+|++|+.++|+.+||+++|+++.++++.
T Consensus 32 l~~L-~~~~~~~t~~ela~~l~~~~stvs~~l~~L~ 66 (152)
T 1ku9_A 32 YAIL-YLSDKPLTISDIMEELKISKGNVSMSLKKLE 66 (152)
T ss_dssp HHHH-HHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHH-HHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4444 3346889999999999999999999999863
No 299
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=87.35 E-value=0.77 Score=33.68 Aligned_cols=25 Identities=8% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 48 GQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 48 g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
.++|+.+||..+|||..||++++.+
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999999998875
No 300
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=87.34 E-value=1.4 Score=28.96 Aligned_cols=33 Identities=9% Similarity=-0.096 Sum_probs=27.2
Q ss_pred HHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 182 ALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 182 aV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
+-+.....+++..+.|...|||.++|.+|.++.
T Consensus 18 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 18 LRELRTAKGLSQETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 334445577999999999999999999998865
No 301
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=87.28 E-value=0.52 Score=32.02 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
-..|..+ ..-|+|+.++|+..||++++|.+|..
T Consensus 12 ~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 12 VQLLTKLRKEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3444444 35689999999999999999999976
No 302
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=87.13 E-value=1 Score=34.56 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=29.4
Q ss_pred HHHHHHHHH-hCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIR-SGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~-~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
...|+..+. ++.+++.++|..+|+|.+||.+.++
T Consensus 9 ~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 43 (150)
T 2w25_A 9 DRILVRELAADGRATLSELATRAGLSVSAVQSRVR 43 (150)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 446777765 4679999999999999999999998
No 303
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=87.03 E-value=1.2 Score=31.96 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHH
Q psy17316 116 TKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIAR 157 (229)
Q Consensus 116 ~~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik 157 (229)
...|+-+.....+..++. ++++.++|++.||+++||..+++
T Consensus 14 ~~~~~~~~~~~kLK~il~-GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 14 PEQWSHTTVRNALKDLLK-DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCCCHHHHHHHHHHHHT-TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH-hcCHHHHHHHcCCCHHHHHHHHc
Confidence 456777777777788888 67999999999999999999876
No 304
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=86.98 E-value=1 Score=37.93 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=23.5
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
-+++.++|+.+||+..||+.|-+. |+-
T Consensus 5 ~~~i~e~a~~~gvs~~tlr~y~~~-gll 31 (278)
T 1r8e_A 5 YYSIGEVSKLANVSIKALRYYDKI-DLF 31 (278)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHT-TSS
T ss_pred cEeHHHHHHHHCcCHHHHHHHHHC-CCC
Confidence 478999999999999999999876 543
No 305
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=86.94 E-value=1 Score=35.90 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=32.3
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHhCCChHHHHHHHH-hhcCC
Q psy17316 178 DLEIALEGIRS-GQTTVQRASAEYGIPSGTLYGRCK-LSRST 217 (229)
Q Consensus 178 ~r~eaV~~~~~-~~~s~~eAA~~fgVp~~tv~~~vk-~~~~~ 217 (229)
...+|++.+.. +.+++.++|..+|+|.+||+++++ +...|
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34577877764 779999999999999999999998 44443
No 306
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=86.90 E-value=0.79 Score=35.56 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=28.7
Q ss_pred CHHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.+ ..|++.+.+. +.|+++||++.||+++|||++..
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (185)
T 2yve_A 5 KKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFP 46 (185)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHhCc
Confidence 44555 4555555553 48999999999999999999854
No 307
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=86.86 E-value=0.56 Score=31.94 Aligned_cols=33 Identities=6% Similarity=0.019 Sum_probs=26.6
Q ss_pred HHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
-..|..+ ..-++|+.++|+..||+++||.+|-.
T Consensus 13 g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 13 SFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 3444444 35789999999999999999999976
No 308
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=86.86 E-value=0.26 Score=38.28 Aligned_cols=37 Identities=11% Similarity=-0.068 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 175 KPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 175 t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
++..| +|+....-.++|+.|+|..+|||..||..++.
T Consensus 95 p~~~r-~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~ 131 (157)
T 2lfw_A 95 TPLSR-QALLLTAMEGFSPEDAAYLIEVDTSEVETLVT 131 (157)
T ss_dssp CTTHH-HHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34434 55655545569999999999999999999885
No 309
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=86.84 E-value=0.88 Score=35.67 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=31.6
Q ss_pred HHHHHHHHH-hCCCcHHHHHHHhCCChHHHHHHHH-hhcCC
Q psy17316 179 LEIALEGIR-SGQTTVQRASAEYGIPSGTLYGRCK-LSRST 217 (229)
Q Consensus 179 r~eaV~~~~-~~~~s~~eAA~~fgVp~~tv~~~vk-~~~~~ 217 (229)
-.+|++.+. ++.+++.++|..+|+|.+||+++++ +...|
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456777775 4679999999999999999999998 44444
No 310
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=86.82 E-value=0.68 Score=37.37 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=30.7
Q ss_pred CCCCCHHHHHH-HHHHHH-cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 30 TKTWTHEDMDA-ALEALR-AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 30 ~~kyt~e~~~~-AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+...+.+.++. |++.+. +|++|+++||++.||+++|||+...
T Consensus 8 ~~~~~r~~Il~aA~~l~~~~G~~s~~~IA~~aGvs~~tlY~hF~ 51 (213)
T 2g7g_A 8 VARLDRERIAEAALELVDRDGDFRMPDLARHLNVQVSSIYHHAK 51 (213)
T ss_dssp ---CCHHHHHHHHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCHhHHHHHcC
Confidence 34567777754 454443 4689999999999999999998654
No 311
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=86.82 E-value=1.1 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=29.3
Q ss_pred HHHHHHHhCC--CcHHHHHHHhCCChHHHHHHHH-hhcCC
Q psy17316 181 IALEGIRSGQ--TTVQRASAEYGIPSGTLYGRCK-LSRST 217 (229)
Q Consensus 181 eaV~~~~~~~--~s~~eAA~~fgVp~~tv~~~vk-~~~~~ 217 (229)
+++.++.+++ +++...|++|||++..|+.-++ +..-|
T Consensus 14 ~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KG 53 (59)
T 2xvc_A 14 ELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKG 53 (59)
T ss_dssp HHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 5666776643 8999999999999999999987 44433
No 312
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=86.81 E-value=0.73 Score=30.23 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=26.2
Q ss_pred HHHHHH-HcCCCCHHHHHHHcC--CChhhHHHHHH
Q psy17316 40 AALEAL-RAGQMSLTKASVSYG--IPSTTLWQRAH 71 (229)
Q Consensus 40 ~AI~~~-~~g~~S~~~aA~~~g--Ip~sTL~~~i~ 71 (229)
..|..+ ...|+|+.++|+..| |++++|.+|..
T Consensus 11 ~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 11 AKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 344433 356899999999999 99999999987
No 313
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=86.78 E-value=0.41 Score=32.69 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=25.9
Q ss_pred HHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 40 AALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 40 ~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|..+ ..-|+|+.++|+..||++++|.+|..
T Consensus 17 ~~l~~~R~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 17 DLLLEARSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 344433 34689999999999999999999976
No 314
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=86.77 E-value=1.1 Score=34.96 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=30.0
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 178 DLEIALEGIRS-GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 178 ~r~eaV~~~~~-~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
...++++.+.. +.+++.++|..+|+|.+||+++++
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 46 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVALSPSPCLRRLK 46 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34577877754 679999999999999999999998
No 315
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=86.77 E-value=0.79 Score=37.99 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHH-HHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 29 VTKTWTHEDMDA-ALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 29 ~~~kyt~e~~~~-AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+...+.+.++. |++.+.+. ++|+++||++.||+++|||+...
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~ 71 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFR 71 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTS
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHHHcC
Confidence 356678888854 55555443 58999999999999999999754
No 316
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=86.76 E-value=1.1 Score=34.06 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=32.0
Q ss_pred HHHHHHH-HHHHcCCC-------CHHHHHHHcCCChhhHHHHHHHhCCCCC
Q psy17316 36 EDMDAAL-EALRAGQM-------SLTKASVSYGIPSTTLWQRAHRLGIHTP 78 (229)
Q Consensus 36 e~~~~AI-~~~~~g~~-------S~~~aA~~~gIp~sTL~~~i~~~gi~~~ 78 (229)
+++...| +.|.+|.+ |.+++|++|||+++||++-+..+...|.
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gl 57 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGI 57 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 4444333 46666654 8999999999999999998888755543
No 317
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=86.68 E-value=1.5 Score=29.94 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=28.7
Q ss_pred HHHHHHHH-HHHHhCCCcHHHHHHHhCCChHHHHHHHHh
Q psy17316 176 PEDLEIAL-EGIRSGQTTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 176 ~e~r~eaV-~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
....-+.| +.....+++..+.|...|||.++|.+|.++
T Consensus 10 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 33333334 444457799999999999999999999884
No 318
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=86.68 E-value=1.5 Score=33.75 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=24.1
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..-|+|+.++|+.+||++++|.+|-+
T Consensus 78 ~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 78 MKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999999999987
No 319
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=86.65 E-value=0.98 Score=36.40 Aligned_cols=40 Identities=3% Similarity=0.003 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
+.++.+.. +|.+..-.++|+.+||+.+|||.+||++++++
T Consensus 187 ~L~~~~r~-vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~r 226 (239)
T 1rp3_A 187 KLPEREKL-VIQLIFYEELPAKEVAKILETSVSRVSQLKAK 226 (239)
T ss_dssp TSCHHHHH-HHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCHHHHH-HHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 34444443 33343345889999999999999999998875
No 320
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=86.63 E-value=1.2 Score=33.46 Aligned_cols=34 Identities=9% Similarity=-0.003 Sum_probs=28.7
Q ss_pred HHHHHHHHHh-CC--CcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRS-GQ--TTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~-~~--~s~~eAA~~fgVp~~tv~~~vk 212 (229)
...|+..+.+ ++ ++..++|..+++|.+|||+.++
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~ 64 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVK 64 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4567776664 45 7999999999999999999998
No 321
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=86.63 E-value=1.2 Score=30.99 Aligned_cols=34 Identities=6% Similarity=0.031 Sum_probs=27.3
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 38 MDAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 38 ~~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+-..|..+ ..-|+|+.++|+..||++++|.+|-.
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 34445544 35789999999999999999999965
No 322
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=86.62 E-value=0.54 Score=36.35 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=31.4
Q ss_pred CCCCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHH
Q psy17316 30 TKTWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRA 70 (229)
Q Consensus 30 ~~kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i 70 (229)
+++.|.+.++ .|++.+.+. +.|+++||++.||+++|||+..
T Consensus 4 ~a~~tRe~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F 48 (178)
T 4hku_A 4 MARLSQEIILNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYKHY 48 (178)
T ss_dssp -CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTC
T ss_pred hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCcCHhHHHHHC
Confidence 5677888875 455555543 5899999999999999999863
No 323
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=86.60 E-value=0.35 Score=37.52 Aligned_cols=41 Identities=12% Similarity=-0.028 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 31 ~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
...++.+.. ++.+..-.|+|+.+||..+|||.+||+.++.+
T Consensus 92 ~~Lp~~~r~-vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~r 132 (157)
T 2lfw_A 92 ARMTPLSRQ-ALLLTAMEGFSPEDAAYLIEVDTSEVETLVTE 132 (157)
T ss_dssp TTSCTTHHH-HHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHH
T ss_pred HhCCHHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 445555554 34344345889999999999999999998886
No 324
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=86.60 E-value=0.57 Score=31.87 Aligned_cols=51 Identities=8% Similarity=0.006 Sum_probs=35.9
Q ss_pred CCHHHHHHHhCCChHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHhCCCcHHHHHH
Q psy17316 136 ISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEGIRSGQTTVQRASA 198 (229)
Q Consensus 136 ~S~~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~~~~~~~s~~eAA~ 198 (229)
.++.++|+..||+.+|+.+++.. ....+++-+..|.+.+.+-+...+..|.
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln~------------~~~vs~~t~~rV~~~a~~lgY~pn~~a~ 60 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALMN------------PDKVSQATRNRVEKAAREVGYLPQPMGR 60 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTTC------------CCCSCHHHHHHHHHHHHHHCCCC-----
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC------------CCCCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 59999999999999999996642 1235678888888887776665555554
No 325
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=86.59 E-value=0.56 Score=37.62 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=29.8
Q ss_pred CCCCCCCCHHHHHH-HHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 27 LTVTKTWTHEDMDA-ALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 27 ~~~~~kyt~e~~~~-AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+..+..-+.+.++. |++.+.+. +.|+++||++.||+++|||+...
T Consensus 24 r~~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 72 (226)
T 2pz9_A 24 GGGSTDSTRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFR 72 (226)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCS
T ss_pred cccchhHHHHHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHHHHHHcC
Confidence 33455567777754 44455443 58999999999999999998744
No 326
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=86.58 E-value=0.98 Score=34.76 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=29.6
Q ss_pred HHHHHHHHHh-CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRS-GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~-~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..+|++.+.. +.+++.++|..+|+|.+||++.++
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 43 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKITGLAESTIHERIR 43 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4577877764 679999999999999999999998
No 327
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=86.56 E-value=0.98 Score=34.73 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=29.5
Q ss_pred HHHHHHHHHh-CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRS-GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~-~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..++++.+.. +.+++.++|..+|+|.+||+++++
T Consensus 10 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 44 (152)
T 2cg4_A 10 DRGILEALMGNARTAYAELAKQFGVSPETIHVRVE 44 (152)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4577777755 679999999999999999999998
No 328
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=86.40 E-value=0.73 Score=35.12 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=29.5
Q ss_pred CCCHHHHH-HHHHHHHc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDMD-AALEALRA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~~-~AI~~~~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-+.+.++ .|++.+.+ .+.|+++||++.||+++|||+...
T Consensus 5 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 48 (191)
T 1sgm_A 5 GDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFP 48 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTT
T ss_pred cchHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHHcc
Confidence 34555564 45555544 258999999999999999998854
No 329
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=86.38 E-value=0.69 Score=35.55 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=28.8
Q ss_pred CCHHHHH-HHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 33 WTHEDMD-AALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 33 yt~e~~~-~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
-+.+.++ .|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFG 50 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 3445554 45555544 3 58999999999999999998754
No 330
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=86.38 E-value=1.1 Score=32.86 Aligned_cols=24 Identities=4% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 189 GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 189 ~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
+++|+.++|..+|||.+||..+..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 569999999999999999999875
No 331
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=86.37 E-value=0.61 Score=37.63 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=30.3
Q ss_pred CCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|.+.++ .|++.+.+. ++|+++||++.||+++|||+...
T Consensus 2 ~ltr~~Il~aA~~l~~~~G~~~~s~~~IA~~~Gvs~~slY~hF~ 45 (207)
T 2xpw_A 2 RLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVK 45 (207)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhcC
Confidence 45667764 455555443 58999999999999999998754
No 332
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=86.35 E-value=1.2 Score=33.95 Aligned_cols=34 Identities=6% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHHHHHHh-CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRS-GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~-~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
...+++.+.. +.+++.++|..+|||.+||.+.++
T Consensus 7 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 41 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVR 41 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3467777654 679999999999999999999998
No 333
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=86.35 E-value=0.77 Score=34.63 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=28.9
Q ss_pred HHHHHHHHH-hCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIR-SGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~-~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
...|+..+. ++.+++.++|..+|||.+||++.++
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~ 40 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGISETAVRKRVK 40 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346777665 4679999999999999999999998
No 334
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=86.33 E-value=0.91 Score=37.40 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..+..|+..+..|.+++.++|..+|||.+||+..++
T Consensus 15 ~~rl~IL~~L~~~~~s~~eLa~~l~is~stvs~hLk 50 (202)
T 2p4w_A 15 ETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLR 50 (202)
T ss_dssp HHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 458889999989999999999999999999999998
No 335
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=86.32 E-value=1.7 Score=36.69 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHH-------HHHHcCC--C-CHHHHHHHcCCChhhHHHHHHHhCCCCC
Q psy17316 31 KTWTHEDMDAAL-------EALRAGQ--M-SLTKASVSYGIPSTTLWQRAHRLGIHTP 78 (229)
Q Consensus 31 ~kyt~e~~~~AI-------~~~~~g~--~-S~~~aA~~~gIp~sTL~~~i~~~gi~~~ 78 (229)
..||.+++..+. +.++.|. + |..++|+..|||.-++++|.+.+|+..+
T Consensus 50 ~G~t~~~i~~a~~~l~l~~~~LLGg~~~yvT~~eVAe~aGv~~e~~rr~wRalGfp~~ 107 (222)
T 2ev1_A 50 QGITPDEIRATNPPLLLATRHLVGDDGTYVSAREISENYGVDLELLQRVQRAVGLARV 107 (222)
T ss_dssp TTCCHHHHHHSSSCTTHHHHHHTTCCSCEECHHHHHHHHTCCHHHHHHHHHHHCCCCC
T ss_pred cCCCHHHHHHHhhhhhhHHHHHhCCCcCcCCHHHHHHHHCcCHHHHHHHHHHhCCCCC
Confidence 567777777644 5665544 4 9999999999999999999999998765
No 336
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=86.30 E-value=0.88 Score=30.09 Aligned_cols=32 Identities=3% Similarity=-0.067 Sum_probs=26.4
Q ss_pred HHHHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 184 EGIRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 184 ~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
+.....+++..+.|...|||.++|.+|.++..
T Consensus 12 ~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 12 ARRKKLKIRQAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 34445669999999999999999999988643
No 337
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=86.25 E-value=0.53 Score=38.13 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHH-HHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 27 LTVTKTWTHEDMDAA-LEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 27 ~~~~~kyt~e~~~~A-I~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
...+...+.+.++.| ++.+.+. +.|+++||++.||+++|||+...
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 67 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFR 67 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCS
T ss_pred cccccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 344677888888554 5455443 58999999999999999998743
No 338
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=86.25 E-value=1.1 Score=30.48 Aligned_cols=29 Identities=3% Similarity=-0.017 Sum_probs=25.2
Q ss_pred HhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 187 RSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 187 ~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
.+.+++..+.|...|||.++|.+|.++.+
T Consensus 22 ~~~gltq~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 22 NELGLSYESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHTCCHHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHcCCC
Confidence 34669999999999999999999998653
No 339
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=86.16 E-value=1 Score=35.28 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 181 IALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 181 eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
+|+....-.++|+.++|..+|||.+||+.++.
T Consensus 147 ~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ 178 (194)
T 1or7_A 147 MAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 178 (194)
T ss_dssp HHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 44544444569999999999999999999886
No 340
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=85.99 E-value=0.9 Score=34.31 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=27.5
Q ss_pred HHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 36 EDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 36 e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (170)
T 3egq_A 7 VRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHFE 46 (170)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHHcC
Confidence 344 4555566554 48999999999999999999744
No 341
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=85.96 E-value=0.78 Score=35.55 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=29.9
Q ss_pred HHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 41 ALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 41 AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
+|..+.+|.+++.++++.+||+++||.+.++++.-.
T Consensus 29 IL~~L~~g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 29 IVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp HHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 444445889999999999999999999999986433
No 342
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=85.91 E-value=0.92 Score=32.19 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.4
Q ss_pred cCCCCHHHHHHHcCCChhh----HHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTT----LWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sT----L~~~i~ 71 (229)
.-|+|+.++|+..||+++| |.+|-.
T Consensus 12 ~~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 12 RAGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 4589999999999999999 888876
No 343
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=85.91 E-value=0.58 Score=35.78 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=30.9
Q ss_pred CCCCCHHHHHH-HHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 30 TKTWTHEDMDA-ALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 30 ~~kyt~e~~~~-AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+..-+.+.+++ |++.+.+. +.|+++||++.||+++|||+...
T Consensus 5 r~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (183)
T 1zk8_A 5 RIGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVK 50 (183)
T ss_dssp -CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHHHcC
Confidence 34557777754 55555443 58999999999999999998643
No 344
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=85.83 E-value=0.81 Score=32.67 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=23.0
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-++|+.++|+.+||+++||.+|-.
T Consensus 41 ~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 41 ALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4689999999999999999999965
No 345
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=85.79 E-value=1.1 Score=34.73 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=30.6
Q ss_pred CCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 32 TWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 32 kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
.-+.+.++ .|++.+.+. +.|+++||++.||+++|||+....
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 50 (195)
T 2dg7_A 6 PGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPD 50 (195)
T ss_dssp TTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcCC
Confidence 34556664 455555554 489999999999999999998763
No 346
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=85.74 E-value=1 Score=33.05 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHHHHHcCCCCHHHHHHHc-CCChhhHHHHHHHh
Q psy17316 41 ALEALRAGQMSLTKASVSY-GIPSTTLWQRAHRL 73 (229)
Q Consensus 41 AI~~~~~g~~S~~~aA~~~-gIp~sTL~~~i~~~ 73 (229)
++..+.+|.+++.++|+.+ ||+++||.+.++++
T Consensus 27 IL~~L~~~~~~~~eLa~~l~~is~~tvs~~L~~L 60 (112)
T 1z7u_A 27 LMDELFQGTKRNGELMRALDGITQRVLTDRLREM 60 (112)
T ss_dssp HHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHhccCCHHHHHHHHHHH
Confidence 3444446899999999999 99999999999986
No 347
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=85.74 E-value=1.3 Score=37.34 Aligned_cols=68 Identities=10% Similarity=-0.018 Sum_probs=50.3
Q ss_pred CCCHHHHHHHhCCChHHHHHHHHHhCCc-ccCC-CCCCCCCCCHH--HHHHHHHHHHhCCCcHHHHHHHhCCC
Q psy17316 135 SISANKASKAYGIPSSTLYKIARKEGIR-LAQP-FNASPTAWKPE--DLEIALEGIRSGQTTVQRASAEYGIP 203 (229)
Q Consensus 135 ~~S~~~~a~k~gIp~sTL~~~ik~~g~k-~~~~-~~~~~r~~t~e--~r~eaV~~~~~~~~s~~eAA~~fgVp 203 (229)
.+++.++|+.+||+..||+.|-+. |.- .... ..+..|-|+.+ .++..|..+.+-+++..++...+...
T Consensus 5 ~~~i~e~a~~~gvs~~tlr~y~~~-gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 5 YYSIGEVSKLANVSIKALRYYDKI-DLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHT-TSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHHHHHTTSC
T ss_pred cEeHHHHHHHHCcCHHHHHHHHHC-CCCCCCccCCCCCccccCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhC
Confidence 468999999999999999999874 532 2110 11234556543 57788888888889999999998876
No 348
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=85.73 E-value=1 Score=35.16 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=26.2
Q ss_pred HHHHHHHHcC--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRAG--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 20 ~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~~F~ 54 (196)
T 2qwt_A 20 EVAYDTFAAEGLGVPMDEIARRAGVGAGTVYRHFP 54 (196)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHCC
Confidence 4555566554 48999999999999999999754
No 349
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=85.68 E-value=1.2 Score=32.82 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCC-------cHHHHHHHhCCChHHHHHHHH
Q psy17316 178 DLEIALEGIRSGQT-------TVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 178 ~r~eaV~~~~~~~~-------s~~eAA~~fgVp~~tv~~~vk 212 (229)
-...+.+.+..|.+ |..+.|..||||.+||+..++
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~ 55 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQ 55 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34456666666665 789999999999999999987
No 350
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=85.41 E-value=4.7 Score=30.37 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHh---CCcccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcHHHHHH
Q psy17316 123 ILNVALDALRAGSISANKASKAYGIPSSTLYKIARKE---GIRLAQPFNASPTAWKPEDLEIALEGIRS-GQTTVQRASA 198 (229)
Q Consensus 123 ~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~---g~k~~~~~~~~~r~~t~e~r~eaV~~~~~-~~~s~~eAA~ 198 (229)
.+...++++..|. |+.+||..-|++.+|++.++-.. |.+.....- -..-.+.+...+|.+++.. +..++..+-.
T Consensus 21 t~~~t~~l~~~G~-sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~i~~~-i~~~l~~~~~~~I~~~~~~~~~~~Lk~i~e 98 (122)
T 3iuo_A 21 MKVSIVQQIDRKV-ALDDIAVSHGLDFPELLSEVETIVYSGTRINIDYF-INEVMDEDHLEDIFEYFKESTTDSLEEAMQ 98 (122)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHTTCCHHHHHHHHHHHHHTTCCCCCHHH-HHHHSCHHHHHHHHHHHHHCSCCCHHHHHH
T ss_pred cHHHHHHHHHcCC-CHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHH-cccccCHHHHHHHHHHHHHcCcccHHHHHH
Confidence 4577788888886 99999999999999999987543 422221000 0001225666777777776 4457888889
Q ss_pred HhC--CChHHHHH
Q psy17316 199 EYG--IPSGTLYG 209 (229)
Q Consensus 199 ~fg--Vp~~tv~~ 209 (229)
.|+ ++|..++-
T Consensus 99 ~l~~~~sy~eIRl 111 (122)
T 3iuo_A 99 ELGKDYSEEEIRL 111 (122)
T ss_dssp HHTTTSCHHHHHH
T ss_pred HccCcCCHHHHHH
Confidence 995 88888765
No 351
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=85.40 E-value=0.75 Score=34.51 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHh---CCcccCCCCCCCCCCCHHHHHHHHHHHH-----hCCCcHHH
Q psy17316 124 LNVALDALRAGSISANKASKAYGIPSSTLYKIARKE---GIRLAQPFNASPTAWKPEDLEIALEGIR-----SGQTTVQR 195 (229)
Q Consensus 124 k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~---g~k~~~~~~~~~r~~t~e~r~eaV~~~~-----~~~~s~~e 195 (229)
+.+.+..+.....++.+++..+|++..++.+|++.. |.-...+ ...-+..+...++++.+. +|..++.+
T Consensus 9 ~~~i~~~~~~~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~---~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae 85 (121)
T 2pjp_A 9 WQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV---KDRYYRNDRIVEFANMIRDLDQECGSTCAAD 85 (121)
T ss_dssp HHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE---TTEEEEHHHHHHHHHHHHHHHHHHSSEEHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec---CCceECHHHHHHHHHHHHHHHHHCCCccHHH
Confidence 344445554344599999999999999999987643 4211111 122334444444444444 36799999
Q ss_pred HHHHhCCChHHHHHHH
Q psy17316 196 ASAEYGIPSGTLYGRC 211 (229)
Q Consensus 196 AA~~fgVp~~tv~~~v 211 (229)
+-..+|+|+--..-.+
T Consensus 86 ~Rd~lg~sRK~ai~lL 101 (121)
T 2pjp_A 86 FRDRLGVGRKLAIQIL 101 (121)
T ss_dssp HHHHHTSCHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHH
Confidence 9999999999444333
No 352
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=85.36 E-value=0.79 Score=33.36 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHHcCCCCHHHHHHHc-CCChhhHHHHHHHhCC
Q psy17316 40 AALEALRAGQMSLTKASVSY-GIPSTTLWQRAHRLGI 75 (229)
Q Consensus 40 ~AI~~~~~g~~S~~~aA~~~-gIp~sTL~~~i~~~gi 75 (229)
.+|..+.+|.+++.++|+.+ ||+++||.+.++++.-
T Consensus 18 ~IL~~L~~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 18 VILXHLTHGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp HHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34545557899999999999 9999999999998643
No 353
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=85.28 E-value=1.1 Score=34.50 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=25.8
Q ss_pred HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 24 ~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 59 (206)
T 3kz9_A 24 EIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFP 59 (206)
T ss_dssp HHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCC
T ss_pred HHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHcC
Confidence 3455555553 48999999999999999999744
No 354
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=85.24 E-value=0.9 Score=34.78 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=26.9
Q ss_pred HHHHHHHHHc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 38 MDAALEALRA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 38 ~~~AI~~~~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+..|++.+.+ .+.|+++||++.||+++|||+...
T Consensus 8 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 44 (194)
T 3bqz_B 8 LGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFK 44 (194)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTS
T ss_pred HHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCC
Confidence 3556666654 358999999999999999999754
No 355
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=85.24 E-value=0.29 Score=38.26 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.6
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
-.|+|+.+||..+|||.+||+.++++
T Consensus 149 ~~g~s~~eIA~~lgis~~tV~~~l~r 174 (184)
T 2q1z_A 149 FGDLTHRELAAETGLPLGTIKSRIRL 174 (184)
T ss_dssp HSCCSSCCSTTTCCCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35789999999999999999999886
No 356
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=85.19 E-value=0.74 Score=32.44 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=23.0
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-++|+.++|+.+||+++||.+|..
T Consensus 15 ~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 15 SEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4589999999999999999999966
No 357
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=85.18 E-value=1.2 Score=30.24 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 186 IRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 186 ~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
+...+ +..+.|.+.||+.++|.+|.++.+
T Consensus 8 r~~~g-sq~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 8 INKLG-SVSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHS-SHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHhC-CHHHHHHHHCCCHHHHHHHHHCCC
Confidence 34445 899999999999999999998754
No 358
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=85.17 E-value=1.2 Score=32.53 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=30.5
Q ss_pred CCCCCHHHHH----HHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 30 TKTWTHEDMD----AALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 30 ~~kyt~e~~~----~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+...+...+. +-|+.+ +.-|+|+.++|++.||+++||.+|=+
T Consensus 25 ~~~~~~~~l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 25 MKHVTAAALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 4556655554 334444 35799999999999999999999943
No 359
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=85.01 E-value=1.1 Score=34.68 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=28.0
Q ss_pred CHHHH-HHHHHHHHc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDM-DAALEALRA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~-~~AI~~~~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.+ ..|++.+.+ .+.|+.+||++.||+++|||++..
T Consensus 13 ~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 13 TQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 34444 345555544 368999999999999999999754
No 360
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=84.97 E-value=1.6 Score=31.12 Aligned_cols=30 Identities=7% Similarity=0.029 Sum_probs=26.1
Q ss_pred HHHHhCCCcHHHHHHHhCCChHHHHHHHHh
Q psy17316 184 EGIRSGQTTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 184 ~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
+.....++|..+.|...|||.++|.+|.++
T Consensus 8 ~~r~~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 8 QYRKEKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 445567799999999999999999999886
No 361
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=84.90 E-value=1.2 Score=34.73 Aligned_cols=33 Identities=15% Similarity=-0.002 Sum_probs=26.3
Q ss_pred HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 24 ~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 59 (218)
T 3gzi_A 24 LAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFG 59 (218)
T ss_dssp HHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHS
T ss_pred HHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 3455555554 47999999999999999999865
No 362
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=84.89 E-value=2.1 Score=35.29 Aligned_cols=41 Identities=7% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 174 ~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
.+.-+.-.-+.++...+++..++|..+|||+++|-++++.+
T Consensus 8 ~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~A 48 (192)
T 1zx4_A 8 HSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAA 48 (192)
T ss_dssp SCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHh
Confidence 34433444444445566999999999999999999998843
No 363
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=84.86 E-value=1.2 Score=33.69 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=31.5
Q ss_pred HHHHHHHH-HHHcCCC-------CHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 36 EDMDAALE-ALRAGQM-------SLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 36 e~~~~AI~-~~~~g~~-------S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
+++...|. .|.+|.+ |.+++|++|||+++||++-+..+...|
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~G 63 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQK 63 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45544444 5666654 999999999999999999888764443
No 364
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=84.84 E-value=0.44 Score=31.48 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=19.8
Q ss_pred CcHHHHHHHhCCChHHHHHHH
Q psy17316 191 TTVQRASAEYGIPSGTLYGRC 211 (229)
Q Consensus 191 ~s~~eAA~~fgVp~~tv~~~v 211 (229)
.+..+.|...||+.++|..|.
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 589999999999999999995
No 365
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=84.83 E-value=1.8 Score=31.80 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCC
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGI 75 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi 75 (229)
..|..+..-......++++++.++|+.+||+++|+.+.+++..-
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666543222223467899999999999999999999998643
No 366
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=84.80 E-value=1.6 Score=30.66 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=25.6
Q ss_pred HHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 184 EGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 184 ~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
+.....+++..+.|...|||.++|.+|.++.
T Consensus 16 ~~r~~~glsq~~lA~~~gis~~~is~~e~G~ 46 (94)
T 2kpj_A 16 SYIAKSEKTQLEIAKSIGVSPQTFNTWCKGI 46 (94)
T ss_dssp HHHTTSSSCHHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHhCC
Confidence 3344567999999999999999999998753
No 367
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=84.78 E-value=1.3 Score=36.58 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 173 AWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 173 ~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|+.++ +|+.++. .++++.|+|...|||..||...++
T Consensus 173 ~Lt~~e~-~vl~~~~-~g~s~~eIa~~l~is~~tV~~~~~ 210 (234)
T 1l3l_A 173 WLDPKEA-TYLRWIA-VGKTMEEIADVEGVKYNSVRVKLR 210 (234)
T ss_dssp CCCHHHH-HHHHHHT-TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4666655 7788865 559999999999999999999886
No 368
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=84.72 E-value=1.1 Score=36.13 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=31.5
Q ss_pred CCCHHH--HHHHHHHH-HcCCC--CHHHHHHHcCCC-hhhHHHHHHHh
Q psy17316 32 TWTHED--MDAALEAL-RAGQM--SLTKASVSYGIP-STTLWQRAHRL 73 (229)
Q Consensus 32 kyt~e~--~~~AI~~~-~~g~~--S~~~aA~~~gIp-~sTL~~~i~~~ 73 (229)
..|..+ +.+.|+.+ .+.++ |+.++|+.+||+ ++|+.+|+...
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l 50 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL 50 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHH
Confidence 345543 45666654 34577 999999999999 99999998863
No 369
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=84.68 E-value=1.2 Score=34.71 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=26.8
Q ss_pred HHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 36 EDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 36 e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 15 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 54 (189)
T 3vp5_A 15 NRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFE 54 (189)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHHCC
Confidence 444 3455555543 57999999999999999998744
No 370
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=84.65 E-value=0.83 Score=36.92 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=32.1
Q ss_pred HHHHHHHHHHH-c-C-CCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 36 EDMDAALEALR-A-G-QMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 36 e~~~~AI~~~~-~-g-~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
.+++++|..+. + | ..|++++|+.+|++++|++++++++.-.
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKK 51 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC
Confidence 45577777653 2 3 4899999999999999999999986433
No 371
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=84.65 E-value=1.4 Score=34.21 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=31.9
Q ss_pred CCCCCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 29 VTKTWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 29 ~~~kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.++.-+.+.++ .|++.+.+. +.|+++||++.||+++|||+...
T Consensus 13 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (207)
T 2rae_A 13 RRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFP 59 (207)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred cchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhhCC
Confidence 34455667665 445555442 58999999999999999999865
No 372
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=84.64 E-value=1.5 Score=33.50 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=31.2
Q ss_pred HHHHHHHHHH-H-cCCCCHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 36 EDMDAALEAL-R-AGQMSLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 36 e~~~~AI~~~-~-~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
++....|..+ . .|++++.++|+.+||+++||.+-++++.-.|
T Consensus 39 ~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~G 82 (155)
T 2h09_A 39 DDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMG 82 (155)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCC
Confidence 3444444333 2 4789999999999999999999999864444
No 373
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=84.63 E-value=0.98 Score=34.75 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.3
Q ss_pred HHHH-HHHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDM-DAALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~-~~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.+ ..|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 16 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (203)
T 3f1b_A 16 EQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYG 56 (203)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHhC
Confidence 3444 345555544 3 68999999999999999999743
No 374
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=84.59 E-value=0.64 Score=37.64 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=30.9
Q ss_pred CCCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 31 KTWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 31 ~kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
++.|.+.++ .|++.+.+. ++|+++||++.||+++|||+...
T Consensus 1 s~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 45 (202)
T 4ac0_A 1 SRLDKSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPTLYWHVK 45 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHTTCS
T ss_pred CcCCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCchhHHhhcC
Confidence 356778775 455555443 58999999999999999998643
No 375
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=84.56 E-value=0.9 Score=36.77 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCCCHHHH-HHHHHHHHcC----CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 31 KTWTHEDM-DAALEALRAG----QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 31 ~kyt~e~~-~~AI~~~~~g----~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..-+.+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 3 ~~~tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 48 (220)
T 1z0x_A 3 PKLSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFK 48 (220)
T ss_dssp -CCSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCS
T ss_pred ccchHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHHhcC
Confidence 34566766 4566666666 48999999999999999998544
No 376
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=84.54 E-value=5.8 Score=33.11 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHH
Q psy17316 117 KSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARK 158 (229)
Q Consensus 117 ~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~ 158 (229)
...++-.+..++..+...+.|..++|+.+|++.+++.+.++-
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~l 157 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRL 157 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 356666777777777666779999999999999999998763
No 377
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=84.46 E-value=0.96 Score=34.96 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=27.0
Q ss_pred HHHHH-HHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDMD-AALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~~-~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.++ .|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 14 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (202)
T 3lwj_A 14 RQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFV 54 (202)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHHcC
Confidence 33443 44444543 3 58999999999999999999744
No 378
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=84.40 E-value=1.9 Score=31.65 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 33 WTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 33 yt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
.|..+..-......++++++.++|+.+||+++|+.+.+++..
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455554322222346889999999999999999999999863
No 379
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.40 E-value=0.55 Score=39.96 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 48 GQMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 48 g~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
+..++.++|+.+||+++||++|++++++.
T Consensus 263 ~~~~~~~~a~~lgi~~~tl~~~l~~~~i~ 291 (324)
T 1hqc_A 263 GPVGLATLATALSEDPGTLEEVHEPYLIR 291 (324)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred CCchHHHHHHHhCCCHHHHHHHHhHHHHH
Confidence 34679999999999999999999997654
No 380
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=84.40 E-value=0.97 Score=35.09 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=26.8
Q ss_pred HHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 36 EDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 36 e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (220)
T 3lhq_A 17 QHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFK 56 (220)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhhcC
Confidence 444 3455555443 58999999999999999999744
No 381
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=84.31 E-value=1 Score=34.10 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=27.7
Q ss_pred HHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 16 r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (156)
T 3ljl_A 16 IQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFP 56 (156)
T ss_dssp HHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHHCC
Confidence 3444 3455555554 48999999999999999999854
No 382
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=84.29 E-value=0.66 Score=36.38 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 36 EDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 36 e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
...+.+|..+.+|.+++.++|+.+||+++||.+.++.+.
T Consensus 58 p~R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~ 96 (151)
T 3f6v_A 58 PTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLT 96 (151)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445777877778999999999999999999999999863
No 383
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=84.27 E-value=1.5 Score=33.81 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=28.7
Q ss_pred CHHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 8 ~~~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (192)
T 2zcm_A 8 MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYD 49 (192)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHCC
Confidence 44555 4556555543 58999999999999999999754
No 384
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=84.24 E-value=2.3 Score=28.63 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=26.7
Q ss_pred HHHHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 184 EGIRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 184 ~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
+.....+++..+.|...|||.++|.+|.++.+
T Consensus 17 ~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 17 KLRKEASLSQSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCC
Confidence 34445779999999999999999999988653
No 385
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=84.15 E-value=1 Score=32.43 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=24.0
Q ss_pred CHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 51 SLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 51 S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
|..++|++|||+++||++-++.+.-.|
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L~~~G 63 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLKSEG 63 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 999999999999999999998865444
No 386
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=84.10 E-value=1.5 Score=33.57 Aligned_cols=34 Identities=6% Similarity=-0.044 Sum_probs=28.9
Q ss_pred HHHHHHHHHh-CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 179 LEIALEGIRS-GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~-~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
...|++.+.. +..++.++|..+|+|.+||++.++
T Consensus 11 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 45 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELADILNTTRQRIARRID 45 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3467776654 679999999999999999999998
No 387
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=83.95 E-value=1.6 Score=32.81 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCC-------cHHHHHHHhCCChHHHHHHHH
Q psy17316 178 DLEIALEGIRSGQT-------TVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 178 ~r~eaV~~~~~~~~-------s~~eAA~~fgVp~~tv~~~vk 212 (229)
-...+.+.+..|.+ |..+.|.+||||.+||...++
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~ 59 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34455566666665 699999999999999999987
No 388
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=83.82 E-value=0.87 Score=34.95 Aligned_cols=40 Identities=8% Similarity=0.124 Sum_probs=29.6
Q ss_pred CCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-+.+.++ .|++.+.+. +.|+.+||++.||+++|||+...
T Consensus 13 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 56 (191)
T 4aci_A 13 TNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFG 56 (191)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHHCC
Confidence 34555554 555555543 48999999999999999999865
No 389
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=83.77 E-value=1.7 Score=33.68 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=31.3
Q ss_pred CCCCCHHHHH-HHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 30 TKTWTHEDMD-AALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 30 ~~kyt~e~~~-~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
++.-+.+.++ .|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 13 ~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 13 ETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFG 58 (213)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHS
T ss_pred CChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcC
Confidence 4445666664 44555544 3 58999999999999999999865
No 390
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=83.73 E-value=1.4 Score=33.91 Aligned_cols=37 Identities=11% Similarity=0.280 Sum_probs=28.4
Q ss_pred HHHH-HHHHHHHHc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDM-DAALEALRA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~-~~AI~~~~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.+ ..|++.+.+ .+.|+.+||++.||+++|||+...
T Consensus 5 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 5 RDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHHFG 45 (190)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 3444 455655654 358999999999999999999865
No 391
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=83.65 E-value=1.9 Score=29.34 Aligned_cols=32 Identities=6% Similarity=-0.003 Sum_probs=26.9
Q ss_pred HHHHHHhCCCcHHHHHHHhCCChHHHHHHHHh
Q psy17316 182 ALEGIRSGQTTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 182 aV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
+-++-...+++..+.|...|||.++|.+|-++
T Consensus 15 ik~~R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 15 IKQYRKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 33444667799999999999999999999886
No 392
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=83.59 E-value=1.4 Score=33.39 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=29.7
Q ss_pred CCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-+.+.++ .|++.+.+. +.|+++||++.||+++|||+...
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 52 (191)
T 3on4_A 9 SNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFP 52 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhcCC
Confidence 34556664 455555442 58999999999999999999844
No 393
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=83.56 E-value=2.9 Score=27.16 Aligned_cols=32 Identities=3% Similarity=-0.162 Sum_probs=26.8
Q ss_pred HHHHhCCCcHHHHHHHhC--CChHHHHHHHHhhc
Q psy17316 184 EGIRSGQTTVQRASAEYG--IPSGTLYGRCKLSR 215 (229)
Q Consensus 184 ~~~~~~~~s~~eAA~~fg--Vp~~tv~~~vk~~~ 215 (229)
+.....++|..+.|...| ||.++|.+|-++..
T Consensus 15 ~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 15 AIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 344557799999999999 99999999988653
No 394
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=83.56 E-value=0.59 Score=32.27 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.8
Q ss_pred CCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 49 QMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 49 ~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
-+++.+||..+||++++|++.++..
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHHC
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHcC
Confidence 4789999999999999999999874
No 395
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=83.48 E-value=1.2 Score=35.11 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHH--Hc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 33 WTHEDMDAALEAL--RA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 33 yt~e~~~~AI~~~--~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
-|.+.+++|...+ .+ .+.|+++||++.||+++|+|+...
T Consensus 19 ~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~ 62 (185)
T 3o60_A 19 KTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHK 62 (185)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 3556676665555 33 368999999999999999999744
No 396
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=83.45 E-value=0.96 Score=37.29 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 28 TVTKTWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 28 ~~~~kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..+...+.+.++ .|++.+.+. ++|+++||++.||+++|||+...
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~ 58 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHIT 58 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCC
T ss_pred CCCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHHhcC
Confidence 345567788775 555555544 58999999999999999998644
No 397
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=83.41 E-value=1.7 Score=30.93 Aligned_cols=34 Identities=9% Similarity=-0.034 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 181 IALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 181 eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
.+-+...+.+++..+.|...|||.+||.+|.++.
T Consensus 28 rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 28 KLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 3445566778999999999999999999999864
No 398
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=83.40 E-value=1.2 Score=33.94 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 10 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (194)
T 2g7s_A 10 ADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFP 50 (194)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHHHcC
Confidence 3444 3445555443 58999999999999999999744
No 399
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=83.37 E-value=2.1 Score=31.93 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
..|..+..-.......|++++.++|+.+||+++|+.+.+++..
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le 79 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4666665333333457899999999999999999999999863
No 400
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=83.34 E-value=2.2 Score=31.61 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=26.2
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
.+|++++.++|+.+||+++|+.+.++++.
T Consensus 44 ~~~~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 44 FEGPKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp HHCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 36889999999999999999999999863
No 401
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=83.34 E-value=1.1 Score=34.68 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=28.3
Q ss_pred CHHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 10 ~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~ 51 (193)
T 2dg8_A 10 RRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFT 51 (193)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhheeCC
Confidence 44555 4455555443 58999999999999999998744
No 402
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=83.29 E-value=1.2 Score=35.01 Aligned_cols=39 Identities=8% Similarity=0.086 Sum_probs=29.4
Q ss_pred CCHHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 33 WTHEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 33 yt~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
-+.+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 8 ATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 344555 4555555543 58999999999999999999865
No 403
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=83.27 E-value=1.5 Score=34.71 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=26.4
Q ss_pred HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+. +.|+.+||++.||+++|||+...
T Consensus 29 ~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~~F~ 64 (207)
T 3bjb_A 29 EAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFP 64 (207)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 4555566554 48999999999999999999754
No 404
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=83.26 E-value=0.97 Score=35.53 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=29.7
Q ss_pred CCCCHHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 31 KTWTHEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 31 ~kyt~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+..+.+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 7 ~~~tr~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F~ 51 (203)
T 2np5_A 7 SSTSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFS 51 (203)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cchhHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHHcC
Confidence 34456666 4555565543 58999999999999999999744
No 405
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=83.25 E-value=1.2 Score=35.10 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=29.3
Q ss_pred CCCHHHHH-HHHHHHHc-C-CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDMD-AALEALRA-G-QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~~-~AI~~~~~-g-~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-+.+.++ .|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 19 ~~~r~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 19 RQTRDALFTAATELFLEHGEGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHcC
Confidence 34555564 44445544 3 69999999999999999999865
No 406
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=83.24 E-value=0.93 Score=34.69 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=27.1
Q ss_pred HHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 36 EDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 36 e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (186)
T 2jj7_A 10 ENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFN 49 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhhhcC
Confidence 444 3445555443 48999999999999999999765
No 407
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=83.20 E-value=1.8 Score=31.17 Aligned_cols=33 Identities=6% Similarity=0.019 Sum_probs=26.9
Q ss_pred HHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
-..|..+ ..-++|+.++|+..||++++|.+|-.
T Consensus 30 g~~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 30 SFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3445444 35789999999999999999999976
No 408
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=83.20 E-value=1.3 Score=29.68 Aligned_cols=29 Identities=17% Similarity=0.059 Sum_probs=22.9
Q ss_pred HHHhCCCcHHHHHHHhCCChHHHHHHHHh
Q psy17316 185 GIRSGQTTVQRASAEYGIPSGTLYGRCKL 213 (229)
Q Consensus 185 ~~~~~~~s~~eAA~~fgVp~~tv~~~vk~ 213 (229)
.....+++..+.|...||+.++|.+|.++
T Consensus 10 ~r~~~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 10 ERIRLSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 34455688999999999999998888764
No 409
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=83.16 E-value=1.8 Score=32.73 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=31.0
Q ss_pred HHHHHHHHHHh--CCCcHHHHHHHh-----CCChHHHHHHHH
Q psy17316 178 DLEIALEGIRS--GQTTVQRASAEY-----GIPSGTLYGRCK 212 (229)
Q Consensus 178 ~r~eaV~~~~~--~~~s~~eAA~~f-----gVp~~tv~~~vk 212 (229)
.|..|++.+.+ +.+|..++...+ +||.+|||+.++
T Consensus 12 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~ 53 (131)
T 2o03_A 12 QRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQ 53 (131)
T ss_dssp HHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 58999999985 358999999988 999999999998
No 410
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=83.15 E-value=1.2 Score=34.54 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=27.4
Q ss_pred CHHHHH-HHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDMD-AALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~~-~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.++ .|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 19 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 60 (212)
T 1pb6_A 19 KKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP 60 (212)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhCC
Confidence 344443 44444444 2 58999999999999999999744
No 411
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=83.12 E-value=1.6 Score=33.19 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=30.0
Q ss_pred HHHHHHHH-HHHcCC------C-CHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 36 EDMDAALE-ALRAGQ------M-SLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 36 e~~~~AI~-~~~~g~------~-S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
+++...|. .|.+|. + |.+++|++|||+++||++=++.+..+|
T Consensus 17 ~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eG 66 (134)
T 4ham_A 17 EQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQE 66 (134)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 44544443 555543 4 899999999999999999888764443
No 412
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=83.10 E-value=1.4 Score=33.15 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=30.2
Q ss_pred HHHHHHHHH-cCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 38 MDAALEALR-AGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 38 ~~~AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
+..|++.+. +..+|+.++|..+|++.++|.+..++.
T Consensus 81 l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 81 ITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455665565 678999999999999999999999874
No 413
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=83.09 E-value=1.6 Score=33.36 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=26.4
Q ss_pred HHHHHHHHc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+ .+.|+.+||++.||+++|||+...
T Consensus 9 ~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~F~ 44 (179)
T 2eh3_A 9 EVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFK 44 (179)
T ss_dssp HHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHHcC
Confidence 456666654 358999999999999999999743
No 414
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=83.08 E-value=1.8 Score=36.61 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHhCCCC
Q psy17316 32 TWTHEDMDAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRLGIHT 77 (229)
Q Consensus 32 kyt~e~~~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~ 77 (229)
..+..+. .+++.+ .++++|+.++|+.+|++++|+++.++.+.-.|
T Consensus 149 ~L~~~~~-~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~G 194 (244)
T 2wte_A 149 DYSREEM-KLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFG 194 (244)
T ss_dssp CCCHHHH-HHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHH-HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3454443 233332 57899999999999999999999999864333
No 415
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=83.08 E-value=1.5 Score=34.97 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=28.9
Q ss_pred CHHHH-HHHHHHHHcCC---CCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDM-DAALEALRAGQ---MSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~-~~AI~~~~~g~---~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.+ ..|++.+.+.| .|+++||++.||+++|||+...
T Consensus 40 ~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~F~ 81 (214)
T 2guh_A 40 SRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFG 81 (214)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHHcC
Confidence 34444 34555665544 8999999999999999999865
No 416
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=83.07 E-value=0.89 Score=34.65 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 15 ~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (195)
T 3pas_A 15 EATVREVADHGFSATSVGKIAKAAGLSPATLYIYYE 50 (195)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHHcC
Confidence 3455555543 48999999999999999999744
No 417
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=83.06 E-value=0.94 Score=37.61 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=32.3
Q ss_pred CCCCCCHHHHH-HHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 29 VTKTWTHEDMD-AALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 29 ~~~kyt~e~~~-~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+...+.+.++ .|++.+.+ | ++|+++||++.||+++|||+...
T Consensus 15 ~r~~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~hF~ 61 (243)
T 2g7l_A 15 AKPALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVA 61 (243)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCC
T ss_pred CCcccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHHHcC
Confidence 35567888885 45555544 3 58999999999999999998644
No 418
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=83.05 E-value=1.4 Score=37.63 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 36 EDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 36 e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.++++.++.|.+.+.++.++|++++|.+.||+.++++.
T Consensus 196 ~~ll~TL~~yl~~~~~~~~tA~~L~iHrNTl~yRL~ri 233 (262)
T 3onq_A 196 DPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRA 233 (262)
T ss_dssp CHHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 36889999999989999999999999999999999984
No 419
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=83.04 E-value=2.2 Score=31.41 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=25.7
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.++++++.++|+.+||+++|+.+.+++.
T Consensus 42 ~~~~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 42 KDAPLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3588999999999999999999999985
No 420
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=83.03 E-value=1.7 Score=33.58 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=21.4
Q ss_pred CCcHHHHHHHhCCChHHHHHHHH
Q psy17316 190 QTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 190 ~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
+.|+.++|..-|||..|+|+...
T Consensus 27 ~~t~~~Ia~~agvs~~t~Y~~F~ 49 (195)
T 2dg7_A 27 NVTVTDIAERAGLTRRSYFRYFP 49 (195)
T ss_dssp GCCHHHHHHHTTCCHHHHHHHCS
T ss_pred ccCHHHHHHHhCCCHHHHHHHcC
Confidence 48999999999999999999876
No 421
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=83.02 E-value=1.9 Score=37.49 Aligned_cols=37 Identities=16% Similarity=-0.010 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 176 PEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 176 ~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+....|......+.+++.++|.+||||..||.+-++
T Consensus 7 ~~~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~ 43 (315)
T 2w48_A 7 IRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLK 43 (315)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4456677777778889999999999999999999988
No 422
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=83.01 E-value=1.9 Score=33.73 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHh-------CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 176 PEDLEIALEGIRS-------GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 176 ~e~r~eaV~~~~~-------~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+.|.+|++.... ++.|+.++|..-|||..|+|...+
T Consensus 9 ~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F~ 52 (210)
T 3vib_A 9 LKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFK 52 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCC
Confidence 4445556554443 468999999999999999999865
No 423
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=82.94 E-value=0.92 Score=34.60 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCCCHHHHH-HHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 31 KTWTHEDMD-AALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 31 ~kyt~e~~~-~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.-+.+.++ .|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (196)
T 3col_A 8 DMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFK 52 (196)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHhC
Confidence 344556664 44555544 3 58999999999999999998643
No 424
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=82.91 E-value=2 Score=34.07 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.7
Q ss_pred HHHHHHHH-hCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 180 EIALEGIR-SGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 180 ~eaV~~~~-~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+|+..+. ++.+++.++|..+|||.+||++.++
T Consensus 20 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~ 53 (171)
T 2ia0_A 20 RNILRLLKKDARLTISELSEQLKKPESTIHFRIK 53 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 36777765 4679999999999999999999998
No 425
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=82.89 E-value=1.7 Score=31.85 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 33 WTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 33 yt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
.|..+..-......++++++.++|+.+||+++|+.+.+++.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRM 71 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHH
Confidence 45555432222234688999999999999999999999986
No 426
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=82.88 E-value=1.3 Score=33.14 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=31.3
Q ss_pred HHHHHHHH-cCCCCHHHHHHHc--CCChhhHHHHHHHhCCC
Q psy17316 39 DAALEALR-AGQMSLTKASVSY--GIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 39 ~~AI~~~~-~g~~S~~~aA~~~--gIp~sTL~~~i~~~gi~ 76 (229)
..+++.+. +|.+|+.++|+.+ ||++.+++++++++.-.
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 45566664 4999999999999 99999999999986433
No 427
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=82.87 E-value=1.5 Score=36.76 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHH
Q psy17316 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHR 72 (229)
Q Consensus 31 ~kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~ 72 (229)
...++.++. ++.++. .|+|..+||..+|||.+||+.++++
T Consensus 196 ~~L~~~ere-vl~L~~-~G~s~~EIA~~L~iS~~TVk~~l~r 235 (258)
T 3clo_A 196 NILSEREKE-ILRCIR-KGLSSKEIAATLYISVNTVNRHRQN 235 (258)
T ss_dssp TSSCHHHHH-HHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCHHHHH-HHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 567777664 444554 6899999999999999999999886
No 428
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=82.87 E-value=0.61 Score=37.73 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=30.0
Q ss_pred CCCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..+.+.++ .|++.+.+. ++|+++||++.||+++|||+...
T Consensus 3 ~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tlY~~f~ 46 (207)
T 2vpr_A 3 KLDKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVK 46 (207)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCC
T ss_pred cccHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 45677775 455555443 58999999999999999998643
No 429
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=82.83 E-value=1.2 Score=34.74 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.4
Q ss_pred CCCHHHHH-HHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDMD-AALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~~-~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-+.+.++ .|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 53 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFP 53 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 34555564 45555544 3 58999999999999999999744
No 430
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=82.83 E-value=1.6 Score=33.88 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 15 ~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 50 (199)
T 2o7t_A 15 TTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFP 50 (199)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHcC
Confidence 4555566554 48999999999999999999854
No 431
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=82.82 E-value=2.3 Score=31.62 Aligned_cols=45 Identities=9% Similarity=-0.020 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCCC
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIH 76 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~ 76 (229)
..|..+..-......+|++++.++|+.+||+++|+.+.+++..-.
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 345555432222344689999999999999999999999986433
No 432
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=82.79 E-value=1.2 Score=31.33 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=23.9
Q ss_pred HHHHHHHhCC-CcHHHHHHHhCCChHHHHHHH
Q psy17316 181 IALEGIRSGQ-TTVQRASAEYGIPSGTLYGRC 211 (229)
Q Consensus 181 eaV~~~~~~~-~s~~eAA~~fgVp~~tv~~~v 211 (229)
.+|..+-.|+ .+..++|+++|+|++.|-+.+
T Consensus 19 ~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~L 50 (75)
T 1sfu_A 19 KEVLSLNTNDYTTAISLSNRLKINKKKINQQL 50 (75)
T ss_dssp HHHHTSCTTCEECHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHCCCHHHHHHHH
Confidence 3444444577 889999999999999877765
No 433
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=82.73 E-value=1.8 Score=34.28 Aligned_cols=38 Identities=13% Similarity=-0.076 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhC---CCcHHHHHHHhC-CChHHHHHHHH
Q psy17316 175 KPEDLEIALEGIRSG---QTTVQRASAEYG-IPSGTLYGRCK 212 (229)
Q Consensus 175 t~e~r~eaV~~~~~~---~~s~~eAA~~fg-Vp~~tv~~~vk 212 (229)
....|..|++.+..+ ..++.+++..++ ||.+|||+.++
T Consensus 27 ~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~ 68 (151)
T 3u1d_A 27 LHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVD 68 (151)
T ss_dssp CCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHH
Confidence 345799999999885 378999999999 99999999998
No 434
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=82.72 E-value=1 Score=35.00 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHH
Q psy17316 33 WTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRA 70 (229)
Q Consensus 33 yt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i 70 (229)
-+.+.++ .|++.+.+. +.|+++||++.||+++|||+..
T Consensus 13 ~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 54 (195)
T 2iu5_A 13 ITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYF 54 (195)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTC
T ss_pred HHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHHHc
Confidence 3556664 445555543 4899999999999999999864
No 435
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=82.69 E-value=2.1 Score=28.98 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=26.5
Q ss_pred HHHHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 184 EGIRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 184 ~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
+.....+++..+.|...|||.++|.+|-++.+
T Consensus 21 ~~R~~~gltq~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 21 EARSAAGITQKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCC
Confidence 34445669999999999999999999988653
No 436
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=82.65 E-value=1.2 Score=34.57 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=27.5
Q ss_pred HHHH-HHHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDM-DAALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~-~~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.+ ..|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 28 r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 68 (217)
T 3mvp_A 28 RNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYFA 68 (217)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHHcC
Confidence 3444 345555544 3 58999999999999999999754
No 437
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=82.62 E-value=0.97 Score=37.05 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=32.4
Q ss_pred CCCCCCHHHH------HHHHHHHH-cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 29 VTKTWTHEDM------DAALEALR-AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 29 ~~~kyt~e~~------~~AI~~~~-~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.+.|..++ .+.|+.+. .-++|+.++|+.+||+++||.+|.+
T Consensus 3 ~~~~lt~~~~~~~~~~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~ 52 (236)
T 3bdn_A 3 KKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (236)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTT
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3555665544 34555443 4688999999999999999999976
No 438
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=82.60 E-value=2.1 Score=35.78 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHhCCChHHHHHHHH-hhcCC
Q psy17316 176 PEDLEIALEGIRSG--QTTVQRASAEYGIPSGTLYGRCK-LSRST 217 (229)
Q Consensus 176 ~e~r~eaV~~~~~~--~~s~~eAA~~fgVp~~tv~~~vk-~~~~~ 217 (229)
-+.-..|++.+..+ .+++.++|..+|+|++||++.++ +...|
T Consensus 7 l~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G 51 (249)
T 1mkm_A 7 LKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKG 51 (249)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45567888888763 59999999999999999999998 44433
No 439
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=82.60 E-value=1.8 Score=36.15 Aligned_cols=39 Identities=8% Similarity=0.139 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHc-C-CCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 35 HEDMDAALEALRA-G-QMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 35 ~e~~~~AI~~~~~-g-~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
-+.-+.+++.+.. + .+|+.++|+.+|+|++|+++.++.+
T Consensus 7 l~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L 47 (249)
T 1mkm_A 7 LKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVL 47 (249)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444666766654 3 6999999999999999999999975
No 440
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=82.54 E-value=0.9 Score=34.80 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=28.6
Q ss_pred CCCCHHHHH-HHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 31 KTWTHEDMD-AALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 31 ~kyt~e~~~-~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.-+.+.++ .|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 8 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 52 (197)
T 3rd3_A 8 YDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFK 52 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTTCS
T ss_pred hHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHHHcC
Confidence 344556664 44445544 3 57999999999999999998643
No 441
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=82.53 E-value=1.4 Score=34.10 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHh
Q psy17316 33 WTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRL 73 (229)
Q Consensus 33 yt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~ 73 (229)
++..++ .++..+.+.+ |+..||+.+||+.++|++.+++.
T Consensus 24 ~~~~~L-~~f~av~e~g-S~s~AA~~L~iSqsavS~~I~~L 62 (135)
T 2ijl_A 24 LGHGKV-ELMQLIAETG-SISAAGRAMDMSYRRAWLLVDAL 62 (135)
T ss_dssp ESHHHH-HHHHHHHHHS-CHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHhC-CHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444 4455666655 99999999999999999999985
No 442
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=82.50 E-value=1.7 Score=31.53 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCcHHHHHHHh-CCChHHHHHHHH
Q psy17316 179 LEIALEGIRSGQTTVQRASAEY-GIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~~~~s~~eAA~~f-gVp~~tv~~~vk 212 (229)
+..|+..+.+|.+++.+++..+ ||+.++|...++
T Consensus 16 ~~~IL~~L~~~~~~~~eLa~~l~~is~~tls~~L~ 50 (107)
T 2hzt_A 16 KXVILXHLTHGKKRTSELKRLMPNITQKMLTQQLR 50 (107)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 6678888778889999999999 999999999998
No 443
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=82.48 E-value=1.3 Score=35.70 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=29.0
Q ss_pred CHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
|.+.++ .|++.+.+. ++|+++||++.||+++|||+...
T Consensus 3 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hf~ 44 (209)
T 3bqy_A 3 DRARTVQTALDLLNESGLDTLTMRRLAQAMDVQAGALYRYFA 44 (209)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCcchHHhhcC
Confidence 456664 555555443 58999999999999999999754
No 444
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=82.40 E-value=0.99 Score=34.81 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.4
Q ss_pred HHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 22 r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 62 (203)
T 3mnl_A 22 RKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRYFP 62 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHHcC
Confidence 3444 3455555443 58999999999999999999754
No 445
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=82.39 E-value=0.75 Score=32.97 Aligned_cols=25 Identities=8% Similarity=0.116 Sum_probs=23.0
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..++|+.++|+.+||+++||.+|..
T Consensus 29 ~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 29 DLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3489999999999999999999987
No 446
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=82.39 E-value=1.3 Score=33.96 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=25.5
Q ss_pred HHHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 15 ~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~F~ 50 (194)
T 3dpj_A 15 AAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFK 50 (194)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHcC
Confidence 344555544 3 68999999999999999999743
No 447
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=82.39 E-value=1.3 Score=35.63 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 45 r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~ 85 (229)
T 3bni_A 45 LTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFG 85 (229)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHHcC
Confidence 3444 3444455442 58999999999999999999844
No 448
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=82.37 E-value=1.2 Score=32.69 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=23.4
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-|+|+.++|+.+||+++||.+|-.
T Consensus 34 ~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 34 DYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4689999999999999999999987
No 449
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=82.34 E-value=2.3 Score=32.34 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCC-------cHHHHHHHhCCChHHHHHHHH
Q psy17316 180 EIALEGIRSGQT-------TVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 180 ~eaV~~~~~~~~-------s~~eAA~~fgVp~~tv~~~vk 212 (229)
..+.+.+..|.+ +..+.|..||||++||+..++
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~ 50 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLT 50 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 345555666654 789999999999999999987
No 450
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=82.34 E-value=2.7 Score=31.82 Aligned_cols=43 Identities=9% Similarity=-0.085 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
..|..+..-......++++++.++|+.+||+++|+.+.+++..
T Consensus 46 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455544222222336899999999999999999999999863
No 451
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=82.32 E-value=1.2 Score=35.14 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=28.0
Q ss_pred HHHH-HHHHHHHHcCC--CCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDM-DAALEALRAGQ--MSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~-~~AI~~~~~g~--~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.+ ..|++.+.+.| .|+++||++.||+++|||++..
T Consensus 14 r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tiY~~F~ 53 (224)
T 1t33_A 14 KSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYYFG 53 (224)
T ss_dssp HHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHhcC
Confidence 3444 45555555433 8999999999999999999865
No 452
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=82.31 E-value=3 Score=28.11 Aligned_cols=33 Identities=9% Similarity=-0.104 Sum_probs=27.2
Q ss_pred HHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 182 ALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 182 aV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
+-+.....++|..+.|...|||.++|.+|-++.
T Consensus 16 lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 16 IKKIRLEKGMTQEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCC
Confidence 334445577999999999999999999998865
No 453
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=82.31 E-value=1.8 Score=32.93 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=31.2
Q ss_pred HHHHHHHHHHh---CCCcHHHHHHHh-----CCChHHHHHHHH
Q psy17316 178 DLEIALEGIRS---GQTTVQRASAEY-----GIPSGTLYGRCK 212 (229)
Q Consensus 178 ~r~eaV~~~~~---~~~s~~eAA~~f-----gVp~~tv~~~vk 212 (229)
.|..|++.+.+ +.+|..++...+ +||.+|||+.++
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~ 61 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLT 61 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 49999999986 458999999988 899999999998
No 454
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=82.27 E-value=1.8 Score=34.81 Aligned_cols=37 Identities=3% Similarity=-0.058 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 175 KPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 175 t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
++.+| +|+....-.++++.++|..+|||.+||+.++.
T Consensus 189 ~~~~r-~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 189 PEREK-LVIQLIFYEELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp CHHHH-HHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHH-HHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 34444 44444444569999999999999999999876
No 455
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=82.18 E-value=2.1 Score=33.75 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 35 HEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 35 ~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.+.+.+-|..+..-. |+.++|+.+||+++||.+|.+
T Consensus 7 ~~~~~~rl~~~r~~~-tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 7 NVDVLDRICEAYGFS-QKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp HHHHHHHHHHHHTCS-SHHHHHHHTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhc-CHHHHHHHhCcCHHHHHHHHh
Confidence 345556666665544 999999999999999999988
No 456
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=82.15 E-value=1.4 Score=33.99 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=28.4
Q ss_pred CCHHHHH-HHHHHHHcCC--CCHHHHHHHcCCChhhHHHHHH
Q psy17316 33 WTHEDMD-AALEALRAGQ--MSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 33 yt~e~~~-~AI~~~~~g~--~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
-+.+.++ .|++.+.+.| .|+++||++.||+++|||+...
T Consensus 15 ~~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~~F~ 56 (194)
T 2q24_A 15 RNRDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYRNFP 56 (194)
T ss_dssp -CHHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHHHcC
Confidence 3556664 5555555432 7999999999999999998744
No 457
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=82.12 E-value=1.7 Score=34.00 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=28.8
Q ss_pred CHHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 31 ~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~ 72 (222)
T 3bru_A 31 AHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFR 72 (222)
T ss_dssp HHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhCC
Confidence 45555 4555555553 58999999999999999999854
No 458
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=82.11 E-value=1.9 Score=33.62 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=29.4
Q ss_pred CCCHHHH-HHHHHHHHc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 32 TWTHEDM-DAALEALRA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 32 kyt~e~~-~~AI~~~~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
.-+.+.+ ..|++.+.+ .+.|+++||++.||+++|||+...
T Consensus 6 ~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F~ 49 (197)
T 2gen_A 6 SSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFG 49 (197)
T ss_dssp --CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHCC
Confidence 3455666 455666654 257999999999999999999854
No 459
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=82.11 E-value=2.1 Score=32.04 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=31.0
Q ss_pred HHHHHHHHH-cCCCCHHHHHHHhCCChHHHHHHHHHh-CCc
Q psy17316 124 LNVALDALR-AGSISANKASKAYGIPSSTLYKIARKE-GIR 162 (229)
Q Consensus 124 k~~AV~~~~-~g~~S~~~~a~k~gIp~sTL~~~ik~~-g~k 162 (229)
+..|++.+. ...+|+.++|...|++.++|.+..+++ |..
T Consensus 81 l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 81 ITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGMT 121 (133)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 455566655 567899999999999999999999875 643
No 460
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=82.11 E-value=0.76 Score=33.40 Aligned_cols=26 Identities=0% Similarity=-0.005 Sum_probs=23.8
Q ss_pred HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 46 RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 46 ~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..-|+|+.++|+.+||+++||.+|..
T Consensus 21 ~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45689999999999999999999987
No 461
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=82.08 E-value=3.6 Score=28.43 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 177 EDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 177 e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
..-..+-+.....+++..+.|...||+.++|.+|.++.
T Consensus 13 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~ 50 (91)
T 1x57_A 13 EVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGR 50 (91)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 34444555556678999999999999999999998854
No 462
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=82.08 E-value=2.4 Score=32.77 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHh-------CCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 176 PEDLEIALEGIRS-------GQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 176 ~e~r~eaV~~~~~-------~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
.+.|..|++...+ ++.|+.++|..-|||+.|+|++..
T Consensus 11 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 11 IETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 4455555555444 568999999999999999999876
No 463
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=82.05 E-value=1.7 Score=35.91 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHhCCChHHHHHHHH
Q psy17316 173 AWKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 173 ~~t~e~r~eaV~~~~~~~~s~~eAA~~fgVp~~tv~~~vk 212 (229)
..|+.++ +|+.++.+| +++.|+|...|||..||..+++
T Consensus 175 ~Lt~~e~-~vl~~~~~g-~s~~eIa~~l~is~~tV~~~~~ 212 (236)
T 2q0o_A 175 MLSPREM-LCLVWASKG-KTASVTANLTGINARTVQHYLD 212 (236)
T ss_dssp SCCHHHH-HHHHHHHTT-CCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHH
Confidence 4566655 578887655 9999999999999999999886
No 464
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=82.03 E-value=1.8 Score=31.63 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHh-CCChHHHHHHHH
Q psy17316 179 LEIALEGIRSGQTTVQRASAEY-GIPSGTLYGRCK 212 (229)
Q Consensus 179 r~eaV~~~~~~~~s~~eAA~~f-gVp~~tv~~~vk 212 (229)
+..|+..+..|.+++.++|..+ +|+.++|...++
T Consensus 24 ~~~IL~~L~~~~~~~~eLa~~l~~is~~tvs~~L~ 58 (112)
T 1z7u_A 24 KLSLMDELFQGTKRNGELMRALDGITQRVLTDRLR 58 (112)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhccCCHHHHHHHHH
Confidence 5677777778999999999999 999999999998
No 465
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=82.02 E-value=2.4 Score=31.58 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
..|..+..-......+|++++.++|+.+||+++|+.+.+++..
T Consensus 39 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 39 PITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 3455554222222346889999999999999999999999863
No 466
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=82.01 E-value=1.8 Score=30.21 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=26.4
Q ss_pred HHHHhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 184 EGIRSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 184 ~~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
+.+...+++..+.|...|||.++|.+|.++.
T Consensus 15 ~~r~~~gltq~~lA~~~gis~~~is~~e~g~ 45 (94)
T 2ict_A 15 ESLDELNVSLREFARAMEIAPSTASRLLTGK 45 (94)
T ss_dssp HHHHHHTCCHHHHHHHHTCCHHHHHHHHHTS
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 3445566999999999999999999999864
No 467
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=82.00 E-value=1.3 Score=34.47 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=25.9
Q ss_pred HHHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+ | +.|+.+||++.||+++|||+...
T Consensus 16 ~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~ 51 (204)
T 3anp_C 16 RAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYP 51 (204)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHcCcccccHHHHHHHcCCchHHHHHHcC
Confidence 455555554 3 58999999999999999999744
No 468
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=81.85 E-value=2.8 Score=34.51 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHHh
Q psy17316 118 SWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKE 159 (229)
Q Consensus 118 kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~~ 159 (229)
..++..+ +++..+.+|. |.++||+..||+..|++.++++.
T Consensus 175 ~Lt~~e~-~vl~~~~~g~-s~~eIa~~l~is~~tV~~~~~~~ 214 (236)
T 2q0o_A 175 MLSPREM-LCLVWASKGK-TASVTANLTGINARTVQHYLDKA 214 (236)
T ss_dssp SCCHHHH-HHHHHHHTTC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455444 4667777765 99999999999999988887643
No 469
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=81.81 E-value=1.2 Score=32.65 Aligned_cols=34 Identities=9% Similarity=0.041 Sum_probs=26.8
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 38 MDAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 38 ~~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+-..|..+ ...|+|+.++|+..||++++|.+|-.
T Consensus 22 ~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 22 LAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 33444433 45789999999999999999999965
No 470
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=81.68 E-value=0.9 Score=34.38 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=27.0
Q ss_pred CHHHHHH-HHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDMDA-ALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~~~-AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.+++ |++.+.+. +.|+++||++.||+++|||+...
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 54 (177)
T 3kkc_A 13 TKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYE 54 (177)
T ss_dssp HHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHcC
Confidence 4455544 44444443 57999999999999999998643
No 471
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=81.67 E-value=2.4 Score=32.63 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=31.4
Q ss_pred HHHHHHHHHHh--CCCcHHHHHHHh-----CCChHHHHHHHH
Q psy17316 178 DLEIALEGIRS--GQTTVQRASAEY-----GIPSGTLYGRCK 212 (229)
Q Consensus 178 ~r~eaV~~~~~--~~~s~~eAA~~f-----gVp~~tv~~~vk 212 (229)
.|..|++.+.+ +.+|..++...+ +||.+|||+.++
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~ 64 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLR 64 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 49999999976 458999999999 999999999998
No 472
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=81.64 E-value=1.3 Score=35.23 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=28.2
Q ss_pred CHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.++ .|++.+.+. +.|+++||++.||+++|||+...
T Consensus 6 tr~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~ 47 (228)
T 3nnr_A 6 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 47 (228)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccchhcCC
Confidence 445554 455555543 58999999999999999998643
No 473
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=81.57 E-value=1.5 Score=33.88 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHc----CCCCHHHHHHHcCCChhhHHHHH
Q psy17316 30 TKTWTHEDMDAALEALRA----GQMSLTKASVSYGIPSTTLWQRA 70 (229)
Q Consensus 30 ~~kyt~e~~~~AI~~~~~----g~~S~~~aA~~~gIp~sTL~~~i 70 (229)
.+.-+.+.++.|...+.. .+.|+++||++.||+++|||+..
T Consensus 5 ~~~~tr~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F 49 (195)
T 3frq_A 5 PKLKSDDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRF 49 (195)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHH
T ss_pred CccCcHHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHHHHHHc
No 474
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=81.54 E-value=2.3 Score=32.10 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCC-------cHHHHHHHhCCChHHHHHHHH
Q psy17316 180 EIALEGIRSGQT-------TVQRASAEYGIPSGTLYGRCK 212 (229)
Q Consensus 180 ~eaV~~~~~~~~-------s~~eAA~~fgVp~~tv~~~vk 212 (229)
..+.+.+..|.+ +..+.|..||||++||...++
T Consensus 18 ~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~ 57 (126)
T 3by6_A 18 DRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYK 57 (126)
T ss_dssp HHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 344455666654 899999999999999999887
No 475
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=81.52 E-value=1.9 Score=28.97 Aligned_cols=30 Identities=17% Similarity=-0.012 Sum_probs=25.8
Q ss_pred HHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 186 IRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 186 ~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
....++|..+.|...|||.+||.+|-++.+
T Consensus 20 R~~~gltq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 20 RKKLSLTQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHcCCC
Confidence 345679999999999999999999988654
No 476
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=81.47 E-value=1.5 Score=34.04 Aligned_cols=38 Identities=11% Similarity=0.285 Sum_probs=27.6
Q ss_pred CHHHHH-HHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDMD-AALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~~-~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.++ .|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~ 56 (212)
T 3knw_A 15 KRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFE 56 (212)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHHCC
Confidence 344443 44444543 3 68999999999999999998744
No 477
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=81.47 E-value=1.9 Score=33.70 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=26.0
Q ss_pred HHHHHHHHc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+ .+.|+.+||++.||+++|||+...
T Consensus 18 ~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2xdn_A 18 EAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFN 53 (210)
T ss_dssp HHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCS
T ss_pred HHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHHhC
Confidence 445555554 368999999999999999999854
No 478
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.45 E-value=2.2 Score=31.41 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 33 WTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 33 yt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
.|..+..-.......+++++.++|+.+||+++|+.+.+++..
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le 75 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLE 75 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 455544222223346789999999999999999999999863
No 479
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=81.44 E-value=2.1 Score=31.28 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=27.8
Q ss_pred HHHhCCCcHHHHHHHhCCChHHHHHHHHhhc
Q psy17316 185 GIRSGQTTVQRASAEYGIPSGTLYGRCKLSR 215 (229)
Q Consensus 185 ~~~~~~~s~~eAA~~fgVp~~tv~~~vk~~~ 215 (229)
.+...+++..+.|...|||.++|..|.++.+
T Consensus 22 lr~~~gltq~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 22 LGFLDKMSANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHTTSCCHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 4677889999999999999999999998764
No 480
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=81.44 E-value=13 Score=30.23 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHH--cCCCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCCCCCC--CCcHHHHHHHHH
Q psy17316 34 THEDMDAALEALR--AGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKEGPTK--SWNEEILNVALD 97 (229)
Q Consensus 34 t~e~~~~AI~~~~--~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~~~~k--~~s~e~~~~a~~ 97 (229)
+.||-+++|-.+. .+.+++.++|+.+||+++|+.+-++++.-.|.-...+++ ..+++=+..+.+
T Consensus 3 ~~edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~ 70 (214)
T 3hrs_A 3 NKEDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSD 70 (214)
T ss_dssp CHHHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHH
Confidence 4677777776554 467999999999999999999999987554432222211 235555544443
No 481
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=81.42 E-value=2.2 Score=32.26 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCC---CCHHHHHHHhCCChHHHHHH
Q psy17316 124 LNVALDALRAGS---ISANKASKAYGIPSSTLYKI 155 (229)
Q Consensus 124 k~~AV~~~~~g~---~S~~~~a~k~gIp~sTL~~~ 155 (229)
+..|++.+.+.+ .|+.+||+.-||+++|+|+.
T Consensus 14 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (188)
T 3qkx_A 14 FSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLY 48 (188)
T ss_dssp HHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHH
Confidence 456667766544 69999999999999999997
No 482
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=81.40 E-value=1.5 Score=35.00 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=28.3
Q ss_pred CHHHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 41 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~ 82 (225)
T 2id3_A 41 IREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWG 82 (225)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCC
Confidence 34444 3555555543 58999999999999999998765
No 483
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=81.38 E-value=1.2 Score=34.66 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=25.6
Q ss_pred HHHcCCCCHHHHHHHcCCChhhHHHHHHHhCC
Q psy17316 44 ALRAGQMSLTKASVSYGIPSTTLWQRAHRLGI 75 (229)
Q Consensus 44 ~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi 75 (229)
.+...+.+...+|+++|+++.|++++++++++
T Consensus 151 ~~~~~~~~~~~ia~~l~is~~tv~~~l~~~~~ 182 (184)
T 3rqi_A 151 VLAENNNNISATARALNMHRRTLQRKLAKKPV 182 (184)
T ss_dssp HHHHTTSCHHHHHHHHTSCHHHHHHHHCC---
T ss_pred HHHhccccHHHHHHHcCCcHHHHHHHHHhcCC
Confidence 44456789999999999999999999987765
No 484
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=81.36 E-value=2.4 Score=31.44 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=25.9
Q ss_pred cCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 47 AGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 47 ~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
.+++++.++|+.+||+++|+.+.+++..
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 7889999999999999999999999863
No 485
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=81.31 E-value=4.8 Score=30.30 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCChHHHHHHHHH
Q psy17316 117 KSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARK 158 (229)
Q Consensus 117 ~kYs~e~k~~AV~~~~~g~~S~~~~a~k~gIp~sTL~~~ik~ 158 (229)
.+..-+....|+.+|+-.+.+-+++|.+|||+.+-+...+++
T Consensus 42 S~IrSekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~r 83 (111)
T 3m8j_A 42 SSIHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGR 83 (111)
T ss_dssp SCCCCHHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHH
Confidence 345557889999999998899999999999999998887664
No 486
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=81.27 E-value=2.2 Score=29.39 Aligned_cols=28 Identities=4% Similarity=-0.067 Sum_probs=25.0
Q ss_pred HhCCCcHHHHHHHhCCChHHHHHHHHhh
Q psy17316 187 RSGQTTVQRASAEYGIPSGTLYGRCKLS 214 (229)
Q Consensus 187 ~~~~~s~~eAA~~fgVp~~tv~~~vk~~ 214 (229)
...+++..+.|...|||.++|.+|.++.
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 4567999999999999999999999864
No 487
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=81.19 E-value=2 Score=33.45 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=28.3
Q ss_pred CHHHH-HHHHHHHHc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDM-DAALEALRA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~-~~AI~~~~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.+ ..|++.+.+ .+.|+++||++.||+++|||+...
T Consensus 15 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~ 56 (204)
T 2ibd_A 15 RRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFD 56 (204)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHHhcC
Confidence 33444 455555554 368999999999999999999744
No 488
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=81.14 E-value=1.9 Score=32.05 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhCC
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGI 75 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi 75 (229)
..|..+. .++..+..+++++.++|+.+||+++|+.+.+.+..-
T Consensus 35 ~lt~~~~-~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 35 ALTNTQE-HILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp CCCHHHH-HHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466654 344444455599999999999999999999998643
No 489
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=81.14 E-value=4.5 Score=29.17 Aligned_cols=60 Identities=12% Similarity=0.251 Sum_probs=43.6
Q ss_pred HHHHHHhCCChHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcHHHHHHHh-CCChHHHHHHHH
Q psy17316 139 NKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEGIRS-GQTTVQRASAEY-GIPSGTLYGRCK 212 (229)
Q Consensus 139 ~~~a~k~gIp~sTL~~~ik~~g~k~~~~~~~~~r~~t~e~r~eaV~~~~~-~~~s~~eAA~~f-gVp~~tv~~~vk 212 (229)
..+|+.|||+..-|.. .++.+.. ...|.-|.=+|.. .++|+.+++..| |..++||..-++
T Consensus 8 ~~Va~~f~i~~~dl~s-------------~~R~~~i-~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ 69 (94)
T 1j1v_A 8 KTVAEYYKIKVADLLS-------------KRRSRSV-ARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACR 69 (94)
T ss_dssp HHHHHHTTCCHHHHHS-------------CCCCHHH-HHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHhC-------------CCCCchh-HHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 4578888888877643 0112222 2347777777776 679999999999 899999998876
No 490
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=81.11 E-value=1.6 Score=33.61 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=27.7
Q ss_pred CHHHHH-HHHHHHHc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 34 THEDMD-AALEALRA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 34 t~e~~~-~AI~~~~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+.++ .|++.+.+ .+.|+++||++.||+++|||+...
T Consensus 18 ~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (208)
T 3cwr_A 18 VRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFAS 59 (208)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHHcC
Confidence 444453 44445544 358999999999999999998744
No 491
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=81.11 E-value=2.9 Score=31.13 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 33 WTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 33 yt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
.|..+..-.......+++++.++|+.+||+++|+.+.+.++.
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455554222222356789999999999999999999999863
No 492
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=81.09 E-value=1.8 Score=40.19 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=60.3
Q ss_pred HHHHHHH-HcCCCCHHHHHHHcCCChhhHHHHHHHhCCCCCCCC---CCCCCC----cHHHH-HHHHHHHhhcchhhhhh
Q psy17316 39 DAALEAL-RAGQMSLTKASVSYGIPSTTLWQRAHRLGIHTPKKE---GPTKSW----NEEIL-NVALDALRAGSISANKA 109 (229)
Q Consensus 39 ~~AI~~~-~~g~~S~~~aA~~~gIp~sTL~~~i~~~gi~~~~~~---~~~k~~----s~e~~-~~a~~ll~~G~ls~~~~ 109 (229)
...++.+ .++.+|..++|+.+||+..||++-++..+-..+... ++.+.| ++... +...
T Consensus 21 ~~IL~~L~~~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy~L~~~~~~~~~~~~------------- 87 (485)
T 3sqn_A 21 IRLLEQLLNVPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIRLRNQGNAQTNELW------------- 87 (485)
T ss_dssp HHHHHHHHHCCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEEEEEEC---CTHHHH-------------
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEEEEecCcHHHHHHHH-------------
Confidence 3444433 366799999999999999999999987543321110 111222 11100 0000
Q ss_pred hhccCCCCCCCHHH-HHHHHH-HHHcCCCCHHHHHHHhCCChHHHHHH-------HHHhCCccc
Q psy17316 110 SKAYGPTKSWNEEI-LNVALD-ALRAGSISANKASKAYGIPSSTLYKI-------ARKEGIRLA 164 (229)
Q Consensus 110 ~~~~G~~~kYs~e~-k~~AV~-~~~~g~~S~~~~a~k~gIp~sTL~~~-------ik~~g~k~~ 164 (229)
..++++. ....+. .+.++..++.++|..+.||++|+.+- ++++++...
T Consensus 88 -------~~~~~~eR~~~Il~~LL~~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~y~L~L~ 144 (485)
T 3sqn_A 88 -------SLFLPQSISIQLLKELLFTKELVTTSFLSTSGVSYETLKRHIKKMNQALRDFHLTIQ 144 (485)
T ss_dssp -------HHHGGGSHHHHHHHHHHHCSEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred -------HhcCHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCeEEE
Confidence 0112222 222333 33456689999999999999996554 445666554
No 493
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=81.09 E-value=1.5 Score=34.30 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=25.6
Q ss_pred HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+. +.|+.+||++.||+++|||+...
T Consensus 30 ~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 65 (214)
T 2zb9_A 30 HAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWP 65 (214)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCC
Confidence 3455555543 58999999999999999998744
No 494
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=81.07 E-value=1.5 Score=34.26 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHH-HHHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 36 EDM-DAALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 36 e~~-~~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
+.+ ..|++.+.+. +.|+++||++.||+++|||+...
T Consensus 6 ~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~ 45 (212)
T 3rh2_A 6 DKIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYHFR 45 (212)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 444 4555555543 58999999999999999998643
No 495
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=81.06 E-value=1.2 Score=34.31 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=24.9
Q ss_pred HHHHHHHHc-C--CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 39 DAALEALRA-G--QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 39 ~~AI~~~~~-g--~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
..|++.+.+ | +.|+++||++.||+++|||+...
T Consensus 18 ~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 53 (203)
T 3b81_A 18 NKIWDIFIANGYENTTLAFIINKLGISKGALYHYFS 53 (203)
T ss_dssp HHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHcCcccCcHHHHHHHhCCCchhHHHHcC
Confidence 344444443 3 58999999999999999998643
No 496
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=80.99 E-value=2.1 Score=33.33 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=29.1
Q ss_pred CCHHHH-HHHHHHHHc---CCCCHHHHHHHcCCChhhHHHHHH
Q psy17316 33 WTHEDM-DAALEALRA---GQMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 33 yt~e~~-~~AI~~~~~---g~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
-+.+.+ ..|++.+.+ .+.|+.+||++.||+++|||+...
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF~ 52 (197)
T 2f07_A 10 GKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFS 52 (197)
T ss_dssp SHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHhCC
Confidence 344555 455555654 357999999999999999999754
No 497
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=80.98 E-value=1.6 Score=30.71 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=27.6
Q ss_pred HHHHHHH-cC-CCCHHHHHHHcCCChhh-HHHHHHHhC
Q psy17316 40 AALEALR-AG-QMSLTKASVSYGIPSTT-LWQRAHRLG 74 (229)
Q Consensus 40 ~AI~~~~-~g-~~S~~~aA~~~gIp~sT-L~~~i~~~g 74 (229)
.++..+. +| ++++.++|+.+||+++| +.+.++++.
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le 56 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLI 56 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3444443 45 79999999999999999 999988763
No 498
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=80.95 E-value=1.5 Score=34.16 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=28.8
Q ss_pred CCHHHHH-HHHHHHHcC---CCCHHHHHHHcCCChhhHHHHHH
Q psy17316 33 WTHEDMD-AALEALRAG---QMSLTKASVSYGIPSTTLWQRAH 71 (229)
Q Consensus 33 yt~e~~~-~AI~~~~~g---~~S~~~aA~~~gIp~sTL~~~i~ 71 (229)
-+.+.++ .|++.+.+. +.|+++||++.||+++|||+...
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (216)
T 3s5r_A 10 NTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFK 52 (216)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHHcC
Confidence 3455554 455555543 58999999999999999999744
No 499
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=80.84 E-value=3.5 Score=31.42 Aligned_cols=43 Identities=12% Similarity=-0.090 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 32 TWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 32 kyt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
..|..+..-.......|++++.++|+.+||+++|+.+.+.+..
T Consensus 43 glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 85 (162)
T 3k0l_A 43 EISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL 85 (162)
T ss_dssp TCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555554322223346899999999999999999999999863
No 500
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=80.80 E-value=2.9 Score=30.66 Aligned_cols=42 Identities=12% Similarity=0.003 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHcCCChhhHHHHHHHhC
Q psy17316 33 WTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLG 74 (229)
Q Consensus 33 yt~e~~~~AI~~~~~g~~S~~~aA~~~gIp~sTL~~~i~~~g 74 (229)
.|..+..-......++++++.++|+.+||+++|+.+.+++..
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 455554322222346889999999999999999999999863
Done!