RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17316
(229 letters)
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
a.4.1.15
Length = 70
Score = 54.4 bits (130), Expect = 2e-10
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 106 ANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTL-YKIARKEGIRLA 164
+ S G + +N EIL A+ + +G +S +KA YGIP STL YK+ + G
Sbjct: 1 GSSGSSGRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKN 60
Query: 165 QP 166
P
Sbjct: 61 PP 62
Score = 47.5 bits (112), Expect = 7e-08
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 30 TKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLWQRAHRLGIHT 77
+ + E ++ A+ + +G+MS++KA YGIP +TL +
Sbjct: 11 YRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTL 58
Score = 41.3 bits (96), Expect = 1e-05
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 174 WKPEDLEIALEGIRSGQTTVQRASAEYGIPSGTLYGRCK-LSRSTPRPPPGNLKTSR 229
+ E LE A+ + SG+ +V +A + YGIP TL + K + PP +K R
Sbjct: 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMR 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 1e-07
Identities = 51/252 (20%), Positives = 82/252 (32%), Gaps = 81/252 (32%)
Query: 2 MITPELLGLLPSS--NYSDGETDKAGSLTV------TKTWT--HEDMDAALEAL-----R 46
++T +LLG P +Y G T + L T +W + A+ L R
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 47 A----GQMSLTKASVSY------GIPSTTLWQRAHRLGIHTPKKEGPTKSWNEEIL---N 93
SL + + G+PS L I T+ ++ + N
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPS-------PMLSI-----SNLTQEQVQDYVNKTN 357
Query: 94 VALDALRAGSIS-ANKASKAY---GPTKSWNEEILNVALDALRAGSISANKASKAYGIPS 149
L A + IS N +K GP +S LN+ L +A S S+ IP
Sbjct: 358 SHLPAGKQVEISLVN-GAKNLVVSGPPQSL--YGLNLTLRKAKAPS--GLDQSR---IPF 409
Query: 150 STLYKIARKEGI-----RLAQPFNASP-----------------TAWKPEDLEIALEGIR 187
S RK +A PF+ S ++ +D++I +
Sbjct: 410 S-----ERKLKFSNRFLPVASPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 188 SGQTTVQRASAE 199
G ++ S
Sbjct: 464 DGS-DLRVLSGS 474
Score = 42.3 bits (99), Expect = 9e-05
Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 58/175 (33%)
Query: 38 MDAALEALRAGQMSLTKASVSYGIP-STTLWQRAHRLGIHTPKKEGPTKSWNEEILNVAL 96
MDA + R ++L+ S+ + + T + A +L +E K E A
Sbjct: 1 MDAY--STRP--LTLSHGSLEHVLLVPTASFFIASQL------QEQFNKILPEPTEGFAA 50
Query: 97 DA-------LRA---GSISANKASKAYGPTKSWNEEILNVALDA-----LRAGSISANKA 141
D L G +S+ G +++LN+ L L I A A
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQF----DQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 142 S----------------KAY-------GIP-----SSTLYKIARKEGIRLAQPFN 168
K Y P +S L++ + +L F
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2,
protein struct initiative, northeast structural genomics
consortium, NESG; 1.63A {Escherichia coli} SCOP:
a.35.1.3 PDB: 2icp_A
Length = 94
Score = 29.9 bits (68), Expect = 0.18
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 122 EILNVALDALRAGSISANKASKAYGIPSSTLYKIAR-KEGI------RLAQPFNASPTAW 174
+I+ +LD L ++S + ++A I ST ++ K + +L+ +SP W
Sbjct: 11 DIIQESLDEL---NVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMW 67
>3cec_A Putative antidote protein of plasmid maintenance; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE; 1.60A {Nostoc
punctiforme}
Length = 104
Score = 30.0 bits (68), Expect = 0.21
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 122 EILNVALDALRAGSISANKASKAYGIPSSTLYKIAR-KEGI------RLAQPFNASPTAW 174
E++ LD L I+ ++ G+ + T+ ++ + I RL + P W
Sbjct: 21 EVIADILDDL---DINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLW 77
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific
recombinase, resolvase, DNA-binding protein, protein-DNA
complex, DNA integration, DNA invertase, DNA
recombination; 3.20A {Staphylococcus aureus}
Length = 209
Score = 31.2 bits (71), Expect = 0.21
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 130 ALRAGSISANKASKAYGIPSSTLYKIARKEGI 161
+ + +K +K I T+Y+I G+
Sbjct: 170 EMLEEGQAISKIAKEVNITRQTVYRIKHDNGL 201
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase,
recombination; 3.80A {Enterobacteria phage MU}
Length = 193
Score = 30.6 bits (70), Expect = 0.23
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 100 RAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARKE 159
AG +A + G + A L G I + + Y + STLYK +
Sbjct: 124 MAGLAAARNKGRIGGRPPKLTKAEWEQAGRLLAQG-IPRKQVALIYDVALSTLYKKHPAK 182
Query: 160 GIRLAQP 166
+
Sbjct: 183 RAHIEND 189
>3qph_A TRMB, A global transcription regulator; transcriptional regulator;
HET: SUC; 2.99A {Pyrococcus furiosus}
Length = 342
Score = 30.5 bits (68), Expect = 0.38
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 131 LRAGSISANKASKAYGIPSSTLYKIARK-EGIRLAQPFNASPTAWKPEDLEIALEGIRSG 189
L G +A + S GIP + +Y + +P + IA +
Sbjct: 28 LVYGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYSPRIAFFRFKKE 87
Query: 190 QTTVQRASAEY 200
+ +
Sbjct: 88 LEDIMKKLEIE 98
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical
protein, JW0472, structural genomics, NPPSFA; 2.25A
{Escherichia coli}
Length = 113
Score = 28.6 bits (64), Expect = 0.66
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 122 EILNVALDALRAGSISANKASKAYGIPSSTLYKIAR-KEGI------RLAQPFNASPTAW 174
+IL + L + N+ ++ + +++ + + RLA+ F+ + W
Sbjct: 13 DIL--LYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFW 70
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element
functions, DNA binding P; 2.00A {Coxiella burnetii}
Length = 104
Score = 28.1 bits (63), Expect = 1.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 136 ISANKASKAYGIPSSTLYKIAR-KEGI------RLAQPFNASPTAW 174
+SAN+ +K IP++ + I I RLA+ F +P W
Sbjct: 28 MSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFW 73
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A*
3tys_A*
Length = 88
Score = 27.4 bits (61), Expect = 1.3
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 136 ISANKASKAYGIPSSTLYKIARKEGIRL 163
+ + +A G+ ST K+ + E + L
Sbjct: 38 MKKGELREAVGVSKSTFAKLGKNENVSL 65
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU
genomics, PSI-2, protein structure initiative; 2.29A
{Lactobacillus brevis atcc 367}
Length = 296
Score = 27.9 bits (63), Expect = 2.5
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 104 ISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASK----AYGIPSSTLYKIA 156
+ N A T E ++V +D L A N A K G +Y+
Sbjct: 234 VGGNPAPTTAATTAVDLSEPIDVQVDRLIAAGEKPNDAIKEVAKLRGAKKQEIYRQY 290
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 27.7 bits (61), Expect = 2.8
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 163 LAQPFNASPTAWKPEDLEIALEGIRSGQTTV 193
+ P+ AS + E+A +GI G++ V
Sbjct: 1 MTMPYYASAEQIMRDRSELARKGIARGRSVV 31
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex,
double helix, overhanging base, DNA binding protein/DNA
complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1
PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Length = 183
Score = 26.8 bits (60), Expect = 4.8
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 100 RAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARK 158
G A +G + + + A+ + + A+ SK I ST+YK+ +
Sbjct: 127 NEGRQEAMAKGVVFGRKRKIDRD----AVLNMWQQGLGASHISKTMNIARSTVYKVINE 181
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+
ATPase, response regulator, transcriptional activator,
ATP-binding; 2.25A {Aquifex aeolicus}
Length = 63
Score = 25.0 bits (55), Expect = 5.2
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 134 GSISANKASKAYGIPSSTLYKIARKEGIRL 163
+ + ++ GI S LY+ + IR+
Sbjct: 33 YDLK--RTAEEIGIDLSNLYRKIKSLNIRV 60
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 26.8 bits (59), Expect = 5.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 163 LAQPFNASPTAWKPEDLEIALEGIRSGQTTV 193
++ P+ SP E E+A +GI ++ V
Sbjct: 1 MSFPYFISPEQAMRERSELARKGIARAKSVV 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; SWI/SNF complex 155 kDa
subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Length = 79
Score = 25.2 bits (55), Expect = 6.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 14 SNYSDGETDKAGSLTVTKTWTHEDMDAALEALR 46
S+ S G K+ + + WT ++ LEAL
Sbjct: 2 SSGSSGTLAKSKGASAGREWTEQETLLLLEALE 34
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 26.4 bits (59), Expect = 7.9
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 151 TLYKIARKEGIRL--AQPFNASPTAWKPEDLEIALEGIRSGQT--------TVQRASA 198
TL KI+ ++ ++ + F W E + E T +Q AS+
Sbjct: 51 TL-KISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASS 107
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix
prnai nucleotide-binding domain; HET: MSE; 1.80A
{Sulfolobus solfataricus}
Length = 244
Score = 26.4 bits (57), Expect = 9.3
Identities = 4/58 (6%), Positives = 15/58 (25%)
Query: 101 AGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIARK 158
+ + + + ++ E + + + +K TL +
Sbjct: 132 GSRVISFNDNTIRALMRDYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAE 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.126 0.365
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,509,663
Number of extensions: 204377
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 30
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.4 bits)