RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17316
(229 letters)
>d2coba1 a.4.1.15 (A:8-70) Ligand-dependent corepressor (LCoR)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 37.7 bits (87), Expect = 8e-05
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 31 KTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTL-WQRAHRLG-IHTPKKEGP 83
+ + E ++ A+ + +G+MS++KA YGIP +TL ++ RLG + P K+
Sbjct: 5 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKM 59
Score = 35.8 bits (82), Expect = 3e-04
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 114 GPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTL-YKIARKEG 160
G + +N EIL A+ + +G +S +KA YGIP STL YK+ + G
Sbjct: 2 GRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLG 49
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 61
Score = 25.5 bits (56), Expect = 1.4
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 134 GSISANKASKAYGIPSSTLYKIARKEGIR 162
S K ++ G+ + + ++ GI
Sbjct: 34 PSTR--KLAQRLGVSHTAIANKLKQYGIG 60
Score = 23.6 bits (51), Expect = 6.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 51 SLTKASVSYGIPSTTLWQRAHRLGI 75
S K + G+ T + + + GI
Sbjct: 35 STRKLAQRLGVSHTAIANKLKQYGI 59
>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
(Rhodosporidium toruloides) [TaxId: 5286]}
Length = 678
Score = 27.7 bits (61), Expect = 1.5
Identities = 13/98 (13%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 96 LDALRAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKI 155
++ L + S+S + + + + + +++ A + LY
Sbjct: 571 VEVLSSTSLSLAAVNAWKVAAAESAISLTRQVRETFWSAASTSSPALSYLSPRTQILYAF 630
Query: 156 ARKE-GIRLAQPFNASPTAWKP--EDLEIALEGIRSGQ 190
R+E G++ + ++ E I+SG+
Sbjct: 631 VREELGVKARRGDVFLGKQEVTIGSNVSKIYEAIKSGR 668
>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain
{Clostridium perfringens, different strains [TaxId:
1502]}
Length = 249
Score = 27.3 bits (60), Expect = 1.6
Identities = 14/64 (21%), Positives = 21/64 (32%)
Query: 98 ALRAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIAR 157
+ SI N SK + N EIL + L+ GS + AY + +
Sbjct: 15 VTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDT 74
Query: 158 KEGI 161
Sbjct: 75 DNNF 78
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Length = 74
Score = 24.7 bits (54), Expect = 3.2
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 30 TKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTLW 67
+ W D+ A L+ + +SL+ S +G TTL
Sbjct: 6 ARDWHRADVIAGLK--KRK-LSLSALSRQFGYAPTTLA 40
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase
{Pseudaminobacter salicylatoxidans [TaxId: 93369]}
Length = 351
Score = 26.3 bits (57), Expect = 3.7
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 66 LWQRAHRLGIHTPKKEGPTKSWN-EEILNVALDALRAGSISAN 107
LW + L PK + W +L +A + +
Sbjct: 22 LWTQLGDLMPIHPKSKAVPHVWKWSTLLRLARKSGELVPVGRG 64
>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC
{Escherichia coli [TaxId: 562]}
Length = 354
Score = 26.3 bits (56), Expect = 3.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 34 THEDMDAALEALRAGQ 49
T E+ ++ALRA Q
Sbjct: 338 TREESQRVIDALRAEQ 353
>d1qsaa2 d.2.1.6 (A:451-618) 70 kDa soluble lytic transglycosylase,
SLT70 {Escherichia coli [TaxId: 562]}
Length = 168
Score = 25.6 bits (55), Expect = 4.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 139 NKASKAYGIPSSTLYKIARKE 159
+ + IP S IAR+E
Sbjct: 8 KRYTSGKEIPQSYAMAIARQE 28
>d1cy9a_ e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 25.7 bits (55), Expect = 4.4
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 10/110 (9%)
Query: 77 TPKKEGPTKSWNEEILNVALDALRAGSISANKASKAYGPTKSWNEEILNVALDALRAGSI 136
T + + P + N+E A+ L S + +K I + A
Sbjct: 26 THQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQA------ 79
Query: 137 SANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWKPEDLEIALEGI 186
AS G +A++ + + + +D + G
Sbjct: 80 ----ASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGY 125
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 25.6 bits (55), Expect = 5.5
Identities = 5/40 (12%), Positives = 17/40 (42%)
Query: 136 ISANKASKAYGIPSSTLYKIARKEGIRLAQPFNASPTAWK 175
++ N ++ G+ + A+++ +L T ++
Sbjct: 38 VTCNYEARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYR 77
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 93
Score = 24.3 bits (53), Expect = 6.1
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 30 TKTWTHEDMDAALEALRAGQMSLTKASVSYGIPSTTL--WQRA 70
T+ W A + + G ++L +A +YG+ W A
Sbjct: 31 TRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSA 73
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 389
Score = 25.3 bits (54), Expect = 8.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 136 ISANKASKAYGIPSSTLYKIARK 158
I+ + A++ YGI + A K
Sbjct: 60 IAVSYAARKYGISRMDTIQEALK 82
>d1olpa1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain
{Clostridium absonum [TaxId: 29369]}
Length = 249
Score = 24.6 bits (53), Expect = 9.6
Identities = 10/64 (15%), Positives = 18/64 (28%)
Query: 98 ALRAGSISANKASKAYGPTKSWNEEILNVALDALRAGSISANKASKAYGIPSSTLYKIAR 157
+A + + SK + IL L + GS + AY + +
Sbjct: 15 VTQAIEMLKHDLSKDEPEAIRNDLSILEKNLHKFQLGSTFPDYDPNAYSLYQDHFWDPDT 74
Query: 158 KEGI 161
Sbjct: 75 DHNF 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.126 0.365
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 829,921
Number of extensions: 35887
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 20
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.9 bits)