Query psy17322
Match_columns 414
No_of_seqs 326 out of 1829
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:11:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4347|consensus 100.0 7.9E-63 1.7E-67 501.9 15.3 351 44-414 1-377 (671)
2 KOG2058|consensus 100.0 2.3E-43 5E-48 353.9 15.9 205 201-414 119-335 (436)
3 smart00164 TBC Domain in Tre-2 100.0 1E-36 2.2E-41 281.3 14.9 177 232-413 2-184 (199)
4 COG5210 GTPase-activating prot 100.0 1.5E-34 3.2E-39 302.3 15.7 212 201-414 179-395 (496)
5 KOG2222|consensus 100.0 1.7E-31 3.6E-36 263.2 12.2 184 222-410 157-345 (848)
6 KOG2223|consensus 100.0 3.6E-29 7.7E-34 244.8 12.5 201 208-413 277-491 (586)
7 PF00566 RabGAP-TBC: Rab-GTPas 100.0 2.1E-28 4.5E-33 227.3 15.1 175 237-413 1-181 (214)
8 KOG2221|consensus 100.0 3.3E-29 7.1E-34 226.3 3.9 195 200-402 70-267 (267)
9 KOG4567|consensus 99.9 1.1E-25 2.3E-30 213.2 13.3 203 206-412 10-294 (370)
10 KOG1092|consensus 99.9 3.8E-25 8.3E-30 216.7 8.9 191 222-413 176-402 (484)
11 KOG4436|consensus 99.9 6.4E-24 1.4E-28 220.7 15.1 199 204-412 548-757 (948)
12 KOG2224|consensus 99.9 3.3E-22 7.1E-27 195.9 8.8 212 198-412 400-660 (781)
13 KOG1093|consensus 99.9 1.7E-21 3.7E-26 197.0 13.8 178 224-412 345-526 (725)
14 KOG1102|consensus 99.9 4.7E-22 1E-26 201.7 9.9 202 202-413 114-320 (397)
15 KOG2197|consensus 99.8 7.4E-19 1.6E-23 181.9 6.7 206 203-412 148-372 (488)
16 KOG2595|consensus 99.7 1.9E-17 4.2E-22 159.0 8.3 177 224-411 48-231 (395)
17 PF02893 GRAM: GRAM domain; I 99.7 4.3E-17 9.2E-22 125.4 3.8 66 54-124 1-68 (69)
18 KOG4436|consensus 99.6 1.9E-15 4.1E-20 158.1 11.2 187 223-413 173-372 (948)
19 KOG1091|consensus 99.5 9.3E-15 2E-19 148.4 6.9 133 280-412 104-294 (625)
20 smart00568 GRAM domain in gluc 99.5 3.7E-14 7.9E-19 106.3 6.2 58 61-124 1-60 (61)
21 KOG1032|consensus 99.4 1.7E-13 3.7E-18 144.7 4.5 99 51-164 104-209 (590)
22 KOG3636|consensus 98.7 5.2E-08 1.1E-12 97.3 8.7 158 234-412 36-199 (669)
23 KOG2801|consensus 98.0 3.7E-05 8.1E-10 73.6 9.6 178 223-407 31-218 (559)
24 KOG1648|consensus 97.2 3.6E-05 7.8E-10 78.2 -2.1 192 197-411 525-730 (813)
25 PF14844 PH_BEACH: PH domain a 96.4 0.006 1.3E-07 50.5 5.3 86 67-163 1-105 (106)
26 PF14470 bPH_3: Bacterial PH d 95.3 0.23 4.9E-06 39.8 10.1 88 62-163 1-94 (96)
27 PF11605 Vps36_ESCRT-II: Vacuo 90.0 0.94 2E-05 36.5 5.9 62 62-126 10-75 (89)
28 cd01201 Neurobeachin Neurobeac 86.9 1.8 3.9E-05 36.1 5.7 84 66-163 1-102 (108)
29 PF11696 DUF3292: Protein of u 80.6 3.5 7.6E-05 44.5 6.2 78 71-165 520-633 (642)
30 KOG2224|consensus 79.3 0.69 1.5E-05 47.1 0.4 33 321-353 566-599 (781)
31 PF06713 bPH_4: Bacterial PH d 77.7 9.1 0.0002 29.4 6.2 59 92-165 6-72 (74)
32 PF08567 TFIIH_BTF_p62_N: TFII 76.3 8.3 0.00018 30.2 5.7 62 85-151 12-78 (79)
33 KOG1032|consensus 75.6 1.3 2.9E-05 47.7 1.3 106 47-156 244-363 (590)
34 KOG2197|consensus 71.6 1.6 3.4E-05 46.2 0.7 48 203-252 48-95 (488)
35 PF14961 BROMI: Broad-minded p 69.1 14 0.00031 42.6 7.4 106 305-411 1084-1209(1296)
36 PF08512 Rtt106: Histone chape 68.2 20 0.00043 29.0 6.3 70 85-164 11-86 (95)
37 PF10815 ComZ: ComZ; InterPro 66.1 5.5 0.00012 28.7 2.2 39 372-410 5-44 (56)
38 cd01244 PH_RasGAP_CG9209 RAS_G 56.5 66 0.0014 26.2 7.4 65 89-164 26-96 (98)
39 KOG4471|consensus 54.1 19 0.00041 38.6 4.7 75 53-135 27-109 (717)
40 PF03703 bPH_2: Bacterial PH d 47.8 71 0.0015 23.9 6.1 67 89-162 6-79 (80)
41 PF05391 Lsm_interact: Lsm int 45.4 11 0.00024 21.9 0.8 11 50-60 9-19 (21)
42 PF04283 CheF-arch: Chemotaxis 41.3 1E+02 0.0022 29.1 7.1 34 82-118 23-56 (221)
43 smart00683 DM16 Repeats in sea 39.2 89 0.0019 22.8 4.9 37 82-118 16-52 (55)
44 PF06115 DUF956: Domain of unk 38.0 71 0.0015 27.1 4.9 66 82-158 20-90 (118)
45 cd01264 PH_melted Melted pleck 29.2 1.5E+02 0.0033 24.3 5.5 44 89-135 24-76 (101)
46 PRK11798 ClpXP protease specif 26.1 60 0.0013 28.3 2.6 38 85-122 57-95 (138)
47 TIGR02433 lysidine_TilS_C tRNA 24.5 19 0.00041 24.7 -0.6 24 224-247 20-44 (47)
48 PF04386 SspB: Stringent starv 24.2 1.2E+02 0.0025 26.9 4.2 33 86-118 66-99 (155)
49 PF03517 Voldacs: Regulator of 23.4 94 0.002 26.8 3.4 30 87-116 1-30 (135)
50 PHA02150 hypothetical protein 21.4 63 0.0014 24.3 1.6 51 54-106 21-71 (77)
51 cd01220 PH_CDEP Chondrocyte-de 20.8 4.6E+02 0.0099 21.2 7.7 68 87-164 19-94 (99)
No 1
>KOG4347|consensus
Probab=100.00 E-value=7.9e-63 Score=501.88 Aligned_cols=351 Identities=41% Similarity=0.664 Sum_probs=322.6
Q ss_pred ccccchhcccHHHHhhcCCCCCCccceeEEEEEEccccccccceeEeeccceeEeeecCCCeeEEEEecccccccceeec
Q psy17322 44 TRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDK 123 (414)
Q Consensus 44 ~~~l~~~~~~~~f~~~F~lP~~E~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek 123 (414)
||++++|.++++| .+|+|| |+|+++..|.+|.||++.+.+|+||+|+||+||.|...+.|++++|+.+|+ +|||
T Consensus 1 krdl~ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~c~~~~Pl~~vr---~ve~ 74 (671)
T KOG4347|consen 1 KRDLDARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWLCSFITPLLAVR---SVER 74 (671)
T ss_pred Ccchhhhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcccceEeeehhhhh---hhhc
Confidence 6899999999999 999999 999999999999999999999999999999999999999999999999999 8888
Q ss_pred cCC----CCcEEEEEccCcccccCcceEEEecccchHHHHHHHHhhC------CC-------CCCCC--------C-Ccc
Q psy17322 124 DME----SKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKKLSQ------SS-------ISSST--------S-SET 177 (414)
Q Consensus 124 ~~~----~~~i~i~t~~~~~~~~~~~~~~~f~~~~~rd~~~~~l~~~------~~-------~~~~~--------~-~~~ 177 (414)
.+. ++.|.+.|. +...+.|.++.+|+.+...+..- .+ .++.| + .++
T Consensus 75 ~~~ss~~~~~i~~~~~--------~~~~~~f~~~~~r~~~~~k~~~~~~~~~~~~~~e~a~~~~~~Se~~~~~a~~~~~~ 146 (671)
T KOG4347|consen 75 LDDSSLFTQLISLFTS--------NMVGMRFGGLTERLKLLSKLHLPPAREEVESAREAAKYDTLSSEEFSEQALPSEEA 146 (671)
T ss_pred cCccccchhhhHHhhc--------CcceEEecchhhHHHHHHHHhchHhhhhccchhhhhhcchhhhhhhhhhccCCccc
Confidence 874 788999999 69999999999999888777731 11 01111 0 112
Q ss_pred cccCCcccccccCCCCCccccchhhchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhhhcC
Q psy17322 178 AEQIQGPLLNLFKPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRD 257 (414)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~~~~ 257 (414)
......+++..++++.++.. .++..|++.|+++|.++|+++.+++..+++++++.|+|++.|+++|..++|+...+..+
T Consensus 147 ~~~~~~~~~~~~~~~~d~~~-lre~~k~k~W~~~f~~~G~~~~~~qt~~~~Klv~~gipe~~rgeiW~l~sGav~~~l~~ 225 (671)
T KOG4347|consen 147 SGESALGFGEKGKYKIDPRA-LREWAKEKFWKKYFIKDGPNMNQIQTILLRKLLYNGFPEDPRGEIWYLASGAVASLLLN 225 (671)
T ss_pred cccchhcccccCCCCCChHH-HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhcCCChHHHHHHhhhHHHHHhhcC
Confidence 22345677888888877765 88999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhCCCCCcchhhHHHHhhhhhcCCCCCCccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhc
Q psy17322 258 PDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIY 337 (414)
Q Consensus 258 ~~~Y~~l~~~l~~~~~~~~~~~~~~qIekDv~RT~p~~~~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~ 337 (414)
+++|.++ +.+..+..+. +.++|++|++|+.|+|+.||.+.|+..|+|||.||++.||+|||||.||.+++.+|++
T Consensus 226 ~Geygkl---l~~~~G~~~~--a~eEIE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~ 300 (671)
T KOG4347|consen 226 PGEYGKL---LHSVTGKRSV--ATEEIEPDLGRSLPEHPAFQSEPGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLF 300 (671)
T ss_pred cHHhhhh---hhcccCCccc--ccccccCCCCCCCCcchhhhCCCchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhh
Confidence 9999999 9888888777 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCCchHhhHHHHHHhcCCCCCCCC
Q psy17322 338 TSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDVKST 414 (414)
Q Consensus 338 ~~Ee~aFw~l~~L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i~~~~~~~WfltLF~~~lP~dT 414 (414)
+.||+|||++++++++++|+||+..+.|...+|.+|+.|++.++|.|++|+..+|+..++.++||+|+|...+|.++
T Consensus 301 ~~EEeafwll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~~l~~Vsl~WFlslFls~m~le~ 377 (671)
T KOG4347|consen 301 CKEEEAFWLLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLGQLSTVSLSWFLSLFLSLMPLEY 377 (671)
T ss_pred hccchHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhcccceEeeHHHHHHHHHHcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG2058|consensus
Probab=100.00 E-value=2.3e-43 Score=353.86 Aligned_cols=205 Identities=37% Similarity=0.709 Sum_probs=181.1
Q ss_pred hhchHHHHHHhhhhc------CCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhhhcC-hhHHHHHHHHHHhhCC
Q psy17322 201 EEVKNKQWELHFNRY------KRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRD-PDLYAAMRRRVQNERP 273 (414)
Q Consensus 201 e~~~~~~W~~~~~~~------~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~~~~-~~~Y~~l~~~l~~~~~ 273 (414)
+..+...|...+... ... ...++++++++|+|||.++|+.||+.++|.. +..+ ++.|+.+ +.....
T Consensus 119 ~~r~~~~~~l~~~~~~~~~~~~~~--~~~s~elk~liRkGiP~~~R~~VW~~~~g~~--~~~~~~~~yq~l---l~~~~~ 191 (436)
T KOG2058|consen 119 EERRQLRWELELQSNIKLHSPNDF--PPRSDELKRLIRKGIPPELRGEVWWVLSGAR--RQLNYPGYYQEL---LRKGDE 191 (436)
T ss_pred hhhHHHHHHHHhhhhhcccccccc--cCCcHHHHHHHHcCCChhhhhHHHHHHhcch--hhccCchhHHHH---HhcCCC
Confidence 344567788777764 111 2368999999999999999999999999932 2333 8999999 776554
Q ss_pred CCCcchhhHHHHhhhhhcCCCC-CCccchh--hHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCC-HHHHHHHHHH
Q psy17322 274 NSNLSLSCDEIERDLHRSLPEH-PAFQCEI--GINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTS-EQEAFWLLVC 349 (414)
Q Consensus 274 ~~~~~~~~~qIekDv~RT~p~~-~~F~~~~--g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~-Ee~aFw~l~~ 349 (414)
..+. +.++|+.|+.||||++ +.|..++ ++++|+|||.||+++||+||||||||++||++|++|+ ||+|||||+.
T Consensus 192 ~~~~--~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~ 269 (436)
T KOG2058|consen 192 KKSP--VVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVA 269 (436)
T ss_pred ccch--HHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4444 8999999999999999 7888654 4899999999999999999999999999999999998 9999999999
Q ss_pred HHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCCCC
Q psy17322 350 LCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVKST 414 (414)
Q Consensus 350 L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~dT 414 (414)
++++++|.||++++.|.++++.||+.|++..+|+|+.||..+++ .++++++||+|+|++++|.+|
T Consensus 270 iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t 335 (436)
T KOG2058|consen 270 LIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSET 335 (436)
T ss_pred HHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHH
Confidence 99999999999999999999999999999999999999999999 788999999999999999876
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=1e-36 Score=281.29 Aligned_cols=177 Identities=36% Similarity=0.660 Sum_probs=157.5
Q ss_pred HcCCCchHHHHHHHHhccchhhhhc-ChhHHHHHHHHHHhhCCCCCcchhhHHHHhhhhhcCCCCCCccch--hhHHHHH
Q psy17322 232 LRGVPDAKRREIWLTCSGALNEMLR-DPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCE--IGINALR 308 (414)
Q Consensus 232 ~~GIP~~lR~~vW~~llg~~~~~~~-~~~~Y~~l~~~l~~~~~~~~~~~~~~qIekDv~RT~p~~~~F~~~--~g~~~L~ 308 (414)
++|||+++|+.||+.++|+...... .++.|+++ ++........ ..++|++||.||+|+++.|+.. .+++.|+
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l---~~~~~~~~~~--~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~ 76 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRL---LKETAPKDKS--IVHQIEKDLRRTFPEHSFFQDKEGPGQESLR 76 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhcccchHHHHH---HHhhcCCChh--hHHHHhcccCCCCCCchhhcCCCcccHHHHH
Confidence 6899999999999999999765433 47899999 5443332222 5689999999999999999864 5789999
Q ss_pred hHhhhhhccCCCCCcccchhHHHHHHHhcC-CHHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHH
Q psy17322 309 RVLTAYAAKNPQIGYCQAMNIVTSVFLIYT-SEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEK 387 (414)
Q Consensus 309 rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-~Ee~aFw~l~~L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~h 387 (414)
|||.+|+.+||++|||||||+|||+||+++ +|++|||||+++|+++.+.+|.+++.++...+.+++.++++++|+||+|
T Consensus 77 ~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~ 156 (199)
T smart00164 77 RVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKH 156 (199)
T ss_pred HHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 999999999999999999999999999999 5999999999999999888889999999999999999999999999999
Q ss_pred HHH-cCC-chHhhHHHHHHhcCCCCCCC
Q psy17322 388 LQN-MGM-IRMISLSWFLTIFLSLDVKS 413 (414)
Q Consensus 388 L~~-~~i-~~~~~~~WfltLF~~~lP~d 413 (414)
|++ .|+ ..+|+++||+|||++.+|.+
T Consensus 157 l~~~~~i~~~~~~~~W~~~lF~~~~~~~ 184 (199)
T smart00164 157 LKDKLGIDPSLYALRWFLTLFARELPLE 184 (199)
T ss_pred HHHhcCCCchhHHHHHHHHHHHhhCCHH
Confidence 996 999 77889999999999999864
No 4
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=302.26 Aligned_cols=212 Identities=32% Similarity=0.558 Sum_probs=189.1
Q ss_pred hhchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhhhcChhHHHHHHHHHHhhCCCCCcchh
Q psy17322 201 EEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLS 280 (414)
Q Consensus 201 e~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~~~ 280 (414)
+......|.+++...+......+..+++.+++.|||+++|+.||..++|+........+.|..+.+........... .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~ 256 (496)
T COG5210 179 ELAADKLWISYLDPNPLSFLPVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERLLNLHREAKIPTQE--I 256 (496)
T ss_pred hhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCchHHHHHHHHHHhcCCCcHH--H
Confidence 45567889999998888666668899999999999999999999999999888888889999994433332222112 6
Q ss_pred hHHHHhhhhhcCCCCCCccchhhHHH--HHhHhhhhhccCCCCCcccchhHHHHHHHhcCC-HHHHHHHHHHHHH-hhcc
Q psy17322 281 CDEIERDLHRSLPEHPAFQCEIGINA--LRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTS-EQEAFWLLVCLCE-SLLP 356 (414)
Q Consensus 281 ~~qIekDv~RT~p~~~~F~~~~g~~~--L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~-Ee~aFw~l~~L~~-~~lp 356 (414)
.++|++||.||+|.+..|+...+... |+|||.||+.+||++|||||||+++|+||++|. |++|||||++||+ .++|
T Consensus 257 ~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~ 336 (496)
T COG5210 257 ISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLP 336 (496)
T ss_pred HHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccch
Confidence 89999999999999999998887766 999999999999999999999999999999998 9999999999999 4599
Q ss_pred cccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCCCC
Q psy17322 357 DYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVKST 414 (414)
Q Consensus 357 ~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~dT 414 (414)
++|..++.|+..++.+++.+++..+|+||+||...|+ ..+|+++||+++|.+.+|.++
T Consensus 337 ~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~ 395 (496)
T COG5210 337 GYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEY 395 (496)
T ss_pred hhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999 888999999999999999753
No 5
>KOG2222|consensus
Probab=99.97 E-value=1.7e-31 Score=263.24 Aligned_cols=184 Identities=33% Similarity=0.679 Sum_probs=168.6
Q ss_pred cChHHHHHHHH-cCCCchHHHHHHHHhccchhhhhcChhHHHHHHHHHHhhCCCCCcchhhHHHHhhhhhcCCCCCCccc
Q psy17322 222 YRTAEMTNLIL-RGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQC 300 (414)
Q Consensus 222 ~~~~klk~li~-~GIP~~lR~~vW~~llg~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~~~~~qIekDv~RT~p~~~~F~~ 300 (414)
.++++++.+++ +|||..+|+.+|+.++|+..........|+.+ +......... .-.||++|+-|++|++.-|..
T Consensus 157 ~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~ae~sy~~i---lk~~andk~~--~~~qiekdllr~lpnn~cf~k 231 (848)
T KOG2222|consen 157 LKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKDAETSYEDI---LKACANDKLM--IGKQIEKDLLRILPNNACFSK 231 (848)
T ss_pred cchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhccccccHHHH---HHHhcccccc--hhHHHHHHHHHhCCCcceeeC
Confidence 47899999998 56999999999999999987777667789999 6655444444 779999999999999999975
Q ss_pred --hhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHHHHHHHhhcc-cccCCChhhhHHHHHHHHHHH
Q psy17322 301 --EIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLP-DYYNTKVVGALVDQGVMNDLI 377 (414)
Q Consensus 301 --~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l~~L~~~~lp-~~f~~~~~gl~~~~~~~~~LL 377 (414)
.+|+..|+|||.+.++..|++||||||..|+|.||++|.||.|||++.++++.++| +||++.+.|++++.++...|+
T Consensus 232 ~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~ee~afwmmaaiiedilp~nfysqtllgiqaderv~~~li 311 (848)
T KOG2222|consen 232 KNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCEEENAFWMMAAIIEDILPANFYSQTLLGIQADERVMHHLI 311 (848)
T ss_pred CCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhcchhHHHHHHHHHHHhcCchhhhhhHhccchhHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999988 799999999999999999999
Q ss_pred HHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCC
Q psy17322 378 EEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLD 410 (414)
Q Consensus 378 ~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~l 410 (414)
+-++|.|-+.|++.++ .+.+++.||+|||++++
T Consensus 312 ~~~l~~ldeal~~~dielslitl~w~ltlf~nv~ 345 (848)
T KOG2222|consen 312 ACHLPDLDEALEDHDIELSLITLHWFLTLFANVF 345 (848)
T ss_pred HhccCchhHHHHhccceeeehHHHHHHHHHHHHH
Confidence 9999999999999999 89999999999999875
No 6
>KOG2223|consensus
Probab=99.96 E-value=3.6e-29 Score=244.83 Aligned_cols=201 Identities=21% Similarity=0.409 Sum_probs=168.1
Q ss_pred HHH-hhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhhhcChhHHHHHHHHHHhh------CCCC-C---
Q psy17322 208 WEL-HFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNE------RPNS-N--- 276 (414)
Q Consensus 208 W~~-~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~~~~~~~Y~~l~~~l~~~------~~~~-~--- 276 (414)
|.+ ++-+|.. |..+..++.+.|.|||+++||+||...+|. ......+.|.....+.++- .+.+ +
T Consensus 277 W~~eILpnWe~---m~~SrR~relWwQGiP~~VRGkvW~laIGN--el~it~elfd~~la~Aker~ak~~aeq~~~sa~~ 351 (586)
T KOG2223|consen 277 WENEILPNWED---MLKSRRVRELWWQGIPPSVRGKVWSLAIGN--ELNITYELFDIALARAKEREAKSLAEQMSNSAAD 351 (586)
T ss_pred HHHHhccchHH---HHhhHHHHHHHHccCChhhcchhhHhhhCc--ccccCHHHHHHHHHHHHHHHHHHHHhhcccchhh
Confidence 664 4445543 557889999999999999999999999994 4455567776664432211 0111 0
Q ss_pred cchhhHHHHhhhhhcCCCCCCccchhh-HHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q psy17322 277 LSLSCDEIERDLHRSLPEHPAFQCEIG-INALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLL 355 (414)
Q Consensus 277 ~~~~~~qIekDv~RT~p~~~~F~~~~g-~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l~~L~~~~l 355 (414)
-+....+|+.|+.||||+..+||.+.. .+.|..+|.||+.+.|+|||+|||++|+|+||+.|++.+||.+|.+|+++-+
T Consensus 352 re~sv~~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd~~~AFiafANLLdkp~ 431 (586)
T KOG2223|consen 352 REASVELIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMDLADAFIAFANLLDKPC 431 (586)
T ss_pred hhcchhheeechhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCCcHHHHHHHHHHhccHH
Confidence 122567899999999999999997644 5899999999999999999999999999999999999999999999999864
Q ss_pred -ccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCCC
Q psy17322 356 -PDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVKS 413 (414)
Q Consensus 356 -p~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~d 413 (414)
..||..+...+..++..|+..+++.+|+|+.||.++++ +..|.++|+.+||+..+|.|
T Consensus 432 q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpld 491 (586)
T KOG2223|consen 432 QQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLD 491 (586)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChH
Confidence 47999999999999999999999999999999999999 88889999999999999976
No 7
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.96 E-value=2.1e-28 Score=227.34 Aligned_cols=175 Identities=27% Similarity=0.540 Sum_probs=140.1
Q ss_pred chHHHHHHHHhccchh--hhhc-C-hhHHHHHHHHHHhhCCCCCcchhhHHHHhhhhhcCCCCCCccchhhHHHHHhHhh
Q psy17322 237 DAKRREIWLTCSGALN--EMLR-D-PDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLT 312 (414)
Q Consensus 237 ~~lR~~vW~~llg~~~--~~~~-~-~~~Y~~l~~~l~~~~~~~~~~~~~~qIekDv~RT~p~~~~F~~~~g~~~L~rIL~ 312 (414)
+++|+.||+.++|... .... . ................... +..++|++|+.||+++...+..+.+++.|.+||.
T Consensus 1 ~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~ 78 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEPNYSNNYQDEKNQWEQIESKSSNSNKLDN--KIFEQIDKDVNRTFPNSFLFKNEQNQKSLERILS 78 (214)
T ss_dssp -CCHHHHHHHHCTCSCHHHHHHHHHHHHHHHHHHHHHHCTSTCH--TCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHccchhhhhhHHHHhhhhhhhhHHHHHhccccc--hHHHHHHHhhhhhcccchhhhhcchHHHHHHHHH
Confidence 3689999999999852 0000 0 0001111000122222222 2689999999999997788888999999999999
Q ss_pred hhhccCCCCCcccchhHHHHHHH-hcCCHHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHc
Q psy17322 313 AYAAKNPQIGYCQAMNIVTSVFL-IYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNM 391 (414)
Q Consensus 313 aya~~np~iGY~QGMn~Iaa~LL-l~~~Ee~aFw~l~~L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~ 391 (414)
+|+.++|++||||||++|+++++ .+.+|++|||||+++++..++++|..+..++...+..++.++++++|+|++||++.
T Consensus 79 ~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~ 158 (214)
T PF00566_consen 79 AYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQL 158 (214)
T ss_dssp HHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHHhhhhhhhhhhhhh
Confidence 99999999999999999999999 67799999999999997778999999999999999999999999999999999999
Q ss_pred CC-chHhhHHHHHHhcCCCCCCC
Q psy17322 392 GM-IRMISLSWFLTIFLSLDVKS 413 (414)
Q Consensus 392 ~i-~~~~~~~WfltLF~~~lP~d 413 (414)
|+ ...++++||+|+|++.+|.+
T Consensus 159 ~~~~~~~~~~w~~~lF~~~l~~~ 181 (214)
T PF00566_consen 159 GVDPEIYAFPWFLTLFSRSLPFD 181 (214)
T ss_dssp T-GGHHHHHHHHHTTTTTTS-HH
T ss_pred hhhhhhhhhhhhHhhcCCcCCHH
Confidence 99 77789999999999999853
No 8
>KOG2221|consensus
Probab=99.95 E-value=3.3e-29 Score=226.34 Aligned_cols=195 Identities=25% Similarity=0.502 Sum_probs=174.3
Q ss_pred hhhchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhhhcChhHHHHHHHHHHhhCCCCCcch
Q psy17322 200 KEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSL 279 (414)
Q Consensus 200 ~e~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~~ 279 (414)
.-+.|+++|-.|+++|..... .+.++++..+++|||+++|++.|..++|+......|+..|.++ .....+..
T Consensus 70 ~L~~ReskwL~mldnw~~~m~-kk~~~ir~rcrkgippslr~Raw~ylsGa~~~~~~np~~~~~~---~~~pG~p~---- 141 (267)
T KOG2221|consen 70 ELRYRESKWLHMLDNWHEEMR-KKQKKIRPRCRKGIPPSLRGRAWRYLSGAPSPPPKNPVVFDEL---GPAPGDPK---- 141 (267)
T ss_pred HHHhhHHHHHHHHHHHHHHHH-hccccccchhhcCCCcccchhHHHhhcCCCCCCCCCcchhhhc---cCCCCCCc----
Confidence 346789999999999876543 2567788899999999999999999999998888899999999 55433322
Q ss_pred hhHHHHhhhhhcCCCCCCccch--hhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHHHHHHHhhccc
Q psy17322 280 SCDEIERDLHRSLPEHPAFQCE--IGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPD 357 (414)
Q Consensus 280 ~~~qIekDv~RT~p~~~~F~~~--~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l~~L~~~~lp~ 357 (414)
..+.|.+|++|-||.|.+|.+. .|++.|+|+|.||..++|+.||||+-.-||+++|+.|++++|||||++++++++++
T Consensus 142 t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp~rdaf~~~vqicekylqg 221 (267)
T KOG2221|consen 142 TAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMPARDAFWCFVQICEKYLQG 221 (267)
T ss_pred chhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcccHHHHHHHHHHHHHHHccc
Confidence 6789999999999999999864 67899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHH
Q psy17322 358 YYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWF 402 (414)
Q Consensus 358 ~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~Wf 402 (414)
||..++..++.+-.++..|+++.+|-.|.||...++ +..|...||
T Consensus 222 y~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 222 YYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred ccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 999999999999999999999999999999999999 445566787
No 9
>KOG4567|consensus
Probab=99.93 E-value=1.1e-25 Score=213.25 Aligned_cols=203 Identities=23% Similarity=0.327 Sum_probs=155.7
Q ss_pred HHHHHhhhhcCCCccccChHHHHHHHHcCCC--chHHHHHHHHhccchhhh--------hcChhHHHHHHHHHHhhCC--
Q psy17322 206 KQWELHFNRYKRGVSMYRTAEMTNLILRGVP--DAKRREIWLTCSGALNEM--------LRDPDLYAAMRRRVQNERP-- 273 (414)
Q Consensus 206 ~~W~~~~~~~~~~~~~~~~~klk~li~~GIP--~~lR~~vW~~llg~~~~~--------~~~~~~Y~~l~~~l~~~~~-- 273 (414)
+..++.+...... ...+++++++..|+| .++|+.+|++++|+.... ...+..|......+-...+
T Consensus 10 ~~~edvl~~~~~~---id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~ 86 (370)
T KOG4567|consen 10 KSIEDVLNPADDT---IDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKK 86 (370)
T ss_pred hhHHHhhccccch---hhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCcccc
Confidence 3555555544332 357899999999999 699999999999987422 3345667766433211000
Q ss_pred -----C-------CCc---------------chhhHHHHhhhhhcCCCCCCccchh------------------------
Q psy17322 274 -----N-------SNL---------------SLSCDEIERDLHRSLPEHPAFQCEI------------------------ 302 (414)
Q Consensus 274 -----~-------~~~---------------~~~~~qIekDv~RT~p~~~~F~~~~------------------------ 302 (414)
. ..+ -+...||++||.||.|+..+|+...
T Consensus 87 ~~~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~ 166 (370)
T KOG4567|consen 87 DNSKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNR 166 (370)
T ss_pred ccccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcc
Confidence 0 000 1166899999999999999987421
Q ss_pred -h--HHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcC-----------CHHHHHHHHHHHHHhhccccc----CCChh
Q psy17322 303 -G--INALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYT-----------SEQEAFWLLVCLCESLLPDYY----NTKVV 364 (414)
Q Consensus 303 -g--~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-----------~Ee~aFw~l~~L~~~~lp~~f----~~~~~ 364 (414)
| .....|||..||..||.|||+||||.|+|++++++ .|+|||+||.+||... +++| +.+.-
T Consensus 167 ~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMsei-rDnf~k~LDdS~~ 245 (370)
T KOG4567|consen 167 LGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEI-RDNFIKTLDDSVG 245 (370)
T ss_pred cchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHH-HHHHHHhcccccc
Confidence 1 13457999999999999999999999999999876 3899999999999863 3333 34567
Q ss_pred hhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCC
Q psy17322 365 GALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVK 412 (414)
Q Consensus 365 gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~ 412 (414)
|++..+..+.++++++|-+||.||++.++ +..|+++|+..|++..||.
T Consensus 246 GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~l 294 (370)
T KOG4567|consen 246 GIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPL 294 (370)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCc
Confidence 88888999999999999999999999999 6667899999999999985
No 10
>KOG1092|consensus
Probab=99.91 E-value=3.8e-25 Score=216.65 Aligned_cols=191 Identities=24% Similarity=0.366 Sum_probs=161.8
Q ss_pred cChHHHHHHHHcCCCchHHHHHHHHhccchhhh--------hcChhHHHHHHHHHHhhCCC-CCcchhhHHHHhhhhhcC
Q psy17322 222 YRTAEMTNLILRGVPDAKRREIWLTCSGALNEM--------LRDPDLYAAMRRRVQNERPN-SNLSLSCDEIERDLHRSL 292 (414)
Q Consensus 222 ~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~--------~~~~~~Y~~l~~~l~~~~~~-~~~~~~~~qIekDv~RT~ 292 (414)
...++|+++++.|||..+|+.+|+.++|+.... +.....|..++.+....... ...-...+||..|+.|+.
T Consensus 176 id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~d~~rQI~id~prm~ 255 (484)
T KOG1092|consen 176 IDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQDTWRQIPIDIPRMN 255 (484)
T ss_pred ccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCccccCccccccccCCCCCC
Confidence 367899999999999999999999999987422 23345677774443332222 111226789999999999
Q ss_pred CCCCCccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcC--------------------------CHHHHHHH
Q psy17322 293 PEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYT--------------------------SEQEAFWL 346 (414)
Q Consensus 293 p~~~~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~--------------------------~Ee~aFw~ 346 (414)
|..++|+....++.+.|||..++.++|..||+||.|+++.+++.+. -|++||||
T Consensus 256 p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWC 335 (484)
T KOG1092|consen 256 PHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWC 335 (484)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHH
Confidence 9999999999999999999999999999999999999999988542 27899999
Q ss_pred HHHHHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCCC
Q psy17322 347 LVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVKS 413 (414)
Q Consensus 347 l~~L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~d 413 (414)
+..|++.+ .+.|....+|++...+.++.|++..|+.||+||+++|+ .-+|+|+|+.+||.+.||..
T Consensus 336 lskLLD~I-QDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~ 402 (484)
T KOG1092|consen 336 LSKLLDGI-QDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLR 402 (484)
T ss_pred HHHHHHHh-hhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccch
Confidence 99999984 56667889999999999999999999999999999999 88999999999999999963
No 11
>KOG4436|consensus
Probab=99.91 E-value=6.4e-24 Score=220.71 Aligned_cols=199 Identities=27% Similarity=0.473 Sum_probs=167.5
Q ss_pred hHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchh------hhhcChh-HHHHHHHHHHhhCCCCC
Q psy17322 204 KNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALN------EMLRDPD-LYAAMRRRVQNERPNSN 276 (414)
Q Consensus 204 ~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~------~~~~~~~-~Y~~l~~~l~~~~~~~~ 276 (414)
-...|++++.. ++.-.....+.+...++.|+|..-|+++|.++.-... .....++ -|.++.+++..
T Consensus 548 ~~~~wek~~e~-~~~~~k~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqLte------ 620 (948)
T KOG4436|consen 548 VIETWEKILER-TRIKIKKDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQLTE------ 620 (948)
T ss_pred HHHHHHHHHHH-hhhcccccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHHHH------
Confidence 45579999887 3322123568889999999999999999998854332 1122222 37777554432
Q ss_pred cchhhHHHHhhhhhcCCCCCCccch--hhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHHHHHHHhh
Q psy17322 277 LSLSCDEIERDLHRSLPEHPAFQCE--IGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESL 354 (414)
Q Consensus 277 ~~~~~~qIekDv~RT~p~~~~F~~~--~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l~~L~~~~ 354 (414)
..+.|..|+.||||+|++|... .|+..|.|+|.||+..+|++|||||..+|||+||+.|+|++||-++..||-..
T Consensus 621 ---~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~~afellk~LM~~r 697 (948)
T KOG4436|consen 621 ---QQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEENAFELLKFLMFDR 697 (948)
T ss_pred ---HHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchhhHHHHHHHHHHHH
Confidence 5677999999999999999865 57899999999999999999999999999999999999999999999999764
Q ss_pred -cccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCC
Q psy17322 355 -LPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVK 412 (414)
Q Consensus 355 -lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~ 412 (414)
++.-|.++|..++..+..+..+++.+.|+||+|++++.+ ++.|+.+||+|+|+.=||.
T Consensus 698 ~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~l 757 (948)
T KOG4436|consen 698 GMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPL 757 (948)
T ss_pred hhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcc
Confidence 666788999999999999999999999999999999999 8889999999999998885
No 12
>KOG2224|consensus
Probab=99.86 E-value=3.3e-22 Score=195.87 Aligned_cols=212 Identities=17% Similarity=0.306 Sum_probs=155.8
Q ss_pred cchhhchHHHHHH-hhhhcCCCccccChHHHHHHHH-cCCCchHHHHHHHHhccchh----------hhhcChhHHHHHH
Q psy17322 198 RSKEEVKNKQWEL-HFNRYKRGVSMYRTAEMTNLIL-RGVPDAKRREIWLTCSGALN----------EMLRDPDLYAAMR 265 (414)
Q Consensus 198 ~~~e~~~~~~W~~-~~~~~~~~~~~~~~~klk~li~-~GIP~~lR~~vW~~llg~~~----------~~~~~~~~Y~~l~ 265 (414)
..-.+.....|.. ++++.|. +. ..-+|++.+. .||..++|++||.+++..+. .+.+.+.+|+++.
T Consensus 400 ~~~kki~~n~~~~t~lne~gq-ie--dd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiq 476 (781)
T KOG2224|consen 400 GDVKKIGTNAFLGTHLNEKGQ-IE--DDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQ 476 (781)
T ss_pred chhhhhhHHHHHHhhhhhccc-ch--hHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Confidence 4456677778887 7777665 32 4567888776 88999999999999987763 3455677898884
Q ss_pred HHHHhhCCCCCc----chhhHHHHhhhhhcCCCCCCccch--hhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHh-cC
Q psy17322 266 RRVQNERPNSNL----SLSCDEIERDLHRSLPEHPAFQCE--IGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLI-YT 338 (414)
Q Consensus 266 ~~l~~~~~~~~~----~~~~~qIekDv~RT~p~~~~F~~~--~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl-~~ 338 (414)
++--.++..... +...-.++|||.||.+++++|..+ .+.++++|||..||.|||.+||.|||+++.|+.|+ +.
T Consensus 477 qkrlysmspeeh~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevq 556 (781)
T KOG2224|consen 477 QKRLYSMSPEEHIAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQ 556 (781)
T ss_pred HHHhhcCCHHHHHHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhc
Confidence 432222221110 001123689999999999999865 45789999999999999999999888888888774 55
Q ss_pred CHHHHHHHHHHHHHhh------------------------cc-ccc--CCChhhhHHHHHHHHHHHHHHCHHHHHHHHHc
Q psy17322 339 SEQEAFWLLVCLCESL------------------------LP-DYY--NTKVVGALVDQGVMNDLIEEYLPNLHEKLQNM 391 (414)
Q Consensus 339 ~Ee~aFw~l~~L~~~~------------------------lp-~~f--~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~ 391 (414)
+|.++||||+.+|+.| ++ .+| ++....+...+..+++|++...|..|+||+++
T Consensus 557 nesetfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~ 636 (781)
T KOG2224|consen 557 NESETFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQH 636 (781)
T ss_pred cccchhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHh
Confidence 6777777777776531 11 222 23344566677789999999999999999999
Q ss_pred CC---chHhhHHHHHHhcCCCCCC
Q psy17322 392 GM---IRMISLSWFLTIFLSLDVK 412 (414)
Q Consensus 392 ~i---~~~~~~~WfltLF~~~lP~ 412 (414)
|- .-+|+-+|++.+|-+.||.
T Consensus 637 ~ed~lellfchrwlllcfkref~e 660 (781)
T KOG2224|consen 637 GEDGLELLFCHRWLLLCFKREFPE 660 (781)
T ss_pred CcchhhHHHHHHHHHHHhhhcccH
Confidence 85 3457889999999999986
No 13
>KOG1093|consensus
Probab=99.86 E-value=1.7e-21 Score=196.95 Aligned_cols=178 Identities=20% Similarity=0.289 Sum_probs=152.6
Q ss_pred hHHHHHHHHcCCCchHHHHHHHHhccchhhhhcChhHHHHHHHHHHhhCCCCCcchhhHHHHhhhhhcCCCCCCccchhh
Q psy17322 224 TAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIG 303 (414)
Q Consensus 224 ~~klk~li~~GIP~~lR~~vW~~llg~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~~~~~qIekDv~RT~p~~~~F~~~~g 303 (414)
...+-+..+.|+|+-+|+.+|..|++... .....|..+ ++ +.+.. .+.|||.|++|+......-.++.|
T Consensus 345 ~~qI~r~a~vdvpp~~R~~iW~aLL~l~e---~~~a~y~~I----Dk--~Ts~~--tdrqievdiprchQyd~~lsSp~~ 413 (725)
T KOG1093|consen 345 RLQILREAYVDVPPLYRGFIWAALLQLEE---NHTAFYTLI----DK--GTSHS--TDRQIEVDIPRCHQYDELLSSPKG 413 (725)
T ss_pred HHHHHHHhccCCChhHhHHHHHHHhcCcc---ccchhhhhh----hc--CCCCc--chhhhhcccchhhhcccccCCHHH
Confidence 44555666789999999999999998653 223445555 32 33333 789999999999999988899999
Q ss_pred HHHHHhHhhhhhccCCCCCcccchhHHHHHHHh-cC-CHHHHHHHHHHHHHhhcccccCC-ChhhhHHHHHHHHHHHHHH
Q psy17322 304 INALRRVLTAYAAKNPQIGYCQAMNIVTSVFLI-YT-SEQEAFWLLVCLCESLLPDYYNT-KVVGALVDQGVMNDLIEEY 380 (414)
Q Consensus 304 ~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl-~~-~Ee~aFw~l~~L~~~~lp~~f~~-~~~gl~~~~~~~~~LL~~~ 380 (414)
..+|+|+|.|++..+|...|.||+..+|++||. ++ +|+-||-|+..++-+++..||-. +..-++..+.+|.+++..+
T Consensus 414 ~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdns~vikeyLs~f~~l~Afh 493 (725)
T KOG1093|consen 414 HRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLKDNSNVIKEYLSMFSQLLAFH 493 (725)
T ss_pred HHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999984 44 68889999999999999988876 5556778899999999999
Q ss_pred CHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCC
Q psy17322 381 LPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVK 412 (414)
Q Consensus 381 ~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~ 412 (414)
+|+|++||.+.|+ +..|+.+||+|+|+.+||-
T Consensus 494 DpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl 526 (725)
T KOG1093|consen 494 DPELLQHLIDIGFIPELYAIPWFLTMFSHVLPL 526 (725)
T ss_pred CHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccH
Confidence 9999999999999 7788999999999999995
No 14
>KOG1102|consensus
Probab=99.86 E-value=4.7e-22 Score=201.73 Aligned_cols=202 Identities=28% Similarity=0.477 Sum_probs=160.4
Q ss_pred hchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhhhcC-h-hHHHHHHHHHHhhCCCCCcch
Q psy17322 202 EVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRD-P-DLYAAMRRRVQNERPNSNLSL 279 (414)
Q Consensus 202 ~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~~~~-~-~~Y~~l~~~l~~~~~~~~~~~ 279 (414)
....+.|..+...+-..+ ..+..++...+..|||.++|+.+|..+++........ . ..|... . ..... .
T Consensus 114 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~~---~----~~~~~-~ 184 (397)
T KOG1102|consen 114 LEGEQELTALSSSWLKVI-LRRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRLQ---L----DEPEP-H 184 (397)
T ss_pred hhhHHHHHHHHHHhhhhc-cccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHHh---h----ccCCC-c
Confidence 345555665555544432 2367788889999999999999999999863211111 1 112111 1 11111 1
Q ss_pred hhHHHHhhhhhcCCCCCCccch--hhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHHHHHHHhhccc
Q psy17322 280 SCDEIERDLHRSLPEHPAFQCE--IGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPD 357 (414)
Q Consensus 280 ~~~qIekDv~RT~p~~~~F~~~--~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l~~L~~~~lp~ 357 (414)
..++| +|+.||+|.|..|... .|+++|.+|+.||+.++|++||||||..++++++++++||+|||+++.+|...-.+
T Consensus 185 ~~~~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~ee~af~~lv~l~~~~~~~ 263 (397)
T KOG1102|consen 185 ESEII-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLPEEEAFPLLVKLMKNYGLD 263 (397)
T ss_pred hhHHH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCchhhhhhhhhhhhhccchh
Confidence 34556 9999999999999864 56789999999999999999999999999999999999999999999999976455
Q ss_pred ccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCCC
Q psy17322 358 YYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVKS 413 (414)
Q Consensus 358 ~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~d 413 (414)
.|..++.++......++.+++...|.++.|+...++ ..+++..||+|+|+..+|..
T Consensus 264 ~~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~ 320 (397)
T KOG1102|consen 264 LLSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLE 320 (397)
T ss_pred cccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHH
Confidence 558899999999999999999999999999999999 77889999999999998853
No 15
>KOG2197|consensus
Probab=99.75 E-value=7.4e-19 Score=181.92 Aligned_cols=206 Identities=21% Similarity=0.271 Sum_probs=157.8
Q ss_pred chHHHHHHhhhhcCCCccccChHHHHHHH-HcCCCchHHHHHHHHhccchhhhhcCh---------hHHHHHHHHHHhhC
Q psy17322 203 VKNKQWELHFNRYKRGVSMYRTAEMTNLI-LRGVPDAKRREIWLTCSGALNEMLRDP---------DLYAAMRRRVQNER 272 (414)
Q Consensus 203 ~~~~~W~~~~~~~~~~~~~~~~~klk~li-~~GIP~~lR~~vW~~llg~~~~~~~~~---------~~Y~~l~~~l~~~~ 272 (414)
...+.|.......++... ....+..+ ..|+-+.+|+++|+.+.++........ ..|...+.++....
T Consensus 148 ~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~ 224 (488)
T KOG2197|consen 148 LTLEEYNSNAMREGRLDE---SVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTS 224 (488)
T ss_pred chhhhhhhhhhhcccccc---chhhhheecccccccchhhhhhhhhhcccCcccccccccccccccccHhhhhhhheecc
Confidence 667788888766665332 22223333 466766999999999988764322221 14666644443222
Q ss_pred CCCCc-----chhhHHHHhhhhhcCCCCCCccchhh--HHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcC-CHHHHH
Q psy17322 273 PNSNL-----SLSCDEIERDLHRSLPEHPAFQCEIG--INALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYT-SEQEAF 344 (414)
Q Consensus 273 ~~~~~-----~~~~~qIekDv~RT~p~~~~F~~~~g--~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-~Ee~aF 344 (414)
..... ......|.+||.||.+.+.+++.... ...|..||.+|+.+++++||||||+++.++++.++ +|.+||
T Consensus 225 ~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aF 304 (488)
T KOG2197|consen 225 PEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAF 304 (488)
T ss_pred ccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHH
Confidence 21111 01336799999999999999997766 89999999999999999999999999999999766 688899
Q ss_pred HHHHHHHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCC
Q psy17322 345 WLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVK 412 (414)
Q Consensus 345 w~l~~L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~ 412 (414)
|||+++|++..++|. .+..|++.++..+..+++..+|.+|+||+..+. ...++++|++.+|-+.|..
T Consensus 305 wcFv~fm~~~~~nF~-~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ 372 (488)
T KOG2197|consen 305 WCFVGFMDRLRHNFR-IDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEF 372 (488)
T ss_pred HHHHHHHHHHhhcCc-cccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhccccccccc
Confidence 999999999776764 566789999999999999999999999999998 5556899999999888764
No 16
>KOG2595|consensus
Probab=99.71 E-value=1.9e-17 Score=158.96 Aligned_cols=177 Identities=23% Similarity=0.268 Sum_probs=139.6
Q ss_pred hHHHHHHHH--cC-CCchHHHHHHHHhccchhhhhcChhHHHHHHHHHHhhCCCCCcchhhHHHHhhhhhcCCCCC----
Q psy17322 224 TAEMTNLIL--RG-VPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHP---- 296 (414)
Q Consensus 224 ~~klk~li~--~G-IP~~lR~~vW~~llg~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~~~~~qIekDv~RT~p~~~---- 296 (414)
-+.|+.+.. .| +.+++|+.||..|+|..-. ...+..+... ++. .. ..+|+..|++|++...+
T Consensus 48 v~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n-~~~~~~~~~~---~q~-----hk--d~nQV~LDv~RSl~rfppg~p 116 (395)
T KOG2595|consen 48 VDALRYIGLSPGGLVNDSLRKDVWPELLALNIN-HLDATSTLTP---VQK-----HK--DYNQVILDVERSLGRFPPGIP 116 (395)
T ss_pred HHHHHHhccCCCccccHHHHHHHHHHHhccccC-CCcccccCCh---hhh-----Cc--ccceEEEehhhhhccCCCCCC
Confidence 456666654 33 6789999999999986421 1112222222 221 11 56889999999985443
Q ss_pred CccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHH
Q psy17322 297 AFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDL 376 (414)
Q Consensus 297 ~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l~~L~~~~lp~~f~~~~~gl~~~~~~~~~L 376 (414)
.-+...-++.|..++..-...||+..|.||.++||..+|+++.|.+|+-++..|...++++|..+++.+....+..+..+
T Consensus 117 ~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~gE~~Al~l~E~L~~~~lrdfM~~Tld~t~~qL~~i~~i 196 (395)
T KOG2595|consen 117 KELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVGELEALSLMEELSTLHLRDFMLPTLDFTVRQLRLISPI 196 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345556666655667889999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHCHHHHHHHHHcCCchHhhHHHHHHhcCCCCC
Q psy17322 377 IEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDV 411 (414)
Q Consensus 377 L~~~~P~L~~hL~~~~i~~~~~~~WfltLF~~~lP 411 (414)
++..+|+||+.|++..+.++|+++|.+|+|++.+-
T Consensus 197 Ik~~nP~Ly~~l~~aevgtlFaLsWllTWFaH~L~ 231 (395)
T KOG2595|consen 197 IKEVNPELYQFLQSAEVGTLFALSWLLTWFAHNLK 231 (395)
T ss_pred HhhcChHHHHHHHhhcccceehhhHHHHHHhhcch
Confidence 99999999999999999999999999999998763
No 17
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.66 E-value=4.3e-17 Score=125.37 Aligned_cols=66 Identities=36% Similarity=0.721 Sum_probs=44.4
Q ss_pred HHHHhhcCCCCCCccceeEEEEEEccccccccceeEeeccceeEeeecCC-Cee-EEEEecccccccceeecc
Q psy17322 54 EACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIE-NLV-SVVIPLRDVQTIYQVDKD 124 (414)
Q Consensus 54 ~~f~~~F~lP~~E~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~-~~~-~~~ipl~~I~~~~~vek~ 124 (414)
|+||+.|+||.+|.|+++|.|+++++ +.+.+|+||||+|||||.|... ..+ +++|||.||. +|||.
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~--~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~---~i~k~ 68 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKS--KIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIK---SIEKE 68 (69)
T ss_dssp ----------TT--EEEEEEETTTEE-----EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEE---EEEEE
T ss_pred CcccccccCCCCCeEEEEEEEEEECC--ccceeeEEEECCCEEEEEECCCCCceEEEEEEhHhee---EEEEe
Confidence 58999999999999999999999884 7899999999999999988544 444 7999999999 88875
No 18
>KOG4436|consensus
Probab=99.62 E-value=1.9e-15 Score=158.13 Aligned_cols=187 Identities=21% Similarity=0.244 Sum_probs=157.5
Q ss_pred ChHHHHHHHHcCCCchHHHHHHHHhccchhhhh-cChhHHHHHHHHHHhhCCCCCcchhhHHHHhhhhhcCCCCCCccch
Q psy17322 223 RTAEMTNLILRGVPDAKRREIWLTCSGALNEML-RDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCE 301 (414)
Q Consensus 223 ~~~klk~li~~GIP~~lR~~vW~~llg~~~~~~-~~~~~Y~~l~~~l~~~~~~~~~~~~~~qIekDv~RT~p~~~~F~~~ 301 (414)
+..+++.+|.+|+|...|..+|..++......+ .--+.|+++ ...+..... .....-|.+|+.||.|.|.+|...
T Consensus 173 s~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~I~e~~sdl---~~~s~~~Ek-~~~~~~Irrdi~~~~~eh~~fke~ 248 (948)
T KOG4436|consen 173 SLHKLKELVEGGIPMHFRLIRWQLLSSATDREQALIFEDYSDL---APCSSQQEK-ELHIGIIRRDIERTYPEHYFFKEQ 248 (948)
T ss_pred chhhhHHHHhcCCchHHHHHHHHHhcccccchhhHHHHHHHHH---hhhcchhhh-hHHHHHHHHHhhccCcceeeeccC
Confidence 456889999999999999999999987644321 112456666 332222211 114457999999999999999853
Q ss_pred --h-------hHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHHHHHHHhh-cccccCCChhhhHHHHH
Q psy17322 302 --I-------GINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESL-LPDYYNTKVVGALVDQG 371 (414)
Q Consensus 302 --~-------g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l~~L~~~~-lp~~f~~~~~gl~~~~~ 371 (414)
. +++.|+|+..+|+...-++|||||-+.+++.+++.+++|.+|..++.+|..+ ++..+.+.+..+...+.
T Consensus 249 ~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~ 328 (948)
T KOG4436|consen 249 SSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVEEASSVKVQLMILYRLRELSKPEMEPLGLCMF 328 (948)
T ss_pred ccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHHHHHHHHHHHHHhhcccccCCcccchhHHHHH
Confidence 2 4799999999999999999999999999999999999999999999999976 88899999988888888
Q ss_pred HHHHHHHHHCH-HHHHHHHHcCC-chHhhHHHHHHhcCCCCCCC
Q psy17322 372 VMNDLIEEYLP-NLHEKLQNMGM-IRMISLSWFLTIFLSLDVKS 413 (414)
Q Consensus 372 ~~~~LL~~~~P-~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~d 413 (414)
.++...+...| +++.|+.+.+. .++++-.||++.|++.||..
T Consensus 329 q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~ 372 (948)
T KOG4436|consen 329 QLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIF 372 (948)
T ss_pred hhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchh
Confidence 99999999999 99999999999 89999999999999999974
No 19
>KOG1091|consensus
Probab=99.53 E-value=9.3e-15 Score=148.43 Aligned_cols=133 Identities=26% Similarity=0.347 Sum_probs=103.3
Q ss_pred hhHHHHhhhhhcCCCC-CCccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcC--------------------
Q psy17322 280 SCDEIERDLHRSLPEH-PAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYT-------------------- 338 (414)
Q Consensus 280 ~~~qIekDv~RT~p~~-~~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-------------------- 338 (414)
..+.|+.||.||||++ .+|+.+..+..|++||..||..||.+||-|||+.+.|+++++.
T Consensus 104 L~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~f 183 (625)
T KOG1091|consen 104 LEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLGF 183 (625)
T ss_pred HHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcCc
Confidence 5577999999999999 8899998899999999999999999999999999999998652
Q ss_pred CHHH-----------HH--HHHHHHHHh----------------hcc-c------ccCCChhhhHHHHHHHHHHHHHHCH
Q psy17322 339 SEQE-----------AF--WLLVCLCES----------------LLP-D------YYNTKVVGALVDQGVMNDLIEEYLP 382 (414)
Q Consensus 339 ~Ee~-----------aF--w~l~~L~~~----------------~lp-~------~f~~~~~gl~~~~~~~~~LL~~~~P 382 (414)
.|.+ ++ -+++.+|.. ++. + -+..+.+.+......+..++.+.++
T Consensus 184 ~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D~ 263 (625)
T KOG1091|consen 184 EERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVDK 263 (625)
T ss_pred chhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhccH
Confidence 2222 22 244555521 000 0 0112233455555678999999999
Q ss_pred HHHHHHHHcCC-chHhhHHHHHHhcCCCCCC
Q psy17322 383 NLHEKLQNMGM-IRMISLSWFLTIFLSLDVK 412 (414)
Q Consensus 383 ~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~ 412 (414)
.||.||.+.|+ +..|.++|.-.||.+.||-
T Consensus 264 ~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL 294 (625)
T KOG1091|consen 264 SLHSHLVELGIEPQIFGIRWLRLLFGREFPL 294 (625)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHcchhHH
Confidence 99999999999 5556899999999999984
No 20
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.50 E-value=3.7e-14 Score=106.29 Aligned_cols=58 Identities=38% Similarity=0.700 Sum_probs=51.9
Q ss_pred CCCCCCccceeEEEEEEccccccccceeEeeccceeEeeecCC-Cee-EEEEecccccccceeecc
Q psy17322 61 RLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIE-NLV-SVVIPLRDVQTIYQVDKD 124 (414)
Q Consensus 61 ~lP~~E~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~-~~~-~~~ipl~~I~~~~~vek~ 124 (414)
+||++|+|+++|.|+|++ ..+++|+||||++||||.|... ..+ +++||+.+|. +|||.
T Consensus 1 ~l~~~E~l~~~~~C~l~~---~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~---~i~k~ 60 (61)
T smart00568 1 KLPEEEKLIADYSCYLSR---DGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADIT---RIEKS 60 (61)
T ss_pred CcCCCcEEEEEEEeEECC---CccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHee---EEEEC
Confidence 489999999999999996 8899999999999999988544 455 6999999999 99986
No 21
>KOG1032|consensus
Probab=99.39 E-value=1.7e-13 Score=144.73 Aligned_cols=99 Identities=26% Similarity=0.378 Sum_probs=87.6
Q ss_pred cccHHHHhhcC--CCCCCccceeEEEEEEccccccccceeEeeccceeEeeecCCC-eeEEEEecccccccceeeccCC-
Q psy17322 51 AESEACRILFR--LPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIEN-LVSVVIPLRDVQTIYQVDKDME- 126 (414)
Q Consensus 51 ~~~~~f~~~F~--lP~~E~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~-~~~~~ipl~~I~~~~~vek~~~- 126 (414)
..+-.|...+. +|+.|.|+.+++|+++| .+++|||||+|++||||+|.+.+ .++++||+.+|+ .+||+++
T Consensus 104 ~~~~~~a~~~~n~~~~~~~l~~~~~cal~r---eillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~---~ikk~~ta 177 (590)
T KOG1032|consen 104 LAGVNLASEFLNGVPDPEILLTDYSCALQR---EILLQGRMYISEEHICFNSNIFGWETKVVIPFDEIT---LIKKTKTA 177 (590)
T ss_pred hcchhhhhhhhhcCCCcceeeeecchhhcc---ccccccccccccceeeecccccCccceeEEeeeeee---eeehhhhc
Confidence 34446776666 99999999999999999 99999999999999999888776 666999999999 9999998
Q ss_pred ---CCcEEEEEccCcccccCcceEEEecccchHHHHHHHHh
Q psy17322 127 ---SKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKKL 164 (414)
Q Consensus 127 ---~~~i~i~t~~~~~~~~~~~~~~~f~~~~~rd~~~~~l~ 164 (414)
||+|.|+|. ..+|.|+++.+||..+++++
T Consensus 178 g~fpn~i~i~t~---------~~ky~f~s~~Srda~~~~~~ 209 (590)
T KOG1032|consen 178 GIFPNAIEITTG---------TTKYIFVSLLSRDATYKLIK 209 (590)
T ss_pred cCCCcceEEecC---------CCcceeeecccCccHHHHHH
Confidence 999999965 89999999999998887544
No 22
>KOG3636|consensus
Probab=98.69 E-value=5.2e-08 Score=97.30 Aligned_cols=158 Identities=15% Similarity=0.223 Sum_probs=111.3
Q ss_pred CCCchHHHHHHHHhccchhhhhcChhHHHHHHHHHHhhCCCCCcchhhHHHHhhhhhcCCCCCCccc--hhhHHHHHhHh
Q psy17322 234 GVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQC--EIGINALRRVL 311 (414)
Q Consensus 234 GIP~~lR~~vW~~llg~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~~~~~qIekDv~RT~p~~~~F~~--~~g~~~L~rIL 311 (414)
|=|..+ |+.++|+...-... ..+.++ +. - + ...+|.+|..|-......-.. -.....|..++
T Consensus 36 G~~~~~----W~~~L~V~~K~d~l-~~wd~i---yd----L--p--~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~i 99 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMKPNPL-DDWDQI---YD----L--P--NQCALRNDCRKLADGLKNKEEDKVPVVSDLESFI 99 (669)
T ss_pred CCCHHH----HHHHhcccCCCCch-hhHHHH---hC----C--c--hhhHHHHHHHHHHhhcCCchhhccchhHhhhhHh
Confidence 667666 99999986432221 345555 32 1 1 345688888776433322111 12345789999
Q ss_pred hhhhccCCCCCcccchhH---HHHHHHhcCCHHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHH
Q psy17322 312 TAYAAKNPQIGYCQAMNI---VTSVFLIYTSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKL 388 (414)
Q Consensus 312 ~aya~~np~iGY~QGMn~---Iaa~LLl~~~Ee~aFw~l~~L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL 388 (414)
+.|+.. .++.|...... +--++++.++-.+.|-||.+++++|+|.-..+.-.- +..|+-||+.|+|+|..||
T Consensus 100 TfYCK~-Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~----Fh~FRLLlqYHdPelc~~L 174 (669)
T KOG3636|consen 100 TFYCKK-RNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQI----FHLFRLLLQYHDPELCNHL 174 (669)
T ss_pred hhhhhc-cCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCcc----chHHHHHHHhcCHHHhhhh
Confidence 988753 34556554443 344456788999999999999999998655544332 3579999999999999999
Q ss_pred HHcCC-chHhhHHHHHHhcCCCCCC
Q psy17322 389 QNMGM-IRMISLSWFLTIFLSLDVK 412 (414)
Q Consensus 389 ~~~~i-~~~~~~~WfltLF~~~lP~ 412 (414)
....+ +.+|+..||-+||+.++..
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~St 199 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMST 199 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhH
Confidence 99999 9999999999999988764
No 23
>KOG2801|consensus
Probab=97.98 E-value=3.7e-05 Score=73.58 Aligned_cols=178 Identities=18% Similarity=0.282 Sum_probs=120.2
Q ss_pred ChHHHHHHHHcCC---CchHHHHHHHHhccchhhhhcC--hhHHHHHHHHHHhhCCCCCcchhhHHHHhhhhhc-CCCCC
Q psy17322 223 RTAEMTNLILRGV---PDAKRREIWLTCSGALNEMLRD--PDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRS-LPEHP 296 (414)
Q Consensus 223 ~~~klk~li~~GI---P~~lR~~vW~~llg~~~~~~~~--~~~Y~~l~~~l~~~~~~~~~~~~~~qIekDv~RT-~p~~~ 296 (414)
...+++++.+.|- ...+|+.|+..++.....+... ...|.++ +.+..+..+. .--....=|..| .|..
T Consensus 31 elqelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdi---vgkivgkhss--sclplpefvdntqvpsy- 104 (559)
T KOG2801|consen 31 ELQELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDI---VGKIVGKHSS--SCLPLPEFVDNTQVPSY- 104 (559)
T ss_pred hHHHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHH---HHHHhccCCc--ccccchhhcccCcCchh-
Confidence 4568899999884 6789999999987655443333 3578888 5443333221 000000001111 1111
Q ss_pred CccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcC-CHHHHHHHHHHHHHhhcc--cccCCChhhhHHHHHHH
Q psy17322 297 AFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYT-SEQEAFWLLVCLCESLLP--DYYNTKVVGALVDQGVM 373 (414)
Q Consensus 297 ~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-~Ee~aFw~l~~L~~~~lp--~~f~~~~~gl~~~~~~~ 373 (414)
.-+..|....+.||.+.++..|+|++|.++..+++++|.|. +|.++|---+.++...-| ...+++...+...+..|
T Consensus 105 -clnargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtf 183 (559)
T KOG2801|consen 105 -CLNARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTF 183 (559)
T ss_pred -hhcCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhH
Confidence 11345667899999999999999999999999999999765 899999888877754444 34556667788888999
Q ss_pred HHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcC
Q psy17322 374 NDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFL 407 (414)
Q Consensus 374 ~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~ 407 (414)
.+|+.++....++.+....- .-..+..|--.||.
T Consensus 184 gdlvnkycqaahklmvavsedvlqvyadwqrwlfg 218 (559)
T KOG2801|consen 184 GDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFG 218 (559)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 99999999988888765544 33345566555553
No 24
>KOG1648|consensus
Probab=97.23 E-value=3.6e-05 Score=78.15 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=119.1
Q ss_pred ccchhhchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchh------hhhcC----hhHHHHHHH
Q psy17322 197 TRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALN------EMLRD----PDLYAAMRR 266 (414)
Q Consensus 197 ~~~~e~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~------~~~~~----~~~Y~~l~~ 266 (414)
.+...-...+.|+++..+.. +. ...-+...+++|+....|+.+|....+-.. .++.+ ...|+..
T Consensus 525 cda~~glt~~~W~qy~~d~t--~~--e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~-- 598 (813)
T KOG1648|consen 525 CDASAGLTEKFWKQYRADPT--IE--EWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRN-- 598 (813)
T ss_pred CCccccccHHHHHHHhcCCc--hH--HHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHH--
Confidence 34556678889999977642 21 234456667799999999999998866432 11111 1235544
Q ss_pred HHHhhCCCCCcchhhHHHHhhhhhcCCCCCCccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcC-CHHHHHH
Q psy17322 267 RVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYT-SEQEAFW 345 (414)
Q Consensus 267 ~l~~~~~~~~~~~~~~qIekDv~RT~p~~~~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-~Ee~aFw 345 (414)
+...... ....|++|+.|...+.-+|.+..++++ +++...|...|-+-||.|||.++.++++... +|.-+--
T Consensus 599 -l~~~~~~-----~~~~~~kd~e~~~~~~~~fs~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e 671 (813)
T KOG1648|consen 599 -LITLFRA-----NLHRIDKDVERCDRNLMFFSNKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLE 671 (813)
T ss_pred -HHHHHhh-----heeeecchhhhCcchheeecCCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccC
Confidence 2211111 345699999999999999999999988 9999999999999999999999999998654 3333333
Q ss_pred HHHHHH--Hh-hcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCCchHhhHHHHHHhcCCCCC
Q psy17322 346 LLVCLC--ES-LLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDV 411 (414)
Q Consensus 346 ~l~~L~--~~-~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i~~~~~~~WfltLF~~~lP 411 (414)
|+.-+| ++ ..+.+ +|+...+-.++ +++-.+|-.. +++-.....|.||+.-|-..+.
T Consensus 672 ~~s~~~~~q~~~~~q~-----~~~~~~l~~~r-~~~v~~~l~s----~id~~qa~~f~~~~~~~~~~~s 730 (813)
T KOG1648|consen 672 CFSLLMLRQRGKFPQR-----PGMSKCLLNLR-LIQVVDPLIS----DIDYAQALSFRWFLLDFKRELS 730 (813)
T ss_pred CCcHHHHHhcccCCCC-----CCccccccccc-chhhhcchhc----chhhhhhcceeeeccCcccccC
Confidence 444343 22 22222 22222221222 4555555111 1111233458899887765544
No 25
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=96.43 E-value=0.006 Score=50.53 Aligned_cols=86 Identities=23% Similarity=0.310 Sum_probs=60.4
Q ss_pred ccceeEEEEEEccccccccceeEeeccceeEeeec---------------CCC-eeEEEEecccccccceeeccCC---C
Q psy17322 67 KLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSK---------------IEN-LVSVVIPLRDVQTIYQVDKDME---S 127 (414)
Q Consensus 67 ~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~---------------~~~-~~~~~ipl~~I~~~~~vek~~~---~ 127 (414)
+++-++.|.+..+ ...+.|.|.|+++++.|... ... .....+|+.+|+ .|-+..= +
T Consensus 1 ~i~~s~~c~~I~~--~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~---~v~~RRyllr~ 75 (106)
T PF14844_consen 1 KILLSVPCELITP--LDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIK---EVHKRRYLLRD 75 (106)
T ss_dssp --SEEEEEEEEET--TEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEE---EEEEEEETTEE
T ss_pred CEEEEEEEEEEEe--eeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhH---HHHHHHhcCcc
Confidence 3567899999885 45578999999999999543 111 223789999999 7776543 8
Q ss_pred CcEEEEEccCcccccCcceEEEecccchHHHHHHHH
Q psy17322 128 KSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKK 163 (414)
Q Consensus 128 ~~i~i~t~~~~~~~~~~~~~~~f~~~~~rd~~~~~l 163 (414)
+||+|-+. .+....+.|.+-.+||++++.|
T Consensus 76 ~AlEiF~~------dg~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 76 TALEIFFS------DGRSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EEEEEEET------TS-EEEEE-SSHHHHHHHHCCS
T ss_pred eEEEEEEc------CCcEEEEEcCCHHHHHHHHHhh
Confidence 99999997 3456667777788899887643
No 26
>PF14470 bPH_3: Bacterial PH domain
Probab=95.33 E-value=0.23 Score=39.77 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=63.9
Q ss_pred CCCCCccceeEEEEEEccccccccceeEeeccceeEeeecC--CCeeEEEEecccccccceeeccCC--CCcEEEEEccC
Q psy17322 62 LPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKI--ENLVSVVIPLRDVQTIYQVDKDME--SKSVEIVLHPK 137 (414)
Q Consensus 62 lP~~E~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~--~~~~~~~ipl~~I~~~~~vek~~~--~~~i~i~t~~~ 137 (414)
|-++|.+.....|.+... .....|-+.+|+.-|=|.+.. ++.....||+.+|. +|+-.+. .+.|.|.+.
T Consensus 1 L~~~E~I~~~~~~~~~~~--~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~---~v~~~~g~~~~~i~i~~~-- 73 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYF--FTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDIT---SVSFKKGILGGKITIETN-- 73 (96)
T ss_pred CcCCCEEEEEEEEEEeec--ccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheE---EEEEEccccccEEEEEEC--
Confidence 457899999999987632 345679999999999995443 34555899999999 5555554 788999997
Q ss_pred cccccCcceEEEecccchHH--HHHHHH
Q psy17322 138 QYFGCDATTTYVFIVEKDAK--RLREKK 163 (414)
Q Consensus 138 ~~~~~~~~~~~~f~~~~~rd--~~~~~l 163 (414)
...+.|.++...+ .+++.+
T Consensus 74 -------~~~~~i~~i~k~~~~~~~~~i 94 (96)
T PF14470_consen 74 -------GEKIKIDNIQKGDVKEFYEYI 94 (96)
T ss_pred -------CEEEEEEEcCHHHHHHHHHHH
Confidence 7777777774332 444444
No 27
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=90.04 E-value=0.94 Score=36.46 Aligned_cols=62 Identities=18% Similarity=0.345 Sum_probs=39.2
Q ss_pred CCCCCccc-eeEEEEEEcccccc--ccceeEeeccceeEe-eecCCCeeEEEEecccccccceeeccCC
Q psy17322 62 LPATEKLD-GSIAAQLYTPYNRS--QVNGRMFISQNYICF-DSKIENLVSVVIPLRDVQTIYQVDKDME 126 (414)
Q Consensus 62 lP~~E~L~-~~~~c~l~~~~~~~--~~~G~lyls~~~lCF-~s~~~~~~~~~ipl~~I~~~~~vek~~~ 126 (414)
|-++|.++ ..-.+.|..--.+. .-.|++|||.|=||+ .+.......+.|||++|. .+|-.++
T Consensus 10 L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~---~~e~~~g 75 (89)
T PF11605_consen 10 LEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLIS---HIEYSAG 75 (89)
T ss_dssp --TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEE---EEEEE-S
T ss_pred cCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeE---EEEEEcc
Confidence 33455555 44455554422233 358999999999999 666665556999999999 8877665
No 28
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=86.89 E-value=1.8 Score=36.08 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=56.2
Q ss_pred CccceeEEEEEEccccccccceeEeeccceeEeeecC--C--C---ee--------EEEEecccccccceeeccCC---C
Q psy17322 66 EKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKI--E--N---LV--------SVVIPLRDVQTIYQVDKDME---S 127 (414)
Q Consensus 66 E~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~--~--~---~~--------~~~ipl~~I~~~~~vek~~~---~ 127 (414)
|+++-+..|.+..|- ..+.|++-||+++|.|.-.. . . .. ....|+++|. .|-+..= .
T Consensus 1 ~~ivls~~~~mVtPl--~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir---~v~~RRylLr~ 75 (108)
T cd01201 1 GPVLLSTPASLIAPG--VVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIR---AIFSRRYLLQN 75 (108)
T ss_pred CCeEEEeeeeEEEEE--EEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHH---HHHHHhhhccc
Confidence 567778899998874 34569999999999995321 0 0 00 1278999999 7666654 7
Q ss_pred CcEEEEEccCcccccCcceEEEecccchHHHHHHHH
Q psy17322 128 KSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKK 163 (414)
Q Consensus 128 ~~i~i~t~~~~~~~~~~~~~~~f~~~~~rd~~~~~l 163 (414)
.||+|-.. .. .-.|..|.+++...+.+
T Consensus 76 ~alEiF~~--------d~-~~~f~~F~~~~~~k~vv 102 (108)
T cd01201 76 TALELFLA--------SR-TSIFFAFPDQNAVKKVV 102 (108)
T ss_pred ceEEEEEe--------CC-ceEEEEeCcHHHHHHHH
Confidence 99999987 22 23334555666555544
No 29
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=80.61 E-value=3.5 Score=44.45 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=59.9
Q ss_pred eEEEEEEccccccccceeEeec----cceeEeeec-------------CCCeeEEEEecccccccceeeccCC-------
Q psy17322 71 SIAAQLYTPYNRSQVNGRMFIS----QNYICFDSK-------------IENLVSVVIPLRDVQTIYQVDKDME------- 126 (414)
Q Consensus 71 ~~~c~l~~~~~~~~~~G~lyls----~~~lCF~s~-------------~~~~~~~~ipl~~I~~~~~vek~~~------- 126 (414)
.|.|-+.. --|.+||+ .-.|+|.+. ......+.||+.||+ .++|...
T Consensus 520 ~F~AR~~G------kkG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~---elkKvgGlGWK~KL 590 (642)
T PF11696_consen 520 EFPARYKG------KKGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIA---ELKKVGGLGWKGKL 590 (642)
T ss_pred eeeeecCC------ccceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhh---hhhhcccccceeeE
Confidence 46666443 35889999 668999654 112444899999999 9999866
Q ss_pred -----------CCcEEEE-EccCcccccCcceEEEecccchHHHHHHHHhh
Q psy17322 127 -----------SKSVEIV-LHPKQYFGCDATTTYVFIVEKDAKRLREKKLS 165 (414)
Q Consensus 127 -----------~~~i~i~-t~~~~~~~~~~~~~~~f~~~~~rd~~~~~l~~ 165 (414)
-.|+.|. +. ....|.+.....||+|...|-.
T Consensus 591 vVGWa~g~kEv~DGL~I~g~~--------~g~~y~lTA~~~RDeLFNRLiA 633 (642)
T PF11696_consen 591 VVGWALGEKEVVDGLVIVGDE--------PGQEYHLTAMPRRDELFNRLIA 633 (642)
T ss_pred EEeeecCCcccccceEEeccC--------CCCEEEEEecchHHHHHHHHHh
Confidence 3788888 77 6888999999999999988754
No 30
>KOG2224|consensus
Probab=79.31 E-value=0.69 Score=47.07 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=30.8
Q ss_pred CCcccchhHHHHHHH-hcCCHHHHHHHHHHHHHh
Q psy17322 321 IGYCQAMNIVTSVFL-IYTSEQEAFWLLVCLCES 353 (414)
Q Consensus 321 iGY~QGMn~Iaa~LL-l~~~Ee~aFw~l~~L~~~ 353 (414)
||..|||++++|++| -+++|.++||||+.+|.+
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 788899999999999 589999999999999986
No 31
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=77.68 E-value=9.1 Score=29.45 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=42.4
Q ss_pred ccceeEeeecCCCeeEEEEecccccccceeeccCC--------CCcEEEEEccCcccccCcceEEEecccchHHHHHHHH
Q psy17322 92 SQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDME--------SKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKK 163 (414)
Q Consensus 92 s~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek~~~--------~~~i~i~t~~~~~~~~~~~~~~~f~~~~~rd~~~~~l 163 (414)
.+++|.-.+...+. .||+.+|+ +|+++++ ...|.|... .......+-.+++.+.+.|
T Consensus 6 ~~~~L~I~~G~~~~---~I~i~~I~---~I~~~~~~~~~~a~S~~rl~I~y~---------~~~~i~IsP~~~~~FI~~L 70 (74)
T PF06713_consen 6 EDDYLIIKCGFFKK---KIPIEDIR---SIRPTKNPLSSPALSLDRLEIYYG---------KYKSILISPKDKEEFIAEL 70 (74)
T ss_pred eCCEEEEEECCccc---EEEhHHcc---EEEecCCccccccccccEEEEEEC---------CCCEEEEECCCHHHHHHHH
Confidence 55666665553332 39999999 9999975 367788876 3333778888999998887
Q ss_pred hh
Q psy17322 164 LS 165 (414)
Q Consensus 164 ~~ 165 (414)
.+
T Consensus 71 ~k 72 (74)
T PF06713_consen 71 QK 72 (74)
T ss_pred Hh
Confidence 64
No 32
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=76.32 E-value=8.3 Score=30.23 Aligned_cols=62 Identities=21% Similarity=0.416 Sum_probs=37.6
Q ss_pred cceeEeeccce--eEeee--cCCCeeEEEEecccccccceeeccCCC-CcEEEEEccCcccccCcceEEEec
Q psy17322 85 VNGRMFISQNY--ICFDS--KIENLVSVVIPLRDVQTIYQVDKDMES-KSVEIVLHPKQYFGCDATTTYVFI 151 (414)
Q Consensus 85 ~~G~lyls~~~--lCF~s--~~~~~~~~~ipl~~I~~~~~vek~~~~-~~i~i~t~~~~~~~~~~~~~~~f~ 151 (414)
..|.|||++.. +-..- .+... ++.||+.+|++. ++-+..++ =-|.|..+... +++...|.|.
T Consensus 12 ~~G~L~l~~d~~~~~W~~~~~~~~~-~v~i~~~~I~~l-q~Sp~~s~Kv~Lki~~~~~~---~~~~~~f~F~ 78 (79)
T PF08567_consen 12 KDGTLTLTEDRKPLEWTPKASDGPS-TVSIPLNDIKNL-QQSPEGSPKVMLKIVLKDDS---SEESKTFVFT 78 (79)
T ss_dssp EEEEEEEETTCSSEEEEECCSSSSS-EEEEETTTEEEE-EE--TTSSTEEEEEEETTSC------CCCEEE-
T ss_pred CCcEEEEecCCceEEEeecCCCCCc-eEEEEHHHhhhh-ccCCCCCcceEEEEEEecCC---cccceEEEEe
Confidence 34999999999 88833 33333 699999999944 33333333 33677776322 2356777774
No 33
>KOG1032|consensus
Probab=75.60 E-value=1.3 Score=47.71 Aligned_cols=106 Identities=19% Similarity=0.108 Sum_probs=75.4
Q ss_pred cchhcccHHHHhhcCCCCCCccceeEEEEEEccccccccceeEeeccceeEeeecCCCee-EEEEecccccccceeeccC
Q psy17322 47 LNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLV-SVVIPLRDVQTIYQVDKDM 125 (414)
Q Consensus 47 l~~~~~~~~f~~~F~lP~~E~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~~~-~~~ipl~~I~~~~~vek~~ 125 (414)
.+....+..++..|.+|.+|.+..+++|.+.+ ..+++|+++++-.-.||.+.+++.. .+.-.+.++..+ +|-...
T Consensus 244 ~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~---~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~-~vs~~~ 319 (590)
T KOG1032|consen 244 VDNSQSPSALQNSFDSPKEEELEHDFSCSLSR---LFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEI-QVSPIP 319 (590)
T ss_pred cccCCCccccccccCCCccccccccccccccc---cccccccccccccccccceeeccCcceeeecccccccc-cccccc
Confidence 55668888999999999999999999999988 7789999999999999977777644 488888888844 443333
Q ss_pred C---CCcEEEEEc--c--------CcccccCcceEEEecccchH
Q psy17322 126 E---SKSVEIVLH--P--------KQYFGCDATTTYVFIVEKDA 156 (414)
Q Consensus 126 ~---~~~i~i~t~--~--------~~~~~~~~~~~~~f~~~~~r 156 (414)
. .+++...+- + ....-|.+...+.|..+...
T Consensus 320 ~~~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~ 363 (590)
T KOG1032|consen 320 WKGPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY 363 (590)
T ss_pred ccCCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhh
Confidence 2 222333221 1 12223456666777666654
No 34
>KOG2197|consensus
Probab=71.65 E-value=1.6 Score=46.16 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=37.7
Q ss_pred chHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchh
Q psy17322 203 VKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALN 252 (414)
Q Consensus 203 ~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~ 252 (414)
...++|...|...|+... ....++.....||++.+|+++|..|+|.+.
T Consensus 48 l~~~~~~~~f~~~~~~~~--~~~~l~~i~~~gi~psir~evw~fll~~y~ 95 (488)
T KOG2197|consen 48 LKPEKWQANFDPDGRLSG--FVKLLKLIILGGIDPSIRGEVWEFLLGCYD 95 (488)
T ss_pred cchhhhhhccCCCccccc--hhhhheeeecCCCCCcccchhHHHHhcccC
Confidence 347899999999888553 234445555699999999999999999875
No 35
>PF14961 BROMI: Broad-minded protein
Probab=69.07 E-value=14 Score=42.59 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=68.6
Q ss_pred HHHHhHhhhhhccCCCCCcccchhHHHHHHHhcC--CHHHHHHHHHHHHHhh------cccc----cCCC---hhhh---
Q psy17322 305 NALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYT--SEQEAFWLLVCLCESL------LPDY----YNTK---VVGA--- 366 (414)
Q Consensus 305 ~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~--~Ee~aFw~l~~L~~~~------lp~~----f~~~---~~gl--- 366 (414)
++..+++.-|..+++.=+| .|....|+.+.+.+ +-+.+.-++.++..-+ +|.. +.+. ..|+
T Consensus 1084 ~s~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~ 1162 (1296)
T PF14961_consen 1084 KSSLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPV 1162 (1296)
T ss_pred cchhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCch
Confidence 3444555556556666556 47776666654433 4555665555554332 1211 0111 0121
Q ss_pred -HHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCC
Q psy17322 367 -LVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDV 411 (414)
Q Consensus 367 -~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP 411 (414)
......++.+++...|.++.-|.--|. +.+++.+|+--+|=+.|+
T Consensus 1163 ~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyld 1209 (1296)
T PF14961_consen 1163 YFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLD 1209 (1296)
T ss_pred hhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCC
Confidence 223478999999999999999999999 889999999999998876
No 36
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=68.17 E-value=20 Score=28.99 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=44.9
Q ss_pred cceeEeeccceeEeeecCCCeeEEEEecccccccceeecc-CC---CCcEEEEEccCcccccCcceEEEecccchH--HH
Q psy17322 85 VNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKD-ME---SKSVEIVLHPKQYFGCDATTTYVFIVEKDA--KR 158 (414)
Q Consensus 85 ~~G~lyls~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek~-~~---~~~i~i~t~~~~~~~~~~~~~~~f~~~~~r--d~ 158 (414)
.+|-||..++.|-|-. ..- -++||+.||..+ ..||. .. ...+.|+++ ..+...+.|.++... +.
T Consensus 11 ~~g~L~pl~~~l~f~~--~kP-~~~i~~~dI~~v-~feRv~~~~~ktFDl~v~~k------~~~~~~~~fs~I~~~e~~~ 80 (95)
T PF08512_consen 11 NEGFLYPLEKCLLFGL--EKP-PFVIPLDDIESV-EFERVSSFSSKTFDLVVILK------DYEGPPHEFSSIDREEYDN 80 (95)
T ss_dssp EEEEEEEESSEEEEEC--SSS--EEEEGGGEEEE-EEE--ESSSSSEEEEEEEET------T-TS-EEEEEEEEGGGHHH
T ss_pred cCEEEEEccceEEEec--CCC-eEEEEhhHeeEE-EEEecccCcceEEEEEEEEe------cCCCCcEEEeeECHHHHHH
Confidence 6799999999555522 222 279999999977 77775 33 577888887 234788888887643 34
Q ss_pred HHHHHh
Q psy17322 159 LREKKL 164 (414)
Q Consensus 159 ~~~~l~ 164 (414)
+.+-+.
T Consensus 81 l~~~l~ 86 (95)
T PF08512_consen 81 LKDFLK 86 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 37
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=66.05 E-value=5.5 Score=28.69 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=34.0
Q ss_pred HHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCC
Q psy17322 372 VMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLD 410 (414)
Q Consensus 372 ~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~l 410 (414)
.|.++--+++|+.-+.|++.|| .++-.++=|++||++++
T Consensus 5 ~FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM 44 (56)
T PF10815_consen 5 EFMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVM 44 (56)
T ss_pred HHHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHH
Confidence 3677888999999999999999 88888999999998765
No 38
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=56.54 E-value=66 Score=26.20 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=40.4
Q ss_pred EeeccceeEeeecCCCeeEEEEecccccccceeeccCC-----CCcEEEEEccCcccccCcceEEEec-ccchHHHHHHH
Q psy17322 89 MFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDME-----SKSVEIVLHPKQYFGCDATTTYVFI-VEKDAKRLREK 162 (414)
Q Consensus 89 lyls~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek~~~-----~~~i~i~t~~~~~~~~~~~~~~~f~-~~~~rd~~~~~ 162 (414)
.-|+.+-|++.......-+=+|||.+|. .||.... ++.+.|.|. ....|+++ +-.+|++=++.
T Consensus 26 F~Lt~~~L~Y~k~~~~~~~g~I~L~~i~---~ve~v~~~~~~~~~~fqivt~--------~r~~yi~a~s~~E~~~Wi~a 94 (98)
T cd01244 26 FQLTTTHLSWAKDVQCKKSALIKLAAIK---GTEPLSDKSFVNVDIITIVCE--------DDTMQLQFEAPVEATDWLNA 94 (98)
T ss_pred EEECCCEEEEECCCCCceeeeEEccceE---EEEEcCCcccCCCceEEEEeC--------CCeEEEECCCHHHHHHHHHH
Confidence 4566666766333334445799999999 7776554 578999887 34555554 34445554444
Q ss_pred Hh
Q psy17322 163 KL 164 (414)
Q Consensus 163 l~ 164 (414)
|+
T Consensus 95 l~ 96 (98)
T cd01244 95 LE 96 (98)
T ss_pred Hh
Confidence 43
No 39
>KOG4471|consensus
Probab=54.12 E-value=19 Score=38.58 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=56.7
Q ss_pred cHHHHhhcC-CCCCCccceeEEEEEEccccccccceeEeeccceeEeeecCCCee-EEEEecccccccceeeccCC----
Q psy17322 53 SEACRILFR-LPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLV-SVVIPLRDVQTIYQVDKDME---- 126 (414)
Q Consensus 53 ~~~f~~~F~-lP~~E~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~~~-~~~ipl~~I~~~~~vek~~~---- 126 (414)
++.+...|. ||.+..+...|.|-+.. ...|.|+||+==|=|.|...+.. -+-+||.-|. +|||...
T Consensus 27 ~~~~~~~~~~L~GE~i~~~~y~c~f~G-----~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie---~vek~~~~~~g 98 (717)
T KOG4471|consen 27 DENLQVPFPLLPGESIIDEKYICPFLG-----AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIE---RVEKRGGATSG 98 (717)
T ss_pred cccccCcccccCCcccccceecccccc-----cccceEEeeeeEEEEEeccCCCceeEeechhhhh---hhhhcCccccC
Confidence 334677888 67666666778886533 78899999998888888877632 2679999999 9999975
Q ss_pred --CCcEEEEEc
Q psy17322 127 --SKSVEIVLH 135 (414)
Q Consensus 127 --~~~i~i~t~ 135 (414)
..+|.|+-+
T Consensus 99 ~ns~~L~i~CK 109 (717)
T KOG4471|consen 99 ENSFGLEITCK 109 (717)
T ss_pred CcceeEEEEec
Confidence 466777765
No 40
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=47.78 E-value=71 Score=23.89 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=44.7
Q ss_pred EeeccceeEeeecCCCeeEEEEecccccccceeeccCC-------CCcEEEEEccCcccccCcceEEEecccchHHHHHH
Q psy17322 89 MFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDME-------SKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLRE 161 (414)
Q Consensus 89 lyls~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek~~~-------~~~i~i~t~~~~~~~~~~~~~~~f~~~~~rd~~~~ 161 (414)
..++++.+...+...+.....||+..|+ .++=..+ -..|.|.+.. +..+.....+.+..+.+++.+
T Consensus 6 y~i~~~~l~i~~G~~~~~~~~i~~~~Iq---~v~~~q~~~~r~~g~~~i~i~~~~----~~~~~~~i~~~~~~~a~~i~~ 78 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFSKRTTIIPLDRIQ---SVSIKQNPLQRLFGLGTIKIDTAG----GSGEKIEIPFLSIEDAEEIYD 78 (80)
T ss_pred EEEECCEEEEEECeEEEEEEEEEhhHeE---EEEEEcCHHHHhCccEEEEEEECC----CCCceeEEecCCHHHHHHHHh
Confidence 6778888888887777777999999999 4444433 4667777762 111124566666666666655
Q ss_pred H
Q psy17322 162 K 162 (414)
Q Consensus 162 ~ 162 (414)
.
T Consensus 79 ~ 79 (80)
T PF03703_consen 79 W 79 (80)
T ss_pred h
Confidence 4
No 41
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=45.40 E-value=11 Score=21.88 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=9.6
Q ss_pred hcccHHHHhhc
Q psy17322 50 RAESEACRILF 60 (414)
Q Consensus 50 ~~~~~~f~~~F 60 (414)
++.|++||++|
T Consensus 9 p~SNddFrkmf 19 (21)
T PF05391_consen 9 PKSNDDFRKMF 19 (21)
T ss_pred ccchHHHHHHH
Confidence 47899999988
No 42
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=41.33 E-value=1e+02 Score=29.07 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=27.6
Q ss_pred ccccceeEeeccceeEeeecCCCeeEEEEeccccccc
Q psy17322 82 RSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTI 118 (414)
Q Consensus 82 ~~~~~G~lyls~~~lCF~s~~~~~~~~~ipl~~I~~~ 118 (414)
.-...||+.||+.-|.|.+.+.. ..||+++|..|
T Consensus 23 ~~W~~~rIiLs~~rlvl~~~~~k---~~Ipls~I~Di 56 (221)
T PF04283_consen 23 GKWVKGRIILSNDRLVLAFNDGK---ITIPLSSIEDI 56 (221)
T ss_pred CCcEEEEEEEecCEEEEEcCCCe---EEEecceeEec
Confidence 34578999999999999884433 69999999944
No 43
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=39.24 E-value=89 Score=22.81 Aligned_cols=37 Identities=8% Similarity=0.224 Sum_probs=30.1
Q ss_pred ccccceeEeeccceeEeeecCCCeeEEEEeccccccc
Q psy17322 82 RSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTI 118 (414)
Q Consensus 82 ~~~~~G~lyls~~~lCF~s~~~~~~~~~ipl~~I~~~ 118 (414)
..---|.+++|.-=+.-+|.......+.||+..|.++
T Consensus 16 n~G~~G~l~VTNlRiiW~s~~~~~~NlSIgy~~i~~i 52 (55)
T smart00683 16 NNGDLGVFFVTNLRLVWHSDTNPRFNISVGYLQITNV 52 (55)
T ss_pred CCCCeeEEEEEeeEEEEEeCCCCceEEEEcceeEEEE
Confidence 3445699999999888888877777799999999943
No 44
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=38.05 E-value=71 Score=27.05 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=45.2
Q ss_pred ccccceeEeeccceeEeeecCCCeeEEEEecccccccceeeccCC-----CCcEEEEEccCcccccCcceEEEecccchH
Q psy17322 82 RSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDME-----SKSVEIVLHPKQYFGCDATTTYVFIVEKDA 156 (414)
Q Consensus 82 ~~~~~G~lyls~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek~~~-----~~~i~i~t~~~~~~~~~~~~~~~f~~~~~r 156 (414)
...-+|++.+-+.=+=|...--...=+-|||.+|. .|.-.-. -....|.|. ..-.|.|++-.+.
T Consensus 20 g~~~yGkimiGDkaFEFyn~~n~~dyIQIPW~eI~---~V~a~V~fkgk~I~RF~I~Tk--------~~G~f~Fsskd~k 88 (118)
T PF06115_consen 20 GLGKYGKIMIGDKAFEFYNDRNVEDYIQIPWEEID---YVIASVSFKGKWIPRFAIFTK--------KNGKFTFSSKDSK 88 (118)
T ss_pred cccccCeEEEcccceEeecCCChhhcEEeChhhee---EEEEEEEECCCEEeeEEEEEC--------CCCEEEEEECChH
Confidence 34578999999998888433222222889999999 6654322 233889998 4688999886655
Q ss_pred HH
Q psy17322 157 KR 158 (414)
Q Consensus 157 d~ 158 (414)
.-
T Consensus 89 ~~ 90 (118)
T PF06115_consen 89 KV 90 (118)
T ss_pred HH
Confidence 43
No 45
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=29.20 E-value=1.5e+02 Score=24.28 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=30.1
Q ss_pred EeeccceeEe-eecCC-CeeEEEEecccccccceeeccCC-------CCcEEEEEc
Q psy17322 89 MFISQNYICF-DSKIE-NLVSVVIPLRDVQTIYQVDKDME-------SKSVEIVLH 135 (414)
Q Consensus 89 lyls~~~lCF-~s~~~-~~~~~~ipl~~I~~~~~vek~~~-------~~~i~i~t~ 135 (414)
..|+.|.|.+ ..... ...+-+|+|.++. .|+.... +|+..|.|.
T Consensus 24 F~L~~~~L~y~K~~~~~~~~~g~IdL~~~~---sVk~~~~~~~~~~~~~~Fei~tp 76 (101)
T cd01264 24 FTLSGAQLLFQKGKSKDDPDDCSIDLSKIR---SVKAVAKKRRDRSLPKAFEIFTA 76 (101)
T ss_pred EEEeCCEEEEEeccCccCCCCceEEcccce---EEeeccccccccccCcEEEEEcC
Confidence 6788888866 33322 2223599999999 6654432 699999998
No 46
>PRK11798 ClpXP protease specificity-enhancing factor; Provisional
Probab=26.08 E-value=60 Score=28.31 Aligned_cols=38 Identities=18% Similarity=0.447 Sum_probs=29.8
Q ss_pred cceeEeeccceeEeeecCCC-eeEEEEecccccccceee
Q psy17322 85 VNGRMFISQNYICFDSKIEN-LVSVVIPLRDVQTIYQVD 122 (414)
Q Consensus 85 ~~G~lyls~~~lCF~s~~~~-~~~~~ipl~~I~~~~~ve 122 (414)
..+.|.+.+.++.|.-..++ ...+.||+..|..||.-|
T Consensus 57 Av~~L~i~nd~I~F~ARFgG~~~~i~VP~~AV~aIyArE 95 (138)
T PRK11798 57 AVGNLQLGNDAISFNARFGGVPRQIYVPVAAVLAIYARE 95 (138)
T ss_pred cccCeEEeccEEEEEEEECCEEEEEEEeHHHhhhhhhhc
Confidence 35789999999999666555 455999999999775544
No 47
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=24.49 E-value=19 Score=24.70 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=19.2
Q ss_pred hHHHHHHHH-cCCCchHHHHHHHHh
Q psy17322 224 TAEMTNLIL-RGVPDAKRREIWLTC 247 (414)
Q Consensus 224 ~~klk~li~-~GIP~~lR~~vW~~l 247 (414)
.++|+++.. .+||...|..+|.++
T Consensus 20 ~k~lkk~~~e~kiP~~~R~~~pll~ 44 (47)
T TIGR02433 20 SKKLKKLFIDAKVPPWLRDRIPLLF 44 (47)
T ss_pred CchHHHHHHHcCCCHHHHcCccEEE
Confidence 467888876 899999998876544
No 48
>PF04386 SspB: Stringent starvation protein B; InterPro: IPR007481 Escherichia coli stringent starvation protein B (SspB), is thought to enhance the specificity of degradation of tmRNA-tagged proteins by the ClpXP protease. The tmRNA tag, also known as ssrA, is an 11-aa peptide added to the C terminus of proteins stalled during translation, targets proteins for degradation by ClpXP and ClpAP. SspB is a cytoplasmic protein that specifically binds to residues 1-4 and 7 of the tag. Binding of SspB enhances degradation of tagged proteins by ClpX, and masks sequence elements important for ClpA interactions, inhibiting degradation by ClpA []. However, more recent work has cast doubt on the importance of SspB in wild-type cells []. SspB is encoded in an operon whose synthesis is stimulated by carbon, amino acid, and phosphate starvation. SspB may play a special role during nutrient stress, for example by ensuring rapid degradation of the products of stalled translation, without causing a global increase in degradation of all ClpXP substrates [].; PDB: 2NYS_A 2QAZ_D 2QAS_A 1OX9_A 1OX8_A 1YFN_C 1TWB_B 1OU9_C 1OU8_B 1ZSZ_B ....
Probab=24.18 E-value=1.2e+02 Score=26.93 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=26.0
Q ss_pred ceeEeeccceeEe-eecCCCeeEEEEeccccccc
Q psy17322 86 NGRMFISQNYICF-DSKIENLVSVVIPLRDVQTI 118 (414)
Q Consensus 86 ~G~lyls~~~lCF-~s~~~~~~~~~ipl~~I~~~ 118 (414)
...|.+.+.++.| .+..+....++||+..|..|
T Consensus 66 ~~~L~v~~d~i~f~arF~G~~~~i~VP~~AV~ai 99 (155)
T PF04386_consen 66 VRDLSVDNDAISFTARFGGVPESIYVPFSAVLAI 99 (155)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEEEEEGGGEEEE
T ss_pred cCCcEEECCEEEEEEEECCEEEEEEEhHHhhhee
Confidence 4579999999999 55555566799999999944
No 49
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=23.44 E-value=94 Score=26.76 Aligned_cols=30 Identities=13% Similarity=0.386 Sum_probs=20.5
Q ss_pred eeEeeccceeEeeecCCCeeEEEEeccccc
Q psy17322 87 GRMFISQNYICFDSKIENLVSVVIPLRDVQ 116 (414)
Q Consensus 87 G~lyls~~~lCF~s~~~~~~~~~ipl~~I~ 116 (414)
|.|||++..|-+-+.......+.||+..|.
T Consensus 1 g~L~Vt~~~l~w~~~~~~~~G~~ipY~sI~ 30 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDSSKGFSIPYPSIS 30 (135)
T ss_dssp EEEEEETTEEEEEET--TTEEEEESS---S
T ss_pred CEEEEecCEEEEECCCcCCcceeecCCeEE
Confidence 789999999998663224446999999887
No 50
>PHA02150 hypothetical protein
Probab=21.36 E-value=63 Score=24.34 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=34.8
Q ss_pred HHHHhhcCCCCCCccceeEEEEEEccccccccceeEeeccceeEeeecCCCee
Q psy17322 54 EACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLV 106 (414)
Q Consensus 54 ~~f~~~F~lP~~E~L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~~~ 106 (414)
++|...|+-=++=--.+|.+|.... .-+...|.+|+|..|--|.+.+.++.
T Consensus 21 ~efa~~f~~wd~if~~ed~~~~~~s--d~~ei~g~~~mssqwypf~~~dlg~r 71 (77)
T PHA02150 21 KEFAKHFKKWDDVFATEDLSCEGMT--DWAEINGQYIMSSQWYPFVSDDLGSR 71 (77)
T ss_pred HHHHHHhhhHhHhhhhhhccccccc--ceeEECcEEEEEeceecceecccccc
Confidence 4677777633232333566676655 24567899999999999988887753
No 51
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.77 E-value=4.6e+02 Score=21.18 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=39.6
Q ss_pred eeEeeccceeEeeecCC---C--eeEEEEecccccccceeeccCC-CCcEEEEEccCcccccCcceEEEec--ccchHHH
Q psy17322 87 GRMFISQNYICFDSKIE---N--LVSVVIPLRDVQTIYQVDKDME-SKSVEIVLHPKQYFGCDATTTYVFI--VEKDAKR 158 (414)
Q Consensus 87 G~lyls~~~lCF~s~~~---~--~~~~~ipl~~I~~~~~vek~~~-~~~i~i~t~~~~~~~~~~~~~~~f~--~~~~rd~ 158 (414)
=.+||.++.|...+... . ...=+|||..++ +..++.... +|+..|.+. +..|.+. +-.+|++
T Consensus 19 R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~~~~~~~F~I~~~---------~ks~~l~A~s~~Ek~~ 88 (99)
T cd01220 19 RMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHEWGVPHCFTIFGG---------QCAITVAASTRAEKEK 88 (99)
T ss_pred EEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-EeeccCCcCCceeEEEEcC---------CeEEEEECCCHHHHHH
Confidence 36888888877744322 1 345689998886 213333222 899999987 3334443 4444555
Q ss_pred HHHHHh
Q psy17322 159 LREKKL 164 (414)
Q Consensus 159 ~~~~l~ 164 (414)
=++.+.
T Consensus 89 Wi~~i~ 94 (99)
T cd01220 89 WLADLS 94 (99)
T ss_pred HHHHHH
Confidence 554443
Done!