Query psy17322
Match_columns 414
No_of_seqs 326 out of 1829
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:11:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qye_A TBC1 domain family memb 100.0 2.5E-41 8.5E-46 335.0 18.9 204 201-413 26-240 (331)
2 2qq8_A TBC1 domain family memb 100.0 7.4E-41 2.5E-45 332.2 17.3 210 199-413 15-245 (334)
3 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.1E-40 3.7E-45 327.6 15.3 198 205-413 5-206 (310)
4 2qfz_A TBC1 domain family memb 100.0 5.4E-40 1.8E-44 327.2 16.5 209 198-413 19-261 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 1.7E-38 5.7E-43 322.0 19.2 205 201-413 4-248 (396)
6 4hl4_A TBC1 domain family memb 100.0 8.5E-38 2.9E-42 304.6 10.1 201 195-411 10-217 (292)
7 3qwl_A TBC1 domain family memb 99.9 8.2E-25 2.8E-29 212.6 8.3 182 206-413 27-219 (294)
8 2hth_B Vacuolar protein sortin 94.2 0.7 2.4E-05 39.2 12.1 62 62-126 13-76 (140)
9 1pfj_A TFIIH basal transcripti 91.5 0.62 2.1E-05 37.6 7.4 70 87-165 22-98 (108)
10 2cay_A VPS36 PH domain, vacuol 90.6 0.46 1.6E-05 40.6 6.2 88 62-152 25-118 (145)
11 1zsq_A Myotubularin-related pr 90.2 2.1 7.2E-05 44.1 11.9 93 60-165 7-112 (528)
12 1lw3_A Myotubularin-related pr 88.7 3.1 0.00011 43.9 11.9 94 59-165 78-184 (657)
13 2yf0_A Myotubularin-related pr 76.0 6.8 0.00023 40.1 8.2 71 82-165 22-97 (512)
14 1w7p_D VPS36P, YLR417W; ESCRT- 61.7 1.7 5.7E-05 45.2 0.0 40 84-126 42-82 (566)
15 1t77_A Lipopolysaccharide-resp 58.5 13 0.00045 36.9 5.8 85 68-163 3-105 (414)
16 1zyi_A Methylosome subunit pic 44.7 19 0.00066 31.3 4.0 54 58-116 14-71 (171)
17 1ou8_A Stringent starvation pr 41.7 24 0.00082 28.4 3.8 38 85-122 58-96 (111)
18 1yfn_A Stringent starvation pr 41.4 24 0.00082 28.7 3.8 37 85-121 59-96 (118)
19 1y5o_A TFB1, RNA polymerase II 40.8 1.4E+02 0.0048 24.0 8.4 76 85-164 12-105 (115)
20 1ou9_A Stringent starvation pr 38.2 29 0.00098 28.7 3.8 38 85-122 58-96 (129)
21 3f5r_A FACT complex subunit PO 36.5 1E+02 0.0035 27.2 7.4 74 83-165 34-116 (191)
22 3fss_A Histone chaperone RTT10 34.9 64 0.0022 29.4 5.9 61 84-157 164-226 (237)
23 2dn6_A KIAA0640 protein; PH do 30.8 1.2E+02 0.0041 22.9 6.5 44 89-135 29-77 (115)
24 1fao_A Dual adaptor of phospho 29.7 1.1E+02 0.0038 23.7 6.2 44 89-135 39-86 (126)
25 1eaz_A Tandem PH domain contai 23.4 2.1E+02 0.0071 21.8 6.7 64 89-164 35-107 (125)
26 2cod_A Centaurin-delta 1; ARF 23.1 1.4E+02 0.0048 22.7 5.5 43 89-135 30-73 (115)
27 2gcl_A Hypothetical 63.0 kDa p 22.7 1.4E+02 0.0049 27.5 6.2 67 71-155 166-238 (261)
28 1erd_A Pheromone ER-2; NMR {Eu 22.6 42 0.0014 20.9 1.7 19 317-335 13-31 (40)
29 1wgq_A FYVE, rhogef and PH dom 20.3 2.6E+02 0.0088 20.9 6.5 66 89-165 29-100 (109)
No 1
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=2.5e-41 Score=334.98 Aligned_cols=204 Identities=25% Similarity=0.421 Sum_probs=183.2
Q ss_pred hhchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhh-------hcChhHHHHHHHHHHhhCC
Q psy17322 201 EEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEM-------LRDPDLYAAMRRRVQNERP 273 (414)
Q Consensus 201 e~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~-------~~~~~~Y~~l~~~l~~~~~ 273 (414)
...+.++|.+++.++|+.+...+.+++++++++|||+.+|+.||+.++|+.... ...++.|.++ +...
T Consensus 26 ~~e~~~~W~~~l~~~~~~~~~~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l---~~~~-- 100 (331)
T 3qye_A 26 LKEVTTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKEL---LKQL-- 100 (331)
T ss_dssp CHHHHHHHHHHHTCTTGGGCCCCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHH---TTSC--
T ss_pred cHHHHHHHHHHhccCCCCcccCCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHH---HHhc--
Confidence 344678899999999987766788999999999999999999999999986532 2345789998 5432
Q ss_pred CCCcchhhHHHHhhhhhcCCCCCCccch--hhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHHHHHH
Q psy17322 274 NSNLSLSCDEIERDLHRSLPEHPAFQCE--IGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLC 351 (414)
Q Consensus 274 ~~~~~~~~~qIekDv~RT~p~~~~F~~~--~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l~~L~ 351 (414)
.. ..++|++||+||+|++++|+.+ .+++.|+|||.||+.+||++|||||||+|||+||++++|++|||||+++|
T Consensus 101 --~~--~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~ 176 (331)
T 3qye_A 101 --TS--QQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLM 176 (331)
T ss_dssp --CT--THHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred --CC--chhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22 5789999999999999999976 67899999999999999999999999999999999999999999999999
Q ss_pred Hhh-cccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCCC
Q psy17322 352 ESL-LPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVKS 413 (414)
Q Consensus 352 ~~~-lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~d 413 (414)
+++ ++++|.+++.|+...+.+++.+++.++|+||+||.+.|+ +..|+++||+|||++.+|.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~ 240 (331)
T 3qye_A 177 FDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLG 240 (331)
T ss_dssp TTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHH
T ss_pred HhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHH
Confidence 986 789999999999999999999999999999999999999 67889999999999999954
No 2
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-41 Score=332.18 Aligned_cols=210 Identities=18% Similarity=0.318 Sum_probs=178.3
Q ss_pred chhhchHHHHH-HhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhhhcChhHHHHHHHHHHhhCC----
Q psy17322 199 SKEEVKNKQWE-LHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERP---- 273 (414)
Q Consensus 199 ~~e~~~~~~W~-~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~~~~~~~Y~~l~~~l~~~~~---- 273 (414)
.....+..+|. .++.+|+.. .+.+++++++++|||+++|+.||+.++|+. ...+++.|+.+.++......
T Consensus 15 ~~~~~~~~~W~~~il~~w~~~---~~~~~lr~l~~~GIP~~lR~~vW~~llg~~--~~~~~~~y~~ll~~~~~~~~~~~~ 89 (334)
T 2qq8_A 15 YFQGNAVLTWNNEILPNWETM---WCSRKVRDLWWQGIPPSVRGKVWSLAIGNE--LNITHELFDICLARAKERWRSLST 89 (334)
T ss_dssp CCSSCHHHHHHHTTGGGCC-----CCCHHHHHHHHTCCCHHHHHHHHHHHHCCT--TCCCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhHHhc---cChHHHHHHHHCCCCHHHHHHHHHHHhCCc--cccCHHHHHHHHHHHHHHHHHhcc
Confidence 34567788998 588888763 368999999999999999999999999975 34567888888443221100
Q ss_pred -C------C------CcchhhHHHHhhhhhcCCCCCCccch-hhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCC
Q psy17322 274 -N------S------NLSLSCDEIERDLHRSLPEHPAFQCE-IGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTS 339 (414)
Q Consensus 274 -~------~------~~~~~~~qIekDv~RT~p~~~~F~~~-~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~ 339 (414)
. . ......++|++||+||+|++++|+.+ .+++.|+|||.||+.+||++|||||||+|||+||++++
T Consensus 90 ~~~~~~~~d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~ 169 (334)
T 2qq8_A 90 GGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLD 169 (334)
T ss_dssp -----------------CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSC
T ss_pred ccccCcccccccccccchhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCC
Confidence 0 0 00126789999999999999999975 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc-ccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCCC
Q psy17322 340 EQEAFWLLVCLCESLL-PDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVKS 413 (414)
Q Consensus 340 Ee~aFw~l~~L~~~~l-p~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~d 413 (414)
|++|||||+++|+++. .+||..+..++...+.+++.+++.++|+||+||.+.|+ +.+|+++||+|||++.||.+
T Consensus 170 E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~ 245 (334)
T 2qq8_A 170 TADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLD 245 (334)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHH
T ss_pred HHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHH
Confidence 9999999999999874 47899899999999999999999999999999999999 77889999999999999964
No 3
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=327.63 Aligned_cols=198 Identities=26% Similarity=0.508 Sum_probs=176.2
Q ss_pred HHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhhhhcChhHHHHHHHHHHhhCCCCCcchhhHHH
Q psy17322 205 NKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEI 284 (414)
Q Consensus 205 ~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~~~~~qI 284 (414)
.++|.+++++|++... .+.+++++++++|||+.+|+.||+.++|+.... ...+.|..+ +.+ .+. ..++|
T Consensus 5 ~~~W~~~~~~w~~~~~-~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~-~~~~~Y~~l---~~~----~~~--~~~~I 73 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLG-ARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQ-AMLDRYRIL---ITK----DSA--QESVI 73 (310)
T ss_dssp -CCHHHHHHHHHTSTT-SCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCH-HHHHHHHHH---TTS----CCT--THHHH
T ss_pred HHHHHHHHHHHhhhcc-cCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcch-hHHHHHHHH---Hhc----cCC--cHHHH
Confidence 4679999999977554 477999999999999999999999999986422 234678777 432 223 67999
Q ss_pred HhhhhhcCCCCCCccch--hhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHHHHHHHhh-cccccCC
Q psy17322 285 ERDLHRSLPEHPAFQCE--IGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESL-LPDYYNT 361 (414)
Q Consensus 285 ekDv~RT~p~~~~F~~~--~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l~~L~~~~-lp~~f~~ 361 (414)
++||+||+|++++|+.+ .+++.|+|||.||+.+||++|||||||+|||+||++++|++|||||+++|+++ ++++|.+
T Consensus 74 ~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~~~~~~ 153 (310)
T 3hzj_A 74 TRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRN 153 (310)
T ss_dssp HHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTSCGGGGTHH
T ss_pred HHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhcccccccccc
Confidence 99999999999999976 57899999999999999999999999999999999999999999999999986 7899999
Q ss_pred ChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHHHhcCCCCCCC
Q psy17322 362 KVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLSLDVKS 413 (414)
Q Consensus 362 ~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~WfltLF~~~lP~d 413 (414)
+++|+...+.+++.+++.++|+||+||.+.|+ +.+|+++||+|||++.+|.+
T Consensus 154 ~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~ 206 (310)
T 3hzj_A 154 NFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLC 206 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHH
T ss_pred cHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHH
Confidence 99999999999999999999999999999999 67889999999999999964
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=5.4e-40 Score=327.25 Aligned_cols=209 Identities=18% Similarity=0.327 Sum_probs=174.1
Q ss_pred cchhhchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchh--------hhhcChhHHHHHHHHHH
Q psy17322 198 RSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALN--------EMLRDPDLYAAMRRRVQ 269 (414)
Q Consensus 198 ~~~e~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~--------~~~~~~~~Y~~l~~~l~ 269 (414)
..++..|.++|.++++++.. +.+++++++++|||+.+|+.||+.++|+.. .....++.|..++++..
T Consensus 19 ~~~e~~r~~kw~~~l~~~~~-----d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~ 93 (345)
T 2qfz_A 19 SEREASRLDKFKQLLAGPNT-----DLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYY 93 (345)
T ss_dssp -----CHHHHHHHHHHCSBC-----CHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC-
T ss_pred cchhHHHHHHHHHHHcCCCC-----CHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788899999999997643 568999999999999999999999999853 22345678999944322
Q ss_pred hhCCCCCcchhhHHHHhhhhhcCCCCCCccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcC-----------
Q psy17322 270 NERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYT----------- 338 (414)
Q Consensus 270 ~~~~~~~~~~~~~qIekDv~RT~p~~~~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~----------- 338 (414)
.........+..++|++||.||+|+ ++|+++.+++.|+|||.+|+.+||++|||||||+|||+||+++
T Consensus 94 ~~~~~~~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~ 172 (345)
T 2qfz_A 94 DSRNDEVHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVD 172 (345)
T ss_dssp -------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----
T ss_pred cCCCccchHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhccccccc
Confidence 1111112223779999999999999 9999999999999999999999999999999999999998643
Q ss_pred --------------CHHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHHHHH
Q psy17322 339 --------------SEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFL 403 (414)
Q Consensus 339 --------------~Ee~aFw~l~~L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~Wfl 403 (414)
+|++|||||+++|+++ +++|..+++|+...+.+++.+|+.++|+||+||++.|+ +.+|+++||+
T Consensus 173 ~~~~~~l~~~~~~~~E~daF~~f~~lm~~~-~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~ 251 (345)
T 2qfz_A 173 TVDVSGVPAEVLCNIEADTYWCMSKLLDGI-QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMN 251 (345)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHTS-GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHcc-ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 2899999999999985 78899999999999999999999999999999999999 6678999999
Q ss_pred HhcCCCCCCC
Q psy17322 404 TIFLSLDVKS 413 (414)
Q Consensus 404 tLF~~~lP~d 413 (414)
|||++.||.+
T Consensus 252 ~lF~~~~p~~ 261 (345)
T 2qfz_A 252 NLLMREVPLR 261 (345)
T ss_dssp TTTTTTSCHH
T ss_pred HHHcccCCHH
Confidence 9999999964
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1.7e-38 Score=321.98 Aligned_cols=205 Identities=20% Similarity=0.347 Sum_probs=177.4
Q ss_pred hhchHHHHHHhhhhcCCCccccChHHHHHHHHcCCCchHHHHHHHHhccchhh--------hhcChhHHHHHHHHHHhhC
Q psy17322 201 EEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNE--------MLRDPDLYAAMRRRVQNER 272 (414)
Q Consensus 201 e~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~GIP~~lR~~vW~~llg~~~~--------~~~~~~~Y~~l~~~l~~~~ 272 (414)
...|.++|.+++++++ ..+.++|++++++|||+.+|+.||+.++|+... ....++.|.++ +++..
T Consensus 4 ~~~R~~kw~~lL~~~~----~~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l---~~~~~ 76 (396)
T 1fkm_A 4 IIQRISKFDNILKDKT----IINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDS---LKHTF 76 (396)
T ss_dssp HHHHHHHHHHHHSSCS----BCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHH---HHHTS
T ss_pred HHHHHHHHHHHHcCCC----CCCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHH---HHHHh
Confidence 3568889999999875 125789999999999999999999999998632 23456789999 44322
Q ss_pred C--CCCcchhhHHHHhhhhhcCCCCCCccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhc-------------
Q psy17322 273 P--NSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIY------------- 337 (414)
Q Consensus 273 ~--~~~~~~~~~qIekDv~RT~p~~~~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~------------- 337 (414)
. .....+..++|++||.||+|++++|+.+.+++.|+|||.+|+.+||++|||||||+|||+||++
T Consensus 77 ~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~ 156 (396)
T 1fkm_A 77 SDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDD 156 (396)
T ss_dssp SSSCSTHHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGG
T ss_pred hccCcccHHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhcccccccc
Confidence 2 1112236789999999999999999999999999999999999999999999999999999864
Q ss_pred ---------CC-------HHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCC-chHhhHH
Q psy17322 338 ---------TS-------EQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLS 400 (414)
Q Consensus 338 ---------~~-------Ee~aFw~l~~L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i-~~~~~~~ 400 (414)
++ |++|||||++||+++ +++|.+++.|+...+.+++.||+.++|+||+||++.|+ +.+|+++
T Consensus 157 ~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~-~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r 235 (396)
T 1fkm_A 157 VEIKDPSTYMVDEQITDLEADTFWCLTKLLEQI-TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR 235 (396)
T ss_dssp TTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGG-GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred ccccchhhccchhhhhhhHHHHHHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 33 999999999999984 78899999999999999999999999999999999999 6788999
Q ss_pred HHHHhcCCCCCCC
Q psy17322 401 WFLTIFLSLDVKS 413 (414)
Q Consensus 401 WfltLF~~~lP~d 413 (414)
||+|||++.||.+
T Consensus 236 W~l~LF~~~~p~~ 248 (396)
T 1fkm_A 236 WMNCLLMREFQMG 248 (396)
T ss_dssp HHHTTTGGGSCHH
T ss_pred HHHHHHHhhCCHH
Confidence 9999999999864
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=8.5e-38 Score=304.61 Aligned_cols=201 Identities=20% Similarity=0.269 Sum_probs=171.3
Q ss_pred ccccchhhchHHHHHHhhhhcCCCccccChHHHHHHHHcC---CCchHHHHHHHHhccchhhhhcChhHHHHHHHHHHhh
Q psy17322 195 IETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRG---VPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNE 271 (414)
Q Consensus 195 ~~~~~~e~~~~~~W~~~~~~~~~~~~~~~~~klk~li~~G---IP~~lR~~vW~~llg~~~~~~~~~~~Y~~l~~~l~~~ 271 (414)
++....+..|.+.++..++....++ ++|+++++.| +|+++|+.||+.++|+..... +..|... ...
T Consensus 10 ~~~~~~~~~k~~~i~~~l~~~~~dl-----~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~--~~~~~~~---~~~- 78 (292)
T 4hl4_A 10 ADFNAKRKKKVAEIHQALNSDPTDV-----AALRRMAISEGGLLTDEIRRKVWPKLLNVNANDP--PPISGKN---LRQ- 78 (292)
T ss_dssp --CHHHHHHHHHHHHHHHTSSSCCH-----HHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSC--CSCCCTT---HHH-
T ss_pred CCccchhHHHHHHHHHHHcCCcccH-----HHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccC--CCchhhh---hcc-
Confidence 3446678889999999998776644 6999999843 899999999999999875322 2233322 111
Q ss_pred CCCCCcchhhHHHHhhhhhcCCCCCCccc----hhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHHhcCCHHHHHHHH
Q psy17322 272 RPNSNLSLSCDEIERDLHRSLPEHPAFQC----EIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLL 347 (414)
Q Consensus 272 ~~~~~~~~~~~qIekDv~RT~p~~~~F~~----~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~Ee~aFw~l 347 (414)
... ..+||++||+||+|+++.|.. ..+++.|+|||.||+.+||++|||||||+|||+||++++|++|||||
T Consensus 79 ---~~~--~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l 153 (292)
T 4hl4_A 79 ---MSK--DYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLV 153 (292)
T ss_dssp ---HCT--THHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHH
T ss_pred ---cch--hHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHH
Confidence 122 789999999999999998864 34578999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCCchHhhHHHHHHhcCCCCC
Q psy17322 348 VCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMISLSWFLTIFLSLDV 411 (414)
Q Consensus 348 ~~L~~~~lp~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i~~~~~~~WfltLF~~~lP 411 (414)
+++|+..+++||.+++.++...+.+++.+++.++|+||+||++.++.++|+++||+|||++++|
T Consensus 154 ~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~~~~~~~W~ltlF~~~l~ 217 (292)
T 4hl4_A 154 EKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLS 217 (292)
T ss_dssp HHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCCSGGGHHHHHTTTTTTSC
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCcchHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999999999999999999888999999999999987
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.91 E-value=8.2e-25 Score=212.65 Aligned_cols=182 Identities=12% Similarity=0.171 Sum_probs=130.9
Q ss_pred HHHHHhhhhcCCCccccChHHHHHHHHcC-CCchHHHHHHHHhccch--------hhhhcChhHHHHHHHHHHhhCCCCC
Q psy17322 206 KQWELHFNRYKRGVSMYRTAEMTNLILRG-VPDAKRREIWLTCSGAL--------NEMLRDPDLYAAMRRRVQNERPNSN 276 (414)
Q Consensus 206 ~~W~~~~~~~~~~~~~~~~~klk~li~~G-IP~~lR~~vW~~llg~~--------~~~~~~~~~Y~~l~~~l~~~~~~~~ 276 (414)
+..+.++++... +.++|++++++| ||+.+|+.||+.++|+. ......++.|.++.++++
T Consensus 27 ~~~~~ll~~~~~-----d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~~------- 94 (294)
T 3qwl_A 27 KSLEILLKDDRL-----DTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHALK------- 94 (294)
T ss_dssp HHHHHHTTSSBC-----CHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhcCCCC-----CHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhhh-------
Confidence 457777776433 568999999999 99999999999999993 344556788999843321
Q ss_pred cchhhHHHHhhhhhcCCCCCCccchhhHHHHHhHhhhhhccCCCCCcccchhHHHHHHH-hcCCHHHHHHHHHHHHHhhc
Q psy17322 277 LSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFL-IYTSEQEAFWLLVCLCESLL 355 (414)
Q Consensus 277 ~~~~~~qIekDv~RT~p~~~~F~~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LL-l~~~Ee~aFw~l~~L~~~~l 355 (414)
..++|.. ..|-+..|-.....+. .....+|.. +++. ++|||..||++++ ++.+|++|||||+++|++ +
T Consensus 95 ---~~r~I~~----~tP~~~vfl~~~~~~~-~~l~~~~~~-~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~-l 163 (294)
T 3qwl_A 95 ---VVRFVSD----ATPQAEVYLRMYQLES-GKLPRSPSF-PLEP-DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ-L 163 (294)
T ss_dssp ---HTTSCCT----TSCHHHHHHHHHHHHH-TCCCSSTTS-CCCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH-H
T ss_pred ---hhhhhhc----cCchHHHHHHHHHccc-ccccccccC-Cccc-chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH-H
Confidence 2233333 2232222222211110 012233322 4443 5599999999988 567899999999999999 5
Q ss_pred ccccCCChhhhHHHHHHHHHHHHHHCHHHHHHHHHcCCchHh-hHHHHHHhcCCCCCCC
Q psy17322 356 PDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMI-SLSWFLTIFLSLDVKS 413 (414)
Q Consensus 356 p~~f~~~~~gl~~~~~~~~~LL~~~~P~L~~hL~~~~i~~~~-~~~WfltLF~~~lP~d 413 (414)
+++|.++++|++. .++.|++.++|+|++||++.|+.+.+ +.+||++||++.+|.+
T Consensus 164 ~~~f~~~~~gl~~---~l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~ 219 (294)
T 3qwl_A 164 NTKYRDSLPQLPK---AFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPES 219 (294)
T ss_dssp HTTTTTTGGGHHH---HHHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHH
T ss_pred HHhhCCChhHHHH---HHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHH
Confidence 6899999999865 45999999999999999999995455 4499999999999964
No 8
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=94.18 E-value=0.7 Score=39.16 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=43.2
Q ss_pred CCCCCccceeE-EEEEEccc-cccccceeEeeccceeEeeecCCCeeEEEEecccccccceeeccCC
Q psy17322 62 LPATEKLDGSI-AAQLYTPY-NRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDME 126 (414)
Q Consensus 62 lP~~E~L~~~~-~c~l~~~~-~~~~~~G~lyls~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek~~~ 126 (414)
|..+|.++... .+.|.-.. ....-.|++|||.+=|||.......+++.|||+.|. .+|....
T Consensus 13 L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~~~~s~~lpl~~v~---~~e~~~~ 76 (140)
T 2hth_B 13 LEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIV---FIEEQAA 76 (140)
T ss_dssp CCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEE---EEEEECC
T ss_pred cCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCCCceEEEEEhHHee---eeeeecc
Confidence 56667766433 34453311 124478999999999999444335567999999999 8888766
No 9
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=91.47 E-value=0.62 Score=37.63 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=51.5
Q ss_pred eeEeeccceeEeeecCCCeeEEEEecccccccceeeccCC---CCcEEEEEccCcccccCcceEEEeccc----chHHHH
Q psy17322 87 GRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDME---SKSVEIVLHPKQYFGCDATTTYVFIVE----KDAKRL 159 (414)
Q Consensus 87 G~lyls~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek~~~---~~~i~i~t~~~~~~~~~~~~~~~f~~~----~~rd~~ 159 (414)
|.|||+..++--.........+++++.+|+ ...-+.. -=-|.|+.+ .++...|.|++- .+||.+
T Consensus 22 GtL~l~~d~i~W~p~~~~~~~vs~~~~~I~---~qq~SP~~k~KVqLqi~l~------~~~~~~F~Ftn~~~a~~erd~V 92 (108)
T 1pfj_A 22 GALYLMAERIAWAPEGKDRFTISHMYADIK---CQKISPEGKAKIQLQLVLH------AGDTTNFHFSNESTAVKERDAV 92 (108)
T ss_dssp CEEEEETTEEEEECSSSSSCSEEEETTTCC---CEEECCSSSSSCEEEEECS------SSCEEEEECCCSSCTTHHHHHH
T ss_pred ceEEEEcceEEEccCCCCCceEEEehhhhh---cceeCCCCCccEEEEEEEe------CCCceEEEEcCcHHHHHHHHHH
Confidence 999999999998655445555889999999 5444433 234777777 468889999974 568888
Q ss_pred HHHHhh
Q psy17322 160 REKKLS 165 (414)
Q Consensus 160 ~~~l~~ 165 (414)
.+.|..
T Consensus 93 Kd~L~~ 98 (108)
T 1pfj_A 93 KDLLQQ 98 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 10
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=90.62 E-value=0.46 Score=40.58 Aligned_cols=88 Identities=20% Similarity=0.195 Sum_probs=52.8
Q ss_pred CCCCCccceeE-EEEEEcccc--ccccceeEeeccceeEe-eecCCCeeEEEEecccccccceeeccCC--CCcEEEEEc
Q psy17322 62 LPATEKLDGSI-AAQLYTPYN--RSQVNGRMFISQNYICF-DSKIENLVSVVIPLRDVQTIYQVDKDME--SKSVEIVLH 135 (414)
Q Consensus 62 lP~~E~L~~~~-~c~l~~~~~--~~~~~G~lyls~~~lCF-~s~~~~~~~~~ipl~~I~~~~~vek~~~--~~~i~i~t~ 135 (414)
|..+|.++-.. ...|.-... ...-.|++|||.+=||| .+......++.|||..|. .+|...+ .....|+..
T Consensus 25 L~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~---~~e~~~~~fg~s~Ki~l~ 101 (145)
T 2cay_A 25 LREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLA---YVNYSSGFLTRSPRLILF 101 (145)
T ss_dssp CCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEE---EEEEECSSSSSSCEEEEE
T ss_pred cCCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHhee---eeeEEcCccccCceEEEE
Confidence 34456665332 334432111 24468999999999999 444433367999999999 8888776 222455543
Q ss_pred cCcccccCcceEEEecc
Q psy17322 136 PKQYFGCDATTTYVFIV 152 (414)
Q Consensus 136 ~~~~~~~~~~~~~~f~~ 152 (414)
.....-+....++.|-+
T Consensus 102 ~~p~~~~~~~~KLsFk~ 118 (145)
T 2cay_A 102 FKDPSSSTEFVQLSFRK 118 (145)
T ss_dssp ESSCSSTTCCEEEEESS
T ss_pred ecCCCCCceEEEEEEcC
Confidence 21112233566676654
No 11
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=90.20 E-value=2.1 Score=44.11 Aligned_cols=93 Identities=18% Similarity=0.254 Sum_probs=58.4
Q ss_pred cC-CCCCCccceeEE-EEEEccccccccceeEeeccceeEeeecCCC-eeEEEEecccccccceeeccCC-------CCc
Q psy17322 60 FR-LPATEKLDGSIA-AQLYTPYNRSQVNGRMFISQNYICFDSKIEN-LVSVVIPLRDVQTIYQVDKDME-------SKS 129 (414)
Q Consensus 60 F~-lP~~E~L~~~~~-c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~-~~~~~ipl~~I~~~~~vek~~~-------~~~ 129 (414)
|. || .|.++.... ..+..++ .-...|.||||+..|.|.+.... ...+-||+..|. +|||..+ +.+
T Consensus 7 ~~lLp-GE~i~~~~~~V~~~~~~-~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~---~vek~~~~s~~~~~~~~ 81 (528)
T 1zsq_A 7 PPLLP-GENIKDMAKDVTYICPF-TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIN---RVEKIGGASSRGENSYG 81 (528)
T ss_dssp CCCCT-TCCEEEEEEEEEEEETT-TEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEE---EEEEECCTTCCSTTCSE
T ss_pred CccCC-CCeEEEecCCEEEeCCC-CCceeEEEEEECCEEEEEccCCCccEEEEeeccceE---EEEEcCCCCcCCCCCce
Confidence 55 55 455553332 2233344 23689999999999999876544 345889999999 8888642 346
Q ss_pred EEEEEccCcccccCcceEEEec--cc-chHHHHHHHHhh
Q psy17322 130 VEIVLHPKQYFGCDATTTYVFI--VE-KDAKRLREKKLS 165 (414)
Q Consensus 130 i~i~t~~~~~~~~~~~~~~~f~--~~-~~rd~~~~~l~~ 165 (414)
|.|..+ .-..+.|. .- .++..+++.|..
T Consensus 82 l~I~CK--------Dfr~~~f~f~~~~~~~~~v~~~L~~ 112 (528)
T 1zsq_A 82 LETVCK--------DIRNLRFAHKPEGRTRRSIFENLMK 112 (528)
T ss_dssp EEEEET--------TTEEEEEECCGGGCCHHHHHHHHHH
T ss_pred EEEEcc--------CCeEEEEEecCchHHHHHHHHHHHH
Confidence 777776 34444443 22 235566666654
No 12
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=88.67 E-value=3.1 Score=43.91 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=58.8
Q ss_pred hcC-CCCCCccceeE-EEEEEccccccccceeEeeccceeEeeecCCC-eeEEEEecccccccceeeccCC-------CC
Q psy17322 59 LFR-LPATEKLDGSI-AAQLYTPYNRSQVNGRMFISQNYICFDSKIEN-LVSVVIPLRDVQTIYQVDKDME-------SK 128 (414)
Q Consensus 59 ~F~-lP~~E~L~~~~-~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~-~~~~~ipl~~I~~~~~vek~~~-------~~ 128 (414)
-|. || .|.++... ...+..++ .-...|.||||...|.|.+.... ...+-||+..|. +|||..+ +.
T Consensus 78 ~~~LLP-GE~v~~~~~~V~~~~p~-~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~---~Iekv~g~s~~g~~~~ 152 (657)
T 1lw3_A 78 EPPLLP-GENIKDMAKDVTYICPF-TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIN---RVEKIGGASSRGENSY 152 (657)
T ss_dssp CCCCCT-TCCEEEEEEEEEEEETT-TEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEE---EEEEECCTTCCSTTCS
T ss_pred CCccCC-CeeEEEEeCCEEEecCC-CCceeEEEEEECCEEEEEecCCCcceEEEecccceE---EEEecCCCcccCCCCc
Confidence 466 55 55555333 23333344 23588999999999999876544 345889999999 8888642 34
Q ss_pred cEEEEEccCcccccCcceEEEec--cc-chHHHHHHHHhh
Q psy17322 129 SVEIVLHPKQYFGCDATTTYVFI--VE-KDAKRLREKKLS 165 (414)
Q Consensus 129 ~i~i~t~~~~~~~~~~~~~~~f~--~~-~~rd~~~~~l~~ 165 (414)
+|.|..+ .-..+.|. .- .++..+++.|..
T Consensus 153 ~l~I~CK--------DfR~~~f~f~~~~~~~~~v~~~L~~ 184 (657)
T 1lw3_A 153 GLETVCK--------DIRNLRFAHKPEGRTRRSIFENLMK 184 (657)
T ss_dssp EEEEEET--------TTEEEEEECCGGGCCHHHHHHHHHH
T ss_pred eEEEEec--------CCcEEEEEeCCccchHHHHHHHHHH
Confidence 5777776 34444443 22 235556666653
No 13
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=75.97 E-value=6.8 Score=40.15 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=46.4
Q ss_pred ccccceeEeeccceeEeeecCCCeeEEEEecccccccceeeccCC-CC--cEEEEEccCcccccCcceE--EEecccchH
Q psy17322 82 RSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDME-SK--SVEIVLHPKQYFGCDATTT--YVFIVEKDA 156 (414)
Q Consensus 82 ~~~~~G~lyls~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek~~~-~~--~i~i~t~~~~~~~~~~~~~--~~f~~~~~r 156 (414)
.....|.||||...|-|.+.... .+.||+.-|. +|||... .. +|.|..+ .-.. |.|.+-.++
T Consensus 22 ~~~~~GtL~lTn~~LiF~~~~~~--e~wi~~~~I~---~VeK~~~~~~~~~l~I~CK--------Dfr~~~f~f~~~~~~ 88 (512)
T 2yf0_A 22 NKSLTGTLYLTATHLLFIDSHQK--ETWILHHHIA---SVEKLALTTSGCPLVIQCK--------NFRTVHFIVPRERDC 88 (512)
T ss_dssp --CCEEEEEECSSEEEEEESSSC--EEEEEGGGEE---EEEECCCBTTBEEEEEEET--------TSCEEEEEESCHHHH
T ss_pred CCceeEEEEEECCEEEEeCCCCC--ceEeccccee---EEEEecCCCCCceEEEEec--------CCcEEEEEeCChHHH
Confidence 45789999999999999874333 3689999999 9999865 33 4555554 4444 444444444
Q ss_pred HHHHHHHhh
Q psy17322 157 KRLREKKLS 165 (414)
Q Consensus 157 d~~~~~l~~ 165 (414)
..+++.|..
T Consensus 89 ~~v~~sL~~ 97 (512)
T 2yf0_A 89 HDIYNSLLQ 97 (512)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455555543
No 14
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=61.74 E-value=1.7 Score=45.19 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=0.0
Q ss_pred ccceeEeeccceeEe-eecCCCeeEEEEecccccccceeeccCC
Q psy17322 84 QVNGRMFISQNYICF-DSKIENLVSVVIPLRDVQTIYQVDKDME 126 (414)
Q Consensus 84 ~~~G~lyls~~~lCF-~s~~~~~~~~~ipl~~I~~~~~vek~~~ 126 (414)
+-.|++|||.|=||+ ........++.|||++|. ++|....
T Consensus 42 ~q~G~~yLTShRiiyvD~~~p~~~s~~l~L~~I~---~~e~~ag 82 (566)
T 1w7p_D 42 RQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLA---YVNYSSG 82 (566)
T ss_dssp --------------------------------------------
T ss_pred ccCceEEEEeeeEEEecCCCCcceEEEEEhHHcc---eeeeeec
Confidence 468999999999999 666667678999999999 8888765
No 15
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=58.51 E-value=13 Score=36.94 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=55.9
Q ss_pred cceeEEEEEEccccccccceeEeeccceeEeeecCCC---------------eeEEEEecccccccceeeccCC---CCc
Q psy17322 68 LDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIEN---------------LVSVVIPLRDVQTIYQVDKDME---SKS 129 (414)
Q Consensus 68 L~~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~---------------~~~~~ipl~~I~~~~~vek~~~---~~~ 129 (414)
++-++.|.+.+| .....|+|.|++..|.|...... .....+++.+|. .|-+..- ++|
T Consensus 3 v~~~~~~~~i~p--~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~---~i~~Rryll~~~a 77 (414)
T 1t77_A 3 VSLSTPAQLVAP--SVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIR---SIFSRRYLLQNTA 77 (414)
T ss_dssp CSEEEEEEEECS--SCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEE---EEEEEEETTEEEE
T ss_pred EEEEEEEEEEee--ecceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcceEecchhee---eeeeeeccCccee
Confidence 456778999987 55677999999999999642110 001368899999 6654433 899
Q ss_pred EEEEEccCcccccCcceEEEecccchHHHHHHHH
Q psy17322 130 VEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKK 163 (414)
Q Consensus 130 i~i~t~~~~~~~~~~~~~~~f~~~~~rd~~~~~l 163 (414)
|+|-+. .+....+.|.+-..++.++..+
T Consensus 78 lEif~~------~g~s~~l~F~~~~~~~~~~~~l 105 (414)
T 1t77_A 78 LEIFMA------NRVAVMFNFPDPATVKKVVNFL 105 (414)
T ss_dssp EEEEET------TSCEEEEECSSHHHHHHHHHHS
T ss_pred EEEEEc------CCcEEEEEcCCHHHHHHHHHhc
Confidence 999998 2233444454444455555554
No 16
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=44.66 E-value=19 Score=31.29 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=31.7
Q ss_pred hhcCCCCC-Cccc---eeEEEEEEccccccccceeEeeccceeEeeecCCCeeEEEEeccccc
Q psy17322 58 ILFRLPAT-EKLD---GSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQ 116 (414)
Q Consensus 58 ~~F~lP~~-E~L~---~~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~~~~~~ipl~~I~ 116 (414)
+-|.-|.+ |.+. .+..+.+.. +..-.|.|||++.-|-+.+. ....+.||+..|.
T Consensus 14 ~~~~~p~~~E~v~~~~~~v~~vl~~---~~~g~GtLyVt~~~l~W~~~--~~~G~sI~YpsIs 71 (171)
T 1zyi_A 14 KSFPPPGSAEGLRQQQPETEAVLNG---KGLGTGTLYIAESRLSWLDG--SGLGFSLEYPTIS 71 (171)
T ss_dssp -------------CBCSSEEEEBTT---BCCCEEEEEEETTEEEEEET--TTEEEEESSCCCS
T ss_pred ccCCCCCCccceEEEcCCEEEEECC---CccCceEEEEEcCEEEEEcC--CCcEEEeecCeEE
Confidence 34454541 4443 345566543 56678999999999988665 4446999999887
No 17
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=41.72 E-value=24 Score=28.38 Aligned_cols=38 Identities=18% Similarity=0.514 Sum_probs=29.9
Q ss_pred cceeEeeccceeEeeecCCC-eeEEEEecccccccceee
Q psy17322 85 VNGRMFISQNYICFDSKIEN-LVSVVIPLRDVQTIYQVD 122 (414)
Q Consensus 85 ~~G~lyls~~~lCF~s~~~~-~~~~~ipl~~I~~~~~ve 122 (414)
..+.|.+.+.++.|+...++ ...+.||+..|..||.-|
T Consensus 58 Av~~L~i~nd~isF~ARFgGv~~~i~VP~~AV~aIyArE 96 (111)
T 1ou8_A 58 ATGNLQLTNDFIQFNARFKGVSRELYIPMGAALAIYARE 96 (111)
T ss_dssp TCEEEEECSSEEEEEEEETTEEEEEEEEGGGEEEEEETT
T ss_pred hhcCeEEeccEEEEEEEECCEeEEEEEehHhheEeeeec
Confidence 46889999999999666666 445999999999665444
No 18
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=41.44 E-value=24 Score=28.70 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=29.7
Q ss_pred cceeEeeccceeEeeecCCC-eeEEEEeccccccccee
Q psy17322 85 VNGRMFISQNYICFDSKIEN-LVSVVIPLRDVQTIYQV 121 (414)
Q Consensus 85 ~~G~lyls~~~lCF~s~~~~-~~~~~ipl~~I~~~~~v 121 (414)
..+.|.+.+.++.|+...++ ...+.||+..|..||.-
T Consensus 59 Av~~L~i~nd~IsF~ARFgGv~~~i~VP~~AV~aIyAr 96 (118)
T 1yfn_A 59 AVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYAR 96 (118)
T ss_dssp GCEEEEECSSEEEEEEEETTEEEEEEEEGGGEEEEEET
T ss_pred hhcCeEEeccEEEEEEEECCEeEEEEEehHhheEeeee
Confidence 46889999999999666665 44599999999977653
No 19
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=40.83 E-value=1.4e+02 Score=24.01 Aligned_cols=76 Identities=9% Similarity=0.133 Sum_probs=50.5
Q ss_pred cceeEeeccc----eeEeeecCCCeeEEEEecccccccceeeccCCCCc---EEEEEcc--------Cc---ccccCcce
Q psy17322 85 VNGRMFISQN----YICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKS---VEIVLHP--------KQ---YFGCDATT 146 (414)
Q Consensus 85 ~~G~lyls~~----~lCF~s~~~~~~~~~ipl~~I~~~~~vek~~~~~~---i~i~t~~--------~~---~~~~~~~~ 146 (414)
..|-|.|++. .|--.+.++. -.+.||+..|. .+.-+..+++ |.|.-.. ++ .-..-+..
T Consensus 12 k~G~lti~eD~~p~~l~W~p~~g~-~~isI~l~~It---~LQqTp~ts~KvmLKI~~k~~~~~~~~~~~~~~~~~~p~~~ 87 (115)
T 1y5o_A 12 VSGIIAINEDVSPAELTWRSTDGD-KVHTVVLSTID---KLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRH 87 (115)
T ss_dssp CEEEEEEECSSSSCEEEEEESSSS-CEEEEESTTCS---EEEECCTTCSSEEEEEEECSCCSSSCCCCSSCCSSCCCEEE
T ss_pred cccEEEEccCCCcceEEEEECCCC-ccEEEEhhhhh---hhhcCCCCCCceEEEEEEeccccccccCCCcCCCCCCcceE
Confidence 5699999999 8888777664 34999999999 8877765222 3443331 00 11112348
Q ss_pred EEEecccchHHHHHHHHh
Q psy17322 147 TYVFIVEKDAKRLREKKL 164 (414)
Q Consensus 147 ~~~f~~~~~rd~~~~~l~ 164 (414)
.|.|.+-.+.|.+.+.|.
T Consensus 88 ~F~FtnR~~~d~IKd~Lq 105 (115)
T 1y5o_A 88 MFSFNNRTVMDNIKMTLQ 105 (115)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHH
Confidence 899999666777777665
No 20
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=38.20 E-value=29 Score=28.65 Aligned_cols=38 Identities=18% Similarity=0.514 Sum_probs=29.8
Q ss_pred cceeEeeccceeEeeecCCC-eeEEEEecccccccceee
Q psy17322 85 VNGRMFISQNYICFDSKIEN-LVSVVIPLRDVQTIYQVD 122 (414)
Q Consensus 85 ~~G~lyls~~~lCF~s~~~~-~~~~~ipl~~I~~~~~ve 122 (414)
..+.|.+.+.++.|+...++ ...+.||+..|..||.-|
T Consensus 58 Av~~L~i~nd~IsF~ARFgGv~~~I~VP~~AV~aIyArE 96 (129)
T 1ou9_A 58 ATGNLQLTNDFIQFNARFKGVSRELYIPMGAALAIYARE 96 (129)
T ss_dssp TCEEEEECSSEEEEEEEETTEEEEEEEEGGGEEEEEETT
T ss_pred hhcCeEEeccEEEEEEEECCEeEEEEEehHheeEeeecc
Confidence 46889999999999666666 445999999999665443
No 21
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=36.46 E-value=1e+02 Score=27.16 Aligned_cols=74 Identities=11% Similarity=0.136 Sum_probs=55.9
Q ss_pred cccceeEeeccceeEeeec-CCC------eeEEEEecccccccceeeccCCCCcEEEEEccCcccccCcceEEEecccch
Q psy17322 83 SQVNGRMFISQNYICFDSK-IEN------LVSVVIPLRDVQTIYQVDKDMESKSVEIVLHPKQYFGCDATTTYVFIVEKD 155 (414)
Q Consensus 83 ~~~~G~lyls~~~lCF~s~-~~~------~~~~~ipl~~I~~~~~vek~~~~~~i~i~t~~~~~~~~~~~~~~~f~~~~~ 155 (414)
....|+|=|++.-|-|.+. -.+ ...+.||=.||.++ +--|......|.|.+. ....+.|.+|++
T Consensus 34 s~~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a-~W~r~~rg~~LrI~~K--------~g~~~~fdGF~~ 104 (191)
T 3f5r_A 34 SKFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTV-QWSRGCRGYDLKINTK--------NQGVIQLDGFSQ 104 (191)
T ss_dssp CSSCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEE-EEEECSSSEEEEEEES--------SSCEEEEEEECG
T ss_pred CCcccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeE-EEEEccCCcEEEEEEC--------CCceEEecCCCH
Confidence 4568999999999999654 333 13489999999955 4455544778888888 578999999998
Q ss_pred HH--HHHHHHhh
Q psy17322 156 AK--RLREKKLS 165 (414)
Q Consensus 156 rd--~~~~~l~~ 165 (414)
.| .|.+.+++
T Consensus 105 ~D~~~L~~~fk~ 116 (191)
T 3f5r_A 105 DDYNLIKNDFHR 116 (191)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 65 77777764
No 22
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=34.86 E-value=64 Score=29.42 Aligned_cols=61 Identities=15% Similarity=0.295 Sum_probs=45.1
Q ss_pred ccceeEeeccceeEee-ecCCCeeEEEEecccccccceeeccCC-CCcEEEEEccCcccccCcceEEEecccchHH
Q psy17322 84 QVNGRMFISQNYICFD-SKIENLVSVVIPLRDVQTIYQVDKDME-SKSVEIVLHPKQYFGCDATTTYVFIVEKDAK 157 (414)
Q Consensus 84 ~~~G~lyls~~~lCF~-s~~~~~~~~~ipl~~I~~~~~vek~~~-~~~i~i~t~~~~~~~~~~~~~~~f~~~~~rd 157 (414)
--.|-||.-++++=|. ++ .- +.||+.+|.+| +..+... +..+.|+++ +...+.|+++...+
T Consensus 164 AkeG~LyfL~~~ilFgf~K-P~---l~i~~~dI~sv-s~Srv~~RTFdl~v~~k--------~g~e~eFsmIDq~E 226 (237)
T 3fss_A 164 TKEGTLYFLPDHIIFGFKK-PI---LLLDASDIESI-TYSSITRLTFNASLVTK--------DGEKYEFSMIDQTE 226 (237)
T ss_dssp SSEEEEEECSSEEEEESSS-SC---EEEEGGGEEEE-EEESCCSSEEEEEEEET--------TSCEEEEEEEEGGG
T ss_pred CCCeEEEEecCceEEecCC-Ce---EEEEehhEEEE-EEEeccCcEEEEEEEEC--------CCCeEEEeecCHHH
Confidence 3679999999998884 33 22 78999999966 5666544 788999888 34578888776543
No 23
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.83 E-value=1.2e+02 Score=22.92 Aligned_cols=44 Identities=14% Similarity=-0.031 Sum_probs=29.4
Q ss_pred EeeccceeEe-eecCCCeeEEEEecccccccceeeccCC----CCcEEEEEc
Q psy17322 89 MFISQNYICF-DSKIENLVSVVIPLRDVQTIYQVDKDME----SKSVEIVLH 135 (414)
Q Consensus 89 lyls~~~lCF-~s~~~~~~~~~ipl~~I~~~~~vek~~~----~~~i~i~t~ 135 (414)
..|..+.|++ .+.......-+|||..+. .|+.... ++.+.|.+.
T Consensus 29 fvL~~~~L~yy~~~~~~~~~g~i~L~~~~---~v~~~~~~~~~~~~F~i~~~ 77 (115)
T 2dn6_A 29 FVLKPNIISYYVSEDLKDKKGDILLDENC---CVESLPDKDGKKCLFLVKCF 77 (115)
T ss_dssp EEECSSCEEEESSTTCSSEEEEECCCTTC---EEEEECCCTTCCSEEEEECS
T ss_pred EEEECCEEEEeCCCCCcccCcEEEecCcE---EEEECCCCCCCeeEEEEEeC
Confidence 4556677776 333344556789999988 5554422 688999886
No 24
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=29.71 E-value=1.1e+02 Score=23.69 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=29.8
Q ss_pred EeeccceeEee-ecCCCeeEEEEecccccccceeeccCC---CCcEEEEEc
Q psy17322 89 MFISQNYICFD-SKIENLVSVVIPLRDVQTIYQVDKDME---SKSVEIVLH 135 (414)
Q Consensus 89 lyls~~~lCF~-s~~~~~~~~~ipl~~I~~~~~vek~~~---~~~i~i~t~ 135 (414)
..|..+.|++. +.......-+|||..+. .|+.... ++.+.|.+.
T Consensus 39 fvL~~~~L~yy~~~~~~~~~g~i~L~~~~---~v~~~~~~~~~~~F~i~~~ 86 (126)
T 1fao_A 39 FTLHRNELKYFKDQMSPEPIRILDLTECS---AVQFDYSQERVNCFCLVFP 86 (126)
T ss_dssp EEEETTEEEEESSTTCSSCSEEEEGGGCC---EEEEECSSSSSSEEEEEET
T ss_pred EEEECCEEEEeCCCCCCCceeEEEccceE---EEEecccCCCCCEEEEEeC
Confidence 45667777773 33334445789999988 5554432 789999987
No 25
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=23.43 E-value=2.1e+02 Score=21.85 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=38.9
Q ss_pred EeeccceeEee-ecCCCeeEEEEecccccccceeeccC------CCCcEEEEEccCcccccCcceEEEec--ccchHHHH
Q psy17322 89 MFISQNYICFD-SKIENLVSVVIPLRDVQTIYQVDKDM------ESKSVEIVLHPKQYFGCDATTTYVFI--VEKDAKRL 159 (414)
Q Consensus 89 lyls~~~lCF~-s~~~~~~~~~ipl~~I~~~~~vek~~------~~~~i~i~t~~~~~~~~~~~~~~~f~--~~~~rd~~ 159 (414)
..|..+.|++. +.......-+|+|.++. .|+... .++.+.|.+. ...|.|. +-.+++.=
T Consensus 35 fvL~~~~L~yy~~~~~~~~~g~i~l~~~~---~v~~~~~~~~~~~~~~F~i~~~---------~r~~~l~a~s~~e~~~W 102 (125)
T 1eaz_A 35 FQLDENTIGYFKSELEKEPLRVIPLKEVH---KVQECKQSDIMMRDNLFEIVTT---------SRTFYVQADSPEEMHSW 102 (125)
T ss_dssp EEECSSEEEEESSTTCSSCSEEEEGGGCC---EEEECTTHHHHTCSSEEEEECS---------SCEEEEECSSHHHHHHH
T ss_pred EEEeCCEEEEEcCCCCCcceeEEEcccce---EEeeccccccCCcCCEEEEEeC---------CcEEEEEcCCHHHHHHH
Confidence 45677778773 33333444689999998 665532 1788999886 4455554 33445544
Q ss_pred HHHHh
Q psy17322 160 REKKL 164 (414)
Q Consensus 160 ~~~l~ 164 (414)
++.|.
T Consensus 103 ~~al~ 107 (125)
T 1eaz_A 103 IKAVS 107 (125)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 26
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.11 E-value=1.4e+02 Score=22.72 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=30.2
Q ss_pred EeeccceeEe-eecCCCeeEEEEecccccccceeeccCCCCcEEEEEc
Q psy17322 89 MFISQNYICF-DSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEIVLH 135 (414)
Q Consensus 89 lyls~~~lCF-~s~~~~~~~~~ipl~~I~~~~~vek~~~~~~i~i~t~ 135 (414)
..|..+.|++ .+......+-+|||..+. .|+... ++++.|.+.
T Consensus 30 fvL~~~~L~yy~~~~~~~~~g~i~l~~~~---~v~~~~-~~~F~i~~~ 73 (115)
T 2cod_A 30 VKFDGLSISYYNNEKEMYSKGIIPLSAIS---TVRVQG-DNKFEVVTT 73 (115)
T ss_dssp EEECSSEEEEEESSCCSSCCCEEETTTEE---EEEEET-TTEEEEEES
T ss_pred EEEECCEEEEEcCCCCcccCCEEECCcce---EEEeCC-CCEEEEEeC
Confidence 5566778877 333333445689999998 666654 789999876
No 27
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=22.65 E-value=1.4e+02 Score=27.52 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=46.2
Q ss_pred eEEEEEEccccccccceeEeeccceeEeeecCCCeeEEEEecccccccceeeccC----C--CCcEEEEEccCcccccCc
Q psy17322 71 SIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDM----E--SKSVEIVLHPKQYFGCDA 144 (414)
Q Consensus 71 ~~~c~l~~~~~~~~~~G~lyls~~~lCF~s~~~~~~~~~ipl~~I~~~~~vek~~----~--~~~i~i~t~~~~~~~~~~ 144 (414)
.+.|++-. -.|-||.-++.+-|-.+ . .+-||+.+|.+| ...+.. + +.-+.|++++ +
T Consensus 166 ~Vkcs~ka------~eG~LypL~~gflF~~K-P---~~~i~~~~I~sV-~fsrvg~~~~~~rTFdl~v~~k~-------g 227 (261)
T 2gcl_A 166 AVSCSFKA------NEGYLYPLDNAFFFLTK-P---TLYIPFSDVSMV-NISRAGQTSTSSRTFDLEVVLRS-------N 227 (261)
T ss_dssp CEEEEETT------EEEEEEECSSEEEEESS-S---CEEEEGGGEEEE-EEEC--------CEEEEEEEEST-------T
T ss_pred eEEEeccC------CceEEEEecCceEEeeC-C---cEEEEhhHeeEE-EEEeccCCcccCceEEEEEEEcC-------C
Confidence 56677433 56999999998888433 2 279999999955 555531 1 5778999982 1
Q ss_pred ceEEEecccch
Q psy17322 145 TTTYVFIVEKD 155 (414)
Q Consensus 145 ~~~~~f~~~~~ 155 (414)
...+.|+++.-
T Consensus 228 ~~~~~Fs~Idr 238 (261)
T 2gcl_A 228 RGSTTFANISK 238 (261)
T ss_dssp CCEEEEEEEEG
T ss_pred CccEEEcccCH
Confidence 27889988763
No 28
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=22.58 E-value=42 Score=20.90 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=12.1
Q ss_pred cCCCCCcccchhHHHHHHH
Q psy17322 317 KNPQIGYCQAMNIVTSVFL 335 (414)
Q Consensus 317 ~np~iGY~QGMn~Iaa~LL 335 (414)
.+.-.|||||--++.-+=+
T Consensus 13 ehtmcgycqgplymtcigi 31 (40)
T 1erd_A 13 EHTMCGYCQGPLYMTCIGI 31 (40)
T ss_dssp CGGGGGGSCHHHHHHHHHH
T ss_pred cccccccccCCeeEEEEee
Confidence 3445699999766554433
No 29
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=20.31 E-value=2.6e+02 Score=20.86 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=38.5
Q ss_pred EeeccceeEe-eecCCCeeEEEEecccccccceeeccCC---CCcEEEEEccCcccccCcceEEEeccc--chHHHHHHH
Q psy17322 89 MFISQNYICF-DSKIENLVSVVIPLRDVQTIYQVDKDME---SKSVEIVLHPKQYFGCDATTTYVFIVE--KDAKRLREK 162 (414)
Q Consensus 89 lyls~~~lCF-~s~~~~~~~~~ipl~~I~~~~~vek~~~---~~~i~i~t~~~~~~~~~~~~~~~f~~~--~~rd~~~~~ 162 (414)
.-|..+.|++ .+.......-+|||..+. .+.-... ++.+.|.+. ....|.|..- .+++.=+..
T Consensus 29 fvL~~~~L~yyk~~~~~~~~~~i~L~~~~---~~~~~~~~~~~~~F~i~~~--------~~~~~~~~a~s~~e~~~Wi~a 97 (109)
T 1wgq_A 29 FVIKNKVLYTYAASEDVAALESQPLLGFT---VTLVKDENSESKVFQLLHK--------GMVFYVFKADDAHSTQRWIDA 97 (109)
T ss_dssp EEEETTEEEEESCTTCSSCSEEEECSSEE---EEECCCSSCSSSEEEEEET--------TEEEEEEECSSHHHHHHHHHH
T ss_pred EEEeCCEEEEECCCCcCccCceEECCCCE---EEECCCCCCCCcEEEEEeC--------CCeEEEEECCCHHHHHHHHHH
Confidence 4456677776 333334444789998888 4443322 689999887 3455666543 334444455
Q ss_pred Hhh
Q psy17322 163 KLS 165 (414)
Q Consensus 163 l~~ 165 (414)
|..
T Consensus 98 l~~ 100 (109)
T 1wgq_A 98 FQE 100 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
Done!