RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17322
(414 letters)
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 222 bits (567), Expect = 1e-69
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 6/217 (2%)
Query: 196 ETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEML 255
E + WE + R + +M + + +GVP R EIW + +
Sbjct: 21 EITPCLKEVTTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKH 80
Query: 256 RDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCE--IGINALRRVLTA 313
+ P V + L+ I DL R+ P HP F + G +L +L A
Sbjct: 81 QFPSKQQPKD--VPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKA 138
Query: 314 YAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCESL-LPDYYNTKVVGALVDQGV 372
Y+ + ++GYCQ ++ V + L++ SE+EAF +L L + L Y ++ +
Sbjct: 139 YSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQ 198
Query: 373 MNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLS 408
++ L+ +Y +L+ L+ + + + WFLT+F S
Sbjct: 199 LSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFAS 235
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 206 bits (525), Expect = 1e-63
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 16/212 (7%)
Query: 201 EEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDL 260
E++ W ++ + R ++ L+ GVP+A R E+W +G ++ D
Sbjct: 2 EKILYS-WGELLGKWHSNLGA-RPKGLSTLVKSGVPEALRAEVWQLLAGC-HDNQAMLDR 58
Query: 261 YAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCE--IGINALRRVLTAYAAKN 318
Y + + S I RD+HR+ P H F+ G +L ++ AY+ +
Sbjct: 59 YRILITK---------DSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYD 109
Query: 319 PQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLCES-LLPDYYNTKVVGALVDQGVMNDLI 377
IGYCQ + + +V L++ E++AF +LV + L D Y + L+
Sbjct: 110 EDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLM 169
Query: 378 EEYLPNLHEKLQNMGM-IRMISLSWFLTIFLS 408
+E LP+LH ++ + M + WFLT+F +
Sbjct: 170 QEQLPDLHSHFSDLNLEAHMYASQWFLTLFTA 201
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 189 bits (482), Expect = 5e-57
Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 24/239 (10%)
Query: 190 KPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSG 249
G E + W +M+ + ++ +L +G+P + R ++W G
Sbjct: 6 HHSSGRENLYFQGNAVLTWNNEI--LPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIG 63
Query: 250 ALNEMLRDPDLYAAMRRRVQN-----------------ERPNSNLSLSCDEIERDLHRSL 292
NE+ +L+ R + ++ S + I+ D+ R+
Sbjct: 64 --NELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTF 121
Query: 293 PEHPAFQCE-IGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSEQEAFWLLVCLC 351
P FQ + L +L AY P +GY Q M+ + +V ++ +AF L
Sbjct: 122 PNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLL 181
Query: 352 ESLLP-DYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLS 408
++ L EE LP L + + + + W T++
Sbjct: 182 NKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSK 240
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 118 bits (297), Expect = 3e-30
Identities = 39/251 (15%), Positives = 81/251 (32%), Gaps = 41/251 (16%)
Query: 190 KPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSG 249
+ ++ + +E + +++ E+ L G+P R W SG
Sbjct: 11 RENLYFQGSEREASRLDKFKQLLAG-----PNTDLEELRRLSWSGIPKPVRPMTWKLLSG 65
Query: 250 AL--------NEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCE 301
L + R Y A + R + + +I D+ R PE Q +
Sbjct: 66 YLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPEALILQPK 125
Query: 302 IGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIY------------------------ 337
+ R+L +A ++P GY Q +N + + F +
Sbjct: 126 V-TEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVL 184
Query: 338 -TSEQEAFWLLVCLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRM 396
E + +W + L + + D Y G + ++ +L+ +H L + +
Sbjct: 185 CNIEADTYWCMSKLLDG-IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYL 243
Query: 397 -ISLSWFLTIF 406
+ W +
Sbjct: 244 QFAFRWMNNLL 254
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 109 bits (274), Expect = 1e-26
Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 40/233 (17%)
Query: 212 FNRYKRGVSMYRTAEMTNLILRGVPDAKRREIWLTCSGAL--------NEMLRDPDLYAA 263
F+ + ++ ++ + G+P R +W G L + R Y
Sbjct: 11 FDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRD 70
Query: 264 MRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGY 323
+ +++ + ++ +IE D+ R+ P P +Q + N+L+R+L +A ++P GY
Sbjct: 71 SLKHTFSDQHSRDIPTW-HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGY 129
Query: 324 CQAMNIVTSVFLIY-----------------------------TSEQEAFWLLVCLCESL 354
Q +N + + F E + FW L L E +
Sbjct: 130 VQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQI 189
Query: 355 LPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMIRMI-SLSWFLTIF 406
D Y G L ++ L++ +L+ QN + + + W +
Sbjct: 190 T-DNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLL 241
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 68.9 bits (168), Expect = 3e-13
Identities = 16/179 (8%), Positives = 38/179 (21%), Gaps = 15/179 (8%)
Query: 230 LILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLH 289
+P R +W G L R+ + + + +
Sbjct: 47 SQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLD-----VLHALKVVRFVSD 101
Query: 290 RSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFL-IYTSEQEAFWLLV 348
+ + + L + P + + + + +W+
Sbjct: 102 ATPQAEVYLR----MYQLESGKLPRSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITR 157
Query: 349 CLCESLLPDYYNTKVVGALVDQGVMNDLIEEYLPNLHEKLQNMGMI-RMISLSWFLTIF 406
L Y + + L L+ ++ WF F
Sbjct: 158 RFVNQLNTKYRD----SLPQLPKAFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCF 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 3e-10
Identities = 54/383 (14%), Positives = 113/383 (29%), Gaps = 109/383 (28%)
Query: 68 LDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKD--- 124
+D Y + V F+ N+ C D ++++ ++ ++ I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFV-DNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 125 -------MESKSVEIVLHPKQYFGCDATTTYVFIVEKDAKRLREKKLSQSSISSSTSSET 177
+ SK E+V +++ Y F++ R+ S +
Sbjct: 64 TLRLFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIKTEQRQP---------SMMTRM 111
Query: 178 AEQIQGPLLN---LFKP-DVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILR 233
+ + L N +F +V +R + +K +Q + N+++
Sbjct: 112 YIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQA------------LLELRPAKNVLID 156
Query: 234 GVPDA-KRREIWLTCSGALNEMLRDPDLYAAMRRRV------QNERPNS---NLSLSCDE 283
GV + K W+ ++ + M ++ P + L +
Sbjct: 157 GVLGSGKT---WVA-----LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 284 IERDLHRSLPEHPA---FQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTSVFLIYTSE 340
I+ + S +H + + LRR+L K+ Y
Sbjct: 209 IDPNWT-SRSDHSSNIKLRIHSIQAELRRLL-----KSKP--YENC-------------- 246
Query: 341 QEAFWLLVCLCESLLPDYYNTKVVGA-------LV---DQGVMNDLIEEYLPNLHEKLQN 390
LLV L + N K A L+ + V + L ++ +
Sbjct: 247 -----LLV------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 391 MGMIRMISLSWFLTIFLSLDVKS 413
M + S L +L +
Sbjct: 296 MTLTPDEVKSLLLK-YLDCRPQD 317
Score = 46.0 bits (108), Expect = 2e-05
Identities = 62/417 (14%), Positives = 112/417 (26%), Gaps = 171/417 (41%)
Query: 20 CRILF--RLPAICLFLSPSKKTIPPLTRDLNARAESEACRIL--------FRLPATEKLD 69
C+IL R + FLS + T L E +L LP E L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLT 324
Query: 70 GS------IAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDK 123
+ IA + N+ + V ++
Sbjct: 325 TNPRRLSIIAESIRDGLATWD---------NW-----------------KHVN-CDKLTT 357
Query: 124 DMESKSVEIVLHP---KQYFGCDATTTYVFIVEKDAKRLREKKLSQSSISSSTSSETAEQ 180
+ES S+ VL P ++ F + + A I +
Sbjct: 358 IIES-SLN-VLEPAEYRKMF------DRLSVFPPSAH-----------IPTIL------- 391
Query: 181 IQGPLLNLFKPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYRTAEMTNLILRGVPDAKR 240
L+L D + V N +LH K L+ + K
Sbjct: 392 -----LSLIWFD--VIKSDVMVVVN---KLH----KYS-----------LVEK---QPKE 423
Query: 241 REIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQC 300
I + P +Y ++ +++NE LHRS+ +H
Sbjct: 424 STISI------------PSIYLELKVKLENEY--------------ALHRSIVDH----- 452
Query: 301 EIGINALRRVLTAYAAKNPQ-------IGY-------CQAMNIVTSVFLIYTSEQEAFWL 346
N + + IG+ + M + VFL + +L
Sbjct: 453 ---YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR------FL 503
Query: 347 LVCLCESLLPDYYNTKVVGALVD---------------QGVMNDLIEEYLPNLHEKL 388
+ + ++ L + ++N ++ ++LP + E L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-DFLPKIEENL 559
Score = 44.5 bits (104), Expect = 5e-05
Identities = 65/392 (16%), Positives = 130/392 (33%), Gaps = 120/392 (30%)
Query: 64 ATEKLDGSIAAQLYTPY-NRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQ--TIYQ 120
TE+ S+ ++Y +R + ++F N + L ++ LR + I
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLID- 156
Query: 121 VDKDME--SKSV-------EIVLHPKQYFG--------CDATTTYVFIVEKDAKRLREKK 163
+ K+ + K F C++ T + +++K ++
Sbjct: 157 ---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 164 LSQSSISSSTSSETAEQIQGPLLNLFKPDVGIETRSKEEVKNKQWELHFNRYKRGVSMYR 223
S+S SS+ IQ L L K Y+ +
Sbjct: 214 TSRSDHSSNIKLRI-HSIQAELRRLLKS---------------------KPYENCL---- 247
Query: 224 TAEMTNLILRGVPDAKRREIW----LTCSGALNEML---RDPD----LYAAMRRRVQNER 272
L+L V +AK W L+C ++L R L AA + +
Sbjct: 248 ------LVLLNVQNAK---AWNAFNLSC-----KILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 273 PNSNLSLSCDEIERDLHR-------SLPE-----HPAFQCEIGINALRRVLTAYAAKNPQ 320
+ L+ DE++ L + LP +P + I I R A
Sbjct: 294 HSMTLTP--DEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSI-IAESIRDGLATWDNWKH 349
Query: 321 IGYCQAMNIV-TSVFLIYTSE-QEAFWLLVCLCESLLPDYYN--TKVVGAL-------VD 369
+ + I+ +S+ ++ +E ++ F L S+ P + T ++ +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRL-----SVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 370 QGVMND-----LIEE-------YLPNLHEKLQ 389
V+N L+E+ +P+++ +L+
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 35.0 bits (80), Expect = 0.042
Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 42 PLTRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFISQNYICFDSK 101
L+ D N EA R+ +L P ++ G Y +
Sbjct: 192 QLSVDHNLLNAEEAARL-------FRLGLMAQNFEGVPLYSTRCIGNYLGKAGYKDCNFL 244
Query: 102 IENLVSVVIPLRDVQTIYQVDKDME 126
VI ++ Q+
Sbjct: 245 SSATAEPVIFEPEIVGGIQITPACR 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.34
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 61/164 (37%)
Query: 47 LNARAE----SEACRILF-R-------LPATE--KLDGSIAAQLYTPYNRSQVN-GRMFI 91
L + A+ ++F R +P E + + + A +N GR+
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA----------INPGRVAA 1819
Query: 92 SQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEIV---LHPKQYFGCDATTTY 148
S ++ +V +V K VEIV + +QY
Sbjct: 1820 S----FSQEALQYVVE------------RVGKR-TGWLVEIVNYNVENQQY--------- 1853
Query: 149 VFI------VEKDAKRLREKKLSQSSISSSTSSETAEQIQGPLL 186
V ++ L KL + I S + E+++G L
Sbjct: 1854 V-AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 32.3 bits (73), Expect = 0.35
Identities = 55/372 (14%), Positives = 103/372 (27%), Gaps = 175/372 (47%)
Query: 98 FDSKIENLVSVVIPLR--DVQTI-YQVDKDMES---KSVEIVLHPKQYFGCDATTTYVFI 151
F++ L D+ + ++ ++ ++ K+ E++ K Y A
Sbjct: 91 FENCY---------LEGNDIHALAAKLLQENDTTLVKTKELI---KNYI--TARIM---- 132
Query: 152 VEKDAKRLREKKLSQSSISSSTSSETAEQI-----QGPLLNLFKPDVGIETRSKEEVKNK 206
AKR K S S++ + A+ + QG + F+ E R
Sbjct: 133 ----AKR-PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-----ELR-------- 174
Query: 207 QWELHFNRYKRGVS--MYRTAEMTNLILRGVPDAKRR-------EIWL------------ 245
+L + Y V + +AE + ++R DA++ WL
Sbjct: 175 --DL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 246 --------------------TCS------GALNEMLR--------------------DPD 259
T G L L+
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 260 LYAAMRR----------RVQNERPNSNLSLSC--DEIE------------RDLHR----- 290
+ ++R+ R PN++L S D +E +L +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 291 -------SLPEHPAFQCEIG-INALRR-VLTAYAA------------KNP------QIGY 323
LP Q EI +N + V++ K P +I +
Sbjct: 352 YVNKTNSHLPAGK--QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 324 CQAMNIVTSVFL 335
+ ++ FL
Sbjct: 410 SERKLKFSNRFL 421
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.4
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 22/40 (55%)
Query: 153 EKDAKRLREKKLSQSSISSSTSSETAEQIQGPLLNLFKPD 192
EK + L KKL Q+S L L+ D
Sbjct: 18 EK--QAL--KKL-QAS-----------------LKLYADD 35
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A
{Sphingomonas SP} PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A*
1y3q_A 1j1n_A* 1kwh_A
Length = 502
Score = 29.8 bits (67), Expect = 1.9
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 355 LPD----YYNTKVVGALVDQGV---MNDLIEEYLPNLHEKLQNMGMIRM 396
LPD +G +N LI++ PNL + ++
Sbjct: 67 LPDIVGGDNLKDKFIRYGMEGAFIPLNKLIDQNAPNLKAFFKTHPEVQR 115
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 29.6 bits (67), Expect = 2.2
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 250 ALNEMLRDPDLYAAM----RRRVQNE 271
L E+L DP AAM R V+ E
Sbjct: 337 LLIELLDDPIRRAAMGAAGRAHVEAE 362
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 28.9 bits (65), Expect = 3.4
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 10/41 (24%)
Query: 235 VPDAKRREIWLTCSGALNEMLRDPDLYAAM----RRRVQNE 271
V DA + +L+ P++ M + RV+
Sbjct: 363 VRDAN------EAVEVVLYLLKHPEVSKEMGAKAKERVRKN 397
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.2 bits (62), Expect = 3.5
Identities = 12/115 (10%), Positives = 43/115 (37%), Gaps = 5/115 (4%)
Query: 91 ISQNYICFDSKIENLVSVVIPLRDVQT-IYQVDKDMESKSVEIVLHPKQYFGCDATTTYV 149
+ + + L + +I +D + ++ M S+ +V + + V
Sbjct: 45 LVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMV 104
Query: 150 FIVEKD----AKRLREKKLSQSSISSSTSSETAEQIQGPLLNLFKPDVGIETRSK 200
++ +RL +++ S++ + + +E + + ++ D+ + +
Sbjct: 105 VVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVREND 159
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 28.6 bits (65), Expect = 3.5
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 31/113 (27%)
Query: 97 CFDSKIENLVSV---VIPLRDVQTIYQ--VDKDMESKSVEIVLHPKQYFGCDATTTYVFI 151
F+ +++ V V P+RD++ I++ KD E +
Sbjct: 126 AFED--DDITHVEGSVDPIRDIEIIHEELQLKDEE--MIG-----PIIDK---------- 166
Query: 152 VEKDAKRLREKKLSQSSISSSTSSETAEQIQGPLLNLFKPDVGIETRSKEEVK 204
+EK A R +KKL + +++ +++ KP + +E++
Sbjct: 167 LEKVAVRGGDKKLKP-------EYDIMCKVKSWVIDQKKPVRFYHDWNDKEIE 212
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
carbamoyl phosphate, transferas catalytic cycle; 2.10A
{Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Length = 304
Score = 27.9 bits (63), Expect = 5.9
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 251 LNEMLRDPDLYAAMRRRVQNERPNSNLSL 279
++E + D M R+QNER S +S
Sbjct: 197 MDEAVESSD--VVMLLRIQNERHQSAVSQ 223
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 6.4
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 153 EKDAKRLREKKLSQSSISSSTSSETAEQIQGPLLNLFKPDVGIETRSKEEVKNKQWELHF 212
E+ KRL+E + S E E+ + L + E K ++ N+ + F
Sbjct: 92 EEQRKRLQELD----AASKVMEQEWREKAKKDLEEWNQ--RQSEQVEKNKINNRIADKAF 145
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase;
1.7A {Populus trichocarpa}
Length = 261
Score = 27.8 bits (62), Expect = 7.2
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 314 YAAKNPQIGYCQA 326
Y AK + G+ Q+
Sbjct: 236 YLAKGGRFGFMQS 248
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 27.8 bits (61), Expect = 8.0
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 42 PLTRDLNARAESEACRILFRLPATEKLDGSIAAQLYTPYNRSQVNGRMFIS 92
L+ D NA+ E E R+ P E A+ +R + G +
Sbjct: 238 TLSNDHNAQNERELQRLKLEHPKNE-------AKSVVKQDR--LLGLLMPF 279
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.393
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,159,200
Number of extensions: 361800
Number of successful extensions: 765
Number of sequences better than 10.0: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 33
Length of query: 414
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 318
Effective length of database: 4,021,377
Effective search space: 1278797886
Effective search space used: 1278797886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)