RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17322
(414 letters)
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 90.3 bits (223), Expect = 9e-22
Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 36/175 (20%)
Query: 220 SMYRTAEMTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQNERPNSNLSL 279
++ ++ + G+P R +W G L + + + +R+ + S
Sbjct: 18 TIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSD 77
Query: 280 SC-------DEIERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIVTS 332
+IE D+ R+ P P +Q + N+L+R+L +A ++P GY Q +N + +
Sbjct: 78 QHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVT 137
Query: 333 VFLIYTS-----------------------------EQEAFWLLVCLCESLLPDY 358
F E + FW L L E + +Y
Sbjct: 138 PFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36,
VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 31.4 bits (71), Expect = 0.076
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 79 PYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEIVLHPKQ 138
G + +S + + + + + + I L + I + + KS +IV+H
Sbjct: 28 EEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGI-GKSAKIVVHLHP 86
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 30.9 bits (69), Expect = 0.16
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 365 GALVDQGVMNDLIEEYLPNLHEKLQNMGM-IRMISLSWFLTIFLS 408
G L ++ L++ +L+ QN + + W + +
Sbjct: 4 GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMR 48
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 27.1 bits (59), Expect = 4.0
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 247 CSGALNEMLRDPDLYAAMRRRVQNERPNSNLSLSCDEIERDLHRSLPEHPAFQCEIGINA 306
N++L Y + R Q + + ER S P + +G
Sbjct: 212 RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPY 271
Query: 307 LRRVLT 312
L++VL
Sbjct: 272 LQKVLN 277
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 25.0 bits (55), Expect = 4.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 223 RTAEMTNLILRGVPDAKRREIW 244
R NLI+ GVP++++ +I
Sbjct: 46 RITANQNLIIAGVPESEKAKIE 67
>d1q0qa3 d.81.1.3 (A:126-274) 1-deoxy-D-xylulose-5-phosphate
reductoisomerase {Escherichia coli [TaxId: 562]}
Length = 149
Score = 26.1 bits (57), Expect = 5.6
Identities = 6/69 (8%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 71 SIAAQLYTPYNRSQVNGRMFISQNYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSV 130
+ +++ + + + I DS +++ + + + ++ +
Sbjct: 69 PLRDLATMTPDQACRHPNWSMGRK-ISVDSA--TMMNKGLEYIEARWLFNASASQ----M 121
Query: 131 EIVLHPKQY 139
E+++HP+
Sbjct: 122 EVLIHPQSV 130
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 266
Score = 26.0 bits (57), Expect = 8.1
Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 109 VIPLRDVQTIYQVDKDMESKSV-EIVL 134
VI L+DV +IY++ ++S+ + + +
Sbjct: 235 VISLKDVDSIYKIPGLLKSQGLDDYIC 261
>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 412
Score = 26.2 bits (57), Expect = 8.4
Identities = 20/185 (10%), Positives = 48/185 (25%), Gaps = 8/185 (4%)
Query: 227 MTNLILRGVPDAKRREIWLTCSGALNEMLRDPDLYAAMRRRVQN--ERPNSNLSLSCDEI 284
+ ++ R + L + L E L D + ++ ER +
Sbjct: 39 LIRVLERLRAEGVEAPFTLGITPILAEQLADARIKEGFWAYAKDRLERAQGDYQRYRGTA 98
Query: 285 ERDLHRSLPEHPAFQCEIGINALRRVLTAYAAKNPQIGYCQAMNIV-TSVFLIYTSEQEA 343
R + ++ A+ K + G + + T + EA
Sbjct: 99 LEASARHQVAFWELTLDHFQRLSGDLVAAF-RKAEEGGQVELITSNATHGYSPLLGYDEA 157
Query: 344 FWLLVCLCESLLPDYYNTKVVGA-LVDQGVMNDLIEEYLPNLHEKLQNMGMIRMI---SL 399
W + S ++ G L + + + G+ ++ +
Sbjct: 158 LWAQIKTGVSTYRRHFAKDPTGFWLPEMAYRPKGPWKPPVEGPPEGVRPGVDELLMRAGI 217
Query: 400 SWFLT 404
+
Sbjct: 218 RYTFV 222
>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 272
Score = 26.0 bits (57), Expect = 9.0
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 109 VIPLRDVQTIYQVDKDMESKSV-EIVL 134
V V+ +Y+V +E + + V
Sbjct: 236 VFSSPTVEHLYEVPLLLEEQGLGRAVE 262
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma
genitalium [TaxId: 2097]}
Length = 137
Score = 25.4 bits (55), Expect = 9.6
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 94 NYICFDSKIENLVSVVIPLRDVQTIYQVDKDMESKSVEIV 133
++IC + + SV +PL ++ I ++ KD E++ +EI
Sbjct: 26 DFICSTRESDTFSSVDVPLEPIKNIIEITKD-ENQQIEIT 64
>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 26.0 bits (57), Expect = 9.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 109 VIPLRDVQTIYQVDKDMES 127
VI + DV +IY+V +E
Sbjct: 241 VICVHDVSSIYRVPLLLEE 259
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.393
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,490,528
Number of extensions: 68351
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 12
Length of query: 414
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,199,356
Effective search space: 390990056
Effective search space used: 390990056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)