BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17325
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 175/385 (45%), Gaps = 91/385 (23%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYI 92
C G C+ C CTC G L+ D TCQD+NEC + GYCSQ CTN++G++
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQ 65
Query: 93 CSCNEGYVLEYDNHTCKAINHSAAFLIISNR------------HSILVADLEEKGK---D 137
C C GY L D +CKA+ L+ +NR +++L+ +LE
Sbjct: 66 CWCEAGYELRPDRRSCKALG-PEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFH 124
Query: 138 HR-----------------------AQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIE 174
HR +++V +GL+ GLA DW+ +YW DS +RIE
Sbjct: 125 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 184
Query: 175 VCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS 234
V + +G +R VL ++ +PR + L P GT ++WTDWG PRIE MDGS R I
Sbjct: 185 VANLDGAHRKVLLWQSLEKPRAIALHPMEGT--IYWTDWGNTPRIEASSMDGSGRRIIAD 242
Query: 235 TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294
T ++WPNGLT+D A RR+Y+ D+K I+
Sbjct: 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIE------------------------------- 271
Query: 295 KIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM 354
+AN+DGS+ ++S L A+ + LY WTDW
Sbjct: 272 ---RANLDGSHRKAVISQGLPHPFAITVFEDSLY-----------WTDWHTKSINSANKF 317
Query: 355 DGSNRSTIISTKIYWPNGLTLDIAT 379
G N+ II K+++P +DI T
Sbjct: 318 TGKNQE-IIRNKLHFP----MDIHT 337
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 153/302 (50%), Gaps = 47/302 (15%)
Query: 4 RCVNLTKVCDGKTDCPNGADEG-PGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
C+ L KVC+ DC + +DE C EC G CS+ C+ +G C CP G L
Sbjct: 13 ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 72
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISN 122
C+D++EC+ P CSQ+C N +G Y C C EG+ L+ CKA+ S A+L +N
Sbjct: 73 AQR-RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG-SIAYLFFTN 130
Query: 123 RHSI------------LVADLE-----------------------------EKGKDHRAQ 141
RH + L+ +L ++ +
Sbjct: 131 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 190
Query: 142 DIVVS-GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLD 200
D V+S + +GLA DWI +IYW DS L + V D G R L ++N ++PR +++D
Sbjct: 191 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD 250
Query: 201 PSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 260
P G +++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y+ DSKL
Sbjct: 251 PVHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 308
Query: 261 FI 262
I
Sbjct: 309 SI 310
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDN--ITQPRGMMLD 200
+V + G+ D + G +YW+DS+L+ I D NG NR + +D + P + +
Sbjct: 280 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 339
Query: 201 PSPGTRWLFWTD 212
+FWTD
Sbjct: 340 EDK----VFWTD 347
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 153/301 (50%), Gaps = 47/301 (15%)
Query: 5 CVNLTKVCDGKTDCPNGADEG-PGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
C+ L KVC+ DC + +DE C EC G CS+ C+ +G C CP G L
Sbjct: 286 CITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA 345
Query: 64 DSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNR 123
C+D++EC+ P CSQ+C N +G Y C C EG+ L+ CKA+ S A+L +NR
Sbjct: 346 QR-RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG-SIAYLFFTNR 403
Query: 124 HSI------------LVADLE-----------------------------EKGKDHRAQD 142
H + L+ +L ++ + D
Sbjct: 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 463
Query: 143 IVVS-GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
V+S + +GLA DWI +IYW DS L + V D G R L ++N ++PR +++DP
Sbjct: 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 523
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261
G +++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y+ DSKL
Sbjct: 524 VHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581
Query: 262 I 262
I
Sbjct: 582 I 582
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/472 (20%), Positives = 164/472 (34%), Gaps = 140/472 (29%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
++ C++ + CDG DC + +DE C A+ TC P E
Sbjct: 202 LSGECIHSSWRCDGGPDCKDKSDE-----------------ENC------AVATCRPDEF 238
Query: 61 LSND------------SVTCQDMNE---------CEQP---------------------- 77
+D C+DM++ CE P
Sbjct: 239 QCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARD 298
Query: 78 ---------------------GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAA 116
G CS +C + K Y C C +G+ L C+ I+
Sbjct: 299 CRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQD 357
Query: 117 FLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVC 176
S L + + ++ D V +AY +++ + R
Sbjct: 358 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY------LFFTNRHEVRKMTL 411
Query: 177 DENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE----NPRIERIGMDGSNRSTI 232
D + ++ N+ + LD + ++W+D + + +++R S+ T+
Sbjct: 412 DRSEYTSLIPNLRNV-----VALDTEVASNRIYWSDLSQRMICSTQLDR-AHGVSSYDTV 465
Query: 233 ISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRK----------- 281
IS I P+GL +D +Y+ DS L + S+ V T+FR+
Sbjct: 466 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTV---SVADTKGVKRKTLFRENGSKPRAIVVD 522
Query: 282 -----LYWIDEGGNGVPLKIGKANMDGSNASILVSG--QLYEALALDLENGMLYYSTLKC 334
+YW D G P KI K ++G + LV+ Q + LDL +G LY
Sbjct: 523 PVHGFMYWTDW---GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY------ 573
Query: 335 TRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386
W D + I I ++G NR TI+ + + +L + +V++ D
Sbjct: 574 -----WVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 619
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 152/302 (50%), Gaps = 47/302 (15%)
Query: 4 RCVNLTKVCDGKTDCPNGADEG-PGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
C+ L KVC+ DC + +DE C EC G CS+ C+ +G C CP G L
Sbjct: 267 ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 326
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISN 122
C+D++EC+ P CSQ+C N +G Y C C EG+ L+ CKA+ S A+L +N
Sbjct: 327 AQR-RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG-SIAYLFFTN 384
Query: 123 RHSI------------LVADLE-----------------------------EKGKDHRAQ 141
RH + L+ +L ++ +
Sbjct: 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 444
Query: 142 DIVVS-GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLD 200
D V+S + +GLA DWI +IYW DS L + V D G R L ++ ++PR +++D
Sbjct: 445 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVD 504
Query: 201 PSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 260
P G +++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y+ DSKL
Sbjct: 505 PVHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 562
Query: 261 FI 262
I
Sbjct: 563 SI 564
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDN--ITQPRGMMLD 200
+V + G+ D + G +YW+DS+L+ I D NG NR + +D + P + +
Sbjct: 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 593
Query: 201 PSPGTRWLFWTD 212
+FWTD
Sbjct: 594 EDK----VFWTD 601
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 95/449 (21%), Positives = 153/449 (34%), Gaps = 59/449 (13%)
Query: 2 ADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN--------------TCHPT 47
+RC+ CDG+ DC NG+DE GC C C + C
Sbjct: 58 VNRCIPQFWRCDGQVDCDNGSDE-QGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDG 116
Query: 48 PLGALC---TCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYD 104
A C TC P N S + C+ C + + C YV + D
Sbjct: 117 SDEASCPVLTCGPASFQCNSSTCIPQLWACDN----DPDCEDGSDEWPQRCRGLYVFQGD 172
Query: 105 NHTCKAINHSAAFLIISNR--HSILVADLEEKGKDHRAQD---IVVSGLDLVEGLAYDWI 159
+ C A F +S HS D KD ++ + D + + I
Sbjct: 173 SSPCSAFE----FHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCI 228
Query: 160 GGHIYWLDSRLNRIEVCDENGTNRIVLA----KDNITQPRGMMLDPSPGTRWLFWTDWGE 215
G D + ++ DE G + L K + LD DW +
Sbjct: 229 HGS-RQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMA-RDCRDWSD 286
Query: 216 NPRIERIGM------DGSNRSTIISTKIYW----PNGLTLDIATRRVYFADSKLDFIDCK 265
P I+ G +G KI + P+G L +A RR D D C
Sbjct: 287 EP-IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCS 344
Query: 266 SLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL----YEALALD 321
L + Y + + +D A + +N + L Y +L +
Sbjct: 345 QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN 404
Query: 322 LENGMLYYSTLKCTRWLFWTDWGE----NPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 377
L N + + + R ++W+D + + +++R S+ T+IS I P+GL +D
Sbjct: 405 LRNVVALDTEVASNR-IYWSDLSQRMICSTQLDR-AHGVSSYDTVISRDIQAPDGLAVDW 462
Query: 378 ATRRVYFADSKLDFIDFCNYDGTGRQQVI 406
+Y+ DS L + + G R+ +
Sbjct: 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLF 491
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 159/347 (45%), Gaps = 91/347 (26%)
Query: 71 MNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNR------- 123
+NEC + GYCSQ CTN++G++ C C GY L D +CKA+ L+ +NR
Sbjct: 1 VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG-PEPVLLFANRIDIRQVL 59
Query: 124 -----HSILVADLEEKGK---DHR-----------------------AQDIVVSGLDLVE 152
+++L+ +LE HR +++V +GL+
Sbjct: 60 PHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG 119
Query: 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD 212
GLA DW+ +YW DS +RIEV + +G +R VL ++ +PR + L P GT ++WTD
Sbjct: 120 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT--IYWTD 177
Query: 213 WGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN 272
WG PRIE MDGS R I T ++WPNGLT+D A RR+Y+ D+K I+
Sbjct: 178 WGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE--------- 228
Query: 273 VNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTL 332
+AN+DGS+ ++S L A+ + LY
Sbjct: 229 -------------------------RANLDGSHRKAVISQGLPHPFAITVFEDSLY---- 259
Query: 333 KCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIAT 379
WTDW G N+ II K+++P +DI T
Sbjct: 260 -------WTDWHTKSINSANKFTGKNQE-IIRNKLHFP----MDIHT 294
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 139/273 (50%), Gaps = 46/273 (16%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC G CS+ C+ +G C CP G L C+D++EC+ P CSQ+C N +G Y
Sbjct: 2 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 92 ICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSI------------LVADLE------- 132
C C EG+ L+ CKA+ S A+L +NRH + L+ +L
Sbjct: 61 KCQCEEGFQLDPHTKACKAVG-SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDT 119
Query: 133 ----------------------EKGKDHRAQDIVVS-GLDLVEGLAYDWIGGHIYWLDSR 169
++ + D V+S + +GLA DWI +IYW DS
Sbjct: 120 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV 179
Query: 170 LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229
L + V D G R L ++N ++PR +++DP G +++WTDWG +I++ G++G +
Sbjct: 180 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDI 237
Query: 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFI 262
++++ I WPNG+TLD+ + R+Y+ DSKL I
Sbjct: 238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDN--ITQPRGMMLD 200
+V + G+ D + G +YW+DS+L+ I D NG NR + +D + P + +
Sbjct: 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 299
Query: 201 PSPGTRWLFWTD 212
+FWTD
Sbjct: 300 EDK----VFWTD 307
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 116/211 (54%), Gaps = 47/211 (22%)
Query: 133 EKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT 192
E K Q++VVSGL +GLA DW+G +YW DS NRIEV + +G+ R VL +
Sbjct: 60 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 119
Query: 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 252
QPR + LDPS G +++WTDWGE P+IER GMDGS+R II+++IYWPNGLTLD +++
Sbjct: 120 QPRAIALDPSSG--FMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL 177
Query: 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312
Y+AD+KL+FI K+N+DG+N +V G
Sbjct: 178 YWADAKLNFIH----------------------------------KSNLDGTNRQAVVKG 203
Query: 313 QLYEALALDLENGMLYYSTLKCTRWLFWTDW 343
L AL L +LY WTDW
Sbjct: 204 SLPHPFALTLFEDILY-----------WTDW 223
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 86/144 (59%), Gaps = 17/144 (11%)
Query: 280 RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRW 337
KLYW D N +I +N+DGS +L +L + A+ALD +G +Y
Sbjct: 88 EKLYWTDSETN----RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY--------- 134
Query: 338 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397
WTDWGE P+IER GMDGS+R II+++IYWPNGLTLD +++Y+AD+KL+FI N
Sbjct: 135 --WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 192
Query: 398 DGTGRQQVILIDLMVEFTNDLMGD 421
DGT RQ V+ L F L D
Sbjct: 193 DGTNRQAVVKGSLPHPFALTLFED 216
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 27/152 (17%)
Query: 294 LKIGKANMDGSNASILVSGQLYEALALDL--ENGMLYYSTLKCTRWLFWTDWGENPRIER 351
L++ A NA+I+V G L +A A+D +G++Y W+D E I+R
Sbjct: 12 LRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIY-----------WSDVSEEA-IKR 58
Query: 352 IGMDGSNR-STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDL 410
+ + ++ + + P+GL D ++Y+ DS+ + I+ N DG+ R+ + +L
Sbjct: 59 TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 118
Query: 411 MVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+ A+ALD +G +Y++ G
Sbjct: 119 -----------DQPRAIALDPSSGFMYWTDWG 139
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 116/211 (54%), Gaps = 47/211 (22%)
Query: 133 EKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT 192
E K Q++VVSGL +GLA DW+G +YW DS NRIEV + +G+ R VL +
Sbjct: 63 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 252
QPR + LDPS G +++WTDWGE P+IER GMDGS+R II+++IYWPNGLTLD +++
Sbjct: 123 QPRAIALDPSSG--FMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL 180
Query: 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312
Y+AD+KL+FI K+N+DG+N +V G
Sbjct: 181 YWADAKLNFIH----------------------------------KSNLDGTNRQAVVKG 206
Query: 313 QLYEALALDLENGMLYYSTLKCTRWLFWTDW 343
L AL L +LY WTDW
Sbjct: 207 SLPHPFALTLFEDILY-----------WTDW 226
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 86/144 (59%), Gaps = 17/144 (11%)
Query: 280 RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRW 337
KLYW D N +I +N+DGS +L +L + A+ALD +G +Y
Sbjct: 91 EKLYWTDSETN----RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY--------- 137
Query: 338 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397
WTDWGE P+IER GMDGS+R II+++IYWPNGLTLD +++Y+AD+KL+FI N
Sbjct: 138 --WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195
Query: 398 DGTGRQQVILIDLMVEFTNDLMGD 421
DGT RQ V+ L F L D
Sbjct: 196 DGTNRQAVVKGSLPHPFALTLFED 219
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 27/152 (17%)
Query: 294 LKIGKANMDGSNASILVSGQLYEALALDL--ENGMLYYSTLKCTRWLFWTDWGENPRIER 351
L++ A NA+I+V G L +A A+D +G++Y W+D E I+R
Sbjct: 15 LRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIY-----------WSDVSEEA-IKR 61
Query: 352 IGMDGSNR-STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDL 410
+ + ++ + + P+GL D ++Y+ DS+ + I+ N DG+ R+ + +L
Sbjct: 62 TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 121
Query: 411 MVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+ A+ALD +G +Y++ G
Sbjct: 122 -----------DQPRAIALDPSSGFMYWTDWG 142
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 116/211 (54%), Gaps = 47/211 (22%)
Query: 133 EKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT 192
E K Q++VVSGL +GLA DW+G +YW DS NRIEV + +G+ R VL +
Sbjct: 60 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 119
Query: 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 252
QPR + LDPS G +++WTDWGE P+IER GMDGS+R II+++IYWPNGLTLD +++
Sbjct: 120 QPRAIALDPSSG--FMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL 177
Query: 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312
Y+AD+KL+FI K+N+DG+N +V G
Sbjct: 178 YWADAKLNFIH----------------------------------KSNLDGTNRQAVVKG 203
Query: 313 QLYEALALDLENGMLYYSTLKCTRWLFWTDW 343
L AL L +LY WTDW
Sbjct: 204 SLPHPFALTLFEDILY-----------WTDW 223
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 145/334 (43%), Gaps = 63/334 (18%)
Query: 38 GLCSNTCHPTPLGAL--CTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSC 95
G CS+ C +P+ C CP G L + TC+D + ++ + S
Sbjct: 272 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD--GATELLLLARRTDLRRISLDTPD 329
Query: 96 NEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHR------AQDIVVSGLD 149
VL+ ++ I H+ A I D E + +Q +V + +
Sbjct: 330 FTDIVLQLED-----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 384
Query: 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLF 209
+G+A DW+ ++YW D+ +RIEV NGT R +L +++ +PR ++LDP G +++
Sbjct: 385 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVG--YMY 442
Query: 210 WTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI 269
WTDWGE P+IER +DGS+R +++T + WPNGL LD ++Y+ D+K D
Sbjct: 443 WTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTD--------- 493
Query: 270 KTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYY 329
KI N DG+ +LV ++ L +Y
Sbjct: 494 -------------------------KIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVY- 527
Query: 330 STLKCTRWLFWTDWGENPRIERIGMDGSNRSTII 363
WTDW + IER+ + R II
Sbjct: 528 ----------WTDW-QRRSIERVHKRSAEREVII 550
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 86/143 (60%), Gaps = 17/143 (11%)
Query: 281 KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWL 338
KLYW D N +I +N+DGS +L +L + A+ALD +G +Y
Sbjct: 89 KLYWTDSETN----RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY---------- 134
Query: 339 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398
WTDWGE P+IER GMDGS+R II+++IYWPNGLTLD +++Y+AD+KL+FI N D
Sbjct: 135 -WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 193
Query: 399 GTGRQQVILIDLMVEFTNDLMGD 421
GT RQ V+ L F L D
Sbjct: 194 GTNRQAVVKGSLPHPFALTLFED 216
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 148/346 (42%), Gaps = 95/346 (27%)
Query: 78 GYCSQMC--TNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKG 135
G CS +C + K Y C+C G L + TCK + + L+++ R
Sbjct: 272 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK--DGATELLLLARR------------ 317
Query: 136 KDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPR 195
+ L RI + + T+ IVL ++I
Sbjct: 318 --------------------------------TDLRRISLDTPDFTD-IVLQLEDIRHAI 344
Query: 196 GMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 255
+ DP G +++WTD E I R +DGS +++ +I P+G+ +D
Sbjct: 345 AIDYDPVEG--YIYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVD--------- 392
Query: 256 DSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY 315
+ R LYW D G + +I ++G+ IL+S L
Sbjct: 393 ---------------------WVARNLYWTDTGTD----RIEVTRLNGTMRKILISEDLE 427
Query: 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTL 375
E A+ L+ + Y ++WTDWGE P+IER +DGS+R +++T + WPNGL L
Sbjct: 428 EPRAIVLDPMVGY---------MYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLAL 478
Query: 376 DIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGD 421
D ++Y+ D+K D I+ N DGTGR+ ++ + F L+GD
Sbjct: 479 DYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD 524
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 27/157 (17%)
Query: 289 GNGVPLKIGKANMDGSNASILVSGQLYEALALDL--ENGMLYYSTLKCTRWLFWTDWGEN 346
N L++ A NA+I+V G L +A A+D +G++Y W+D E
Sbjct: 7 ANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIY-----------WSDVSEE 54
Query: 347 PRIERIGMDGSNR-STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQV 405
I+R + + ++ + + P+GL D ++Y+ DS+ + I+ N DG+ R+ +
Sbjct: 55 A-IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 113
Query: 406 ILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+L + A+ALD +G +Y++ G
Sbjct: 114 FWQEL-----------DQPRAIALDPSSGFMYWTDWG 139
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
C + G CS+ C P G C CP G L +D TC
Sbjct: 573 CAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 608
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 116/211 (54%), Gaps = 47/211 (22%)
Query: 133 EKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT 192
E K Q++VVSGL +GLA DW+G +YW DS NRIEV + +G+ R VL +
Sbjct: 68 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 127
Query: 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 252
QPR + LDPS G +++WTDWGE P+IER GMDGS+R II+++IYWPNGLTLD +++
Sbjct: 128 QPRAIALDPSSG--FMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL 185
Query: 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312
Y+AD+KL+FI K+N+DG+N +V G
Sbjct: 186 YWADAKLNFIH----------------------------------KSNLDGTNRQAVVKG 211
Query: 313 QLYEALALDLENGMLYYSTLKCTRWLFWTDW 343
L AL L +LY WTDW
Sbjct: 212 SLPHPFALTLFEDILY-----------WTDW 231
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 145/334 (43%), Gaps = 63/334 (18%)
Query: 38 GLCSNTCHPTPLGAL--CTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSC 95
G CS+ C +P+ C CP G L + TC+D + ++ + S
Sbjct: 280 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD--GATELLLLARRTDLRRISLDTPD 337
Query: 96 NEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHR------AQDIVVSGLD 149
VL+ ++ I H+ A I D E + +Q +V + +
Sbjct: 338 FTDIVLQLED-----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 392
Query: 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLF 209
+G+A DW+ ++YW D+ +RIEV NGT R +L +++ +PR ++LDP G +++
Sbjct: 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVG--YMY 450
Query: 210 WTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI 269
WTDWGE P+IER +DGS+R +++T + WPNGL LD ++Y+ D+K D
Sbjct: 451 WTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTD--------- 501
Query: 270 KTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYY 329
KI N DG+ +LV ++ L +Y
Sbjct: 502 -------------------------KIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVY- 535
Query: 330 STLKCTRWLFWTDWGENPRIERIGMDGSNRSTII 363
WTDW + IER+ + R II
Sbjct: 536 ----------WTDW-QRRSIERVHKRSAEREVII 558
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 86/143 (60%), Gaps = 17/143 (11%)
Query: 281 KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWL 338
KLYW D N +I +N+DGS +L +L + A+ALD +G +Y
Sbjct: 97 KLYWTDSETN----RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY---------- 142
Query: 339 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398
WTDWGE P+IER GMDGS+R II+++IYWPNGLTLD +++Y+AD+KL+FI N D
Sbjct: 143 -WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201
Query: 399 GTGRQQVILIDLMVEFTNDLMGD 421
GT RQ V+ L F L D
Sbjct: 202 GTNRQAVVKGSLPHPFALTLFED 224
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 148/346 (42%), Gaps = 95/346 (27%)
Query: 78 GYCSQMC--TNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKG 135
G CS +C + K Y C+C G L + TCK + + L+++ R
Sbjct: 280 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK--DGATELLLLARR------------ 325
Query: 136 KDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPR 195
+ L RI + + T+ IVL ++I
Sbjct: 326 --------------------------------TDLRRISLDTPDFTD-IVLQLEDIRHAI 352
Query: 196 GMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 255
+ DP G +++WTD E I R +DGS +++ +I P+G+ +D
Sbjct: 353 AIDYDPVEG--YIYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVD--------- 400
Query: 256 DSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY 315
+ R LYW D G + +I ++G+ IL+S L
Sbjct: 401 ---------------------WVARNLYWTDTGTD----RIEVTRLNGTMRKILISEDLE 435
Query: 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTL 375
E A+ L+ + Y ++WTDWGE P+IER +DGS+R +++T + WPNGL L
Sbjct: 436 EPRAIVLDPMVGY---------MYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLAL 486
Query: 376 DIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGD 421
D ++Y+ D+K D I+ N DGTGR+ ++ + F L+GD
Sbjct: 487 DYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD 532
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 27/152 (17%)
Query: 294 LKIGKANMDGSNASILVSGQLYEALALDL--ENGMLYYSTLKCTRWLFWTDWGENPRIER 351
L++ A NA+I+V G L +A A+D +G++Y W+D E I+R
Sbjct: 20 LRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIY-----------WSDVSEEA-IKR 66
Query: 352 IGMDGSNR-STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDL 410
+ + ++ + + P+GL D ++Y+ DS+ + I+ N DG+ R+ + +L
Sbjct: 67 TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 126
Query: 411 MVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+ A+ALD +G +Y++ G
Sbjct: 127 -----------DQPRAIALDPSSGFMYWTDWG 147
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
C + G CS+ C P G C CP G L +D TC
Sbjct: 581 CAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 82/127 (64%), Gaps = 3/127 (2%)
Query: 141 QDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLD 200
+ +V GLD EG+A DW+G ++YW D+ NRIEV +G +R VL ++ PR + LD
Sbjct: 72 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALD 131
Query: 201 PSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 260
P+ G +++WT+WG P+I+R MDGS R+T++ + NGLT+D A RR+Y+ D +
Sbjct: 132 PAEG--FMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTN 188
Query: 261 FIDCKSL 267
I+ ++
Sbjct: 189 LIESSNM 195
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 33/212 (15%)
Query: 219 IERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADSKLD-----FIDCKSLE--IK 270
I RI ++ +N + I T + + L D+ R+Y+ D L F++ +LE ++
Sbjct: 17 IRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE 76
Query: 271 TNVNYST------IFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDL 322
++Y + + LYW D G N +I + +DG + +LV L ALALD
Sbjct: 77 FGLDYPEGMAVDWLGKNLYWADTGTN----RIEVSKLDGQHRQVLVWKDLDSPRALALDP 132
Query: 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382
G +Y WT+WG P+I+R MDGS R+T++ + NGLT+D A RR+
Sbjct: 133 AEGFMY-----------WTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRL 180
Query: 383 YFADSKLDFIDFCNYDGTGRQQVILIDLMVEF 414
Y+ D + I+ N G R +VI DL F
Sbjct: 181 YWTDLDTNLIESSNMLGLNR-EVIADDLPHPF 211
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 126/310 (40%), Gaps = 78/310 (25%)
Query: 72 NECEQP-GYCSQMCTNTK-GSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVA 129
NEC G+CS +C G ++C C Y L DN TC A FL+ S + +I
Sbjct: 266 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA---PTTFLLFSQKSAINRM 322
Query: 130 DLEEKGKDHRAQDIV--VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG------- 180
++E+ ++ DI+ + L V + YD + +YW+DSR N I E+G
Sbjct: 323 VIDEQ----QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVV 378
Query: 181 -------------------------------TNRI-----------VLAKDNITQPRGMM 198
TN I V+ K +PR ++
Sbjct: 379 VSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVV 438
Query: 199 LDPSPGTRWLFWTDWGE-NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 257
++P G ++++T+ E +P+IER +DG+ R + + + P L LD ++++ADS
Sbjct: 439 VNPEKG--YMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADS 496
Query: 258 KLDFIDCKSLEIKTNVNYS----------TIFRK-LYWIDEGGNGVPLKIGKANMDGSNA 306
L I+ L + T+F LYWID+ I K +M G
Sbjct: 497 DLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQ----MIEKIDMTGREG 552
Query: 307 SILVSGQLYE 316
V ++ +
Sbjct: 553 RTKVQARIAQ 562
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/323 (20%), Positives = 124/323 (38%), Gaps = 35/323 (10%)
Query: 131 LEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDN 190
++ D + +V + GL D+ +YW D N IE + G NR V+A D+
Sbjct: 148 IDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA-DD 206
Query: 191 ITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR 250
+ P G+ + +++WTDW IER TII + + + + ++R
Sbjct: 207 LPHPFGL----TQYQDYIYWTDWSRRS-IERANKTSGQNRTIIQGHLDYVMDILVFHSSR 261
Query: 251 RVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGN---GVPLKIGKANMDGSNAS 307
+ + + C L + V ++ N P + +
Sbjct: 262 QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINR 321
Query: 308 ILVSGQLYEALALDLEN----GMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII 363
+++ Q + L + + + Y L + L+W D +N I + DGS T++
Sbjct: 322 MVIDEQQSPDIILPIHSLRNVRAIDYDPLD--KQLYWIDSRQN-MIRKAQEDGSQGFTVV 378
Query: 364 STKI------YWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTND 417
+ + P L++DI +R +Y+ + I+ DG V
Sbjct: 379 VSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVV------------ 426
Query: 418 LMGDNGVP-ALALDLENGMLYYS 439
L G+ P A+ ++ E G +Y++
Sbjct: 427 LKGEQDRPRAVVVNPEKGYMYFT 449
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 82/127 (64%), Gaps = 3/127 (2%)
Query: 141 QDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLD 200
+ +V GLD EG+A DW+G ++YW D+ NRIEV +G +R VL ++ PR + LD
Sbjct: 77 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALD 136
Query: 201 PSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 260
P+ G +++WT+WG P+I+R MDGS R+T++ + NGLT+D A RR+Y+ D +
Sbjct: 137 PAEG--FMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTN 193
Query: 261 FIDCKSL 267
I+ ++
Sbjct: 194 LIESSNM 200
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 33/212 (15%)
Query: 219 IERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADSKLD-----FIDCKSLE--IK 270
I RI ++ +N + I T + + L D+ R+Y+ D L F++ +LE ++
Sbjct: 22 IRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE 81
Query: 271 TNVNYST------IFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDL 322
++Y + + LYW D G N +I + +DG + +LV L ALALD
Sbjct: 82 FGLDYPEGMAVDWLGKNLYWADTGTN----RIEVSKLDGQHRQVLVWKDLDSPRALALDP 137
Query: 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382
G +Y WT+WG P+I+R MDGS R+T++ + NGLT+D A RR+
Sbjct: 138 AEGFMY-----------WTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRL 185
Query: 383 YFADSKLDFIDFCNYDGTGRQQVILIDLMVEF 414
Y+ D + I+ N G R +VI DL F
Sbjct: 186 YWTDLDTNLIESSNMLGLNR-EVIADDLPHPF 216
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 126/310 (40%), Gaps = 78/310 (25%)
Query: 72 NECEQP-GYCSQMCTNTK-GSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVA 129
NEC G+CS +C G ++C C Y L DN TC A FL+ S + +I
Sbjct: 271 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA---PTTFLLFSQKSAINRM 327
Query: 130 DLEEKGKDHRAQDIV--VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG------- 180
++E+ ++ DI+ + L V + YD + +YW+DSR N I E+G
Sbjct: 328 VIDEQ----QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVV 383
Query: 181 -------------------------------TNRI-----------VLAKDNITQPRGMM 198
TN I V+ K +PR ++
Sbjct: 384 VSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIV 443
Query: 199 LDPSPGTRWLFWTDWGE-NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 257
++P G ++++T+ E +P+IER +DG+ R + + + P L LD ++++ADS
Sbjct: 444 VNPEKG--YMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADS 501
Query: 258 KLDFIDCKSLEIKTNVNYS----------TIFRK-LYWIDEGGNGVPLKIGKANMDGSNA 306
L I+ L + T+F LYWID+ I K +M G
Sbjct: 502 DLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQ----MIEKIDMTGREG 557
Query: 307 SILVSGQLYE 316
V ++ +
Sbjct: 558 RTKVQARIAQ 567
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/323 (20%), Positives = 124/323 (38%), Gaps = 35/323 (10%)
Query: 131 LEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDN 190
++ D + +V + GL D+ +YW D N IE + G NR V+A D+
Sbjct: 153 IDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA-DD 211
Query: 191 ITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR 250
+ P G+ + +++WTDW IER TII + + + + ++R
Sbjct: 212 LPHPFGL----TQYQDYIYWTDWSRRS-IERANKTSGQNRTIIQGHLDYVMDILVFHSSR 266
Query: 251 RVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGN---GVPLKIGKANMDGSNAS 307
+ + + C L + V ++ N P + +
Sbjct: 267 QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINR 326
Query: 308 ILVSGQLYEALALDLEN----GMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII 363
+++ Q + L + + + Y L + L+W D +N I + DGS T++
Sbjct: 327 MVIDEQQSPDIILPIHSLRNVRAIDYDPLD--KQLYWIDSRQN-MIRKAQEDGSQGFTVV 383
Query: 364 STKI------YWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTND 417
+ + P L++DI +R +Y+ + I+ DG V
Sbjct: 384 VSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVV------------ 431
Query: 418 LMGDNGVP-ALALDLENGMLYYS 439
L G+ P A+ ++ E G +Y++
Sbjct: 432 LKGEQDRPRAIVVNPEKGYMYFT 454
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 82/127 (64%), Gaps = 3/127 (2%)
Query: 141 QDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLD 200
+ +V GLD EG+A DW+G ++YW D+ NRIEV +G +R VL ++ PR + LD
Sbjct: 70 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALD 129
Query: 201 PSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 260
P+ G +++WT+WG P+I+R MDGS R+T++ + NGLT+D A RR+Y+ D +
Sbjct: 130 PAEG--FMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTN 186
Query: 261 FIDCKSL 267
I+ ++
Sbjct: 187 LIESSNM 193
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 33/212 (15%)
Query: 219 IERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADSKLD-----FIDCKSLE--IK 270
I RI ++ +N + I T + + L D+ R+Y+ D L F++ +LE ++
Sbjct: 15 IRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE 74
Query: 271 TNVNYST------IFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDL 322
++Y + + LYW D G N +I + +DG + +LV L ALALD
Sbjct: 75 FGLDYPEGMAVDWLGKNLYWADTGTN----RIEVSKLDGQHRQVLVWKDLDSPRALALDP 130
Query: 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382
G +Y WT+WG P+I+R MDGS R+T++ + NGLT+D A RR+
Sbjct: 131 AEGFMY-----------WTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRL 178
Query: 383 YFADSKLDFIDFCNYDGTGRQQVILIDLMVEF 414
Y+ D + I+ N G R +VI DL F
Sbjct: 179 YWTDLDTNLIESSNMLGLNR-EVIADDLPHPF 209
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 126/310 (40%), Gaps = 78/310 (25%)
Query: 72 NECEQP-GYCSQMCTNTK-GSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVA 129
NEC G+CS +C G ++C C Y L DN TC A FL+ S + +I
Sbjct: 264 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA---PTTFLLFSQKSAINRM 320
Query: 130 DLEEKGKDHRAQDIV--VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG------- 180
++E+ ++ DI+ + L V + YD + +YW+DSR N I E+G
Sbjct: 321 VIDEQ----QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVV 376
Query: 181 -------------------------------TNRI-----------VLAKDNITQPRGMM 198
TN I V+ K +PR ++
Sbjct: 377 VSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIV 436
Query: 199 LDPSPGTRWLFWTDWGE-NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 257
++P G ++++T+ E +P+IER +DG+ R + + + P L LD ++++ADS
Sbjct: 437 VNPEKG--YMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADS 494
Query: 258 KLDFIDCKSLEIKTNVNYS----------TIFRK-LYWIDEGGNGVPLKIGKANMDGSNA 306
L I+ L + T+F LYWID+ I K +M G
Sbjct: 495 DLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQ----MIEKIDMTGREG 550
Query: 307 SILVSGQLYE 316
V ++ +
Sbjct: 551 RTKVQARIAQ 560
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/323 (20%), Positives = 124/323 (38%), Gaps = 35/323 (10%)
Query: 131 LEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDN 190
++ D + +V + GL D+ +YW D N IE + G NR V+A D+
Sbjct: 146 IDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA-DD 204
Query: 191 ITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR 250
+ P G+ + +++WTDW IER TII + + + + ++R
Sbjct: 205 LPHPFGL----TQYQDYIYWTDWSRRS-IERANKTSGQNRTIIQGHLDYVMDILVFHSSR 259
Query: 251 RVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGN---GVPLKIGKANMDGSNAS 307
+ + + C L + V ++ N P + +
Sbjct: 260 QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINR 319
Query: 308 ILVSGQLYEALALDLEN----GMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII 363
+++ Q + L + + + Y L + L+W D +N I + DGS T++
Sbjct: 320 MVIDEQQSPDIILPIHSLRNVRAIDYDPLD--KQLYWIDSRQN-MIRKAQEDGSQGFTVV 376
Query: 364 STKI------YWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTND 417
+ + P L++DI +R +Y+ + I+ DG V
Sbjct: 377 VSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVV------------ 424
Query: 418 LMGDNGVP-ALALDLENGMLYYS 439
L G+ P A+ ++ E G +Y++
Sbjct: 425 LKGEQDRPRAIVVNPEKGYMYFT 447
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 79/122 (64%), Gaps = 3/122 (2%)
Query: 142 DIVVS-GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLD 200
D V+S + +GLA DWI +IYW DS L + V D G R L ++N ++PR +++D
Sbjct: 69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD 128
Query: 201 PSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 260
P G +++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y+ DSKL
Sbjct: 129 PVHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186
Query: 261 FI 262
I
Sbjct: 187 SI 188
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 48/214 (22%)
Query: 197 MMLDPSPGTRWLFWTDWGE----NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 252
+ LD + ++W+D + + +++R S+ T+IS I P+GL +D +
Sbjct: 33 VALDTEVASNRIYWSDLSQRMICSTQLDR-AHGVSSYDTVISRDIQAPDGLAVDWIHSNI 91
Query: 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312
Y+ DS L + S+ V T+FR+ +G
Sbjct: 92 YWTDSVLGTV---SVADTKGVKRKTLFRE-----------------------------NG 119
Query: 313 QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNG 372
A+ +D +G +Y WTDWG +I++ G++G + ++++ I WPNG
Sbjct: 120 SKPRAIVVDPVHGFMY-----------WTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 168
Query: 373 LTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVI 406
+TLD+ + R+Y+ DSKL I + +G R+ ++
Sbjct: 169 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 202
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD--NITQPRGMMLD 200
+V + G+ D + G +YW+DS+L+ I D NG NR + +D + P + +
Sbjct: 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 217
Query: 201 PSPGTRWLFWTD 212
+FWTD
Sbjct: 218 EDK----VFWTD 225
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPS 202
I+ L EG+A D +G I+W DS+L+RIEV +GT R VL + PRG++ DP
Sbjct: 73 IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV 132
Query: 203 PGTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261
G L+WTDW +NP+IE MDG+NR + + PNGLT D + ++ + D+
Sbjct: 133 RGN--LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190
Query: 262 IDC 264
+C
Sbjct: 191 AEC 193
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 49/202 (24%)
Query: 208 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSL 267
++WTD E P I R + G +TII + P G+ LD R +++ DS+LD I+
Sbjct: 50 VYWTDISE-PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEV--- 105
Query: 268 EIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDLENG 325
A MDG+ +L L + D G
Sbjct: 106 -------------------------------AKMDGTQRRVLFDTGLVNPRGIVTDPVRG 134
Query: 326 MLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384
LY WTDW +NP+IE MDG+NR + + PNGLT D + ++ +
Sbjct: 135 NLY-----------WTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW 183
Query: 385 ADSKLDFIDFCNYDGTGRQQVI 406
D+ + N GR++V+
Sbjct: 184 VDAGTHRAECLNPAQPGRRKVL 205
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 23/148 (15%)
Query: 292 VPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIER 351
+PL+ + A + + ++ LA D + ++Y WTD E P I R
Sbjct: 15 LPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVY-----------WTDISE-PSIGR 62
Query: 352 IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLM 411
+ G +TII + P G+ LD R +++ DS+LD I+ DGT R+
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-------- 114
Query: 412 VEFTNDLMGDNGVPALALDLENGMLYYS 439
V F L+ G+ D G LY++
Sbjct: 115 VLFDTGLVNPRGI---VTDPVRGNLYWT 139
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC G CS+ C+ +G C CP G L C+D++EC+ P CSQ+C N +G Y
Sbjct: 4 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGGY 62
Query: 92 ICSCNEGYVLEYDNHTCKAI 111
C C EG+ L+ CKA+
Sbjct: 63 KCQCEEGFQLDPHTKACKAV 82
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC G CS+ C+ +G C CP G L C+D++EC+ P CSQ+C N +G Y
Sbjct: 31 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGGY 89
Query: 92 ICSCNEGYVLEYDNHTCK 109
C C EG+ L+ CK
Sbjct: 90 KCQCEEGFQLDPHTKACK 107
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC G CS+ C+ +G C CP G L C+D++EC+ P CSQ+C N +G Y
Sbjct: 7 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGGY 65
Query: 92 ICSCNEGYVLEYDNHTCK 109
C C EG+ L+ CK
Sbjct: 66 KCQCEEGFQLDPHTKACK 83
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC G CS C+ +G C CP G L C+D++EC+ P CSQ+C N +G Y
Sbjct: 31 ECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGGY 89
Query: 92 ICSCNEGYVLEYDNHTCK 109
C C EG+ L+ CK
Sbjct: 90 KCQCEEGFQLDPHTKACK 107
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC G CS+ C+ +G C CP G L C+D++EC+ P CSQ+C N +G Y
Sbjct: 4 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGGY 62
Query: 92 ICSCNEGYVLEYDNHTCK 109
C C EG+ L+ CK
Sbjct: 63 KCQCEEGFQLDPHTKACK 80
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC G CS C+ +G C CP G L C+D++EC+ P CSQ+C N +G Y
Sbjct: 7 ECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGGY 65
Query: 92 ICSCNEGYVLEYDNHTCK 109
C C EG+ L+ CK
Sbjct: 66 KCQCEEGFQLDPHTKACK 83
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 40 CSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSC 95
C C P A C CP G IL +D C D++ECE G+CS +C N G++ C C
Sbjct: 51 CPADCDPNT-QASCECPEGYIL-DDGFICTDIDECENGGFCSGVCHNLPGTFECIC 104
Score = 31.6 bits (70), Expect = 0.88, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 12 CDGKT----DCPNG--ADEGPGC-DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
CD T +CP G D+G C D+ EC++ G CS CH P C C P L+
Sbjct: 55 CDPNTQASCECPEGYILDDGFICTDIDECENG-GFCSGVCHNLPGTFECICGPDSALA 111
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 29 DLAECKHKFGLC-SNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNT 87
D+ EC K +C + C P C CP G + S +C+D++EC + C+Q+C N
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE-NMCAQLCVNY 60
Query: 88 KGSYICSCN--EGYVLEYDNHTCKAIN 112
G Y C C+ +G+ L D +C+ ++
Sbjct: 61 PGGYTCYCDGKKGFKLAQDQKSCEVVS 87
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 69 QDMNECE-QPGYC-SQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115
+D++EC +P C + +C N G + C C EGY + +C+ I+ +
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECS 49
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 31 AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC--EQPGYCSQMCTNTK 88
+ C + L + +C + G CTC PG SN + NEC E+ C C +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELA---KNECHPERTDGCQHFCLPGQ 62
Query: 89 GSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADL 131
SY CSC +GY L D+ C + A ++ S + + + DL
Sbjct: 63 ESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 70 DMNEC--------EQPG-YCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110
D++EC E P C +C N G Y CSC GY L+ D H+C+A
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 40 CSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69
C + CH G C+C PG L D +CQ
Sbjct: 22 CQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 15/159 (9%)
Query: 118 LIISNRHSILVAD-----LEEKGKDHRAQDIV-VSGLDLVEGLAYDWIGGHIYWLDSRLN 171
L + + ++ VAD + + + Q ++ +GL+ +G+A D G++Y D+ N
Sbjct: 113 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNN 171
Query: 172 RIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRST 231
R+ + N++VL +IT P G+ +D + GT ++ T+ N ++ + GS ST
Sbjct: 172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GT--VYVTEHNTNQVVKLLA--GSTTST 226
Query: 232 IIS-TKIYWPNGLTLDIATRRVYFADSKLD-FIDCKSLE 268
++ T + P + +D + R VY AD D + SLE
Sbjct: 227 VLPFTGLNTPLAVAVD-SDRTVYVADRGNDRVVKLTSLE 264
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 146 SGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGT 205
+GL +GLA D G +Y D NR+ N+ VL D + P G+ +D
Sbjct: 64 NGLYQPQGLAVDG-AGTVYVTDFN-NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQ--- 118
Query: 206 RWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 257
++ D G N R+ ++ ++ + T + P+G+ +D + VY D+
Sbjct: 119 GAVYVADRGNN-RVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDT 168
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 51 ALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVL 101
A C CP G IL +D C D++ECE G+CS +C N G++ C C L
Sbjct: 61 ASCECPEGYIL-DDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSAL 110
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 70 DMNECEQPG----YCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110
D++EC++ C C N G Y CSC GY+L DN TC+
Sbjct: 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRV 164
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 80 CSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAF-----LIISNRHSILVADLEEK 134
C C G Y CSC GY+L + HTC A+ F + S + L
Sbjct: 133 CDHYCHXYLGGYYCSCRVGYILHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSC 192
Query: 135 GKDHRAQDIVVSGLDLVEGL 154
+ R ++ LD VE
Sbjct: 193 AYNIRLEEGFSITLDFVESF 212
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 70 DMNECEQPG----YCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110
D++EC++ C C N G Y CSC GY+L DN TC+
Sbjct: 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRV 164
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 69 QDMNECE-QPG---YCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
+D++EC+ PG C C N G + CSC GYVL + TC
Sbjct: 122 EDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 165
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 68 CQDMNECEQ-PGYCSQ-MCTNTKGSYICSCNEGYVLEYDNHTC 108
C+D++ECE PG C +C NT+GS+ C C G L+ C
Sbjct: 104 CEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 70 DMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC-KAINHSAAFLIISNRHSI 126
D++ECE + +C N+ GS+IC C+ L+ C + I + +I R I
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 55 CPPGEILSNDSVTC--QDMNECEQ-PGYCSQ-MCTNTKGSYICSCNEGYVLEYDNHTC 108
CP GE + +T +D++EC++ PG C C NT GS+ C C GY L D C
Sbjct: 104 CPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 70 DMNECEQPGYC-SQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNR 123
D+NEC P C S C NT GSYIC C + L C +L I R
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPR 56
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 55 CPPGEILSNDSVTC--QDMNECEQ-PGYCSQ-MCTNTKGSYICSCNEGYVLEYDNHTC 108
CP GE + +T +D++EC++ PG C C NT GS+ C C GY L D C
Sbjct: 104 CPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 70 DMNECEQPGYC-SQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNR 123
D+NEC P C S C NT GSYIC C + L C +L I R
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPR 56
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 72 NEC--EQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVA 129
NEC E+ C C + SY CSC +GY L D+ C + A ++ S + + +
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQ 62
Query: 130 DL 131
DL
Sbjct: 63 DL 64
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 70 DMNECEQPGYCSQ-MCTNTKGSYICSCNEGYVL 101
DM+EC++P C C NT GSY C C GY+L
Sbjct: 4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYIL 36
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 29 DLAECKH----KFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQ-M 83
D+ ECK K G C NT C CP G IL+ + C D +EC C
Sbjct: 4 DMDECKEPDVCKHGQCINT----DGSYRCECPFGYILAGNE--CVDTDECSVGNPCGNGT 57
Query: 84 CTNTKGSYICSCNEGY 99
C N G + C+C EG+
Sbjct: 58 CKNVIGGFECTCEEGF 73
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 4 RCVNLTKVCDGKTDCPNGADEG-PGCDLAECKHKFGLCSNTCHPTPLGALCTCPPG 58
C+ L KVC+ DC + +DE C EC G CS+ C+ +G C CP G
Sbjct: 18 ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDG 73
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 24 EGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPG------EILSNDSVTCQDMNE-CEQ 76
+G C + C++ +C +C C P E +D + C + N CEQ
Sbjct: 46 DGDQCASSPCQN-----GGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQ 100
Query: 77 PGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
YCS T TK S C C+EGY L D +C
Sbjct: 101 --YCSDH-TGTKRS--CRCHEGYSLLADGVSC 127
>pdb|3KCG|L Chain L, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 59
Score = 32.3 bits (72), Expect = 0.51, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 66 VTCQDMNECEQPGYCSQMCTNT-KGSYICSCNEGYVLEYDNHTCK 109
VTC N G C Q C N+ +CSC EGY L + +C+
Sbjct: 3 VTCNIKN-----GRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 42
>pdb|2PJG|A Chain A, Solution Structure Of Rhodostomin D51e Mutant
Length = 68
Score = 32.0 bits (71), Expect = 0.81, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 17 DCPNGADEGPGCDLAECKHK------FGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70
+C + E P CD A CK + GLC C + G +C P GE + +D T Q
Sbjct: 3 ECDCSSPENPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIPRGE-MPDDRCTGQS 61
Query: 71 MN 72
+
Sbjct: 62 AD 63
>pdb|2WPH|E Chain E, Factor Ixa Superactive Triple Mutant
pdb|2WPI|E Chain E, Factor Ixa Superactive Double Mutant
pdb|2WPJ|E Chain E, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|E Chain E, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|E Chain E, Factor Ixa Superactive Triple Mutant, Edta-Soaked
pdb|2WPM|E Chain E, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 59
Score = 31.6 bits (70), Expect = 0.93, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 78 GYCSQMCTNT-KGSYICSCNEGYVLEYDNHTCK 109
G C Q C N+ +CSC EGY L + +C+
Sbjct: 7 GRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 39
>pdb|1RFN|B Chain B, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|B Chain B, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|D Chain D, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|B Chain B, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 57
Score = 31.6 bits (70), Expect = 0.93, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 78 GYCSQMCTNT-KGSYICSCNEGYVLEYDNHTCK 109
G C Q C N+ +CSC EGY L + +C+
Sbjct: 8 GRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 40
>pdb|1KIG|L Chain L, Bovine Factor Xa
Length = 51
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 78 GYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
G C Q C + CSC GYVL D+ +C
Sbjct: 6 GGCDQFCREERSEVRCSCAHGYVLGDDSKSC 36
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 50 GALCTCPPG-----EILSNDSVTCQDMNECE--QPGYCSQM--CTNTKGSYICSCNEGY 99
C C PG EI++ TC D+NEC C + C NT+GSY C C+ GY
Sbjct: 18 ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY 76
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 53 CTCPPG-------EILSNDSV-TCQDMNECEQPGY---CSQMCTNTKGSYICSCNEGY 99
C C PG + N+S TCQD++EC + S +C NT GSY C C G+
Sbjct: 70 CVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 70 DMNEC----EQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
D+NEC + P CS C N G Y CSC Y L D C
Sbjct: 116 DINECTDFVDVP--CSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
>pdb|1N4Y|A Chain A, Refined Structure Of Kistrin
pdb|2PJF|A Chain A, Solution Structure Of Rhodostomin
Length = 68
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 17 DCPNGADEGPGCDLAECKHK------FGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70
+C + E P CD A CK + GLC C + G +C P G+ + +D T Q
Sbjct: 3 ECDCSSPENPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIPRGD-MPDDRCTGQS 61
Query: 71 MN 72
+
Sbjct: 62 AD 63
>pdb|2DC5|A Chain A, Crystal Structure Of Mouse Glutathione S-Transferase, Mu7
(Gstm7) At 1.6 A Resolution
pdb|2DC5|B Chain B, Crystal Structure Of Mouse Glutathione S-Transferase, Mu7
(Gstm7) At 1.6 A Resolution
Length = 231
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 380 RRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTN 416
+R +FA K+ F+DF YD R QV + F N
Sbjct: 151 KRPWFAGDKITFVDFIAYDVLERNQVFEAKCLDAFPN 187
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 78 GYCSQMC-TNTKGSYICSCNEGYVLEYDNHTCK-AINHSAAFLIISNRHSILV 128
G C Q C T +CSC GY L D +CK A+ + +S+ + L
Sbjct: 93 GRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPTTLT 145
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 78 GYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
G C Q C + S +CSC GY L + C
Sbjct: 49 GDCDQFCHEEQNSVVCSCARGYTLADNGKAC 79
>pdb|1MHP|H Chain H, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
pdb|1MHP|X Chain X, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
Length = 219
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 153 GLAYDWI-----GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNI 191
G +W+ GGH Y+LDS R + +N N + L +++
Sbjct: 42 GKGLEWVATISGGGHTYYLDSVKGRFTISRDNSKNTLYLQMNSL 85
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 29 DLAECKHKFGLCSN-TCHPTPLGALCTCPPG-----EILSNDSVTCQDMNECEQ-PGYC- 80
D+ EC+ LC C TP C C G ++ N C D++EC++ P C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKN----CMDIDECQRDPLLCR 57
Query: 81 SQMCTNTKGSYICSCNEGYVLEYDNHTC 108
+C NT+GSY C C G+ L + C
Sbjct: 58 GGVCHNTEGSYRCECPPGHQLSPNISAC 85
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 78 GYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
G C Q C + S +CSC GY L + C
Sbjct: 89 GDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
>pdb|3EOT|H Chain H, Crystal Structure Of Lac031, An Engineered Anti-Vla1 Fab
Length = 226
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 153 GLAYDWI-----GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNI 191
G +W+ GGH Y+LDS R + +N N + L +++
Sbjct: 42 GKGLEWVATISGGGHTYYLDSVKGRFTISRDNSKNTLYLQMNSL 85
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 78 GYCSQMC-TNTKGSYICSCNEGYVLEYDNHTCK-AINHSAAFLIISNRHSILV 128
G C Q C T +CSC GY L D +CK A+ + +S+ + L
Sbjct: 93 GRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPTTLT 145
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPG-CDLAECK 34
C++ VCDG DC N DE P CD + K
Sbjct: 67 CISDLLVCDGHKDCHNAHDEDPDVCDTSVVK 97
>pdb|2B2X|H Chain H, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant Of
The Aqc2 Fab
pdb|2B2X|I Chain I, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant Of
The Aqc2 Fab
Length = 226
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 153 GLAYDWI-----GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNI 191
G +W+ GGH Y+LDS R + +N N + L +++
Sbjct: 42 GKGLEWVAVISGGGHTYYLDSVEGRFTISRDNSKNTLYLQMNSL 85
>pdb|2Z2N|A Chain A, Crystal Structure Of Selenomethionine Substituted
Virginiamycin B Lyase From Staphylococcus Aureus
Length = 299
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 34/237 (14%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220
G +++ ++ N+I + G + + + P G+ P+ G W T+ N RI
Sbjct: 68 GEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWF--TEXNGN-RIG 123
Query: 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI-------DCKSLEIKTNV 273
RI DG R + K +P+ +TL + ++F +++ + I D +I T
Sbjct: 124 RITDDGKIREYELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPA 182
Query: 274 NYSTIFRK-----LYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLY 328
+ K L++++ GN KIG+ I SG++ E + N +
Sbjct: 183 SGPVGITKGNDDALWFVEIIGN----KIGR---------ITTSGEITE-FKIPTPNARPH 228
Query: 329 YSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 385
T L++T+WG N +I R+ + I K P+G+ D T ++FA
Sbjct: 229 AITAGAGIDLWFTEWGAN-KIGRLTSNNIIEEYPIQIKSAEPHGICFDGET--IWFA 282
>pdb|2GD4|L Chain L, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|A Chain A, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 58
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 78 GYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
G C Q C + S +CSC GY L + C
Sbjct: 10 GDCDQFCHEEQNSVVCSCARGYTLADNGKAC 40
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
+C++ VCDG DC NG DE
Sbjct: 68 QCISKLFVCDGHNDCRNGEDE 88
>pdb|3KL6|B Chain B, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
Length = 57
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 78 GYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
G C Q C + S +CSC GY L + C
Sbjct: 12 GDCDQFCHEEQNSVVCSCARGYTLADNGKAC 42
>pdb|2BOK|L Chain L, Factor Xa- Cation
pdb|2JKH|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|L Chain L, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBW|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 55
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 78 GYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
G C Q C + S +CSC GY L + C
Sbjct: 9 GDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,345,295
Number of Sequences: 62578
Number of extensions: 681066
Number of successful extensions: 1788
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1340
Number of HSP's gapped (non-prelim): 269
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)