Query psy17325
Match_columns 461
No_of_seqs 376 out of 3080
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 19:14:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 100.0 4.9E-44 1.1E-48 354.4 27.7 223 160-446 990-1220(1289)
2 KOG1214|consensus 100.0 7.8E-37 1.7E-41 303.5 26.1 234 115-398 990-1226(1289)
3 KOG1215|consensus 100.0 7.8E-30 1.7E-34 279.5 29.4 333 2-446 269-633 (877)
4 PLN02919 haloacid dehalogenase 99.9 6.1E-21 1.3E-25 210.1 32.8 265 143-448 562-884 (1057)
5 PF08450 SGL: SMP-30/Gluconola 99.9 5.9E-19 1.3E-23 165.6 29.3 228 151-441 2-245 (246)
6 KOG1215|consensus 99.8 1.8E-19 4E-24 197.9 24.6 253 31-333 365-629 (877)
7 PLN02919 haloacid dehalogenase 99.8 5.3E-17 1.1E-21 179.1 28.2 222 148-398 623-888 (1057)
8 PF08450 SGL: SMP-30/Gluconola 99.7 1.2E-15 2.7E-20 143.0 23.9 194 194-447 2-208 (246)
9 COG3386 Gluconolactonase [Carb 99.6 2.1E-12 4.7E-17 123.2 26.4 239 143-444 19-278 (307)
10 PF10282 Lactonase: Lactonase, 99.6 8.9E-12 1.9E-16 122.7 31.8 244 147-447 35-317 (345)
11 PRK11028 6-phosphogluconolacto 99.5 1.8E-11 4E-16 119.9 30.1 243 149-448 35-300 (330)
12 PF10282 Lactonase: Lactonase, 99.5 1.2E-10 2.5E-15 114.8 33.0 208 147-403 85-327 (345)
13 PRK11028 6-phosphogluconolacto 99.4 1.2E-10 2.6E-15 114.2 28.8 237 161-448 2-254 (330)
14 KOG4659|consensus 99.4 2.3E-11 5.1E-16 128.0 19.8 221 118-397 378-690 (1899)
15 KOG4659|consensus 99.4 5.1E-11 1.1E-15 125.5 21.7 242 148-448 364-687 (1899)
16 COG3391 Uncharacterized conser 99.4 3.6E-10 7.8E-15 112.6 27.0 238 150-446 32-277 (381)
17 TIGR02604 Piru_Ver_Nterm putat 99.4 4.4E-10 9.6E-15 111.5 26.0 272 147-448 12-346 (367)
18 COG3391 Uncharacterized conser 99.3 1.2E-09 2.6E-14 108.9 25.8 200 147-397 72-282 (381)
19 KOG1520|consensus 99.3 1.4E-10 3E-15 110.3 14.7 140 236-414 113-266 (376)
20 COG2706 3-carboxymuconate cycl 99.2 2.6E-08 5.5E-13 93.4 28.8 245 147-447 38-316 (346)
21 PF06977 SdiA-regulated: SdiA- 99.2 9.3E-09 2E-13 95.1 24.6 195 150-395 23-247 (248)
22 PF07995 GSDH: Glucose / Sorbo 99.2 1.8E-08 3.8E-13 98.5 25.0 263 148-446 1-329 (331)
23 COG3386 Gluconolactonase [Carb 99.1 9.7E-09 2.1E-13 98.2 20.2 160 190-398 23-193 (307)
24 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 6.5E-07 1.4E-11 85.7 32.9 236 149-447 31-274 (300)
25 KOG1520|consensus 99.1 1.5E-08 3.2E-13 96.6 20.6 198 150-385 66-281 (376)
26 PF00058 Ldl_recept_b: Low-den 99.1 2.2E-10 4.9E-15 75.0 5.7 41 337-377 2-42 (42)
27 PF06977 SdiA-regulated: SdiA- 99.1 7.3E-08 1.6E-12 89.1 24.0 202 189-447 19-246 (248)
28 TIGR02658 TTQ_MADH_Hv methylam 99.1 4.7E-07 1E-11 87.9 29.6 251 159-446 11-324 (352)
29 TIGR03606 non_repeat_PQQ dehyd 99.0 6.3E-07 1.4E-11 89.7 28.4 183 142-333 23-249 (454)
30 PF00058 Ldl_recept_b: Low-den 99.0 1.5E-09 3.3E-14 71.1 6.0 41 207-247 2-42 (42)
31 TIGR02604 Piru_Ver_Nterm putat 99.0 4.9E-08 1.1E-12 97.0 19.5 164 190-397 12-212 (367)
32 TIGR03866 PQQ_ABC_repeats PQQ- 98.9 3.5E-06 7.6E-11 80.6 30.2 185 161-397 1-186 (300)
33 COG4257 Vgb Streptogramin lyas 98.9 9.8E-07 2.1E-11 80.1 22.1 240 150-447 63-342 (353)
34 COG2706 3-carboxymuconate cycl 98.9 2.7E-06 5.7E-11 80.1 25.4 237 162-446 4-268 (346)
35 PF07995 GSDH: Glucose / Sorbo 98.8 4.3E-07 9.3E-12 88.8 19.8 221 146-394 46-331 (331)
36 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.3E-05 2.8E-10 78.0 28.1 247 144-405 43-336 (352)
37 PRK04043 tolB translocation pr 98.7 1.1E-05 2.4E-10 81.4 27.1 240 157-458 152-407 (419)
38 KOG4499|consensus 98.7 4.8E-06 1E-10 73.9 20.4 211 152-409 18-251 (310)
39 PRK04792 tolB translocation pr 98.6 3.3E-05 7.1E-10 78.9 26.6 224 160-443 183-414 (448)
40 PF03088 Str_synth: Strictosid 98.6 1.9E-07 4.1E-12 71.6 7.0 81 316-397 1-86 (89)
41 PF14670 FXa_inhibition: Coagu 98.5 5E-08 1.1E-12 60.8 2.6 33 76-108 4-36 (36)
42 PRK00178 tolB translocation pr 98.5 6.2E-05 1.3E-09 76.6 26.6 227 158-444 161-396 (430)
43 PF14670 FXa_inhibition: Coagu 98.5 4.9E-08 1.1E-12 60.9 2.2 36 33-68 1-36 (36)
44 PF03022 MRJP: Major royal jel 98.5 2.1E-05 4.5E-10 75.1 21.1 212 150-446 2-259 (287)
45 TIGR03606 non_repeat_PQQ dehyd 98.5 1.6E-05 3.4E-10 79.8 20.2 183 184-397 22-261 (454)
46 COG3204 Uncharacterized protei 98.5 2.7E-05 5.8E-10 71.8 19.6 196 150-387 87-302 (316)
47 PRK03629 tolB translocation pr 98.4 0.00018 3.9E-09 73.2 26.8 225 159-443 163-395 (429)
48 TIGR02800 propeller_TolB tol-p 98.4 0.00017 3.6E-09 73.1 26.4 225 160-444 156-387 (417)
49 COG3204 Uncharacterized protei 98.4 5.9E-05 1.3E-09 69.6 20.2 213 192-448 86-309 (316)
50 PRK05137 tolB translocation pr 98.4 0.00028 6.1E-09 71.9 27.7 188 171-407 182-373 (435)
51 PRK04922 tolB translocation pr 98.4 0.00013 2.7E-09 74.4 25.0 192 160-398 168-368 (433)
52 PRK02889 tolB translocation pr 98.4 0.00023 4.9E-09 72.4 26.0 193 159-398 163-360 (427)
53 smart00135 LY Low-density lipo 98.4 1.3E-06 2.8E-11 57.6 6.0 38 362-399 3-40 (43)
54 PF02239 Cytochrom_D1: Cytochr 98.3 0.00038 8.2E-09 69.0 25.3 252 144-444 32-338 (369)
55 TIGR03118 PEPCTERM_chp_1 conse 98.3 0.00054 1.2E-08 63.9 23.4 230 143-407 17-287 (336)
56 PF12662 cEGF: Complement Clr- 98.2 6.7E-07 1.4E-11 49.9 2.0 24 50-73 1-24 (24)
57 PF02239 Cytochrom_D1: Cytochr 98.2 0.0014 3.1E-08 65.0 26.6 186 161-397 6-201 (369)
58 smart00135 LY Low-density lipo 98.2 4.5E-06 9.8E-11 54.9 5.8 40 143-182 3-42 (43)
59 PF03022 MRJP: Major royal jel 98.2 6.5E-05 1.4E-09 71.7 16.1 182 149-391 61-258 (287)
60 COG2133 Glucose/sorbosone dehy 98.2 0.00026 5.7E-09 69.5 20.1 222 144-397 126-396 (399)
61 PRK04792 tolB translocation pr 98.2 0.00097 2.1E-08 68.2 25.0 205 153-407 222-432 (448)
62 KOG1219|consensus 98.1 3E-06 6.5E-11 94.6 5.8 71 25-100 3896-3972(4289)
63 PRK01742 tolB translocation pr 98.1 0.0015 3.2E-08 66.5 25.0 191 160-403 169-365 (429)
64 PRK05137 tolB translocation pr 98.1 0.0025 5.4E-08 65.0 26.6 206 151-406 204-418 (435)
65 PRK04922 tolB translocation pr 98.1 0.0019 4E-08 65.9 25.4 206 152-407 207-418 (433)
66 PF03088 Str_synth: Strictosid 98.1 1.5E-05 3.3E-10 61.1 7.4 84 241-357 1-89 (89)
67 PRK04043 tolB translocation pr 98.1 0.004 8.7E-08 62.9 26.7 208 154-407 193-407 (419)
68 PF07645 EGF_CA: Calcium-bindi 98.0 3.3E-06 7.1E-11 55.3 2.4 39 70-108 1-42 (42)
69 PRK03629 tolB translocation pr 98.0 0.0061 1.3E-07 62.0 26.9 207 151-407 201-413 (429)
70 PF07645 EGF_CA: Calcium-bindi 98.0 3.8E-06 8.3E-11 55.0 2.3 40 29-68 1-42 (42)
71 PRK01029 tolB translocation pr 98.0 0.0058 1.3E-07 62.0 26.3 194 160-398 147-359 (428)
72 COG4257 Vgb Streptogramin lyas 97.9 0.0035 7.6E-08 57.5 21.0 223 149-397 104-346 (353)
73 PRK02889 tolB translocation pr 97.9 0.004 8.8E-08 63.3 24.4 205 153-407 200-410 (427)
74 cd00112 LDLa Low Density Lipop 97.9 3.7E-06 8.1E-11 52.5 1.4 24 2-25 10-33 (35)
75 PRK00178 tolB translocation pr 97.9 0.0082 1.8E-07 61.1 26.6 205 152-406 202-412 (430)
76 PF00057 Ldl_recept_a: Low-den 97.9 3.3E-06 7.1E-11 53.3 1.0 26 2-28 12-37 (37)
77 PF12662 cEGF: Complement Clr- 97.9 3.8E-06 8.2E-11 46.9 1.1 24 90-113 1-24 (24)
78 TIGR03118 PEPCTERM_chp_1 conse 97.9 0.0044 9.5E-08 57.9 20.9 208 187-447 18-274 (336)
79 TIGR02800 propeller_TolB tol-p 97.8 0.014 3E-07 59.0 25.5 203 153-405 194-402 (417)
80 KOG4499|consensus 97.7 0.0026 5.7E-08 56.9 16.4 89 353-446 144-235 (310)
81 PRK01029 tolB translocation pr 97.7 0.036 7.8E-07 56.3 27.0 205 155-407 191-410 (428)
82 smart00192 LDLa Low-density li 97.7 1.9E-05 4.2E-10 48.6 1.5 23 2-24 11-33 (33)
83 PF01436 NHL: NHL repeat; Int 97.6 0.00017 3.7E-09 42.5 4.5 28 367-395 1-28 (28)
84 PRK02888 nitrous-oxide reducta 97.5 0.0094 2E-07 61.7 19.3 172 159-397 140-350 (635)
85 cd00200 WD40 WD40 domain, foun 97.5 0.091 2E-06 48.5 30.7 191 153-397 56-248 (289)
86 PRK01742 tolB translocation pr 97.5 0.07 1.5E-06 54.3 24.8 201 151-407 206-411 (429)
87 KOG1219|consensus 97.4 0.00015 3.3E-09 81.8 5.1 76 26-110 3858-3939(4289)
88 cd00200 WD40 WD40 domain, foun 97.4 0.11 2.5E-06 47.8 28.4 193 151-397 12-206 (289)
89 COG2133 Glucose/sorbosone dehy 97.3 0.038 8.3E-07 54.5 20.2 274 144-449 62-395 (399)
90 TIGR03032 conserved hypothetic 97.2 0.12 2.6E-06 48.9 20.7 68 358-442 194-261 (335)
91 PF01436 NHL: NHL repeat; Int 97.1 0.0013 2.8E-08 38.7 4.8 27 148-175 1-27 (28)
92 KOG4260|consensus 97.1 0.00048 1E-08 62.3 3.6 49 51-101 217-269 (350)
93 KOG4289|consensus 97.0 0.00099 2.1E-08 72.7 5.9 76 17-98 1225-1308(2531)
94 KOG4260|consensus 97.0 0.00032 7E-09 63.4 1.8 76 17-101 221-305 (350)
95 PF05096 Glu_cyclase_2: Glutam 96.8 0.41 8.9E-06 44.6 26.2 196 150-397 46-260 (264)
96 cd01475 vWA_Matrilin VWA_Matri 96.8 0.00062 1.3E-08 62.7 2.3 43 64-106 180-223 (224)
97 PF02333 Phytase: Phytase; In 96.8 0.29 6.4E-06 48.1 20.6 127 189-352 153-299 (381)
98 COG0823 TolB Periplasmic compo 96.5 0.39 8.4E-06 48.6 20.1 199 152-397 150-357 (425)
99 PF05096 Glu_cyclase_2: Glutam 96.5 0.54 1.2E-05 43.8 19.1 142 149-333 90-251 (264)
100 KOG0285|consensus 96.5 0.72 1.6E-05 44.2 19.8 111 143-259 146-256 (460)
101 smart00179 EGF_CA Calcium-bind 96.4 0.0044 9.6E-08 39.4 3.3 35 30-68 2-38 (39)
102 PF02333 Phytase: Phytase; In 96.3 1 2.2E-05 44.4 20.8 115 315-447 158-285 (381)
103 cd01475 vWA_Matrilin VWA_Matri 96.3 0.0035 7.6E-08 57.7 3.4 41 26-66 182-223 (224)
104 PF01731 Arylesterase: Arylest 96.2 0.012 2.7E-07 44.8 5.6 42 355-397 42-83 (86)
105 PRK02888 nitrous-oxide reducta 96.2 0.38 8.1E-06 50.2 17.5 70 315-397 323-403 (635)
106 TIGR03032 conserved hypothetic 96.1 1 2.2E-05 42.9 18.6 150 141-333 95-261 (335)
107 smart00179 EGF_CA Calcium-bind 96.1 0.004 8.7E-08 39.6 2.1 35 71-108 2-38 (39)
108 PF06433 Me-amine-dh_H: Methyl 96.1 1.5 3.2E-05 42.4 24.5 265 161-446 3-324 (342)
109 KOG4289|consensus 96.0 0.0054 1.2E-07 67.3 3.4 48 48-100 1219-1269(2531)
110 PF12947 EGF_3: EGF domain; I 95.8 0.0049 1.1E-07 38.5 1.5 34 33-68 1-36 (36)
111 COG4946 Uncharacterized protei 95.6 2.8 6.1E-05 41.8 20.7 124 216-385 381-506 (668)
112 COG4946 Uncharacterized protei 95.5 1.7 3.8E-05 43.2 18.2 131 165-331 376-507 (668)
113 PF13449 Phytase-like: Esteras 95.5 1.3 2.8E-05 43.2 17.7 172 192-398 20-251 (326)
114 KOG4649|consensus 95.4 2.3 4.9E-05 39.3 22.3 124 151-333 33-156 (354)
115 COG3823 Glutamine cyclotransfe 95.0 2.5 5.3E-05 37.8 18.1 32 366-397 227-258 (262)
116 smart00181 EGF Epidermal growt 94.8 0.032 6.9E-07 34.4 2.9 24 38-61 6-30 (35)
117 PF05787 DUF839: Bacterial pro 94.6 1.2 2.6E-05 46.3 15.5 75 315-390 352-458 (524)
118 PF06433 Me-amine-dh_H: Methyl 94.6 4.7 0.0001 39.1 25.1 198 144-355 33-288 (342)
119 PF14583 Pectate_lyase22: Olig 94.2 3.6 7.8E-05 40.6 16.6 165 204-407 47-231 (386)
120 PF12947 EGF_3: EGF domain; I 94.0 0.033 7.1E-07 34.8 1.5 30 77-108 5-36 (36)
121 cd00054 EGF_CA Calcium-binding 93.6 0.094 2E-06 32.6 3.3 29 31-60 3-33 (38)
122 PF05787 DUF839: Bacterial pro 93.6 0.71 1.5E-05 48.0 11.3 65 145-212 346-454 (524)
123 COG5276 Uncharacterized conser 93.4 7.2 0.00016 36.8 23.5 67 366-446 253-323 (370)
124 COG5276 Uncharacterized conser 93.3 7.4 0.00016 36.7 23.0 221 159-446 137-364 (370)
125 PF01731 Arylesterase: Arylest 93.1 0.27 5.9E-06 37.5 5.6 33 301-333 41-74 (86)
126 smart00181 EGF Epidermal growt 92.7 0.082 1.8E-06 32.5 1.8 24 78-101 6-30 (35)
127 PF13449 Phytase-like: Esteras 92.6 1.5 3.2E-05 42.8 11.4 71 369-443 86-168 (326)
128 KOG0291|consensus 92.5 16 0.00036 38.7 22.6 196 159-397 402-611 (893)
129 PF00008 EGF: EGF-like domain 92.4 0.055 1.2E-06 32.8 0.7 18 43-60 11-29 (32)
130 TIGR02276 beta_rpt_yvtn 40-res 92.3 0.78 1.7E-05 29.2 6.3 41 159-200 2-42 (42)
131 cd00054 EGF_CA Calcium-binding 92.2 0.11 2.3E-06 32.4 2.0 30 71-100 2-33 (38)
132 KOG0279|consensus 92.2 10 0.00022 35.5 23.5 194 150-397 65-261 (315)
133 COG4247 Phy 3-phytase (myo-ino 92.0 8.6 0.00019 35.5 14.3 91 167-259 120-226 (364)
134 KOG0291|consensus 91.9 20 0.00043 38.2 22.4 133 148-328 350-494 (893)
135 COG0823 TolB Periplasmic compo 91.8 16 0.00035 37.0 19.4 124 172-330 219-343 (425)
136 cd00053 EGF Epidermal growth f 91.7 0.2 4.3E-06 30.6 2.8 20 42-61 12-31 (36)
137 PF06247 Plasmod_Pvs28: Plasmo 91.5 0.14 3E-06 44.4 2.5 64 44-110 13-87 (197)
138 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.0 22 0.00048 37.2 24.2 48 154-211 239-286 (527)
139 KOG1217|consensus 90.4 0.8 1.7E-05 46.9 7.4 60 42-102 243-304 (487)
140 PF12999 PRKCSH-like: Glucosid 90.1 0.13 2.7E-06 44.7 0.9 20 6-25 48-67 (176)
141 PRK13616 lipoprotein LpqB; Pro 90.1 29 0.00062 36.9 21.0 188 150-389 351-560 (591)
142 KOG1217|consensus 89.4 1.1 2.5E-05 45.7 7.6 102 12-115 150-275 (487)
143 KOG0318|consensus 88.8 30 0.00064 35.3 23.5 209 170-446 299-512 (603)
144 TIGR02171 Fb_sc_TIGR02171 Fibr 88.3 21 0.00046 39.1 16.0 98 160-261 319-424 (912)
145 cd00053 EGF Epidermal growth f 87.9 0.35 7.6E-06 29.4 1.7 20 82-101 12-31 (36)
146 COG3823 Glutamine cyclotransfe 87.4 21 0.00046 32.0 15.7 110 316-440 134-247 (262)
147 PRK13616 lipoprotein LpqB; Pro 86.8 47 0.001 35.3 22.9 200 192-449 350-565 (591)
148 PF00930 DPPIV_N: Dipeptidyl p 86.7 34 0.00073 33.7 21.0 69 336-407 249-323 (353)
149 PF09064 Tme5_EGF_like: Thromb 86.4 0.85 1.8E-05 27.7 2.5 23 40-63 8-30 (34)
150 KOG4441|consensus 86.1 50 0.0011 35.0 19.7 192 196-443 327-532 (571)
151 TIGR02276 beta_rpt_yvtn 40-res 85.7 3.1 6.7E-05 26.3 5.4 42 322-376 1-42 (42)
152 PF00008 EGF: EGF-like domain 85.4 0.47 1E-05 28.7 1.1 22 79-100 5-29 (32)
153 PF00930 DPPIV_N: Dipeptidyl p 84.9 42 0.0009 33.0 17.6 78 294-380 260-340 (353)
154 PRK11138 outer membrane biogen 84.6 46 0.001 33.2 24.0 56 378-446 334-389 (394)
155 PF02897 Peptidase_S9_N: Proly 82.6 56 0.0012 32.8 25.9 197 153-397 128-356 (414)
156 KOG4328|consensus 82.2 58 0.0013 32.7 15.7 194 149-397 187-398 (498)
157 PF05694 SBP56: 56kDa selenium 81.5 4.7 0.0001 40.3 6.9 72 369-441 313-393 (461)
158 KOG1446|consensus 81.5 50 0.0011 31.4 26.9 200 149-403 15-221 (311)
159 KOG0292|consensus 81.5 89 0.0019 34.3 19.8 96 151-251 54-149 (1202)
160 PF12661 hEGF: Human growth fa 81.2 0.76 1.6E-05 21.6 0.7 9 52-60 1-9 (13)
161 KOG0279|consensus 80.6 51 0.0011 31.0 25.3 202 150-403 17-226 (315)
162 PRK11138 outer membrane biogen 80.1 67 0.0015 32.0 20.6 30 370-403 287-316 (394)
163 KOG0272|consensus 79.6 68 0.0015 31.9 17.7 232 150-447 219-455 (459)
164 KOG4378|consensus 79.5 76 0.0017 32.3 16.5 71 315-397 167-238 (673)
165 PF05694 SBP56: 56kDa selenium 79.1 53 0.0012 33.1 13.2 61 315-387 314-393 (461)
166 KOG1225|consensus 77.8 3.8 8.3E-05 42.1 5.2 9 52-60 297-305 (525)
167 PF13360 PQQ_2: PQQ-like domai 76.8 57 0.0012 29.4 23.5 48 378-440 172-219 (238)
168 KOG4649|consensus 75.3 72 0.0016 29.8 18.3 133 193-397 32-164 (354)
169 KOG4441|consensus 75.1 77 0.0017 33.6 14.2 131 294-444 349-486 (571)
170 PTZ00420 coronin; Provisional 73.8 1.3E+02 0.0027 31.9 27.8 98 151-252 77-182 (568)
171 KOG0289|consensus 73.6 1E+02 0.0022 30.8 21.7 22 238-259 304-325 (506)
172 KOG0285|consensus 73.1 96 0.0021 30.3 21.8 236 107-405 155-395 (460)
173 PF02897 Peptidase_S9_N: Proly 72.6 1.1E+02 0.0024 30.7 29.2 137 293-451 201-354 (414)
174 KOG3914|consensus 72.1 1.1E+02 0.0023 30.3 13.4 148 207-404 76-228 (390)
175 PF14583 Pectate_lyase22: Olig 72.0 1.1E+02 0.0024 30.4 19.5 176 163-363 51-232 (386)
176 KOG1274|consensus 72.0 1.4E+02 0.0031 32.8 14.8 101 346-450 75-176 (933)
177 PF06739 SBBP: Beta-propeller 71.8 3.5 7.5E-05 26.0 2.0 19 368-387 13-31 (38)
178 KOG0268|consensus 68.9 1.1E+02 0.0024 29.9 12.1 67 162-234 80-146 (433)
179 TIGR03075 PQQ_enz_alc_DH PQQ-d 67.8 1.6E+02 0.0035 30.8 17.7 65 315-392 271-337 (527)
180 KOG0310|consensus 67.7 1.5E+02 0.0031 30.1 19.8 101 160-263 79-179 (487)
181 KOG1274|consensus 67.1 2E+02 0.0044 31.6 21.8 138 152-332 17-158 (933)
182 TIGR03300 assembly_YfgL outer 66.9 1.4E+02 0.0029 29.5 23.8 54 378-444 319-372 (377)
183 PF13360 PQQ_2: PQQ-like domai 66.5 99 0.0021 27.8 21.2 87 160-257 36-130 (238)
184 COG3211 PhoX Predicted phospha 65.7 73 0.0016 33.2 10.8 64 190-256 415-517 (616)
185 COG4247 Phy 3-phytase (myo-ino 64.7 1.2E+02 0.0027 28.2 18.2 19 315-333 207-225 (364)
186 KOG1446|consensus 64.3 1.4E+02 0.0029 28.6 25.5 224 163-442 72-304 (311)
187 PLN00181 protein SPA1-RELATED; 64.1 2.4E+02 0.0051 31.3 29.1 106 150-259 485-597 (793)
188 COG3211 PhoX Predicted phospha 63.9 83 0.0018 32.8 10.8 108 145-256 413-572 (616)
189 KOG0273|consensus 62.7 1.8E+02 0.0039 29.5 18.3 57 148-204 316-372 (524)
190 KOG0318|consensus 62.3 1.9E+02 0.0042 29.7 24.7 36 150-186 192-228 (603)
191 PF09910 DUF2139: Uncharacteri 62.2 1.5E+02 0.0032 28.4 16.7 28 198-227 41-68 (339)
192 TIGR03300 assembly_YfgL outer 60.8 1.7E+02 0.0038 28.7 29.2 31 369-403 271-301 (377)
193 KOG0918|consensus 58.1 31 0.00066 34.1 6.4 71 371-441 315-408 (476)
194 PTZ00421 coronin; Provisional 57.6 2.4E+02 0.0052 29.3 32.4 106 150-259 77-189 (493)
195 KOG0772|consensus 54.3 2.7E+02 0.0057 28.8 19.7 89 140-233 159-252 (641)
196 KOG0292|consensus 54.2 3.5E+02 0.0075 30.1 19.1 93 162-259 219-313 (1202)
197 smart00284 OLF Olfactomedin-li 53.6 1.9E+02 0.0042 27.0 11.9 119 335-455 34-162 (255)
198 PTZ00421 coronin; Provisional 53.1 2.8E+02 0.0062 28.8 26.2 64 192-258 76-146 (493)
199 KOG0273|consensus 52.8 2.7E+02 0.0058 28.3 20.1 137 155-333 240-379 (524)
200 cd00216 PQQ_DH Dehydrogenases 52.8 2.8E+02 0.0061 28.6 25.3 58 372-443 401-458 (488)
201 KOG4328|consensus 52.1 1.1E+02 0.0025 30.7 9.3 56 346-402 247-313 (498)
202 PF12946 EGF_MSP1_1: MSP1 EGF 51.4 8 0.00017 24.2 0.9 19 43-61 12-31 (37)
203 KOG0650|consensus 50.8 33 0.00072 35.6 5.6 63 192-259 567-629 (733)
204 PTZ00420 coronin; Provisional 50.5 3.3E+02 0.0072 28.8 29.4 62 192-256 75-144 (568)
205 PF10647 Gmad1: Lipoprotein Lp 49.6 2.2E+02 0.0048 26.5 20.5 100 151-256 26-130 (253)
206 KOG0315|consensus 48.6 2.3E+02 0.005 26.4 18.3 129 164-333 13-145 (311)
207 PHA02713 hypothetical protein; 47.3 3.7E+02 0.008 28.4 20.8 83 347-444 432-523 (557)
208 KOG1225|consensus 46.9 25 0.00053 36.4 4.1 37 51-101 327-363 (525)
209 PLN00181 protein SPA1-RELATED; 45.6 4.6E+02 0.01 29.0 30.6 73 151-226 535-607 (793)
210 PF02191 OLF: Olfactomedin-lik 44.0 2.7E+02 0.0059 25.9 17.4 33 365-397 216-248 (250)
211 KOG0276|consensus 43.7 4.3E+02 0.0092 28.1 20.9 242 156-442 189-473 (794)
212 KOG2106|consensus 42.2 4.1E+02 0.0088 27.4 17.6 160 164-382 342-506 (626)
213 KOG0268|consensus 42.1 3.5E+02 0.0076 26.6 15.1 79 315-408 232-311 (433)
214 PF01826 TIL: Trypsin Inhibito 39.8 18 0.00039 24.6 1.4 21 53-74 35-55 (55)
215 PTZ00486 apyrase Superfamily; 37.8 1.3E+02 0.0028 29.4 7.2 59 378-442 123-182 (352)
216 TIGR03074 PQQ_membr_DH membran 37.5 6.1E+02 0.013 28.1 17.8 101 316-446 378-481 (764)
217 KOG3881|consensus 37.2 2.8E+02 0.0061 27.4 9.3 87 114-204 216-303 (412)
218 KOG0263|consensus 36.6 5.8E+02 0.013 27.6 19.3 189 151-397 454-648 (707)
219 KOG0650|consensus 36.2 5.5E+02 0.012 27.2 17.9 97 281-398 526-637 (733)
220 PF00954 S_locus_glycop: S-loc 35.3 25 0.00055 28.0 1.8 29 71-100 77-107 (110)
221 PF12999 PRKCSH-like: Glucosid 35.3 21 0.00046 31.1 1.4 20 5-24 88-110 (176)
222 PHA02887 EGF-like protein; Pro 35.2 33 0.00071 27.5 2.3 23 44-70 99-123 (126)
223 PF08662 eIF2A: Eukaryotic tra 34.9 3.2E+02 0.007 24.1 17.7 123 218-386 40-162 (194)
224 PF01683 EB: EB module; Inter 34.7 59 0.0013 21.8 3.3 11 92-102 38-48 (52)
225 KOG0278|consensus 33.7 4E+02 0.0087 24.9 13.7 123 303-453 175-298 (334)
226 KOG3914|consensus 33.6 4.9E+02 0.011 25.8 12.1 108 315-448 110-219 (390)
227 PF07433 DUF1513: Protein of u 33.3 4.5E+02 0.0097 25.3 20.7 56 155-212 57-117 (305)
228 TIGR03074 PQQ_membr_DH membran 32.8 7.2E+02 0.016 27.5 16.2 16 242-257 379-394 (764)
229 PF07974 EGF_2: EGF-like domai 32.4 70 0.0015 19.2 2.9 10 51-60 19-28 (32)
230 KOG0270|consensus 32.2 5.4E+02 0.012 26.0 19.0 58 152-211 247-304 (463)
231 KOG0284|consensus 32.0 3.1E+02 0.0068 27.3 8.7 60 150-212 182-241 (464)
232 TIGR02171 Fb_sc_TIGR02171 Fibr 31.5 3.6E+02 0.0079 30.1 10.0 97 335-445 319-424 (912)
233 PF05345 He_PIG: Putative Ig d 31.4 48 0.001 22.1 2.3 23 365-387 8-30 (49)
234 PHA03099 epidermal growth fact 30.8 41 0.00089 27.5 2.2 12 49-60 65-76 (139)
235 KOG0289|consensus 30.5 5.8E+02 0.013 25.8 21.9 66 192-261 304-370 (506)
236 KOG2048|consensus 30.0 7.1E+02 0.015 26.6 18.8 192 154-397 388-600 (691)
237 KOG0294|consensus 29.8 5.2E+02 0.011 25.0 21.3 99 151-259 46-148 (362)
238 KOG0196|consensus 29.7 42 0.00092 36.4 2.7 48 51-101 259-318 (996)
239 PF06079 Apyrase: Apyrase; In 29.3 2.4E+02 0.0051 26.9 7.3 55 378-439 62-116 (291)
240 KOG1524|consensus 29.1 6.8E+02 0.015 26.1 14.7 58 164-225 119-176 (737)
241 KOG3658|consensus 27.9 1.1E+02 0.0025 32.4 5.3 23 33-55 512-535 (764)
242 KOG0272|consensus 27.5 6.5E+02 0.014 25.3 18.1 194 150-397 176-374 (459)
243 KOG0282|consensus 27.3 6.9E+02 0.015 25.6 11.6 108 150-262 301-409 (503)
244 KOG0994|consensus 26.2 94 0.002 35.2 4.5 18 83-100 877-895 (1758)
245 KOG0994|consensus 25.8 1.3E+02 0.0028 34.2 5.4 14 52-69 1085-1098(1758)
246 COG1520 FOG: WD40-like repeat 25.7 6.4E+02 0.014 24.7 12.3 111 318-442 81-206 (370)
247 KOG4258|consensus 25.3 62 0.0014 35.3 3.0 56 52-108 263-323 (1025)
248 PF08309 LVIVD: LVIVD repeat; 25.2 1.5E+02 0.0032 19.1 3.7 23 426-448 4-26 (42)
249 KOG2919|consensus 25.2 6.4E+02 0.014 24.5 17.7 93 160-257 122-227 (406)
250 COG4222 Uncharacterized protei 24.5 4.2E+02 0.0091 26.5 8.4 65 315-385 140-217 (391)
251 PF14251 DUF4346: Domain of un 24.2 2E+02 0.0043 23.3 4.9 29 369-397 41-69 (119)
252 PF07433 DUF1513: Protein of u 23.3 6.8E+02 0.015 24.1 26.3 179 198-403 57-251 (305)
253 PF14251 DUF4346: Domain of un 23.3 2.5E+02 0.0054 22.7 5.3 47 154-212 12-58 (119)
254 PF08091 Toxin_21: Spider inse 23.0 64 0.0014 20.0 1.5 18 5-22 1-18 (39)
255 PF02191 OLF: Olfactomedin-lik 22.5 6.3E+02 0.014 23.5 17.2 95 160-259 78-190 (250)
256 KOG0308|consensus 20.7 1.1E+03 0.023 25.4 17.3 69 315-397 258-326 (735)
No 1
>KOG1214|consensus
Probab=100.00 E-value=4.9e-44 Score=354.43 Aligned_cols=223 Identities=28% Similarity=0.447 Sum_probs=190.5
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEE-----EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRI-----VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS 234 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~-----~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~ 234 (461)
+..|.++. ..+|....++|.... +++.-.-.-|.||++|-... ++||+|+ ....|.|++|.|...++++.
T Consensus 990 gt~LL~aq--g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~--mvyWtDv-~g~SI~rasL~G~Ep~ti~n 1064 (1289)
T KOG1214|consen 990 GTFLLYAQ--GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRER--MVYWTDV-AGRSISRASLEGAEPETIVN 1064 (1289)
T ss_pred cceEEEec--cceEEEeecCcchhchhhhhceEecccceeeeeecccccc--eEEEeec-CCCccccccccCCCCceeec
Confidence 34555544 478999999886532 22222223489999999977 9999994 55799999999999999999
Q ss_pred cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe
Q psy17325 235 TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL 314 (461)
Q Consensus 235 ~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~ 314 (461)
.++.+|.|||||+..+++||+|+..+ +|+++.+||+.+++|+...+
T Consensus 1065 ~~L~SPEGiAVDh~~Rn~ywtDS~lD----------------------------------~IevA~LdG~~rkvLf~tdL 1110 (1289)
T KOG1214|consen 1065 SGLISPEGIAVDHIRRNMYWTDSVLD----------------------------------KIEVALLDGSERKVLFYTDL 1110 (1289)
T ss_pred ccCCCccceeeeeccceeeeeccccc----------------------------------hhheeecCCceeeEEEeecc
Confidence 99999999999999999999999885 58899999999999999988
Q ss_pred --eeeEEEeccCCeEEEeecCceeeEEEeecC-CCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCe
Q psy17325 315 --YEALALDLENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 391 (461)
Q Consensus 315 --p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~ 391 (461)
|++|++|+.+|+|||| ||. ++++|++..|||+++++|+.+++..|+||++|+..+.|-|+|+++++
T Consensus 1111 VNPR~iv~D~~rgnLYwt-----------DWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~r 1179 (1289)
T KOG1214|consen 1111 VNPRAIVVDPIRGNLYWT-----------DWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKR 1179 (1289)
T ss_pred cCcceEEeecccCceeec-----------cccccCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcc
Confidence 9999999999987765 665 78999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 392 IDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 392 I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
++.+..+ |..++++.++. .+||+|+-+++.+|||||+.+.|
T Consensus 1180 leC~~p~--g~gRR~i~~~L------------qYPF~itsy~~~fY~TDWk~n~v 1220 (1289)
T KOG1214|consen 1180 LECTLPD--GTGRRVIQNNL------------QYPFSITSYADHFYHTDWKRNGV 1220 (1289)
T ss_pred eeEecCC--CCcchhhhhcc------------cCceeeeeccccceeeccccCce
Confidence 9999995 44445555432 35899999999999999999766
No 2
>KOG1214|consensus
Probab=100.00 E-value=7.8e-37 Score=303.45 Aligned_cols=234 Identities=22% Similarity=0.361 Sum_probs=209.2
Q ss_pred ceeEEEeccccceeecccccCcccc-cceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCC
Q psy17325 115 AAFLIISNRHSILVADLEEKGKDHR-AQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQ 193 (461)
Q Consensus 115 ~~~l~~~~~~~I~~~~l~~~~~~~s-~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~ 193 (461)
..+|+++...+|....+++..+... ....+.---+-|.||++|-..+.|||+|.....|.++.|+|...++++...+..
T Consensus 990 gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~S 1069 (1289)
T KOG1214|consen 990 GTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLIS 1069 (1289)
T ss_pred cceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCC
Confidence 4589999988998888887766542 222222222468899999999999999999999999999999999999999999
Q ss_pred ceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 194 p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
|.|||+|...+ .|||+| ....+|+.+.|||+.+++|+.+++..|.+|++|+..++|||+|...+.
T Consensus 1070 PEGiAVDh~~R--n~ywtD-S~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRen------------ 1134 (1289)
T KOG1214|consen 1070 PEGIAVDHIRR--NMYWTD-SVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNREN------------ 1134 (1289)
T ss_pred ccceeeeeccc--eeeeec-cccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccC------------
Confidence 99999999977 999999 667899999999999999999999999999999999999999987654
Q ss_pred ccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEE
Q psy17325 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIER 351 (461)
Q Consensus 274 ~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~ 351 (461)
.+|++..+||+++++++.+.+ |+||.+||..+.|-|.|.+ +.|++-
T Consensus 1135 --------------------PkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAG------------t~rleC 1182 (1289)
T KOG1214|consen 1135 --------------------PKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAG------------TKRLEC 1182 (1289)
T ss_pred --------------------CcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecC------------CcceeE
Confidence 579999999999999999887 9999999999999999988 999999
Q ss_pred EeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 352 IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 352 ~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
...+|..|+++. .+|++|.+|+- ..+.+||+||+.+.|.++++-
T Consensus 1183 ~~p~g~gRR~i~-~~LqYPF~its--y~~~fY~TDWk~n~vvsv~~~ 1226 (1289)
T KOG1214|consen 1183 TLPDGTGRRVIQ-NNLQYPFSITS--YADHFYHTDWKRNGVVSVNKH 1226 (1289)
T ss_pred ecCCCCcchhhh-hcccCceeeee--ccccceeeccccCceEEeecc
Confidence 999999999999 99999999999 466699999999999999994
No 3
>KOG1215|consensus
Probab=99.97 E-value=7.8e-30 Score=279.49 Aligned_cols=333 Identities=33% Similarity=0.646 Sum_probs=269.7
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC----------------------------CCCCCCcccCCCCCCCCCceeCCCCceE
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG----------------------------PGCDLAECKHKFGLCSNTCHPTPLGALC 53 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~----------------------------~~C~~~~C~~~~~~C~~~C~~~~~~~~C 53 (461)
++.|++..++|++..||++|+||. ..|...+|......|.+.|........|
T Consensus 269 ~~~~~~~~~~~~g~~d~pdg~de~~~~~~~~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 348 (877)
T KOG1215|consen 269 DGDCSDRQKLCDGDLDCPDGLDEDYCKKKLYWSMNVDGSGRRILLSKLCHGYWTDGLNECAERVLKCSHKCPDVSVGPRC 348 (877)
T ss_pred CCCCccceEEecCccCCCCcccccccccceeeeeecccCCceeeecccCccccccccccchhhcccccCCCCccccCCcc
Confidence 457899999999999999999985 2334566666667788888888888999
Q ss_pred eCCCCCeecCCCCceecCcceecCCcccCcee-eccCCccccCCCCeeeeCCCCceeeccccceeEEEeccccceeeccc
Q psy17325 54 TCPPGEILSNDSVTCQDMNECEQPGYCSQMCT-NTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLE 132 (461)
Q Consensus 54 ~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~-~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~~~~~~~I~~~~l~ 132 (461)
.|..++.+...... ....++..++.|+|.|. +.++.+.|.|..||.+..+. |.....+..+++++++..++.+.++
T Consensus 349 ~~~~~~~~~~~~~~-~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~~s~~~~ir~~~~~ 425 (877)
T KOG1215|consen 349 DCMGAKVLPLGART-DSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK--CEASDQPEAFLLFSNRHDIRRISLD 425 (877)
T ss_pred cCCccceecccccc-cCCcccccCCccceeccCCCCCceeEecCCCcEeccCC--ceecCCCCcEEEEecCccceecccC
Confidence 99999987655555 22344446789999998 56899999999999988766 7776667889999999888877554
Q ss_pred ccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee
Q psy17325 133 EKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD 212 (461)
Q Consensus 133 ~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td 212 (461)
.... ...+. ....+..+..|..++ .+||+|
T Consensus 426 ~~~~-----------------------------------------------~~p~~-~~~~~~~~d~d~~~~--~i~~~d 455 (877)
T KOG1215|consen 426 CSDV-----------------------------------------------SRPLE-GIKNAVALDFDVLNN--RIYWAD 455 (877)
T ss_pred CCcc-----------------------------------------------eEEcc-CCccceEEEEEecCC--EEEEEe
Confidence 2200 01111 113466777888877 999999
Q ss_pred cCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCc
Q psy17325 213 WGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGV 292 (461)
Q Consensus 213 ~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~ 292 (461)
....+|.++.++|.....+...+.-.|.+||+|+..+.+||+|....
T Consensus 456 -~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~-------------------------------- 502 (877)
T KOG1215|consen 456 -LSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNC-------------------------------- 502 (877)
T ss_pred -ccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCc--------------------------------
Confidence 55679999999998887777778889999999999999999999884
Q ss_pred ceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCc
Q psy17325 293 PLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370 (461)
Q Consensus 293 ~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p 370 (461)
.|.+..++|..+.+++...+ |+.+++||..+ +|||+||+..++|.|+.|||+.+.+++..++.+|
T Consensus 503 --~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g-----------~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p 569 (877)
T KOG1215|consen 503 --LIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKG-----------LMFWTDWGQPPRIERASLDGSERAVLVTNGILWP 569 (877)
T ss_pred --eeEEEEccCCceeEEEecCCCCccceeeccccC-----------eeEEecCCCCchhhhhcCCCCCceEEEeCCccCC
Confidence 57788899999999998876 99999999877 6777888877799999999999999998889999
Q ss_pred eeEEEecCCCeEEEEcCCCC-eEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 371 NGLTLDIATRRVYFADSKLD-FIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~-~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
+||++|..++++||+|.... .|++++. +|..+. +..... .++|++++++++++||+|+..+.+
T Consensus 570 ~glt~d~~~~~~yw~d~~~~~~i~~~~~--~g~~r~-~~~~~~----------~~~p~~~~~~~~~iyw~d~~~~~~ 633 (877)
T KOG1215|consen 570 NGLTIDYETDRLYWADAKLDYTIESANM--DGQNRR-VVDSED----------LPHPFGLSVFEDYIYWTDWSNRAI 633 (877)
T ss_pred CcceEEeecceeEEEcccCCcceeeeec--CCCceE-Eecccc----------CCCceEEEEecceeEEeeccccce
Confidence 99999999999999999999 7999999 677765 222111 135899999999999999999855
No 4
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=6.1e-21 Score=210.10 Aligned_cols=265 Identities=18% Similarity=0.225 Sum_probs=182.9
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC-------------CCCCceeEEEcCCCCceEEE
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD-------------NITQPRGMMLDPSPGTRWLF 209 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~-------------~~~~p~~ia~d~~~g~~~ly 209 (461)
++.+.+..|.++|+|..+++||++|..+++|.+.+++|.....+... .+..|.||++|+..+ .||
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn--~LY 639 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN--LLY 639 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC--EEE
Confidence 44667899999999998999999999999999999999876555431 256799999999877 999
Q ss_pred EeecCCCCcEEEEecCCCCcEEEEec----------------ccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 210 WTDWGENPRIERIGMDGSNRSTIIST----------------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 210 ~td~~~~~~I~~~~~dG~~~~~i~~~----------------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
++| ..+.+|.++++.+...+++... .+..|.++++|+.+++||++|...++|+..+
T Consensus 640 VaD-t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d------- 711 (1057)
T PLN02919 640 VAD-TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYN------- 711 (1057)
T ss_pred EEe-CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEE-------
Confidence 999 5667899998876555555321 1568999999998999999999887654322
Q ss_pred ccceeeeEEEEEecCCCCcceeeeEEeCCCCceE----EEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCC
Q psy17325 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS----ILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENP 347 (461)
Q Consensus 274 ~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~----~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~ 347 (461)
... +.+....-+|.... ......+ |.||+++|.++.||+++.. ++
T Consensus 712 -------------~~~----g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------------n~ 762 (1057)
T PLN02919 712 -------------ISD----GVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------------SS 762 (1057)
T ss_pred -------------CCC----CeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------------CC
Confidence 111 11222221221100 0001112 9999999998899999988 77
Q ss_pred ceEEEeecCCCeEEEee---------------------CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEE
Q psy17325 348 RIERIGMDGSNRSTIIS---------------------TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 348 ~I~~~~~dG~~~~~l~~---------------------~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~ 406 (461)
+|.+.++++.....+.. ..+..|.||++| .++.||++|..+++|.+++.+ ++....+
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~-tg~v~ti 840 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPA-TKRVTTL 840 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe-CCCcEEEEECCCCEEEEEECC-CCeEEEE
Confidence 88888876543332220 135689999999 567899999999999999993 3333333
Q ss_pred EEccccceeecc-CCCCCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 407 LIDLMVEFTNDL-MGDNGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 407 ~~~~~~~~~~~~-~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
...+..+..... ....+..|.+|++. +|+||++|..+++||+
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 332221111000 00113346777765 5789999999999864
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.86 E-value=5.9e-19 Score=165.57 Aligned_cols=228 Identities=22% Similarity=0.305 Sum_probs=166.8
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
|||+++|...+.|||+|...++|.+.++++.....+.... |.|++++...| .||+++ . ..+...++.....+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g--~l~v~~-~--~~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDG--RLYVAD-S--GGIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEEEECTTS--EEEEEE-T--TCEEEEETTTTEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEEEEccCC--EEEEEE-c--CceEEEecCCCcEE
Confidence 7999999889999999999999999999998766544433 99999996557 899999 3 34555576665555
Q ss_pred EEEec-----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 231 TIIST-----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 231 ~i~~~-----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.+... ....|+++++|+ .++||+++.......... .+.|++...+|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~--------------------------~g~v~~~~~~~~- 125 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGID--------------------------PGSVYRIDPDGK- 125 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGG--------------------------SEEEEEEETTSE-
T ss_pred EEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccc--------------------------ccceEEECCCCe-
Confidence 55553 567899999997 577999987653221100 046888998844
Q ss_pred eEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-----eEEEeeC--CCCCceeEEEec
Q psy17325 306 ASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-----RSTIIST--KIYWPNGLTLDI 377 (461)
Q Consensus 306 ~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-----~~~l~~~--~l~~p~glaiD~ 377 (461)
.+.+..... |+||+++|.++.||++++. ..+|++++++... ++++... ....|.||++|
T Consensus 126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD- 192 (246)
T PF08450_consen 126 VTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD- 192 (246)
T ss_dssp EEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-
T ss_pred EEEEecCcccccceEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc-
Confidence 444444322 9999999999999999998 8899999997432 3445432 22369999999
Q ss_pred CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEee---eCCEEEEEeC
Q psy17325 378 ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDL---ENGMLYYSTE 441 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~lYwtd~ 441 (461)
.+|+||+++...++|.+++. +|.....+....+ .|..+++ +.+.||+|..
T Consensus 193 ~~G~l~va~~~~~~I~~~~p--~G~~~~~i~~p~~------------~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDP--DGKLLREIELPVP------------RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTS-EEEEEETTTEEEEEET--TSCEEEEEE-SSS------------SEEEEEEESTTSSEEEEEEB
T ss_pred CCCCEEEEEcCCCEEEEECC--CccEEEEEcCCCC------------CEEEEEEECCCCCEEEEEeC
Confidence 68999999999999999999 6876555543322 2566766 4578999964
No 6
>KOG1215|consensus
Probab=99.84 E-value=1.8e-19 Score=197.88 Aligned_cols=253 Identities=35% Similarity=0.645 Sum_probs=174.7
Q ss_pred CcccCCCCCCCCCce-eCCCCceEeCCCCCeecCCCCceecCc---cee---cCCcccCceeeccCCccccCCCCeeeeC
Q psy17325 31 AECKHKFGLCSNTCH-PTPLGALCTCPPGEILSNDSVTCQDMN---ECE---QPGYCSQMCTNTKGSYICSCNEGYVLEY 103 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~-~~~~~~~C~C~~G~~l~~~~~~C~d~~---eC~---~~~~C~~~C~~~~g~~~C~C~~g~~l~~ 103 (461)
+.|...++.|.+.|. +.++.+.|.|..||.+..++ |.... ++. ....+...+ ..+. ...+.+..
T Consensus 365 ~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~~s~~~~ir~~~------~~~~-~~~~p~~~ 435 (877)
T KOG1215|consen 365 NPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK--CEASDQPEAFLLFSNRHDIRRIS------LDCS-DVSRPLEG 435 (877)
T ss_pred CcccccCCccceeccCCCCCceeEecCCCcEeccCC--ceecCCCCcEEEEecCccceecc------cCCC-cceEEccC
Confidence 467777889999998 45899999999999886655 53322 111 011111111 1111 00011110
Q ss_pred CCCce-eeccccceeEEEec--cccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCC
Q psy17325 104 DNHTC-KAINHSAAFLIISN--RHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180 (461)
Q Consensus 104 ~~~~C-~~~~~~~~~l~~~~--~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G 180 (461)
..... .+.+.....+..+. ...|......+.. ...++..|+..|+++|+||+.+++||+|.....|.+.+++|
T Consensus 436 ~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~----~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g 511 (877)
T KOG1215|consen 436 IKNAVALDFDVLNNRIYWADLSDEKICRASQDGSS----ECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDG 511 (877)
T ss_pred CccceEEEEEecCCEEEEEeccCCeEeeeccCCCc----cceEeccCccccCcEEEEeccCCceecccCCceeEEEEccC
Confidence 00000 01111111222222 1222222222211 22356788899999999999999999999999999999999
Q ss_pred CcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCc
Q psy17325 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 260 (461)
Q Consensus 181 ~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~ 260 (461)
..+.+++...+..|+.+++||..| +|||+||+..++|.|+.|||+.+..++..++.+|+||++|...+++||+|....
T Consensus 512 ~~~~vl~~~~l~~~r~~~v~p~~g--~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~ 589 (877)
T KOG1215|consen 512 SSRKVLVSKDLDLPRSIAVDPEKG--LMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLD 589 (877)
T ss_pred CceeEEEecCCCCccceeeccccC--eeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCC
Confidence 998899888888999999999999 999999987779999999999999999999999999999999999999999885
Q ss_pred eeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecC
Q psy17325 261 FIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 261 ~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~ 333 (461)
. .|..++.+|..++++....+ |.++++- .+++||++..
T Consensus 590 ~---------------------------------~i~~~~~~g~~r~~~~~~~~~~p~~~~~~--~~~iyw~d~~ 629 (877)
T KOG1215|consen 590 Y---------------------------------TIESANMDGQNRRVVDSEDLPHPFGLSVF--EDYIYWTDWS 629 (877)
T ss_pred c---------------------------------ceeeeecCCCceEEeccccCCCceEEEEe--cceeEEeecc
Confidence 2 48889999999984444444 6666654 5655554433
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.78 E-value=5.3e-17 Score=179.12 Aligned_cols=222 Identities=18% Similarity=0.283 Sum_probs=150.0
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC----------------CCCCceeEEEcCCCCceEEEEe
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD----------------NITQPRGMMLDPSPGTRWLFWT 211 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~----------------~~~~p~~ia~d~~~g~~~ly~t 211 (461)
+..|.||++|..++.|||+|..+++|.++++.+...+++... .+..|.+|++||..+ .||++
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g--~LyVa 700 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE--KVYIA 700 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC--eEEEE
Confidence 568999999988888999999999999999887766655321 156899999999888 99999
Q ss_pred ecCCCCcEEEEecCCCCcEEEEe--------------cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccce
Q psy17325 212 DWGENPRIERIGMDGSNRSTIIS--------------TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYST 277 (461)
Q Consensus 212 d~~~~~~I~~~~~dG~~~~~i~~--------------~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~ 277 (461)
| ..+.+|++.+..+....++.. ..+..|.||++++.++.||++|...++|+..+.+...
T Consensus 701 d-~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~------ 773 (1057)
T PLN02919 701 M-AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG------ 773 (1057)
T ss_pred E-CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc------
Confidence 9 556788888875433322211 1356899999999888899999998766543321100
Q ss_pred eeeEEEEEecCCCCcceeeeEE-eCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC
Q psy17325 278 IFRKLYWIDEGGNGVPLKIGKA-NMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG 356 (461)
Q Consensus 278 ~~~~~yw~d~~~~~~~~~I~~~-~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG 356 (461)
..+.-.+....+...... ..+|......+ ..|.+|++|+ +|.||+++.. +++|.+.+.++
T Consensus 774 ----~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l--~~P~Gvavd~-dG~LYVADs~------------N~rIrviD~~t 834 (1057)
T PLN02919 774 ----SRLLAGGDPTFSDNLFKFGDHDGVGSEVLL--QHPLGVLCAK-DGQIYVADSY------------NHKIKKLDPAT 834 (1057)
T ss_pred ----EEEEEecccccCcccccccCCCCchhhhhc--cCCceeeEeC-CCcEEEEECC------------CCEEEEEECCC
Confidence 000000000000000000 00111111100 1199999997 5679999988 88888888876
Q ss_pred CCeEEEee-------------CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 357 SNRSTIIS-------------TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 357 ~~~~~l~~-------------~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
.....+.. ..+..|.||++| .+++||++|..+++|..++++
T Consensus 835 g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd-~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 835 KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG-ENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CeEEEEeccCCcCCCCCcccccccCCceEEEEe-CCCCEEEEECCCCEEEEEECC
Confidence 65554431 245689999999 567899999999999999994
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.73 E-value=1.2e-15 Score=143.05 Aligned_cols=194 Identities=25% Similarity=0.339 Sum_probs=137.0
Q ss_pred ceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 194 p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
|.|+++|+..| .|||+| ....+|++.+.++...+.+... .|.|++++...++||+++...
T Consensus 2 ~Egp~~d~~~g--~l~~~D-~~~~~i~~~~~~~~~~~~~~~~---~~~G~~~~~~~g~l~v~~~~~-------------- 61 (246)
T PF08450_consen 2 GEGPVWDPRDG--RLYWVD-IPGGRIYRVDPDTGEVEVIDLP---GPNGMAFDRPDGRLYVADSGG-------------- 61 (246)
T ss_dssp EEEEEEETTTT--EEEEEE-TTTTEEEEEETTTTEEEEEESS---SEEEEEEECTTSEEEEEETTC--------------
T ss_pred CcceEEECCCC--EEEEEE-cCCCEEEEEECCCCeEEEEecC---CCceEEEEccCCEEEEEEcCc--------------
Confidence 68999999888 999999 5568999999998655443322 399999997679999999765
Q ss_pred ccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC-----Ce--eeeEEEeccCCeEEEeecCceeeEEEeecCCC
Q psy17325 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG-----QL--YEALALDLENGMLYYSTLKCTRWLFWTDWGEN 346 (461)
Q Consensus 274 ~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~-----~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~ 346 (461)
+.+.++.....+++... .. |+++++|+ .|+||+++.. .......
T Consensus 62 ----------------------~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~------~~~~~~~ 112 (246)
T PF08450_consen 62 ----------------------IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSG------GGGASGI 112 (246)
T ss_dssp ----------------------EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEEC------CBCTTCG
T ss_pred ----------------------eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecC------CCccccc
Confidence 33346555555555543 22 99999998 4679999876 0000011
Q ss_pred --CceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCC---eEEEEEccccceeeccCCC
Q psy17325 347 --PRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGR---QQVILIDLMVEFTNDLMGD 421 (461)
Q Consensus 347 --~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~---~~~~~~~~~~~~~~~~~~~ 421 (461)
++|+|.+.+|+ .+.+. ..+..|+||+++++++.||++|+..++|++++++.++. .+.++.+.....
T Consensus 113 ~~g~v~~~~~~~~-~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------- 183 (246)
T PF08450_consen 113 DPGSVYRIDPDGK-VTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP------- 183 (246)
T ss_dssp GSEEEEEEETTSE-EEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-------
T ss_pred cccceEEECCCCe-EEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-------
Confidence 67999999944 44444 67999999999999999999999999999999975555 223333222211
Q ss_pred CCcceEEEeee-CCEEEEEeCCCceee
Q psy17325 422 NGVPALALDLE-NGMLYYSTEGAEFLK 447 (461)
Q Consensus 422 ~~~~~~~l~~~-~~~lYwtd~~~~~i~ 447 (461)
-.|-+++++ +|+||++.+.++.|.
T Consensus 184 --g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 184 --GYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp --CEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred --cCCCcceEcCCCCEEEEEcCCCEEE
Confidence 015566665 689999999887763
No 9
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.1e-12 Score=123.17 Aligned_cols=239 Identities=19% Similarity=0.258 Sum_probs=162.2
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEE
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~ 221 (461)
+...+....||..++...+.|||+|...++|.+.++. |..+.......+ +.++.+|.. | .|..++. .+.+
T Consensus 19 ~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~--~~~~~~d~~-g--~Lv~~~~----g~~~ 89 (307)
T COG3386 19 LLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGF--SSGALIDAG-G--RLIACEH----GVRL 89 (307)
T ss_pred EeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCc--ccceeecCC-C--eEEEEcc----ccEE
Confidence 3455666788999999999999999999999999996 544444333333 777788864 5 6877762 3444
Q ss_pred EecC-CCCcEEEEec----ccccceeEEeeccCCeeEEecCCC---ceeeecccceeeeeccceeeeEEEEEecCCCCcc
Q psy17325 222 IGMD-GSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKL---DFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVP 293 (461)
Q Consensus 222 ~~~d-G~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~---~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~ 293 (461)
.+.+ |..++.+... ....||.+.+|+ .+++|+++... +.-. ..-.
T Consensus 90 ~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~--------------------------~~~~ 142 (307)
T COG3386 90 LDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSE--------------------------ERPT 142 (307)
T ss_pred EeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccc--------------------------cCCc
Confidence 4433 3332333322 456899999997 59999999872 1100 0001
Q ss_pred eeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec---C----CCeEEEeeC
Q psy17325 294 LKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD---G----SNRSTIIST 365 (461)
Q Consensus 294 ~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d---G----~~~~~l~~~ 365 (461)
+.+++++++|...+.+...-. |+||+++|.+..||++|+. ..+|+|..++ | ....+....
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------------~~~i~r~~~d~~~g~~~~~~~~~~~~~ 210 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------------ANRIHRYDLDPATGPIGGRRGFVDFDE 210 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC------------CCeEEEEecCcccCccCCcceEEEccC
Confidence 468888886665555554233 9999999999999999998 7788888776 2 222233323
Q ss_pred CCCCceeEEEecCCCeEE-EEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee---CCEEEEEeC
Q psy17325 366 KIYWPNGLTLDIATRRVY-FADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE---NGMLYYSTE 441 (461)
Q Consensus 366 ~l~~p~glaiD~~~~~ly-~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~lYwtd~ 441 (461)
.-..|.|+++| .++.|| .+-++.+.|.+++. +|.....+.-.... +..+++- .+.||+|-.
T Consensus 211 ~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~p--dG~l~~~i~lP~~~------------~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 211 EPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNP--DGKLLGEIKLPVKR------------PTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCCceEEe-CCCCEEEecccCCceEEEECC--CCcEEEEEECCCCC------------CccceEeCCCcCEEEEEec
Confidence 45789999999 889999 55555569999999 68876655443222 2344443 378999987
Q ss_pred CCc
Q psy17325 442 GAE 444 (461)
Q Consensus 442 ~~~ 444 (461)
..+
T Consensus 276 ~~~ 278 (307)
T COG3386 276 RSG 278 (307)
T ss_pred CCC
Confidence 774
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.57 E-value=8.9e-12 Score=122.73 Aligned_cols=244 Identities=16% Similarity=0.182 Sum_probs=158.5
Q ss_pred CccceeeeeeeecCCeEEEEeC---CCCeEEEEeCCCC--cEEEEe--cCCCCCceeEEEcCCCCceEEEEeecCCCCcE
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDS---RLNRIEVCDENGT--NRIVLA--KDNITQPRGMMLDPSPGTRWLFWTDWGENPRI 219 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~---~~~~I~~~~~~G~--~~~~l~--~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I 219 (461)
....|.-|++++.++.||.++. ..+.|.....+.. ..+.+- ...-..|..|++|+..+ +||++..+ ...|
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~--~l~vany~-~g~v 111 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR--FLYVANYG-GGSV 111 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS--EEEEEETT-TTEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC--EEEEEEcc-CCeE
Confidence 4568999999999999999998 4788877765543 222221 11235799999999988 99999944 4567
Q ss_pred EEEecC--CCCcEE--EEe----------cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEE
Q psy17325 220 ERIGMD--GSNRST--IIS----------TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWI 285 (461)
Q Consensus 220 ~~~~~d--G~~~~~--i~~----------~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~ 285 (461)
....++ |..... ++. ....+|..+.+++.++.||++|...++|.
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~---------------------- 169 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY---------------------- 169 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE----------------------
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE----------------------
Confidence 666665 433222 221 12346889999999999999999987653
Q ss_pred ecCCCCcceeeeEEeCCCCc--eE---EE-EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-C
Q psy17325 286 DEGGNGVPLKIGKANMDGSN--AS---IL-VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-S 357 (461)
Q Consensus 286 d~~~~~~~~~I~~~~~~g~~--~~---~l-~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~ 357 (461)
+.+++... .. .+ +..+. |+.|+++|.++++|++... ++.|...+++. .
T Consensus 170 ------------~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~------------s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 170 ------------VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL------------SNTVSVFDYDPSD 225 (345)
T ss_dssp ------------EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT------------TTEEEEEEEETTT
T ss_pred ------------EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC------------CCcEEEEeecccC
Confidence 33333222 11 11 11222 9999999999999999877 67777777762 2
Q ss_pred -CeEEE--ee------CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCC-CCeEEEEEccccceeeccCCCCCcceE
Q psy17325 358 -NRSTI--IS------TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGT-GRQQVILIDLMVEFTNDLMGDNGVPAL 427 (461)
Q Consensus 358 -~~~~l--~~------~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (461)
..+.+ +. ..-..|.+|++++++++||+++.+.+.|..+++|.. |....+-.-...+. .|..+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~--------~Pr~~ 297 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK--------FPRHF 297 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS--------SEEEE
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC--------CccEE
Confidence 11111 11 112379999999999999999999999999999544 44332211111111 12244
Q ss_pred EEeeeCCEEEEEeCCCceee
Q psy17325 428 ALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 428 ~l~~~~~~lYwtd~~~~~i~ 447 (461)
+++.++.+||+++++++.|.
T Consensus 298 ~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEE
T ss_pred EEeCCCCEEEEEecCCCeEE
Confidence 55558899999999998774
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.53 E-value=1.8e-11 Score=119.93 Aligned_cols=243 Identities=12% Similarity=0.113 Sum_probs=158.9
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCC--CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN--GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD- 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~--G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d- 225 (461)
..|..+++++.++.||++....+.|...+.+ |+....-.......|..|+++|..+ +||.+... ...|...+++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~--~l~v~~~~-~~~v~v~~~~~ 111 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGR--FLFSASYN-ANCVSVSPLDK 111 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCC--EEEEEEcC-CCeEEEEEECC
Confidence 4688899999889999998888889777765 3321111111224799999999977 99999854 4566666664
Q ss_pred -CCCcEEEE-ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC-
Q psy17325 226 -GSNRSTII-STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD- 302 (461)
Q Consensus 226 -G~~~~~i~-~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~- 302 (461)
|...+.+. ......|.++++++.++.||+++...+.| .+.+++
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v----------------------------------~v~d~~~ 157 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRI----------------------------------RLFTLSD 157 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEE----------------------------------EEEEECC
Confidence 43222221 12345799999999999999999887654 334333
Q ss_pred -CCce----E-EEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC--CCeEEEee--------C
Q psy17325 303 -GSNA----S-ILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG--SNRSTIIS--------T 365 (461)
Q Consensus 303 -g~~~----~-~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG--~~~~~l~~--------~ 365 (461)
|... . .-...+. |+.++++|.+++||+++.. .+.|...+++. ...+.+.. .
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~------------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL------------NSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC------------CCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 2111 0 0111122 9999999999999999876 55666666542 11111110 1
Q ss_pred CCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCce
Q psy17325 366 KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEF 445 (461)
Q Consensus 366 ~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~ 445 (461)
.-.+|.+|++++.+++||+++...+.|..++++.++....++.....+. .+..+.+..++.+||++.+++++
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~--------~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET--------QPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc--------cCCceEECCCCCEEEEEEccCCc
Confidence 2236678999999999999999899999999865554433332211111 12356777788999999998887
Q ss_pred eec
Q psy17325 446 LKT 448 (461)
Q Consensus 446 i~~ 448 (461)
|.+
T Consensus 298 v~v 300 (330)
T PRK11028 298 ISV 300 (330)
T ss_pred EEE
Confidence 743
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=1.2e-10 Score=114.83 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=145.2
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCC--CCcEEE--Ee----------cCCCCCceeEEEcCCCCceEEEEee
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN--GTNRIV--LA----------KDNITQPRGMMLDPSPGTRWLFWTD 212 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~--G~~~~~--l~----------~~~~~~p~~ia~d~~~g~~~ly~td 212 (461)
.-..|..+++|+.++.||+++...+.|.+.+++ |..... +. .....+|..+.++|..+ +||++|
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~--~v~v~d 162 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR--FVYVPD 162 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS--EEEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC--EEEEEe
Confidence 335788999999999999999999999888765 444332 22 12346789999999977 999999
Q ss_pred cCCCCcEEEEecCCCC--cEE---EEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEec
Q psy17325 213 WGENPRIERIGMDGSN--RST---IISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDE 287 (461)
Q Consensus 213 ~~~~~~I~~~~~dG~~--~~~---i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~ 287 (461)
.+. .+|...+++... ... +....-..|..|++++.++++|++....+.|.
T Consensus 163 lG~-D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~------------------------ 217 (345)
T PF10282_consen 163 LGA-DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS------------------------ 217 (345)
T ss_dssp TTT-TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE------------------------
T ss_pred cCC-CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE------------------------
Confidence 654 689998887654 221 21223457999999999999999998886543
Q ss_pred CCCCcceeeeEEeCC---CCceE--EEEeC------C-eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec
Q psy17325 288 GGNGVPLKIGKANMD---GSNAS--ILVSG------Q-LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD 355 (461)
Q Consensus 288 ~~~~~~~~I~~~~~~---g~~~~--~l~~~------~-~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d 355 (461)
+.+++ |.... .+-.. . .|.+|+++|.+++||+++.+ ...|...++|
T Consensus 218 ----------v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------------~~sI~vf~~d 275 (345)
T PF10282_consen 218 ----------VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------------SNSISVFDLD 275 (345)
T ss_dssp ----------EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------------TTEEEEEEEC
T ss_pred ----------EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------------CCEEEEEEEe
Confidence 22222 21111 11110 1 28899999999999999888 7788888875
Q ss_pred CC--CeEE--EeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 356 GS--NRST--IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 356 G~--~~~~--l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
.. ..+. .+.....+|.++++|+++++||+++...+.|..++.|.+...
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence 43 2222 233456779999999999999999999999999988644433
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=1.2e-10 Score=114.23 Aligned_cols=237 Identities=15% Similarity=0.195 Sum_probs=147.9
Q ss_pred CeEEEEeCCCCeEEEEeCC--CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe--cc
Q psy17325 161 GHIYWLDSRLNRIEVCDEN--GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS--TK 236 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~--G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~--~~ 236 (461)
..+|+++...+.|.+.+++ |+....-.......|..|+++|... +||++.. ....|...+.++......+. ..
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~--~lyv~~~-~~~~i~~~~~~~~g~l~~~~~~~~ 78 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKR--HLYVGVR-PEFRVLSYRIADDGALTFAAESPL 78 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCC--EEEEEEC-CCCcEEEEEECCCCceEEeeeecC
Confidence 3589999989999999875 4322111112235799999999877 9999874 45677666665332222221 12
Q ss_pred cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC--CCCceEEEE--eC
Q psy17325 237 IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM--DGSNASILV--SG 312 (461)
Q Consensus 237 ~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~--~g~~~~~l~--~~ 312 (461)
...|.+|++++.++.||.+....+. |.+.++ +|...+.+. ..
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~----------------------------------v~v~~~~~~g~~~~~~~~~~~ 124 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANC----------------------------------VSVSPLDKDGIPVAPIQIIEG 124 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCe----------------------------------EEEEEECCCCCCCCceeeccC
Confidence 3479999999999999999876543 333333 343222221 11
Q ss_pred Ce-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe------EEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 313 QL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR------STIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 313 ~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~------~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
.. |++++++|.++.||+++.. .++|...+++.... ..+....-..|.++++++++++||++
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 22 8999999999999998877 66777776653211 11111223569999999999999999
Q ss_pred cCCCCeEEEEEecC-CCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceeec
Q psy17325 386 DSKLDFIDFCNYDG-TGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 386 d~~~~~I~~~~~~g-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
+...+.|..++++. +|.. ..+... ........+...+..+.+++++.+||++++.++.|.+
T Consensus 193 ~~~~~~v~v~~~~~~~~~~-~~~~~~-~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEI-ECVQTL-DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISV 254 (330)
T ss_pred ecCCCEEEEEEEeCCCCCE-EEEEEE-ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEE
Confidence 99999999999952 2332 222111 1111011111111124566778899999988887743
No 14
>KOG4659|consensus
Probab=99.39 E-value=2.3e-11 Score=128.03 Aligned_cols=221 Identities=21% Similarity=0.284 Sum_probs=146.5
Q ss_pred EEEeccccceeecccccCcccccceEEEcC---ccceeeeeeeecCCeEEEEeCCCCeEEEEe-CCCCc----EEEEec-
Q psy17325 118 LIISNRHSILVADLEEKGKDHRAQDIVVSG---LDLVEGLAYDWIGGHIYWLDSRLNRIEVCD-ENGTN----RIVLAK- 188 (461)
Q Consensus 118 l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g---~~~p~~iavd~~~~~ly~~d~~~~~I~~~~-~~G~~----~~~l~~- 188 (461)
|++...+.|+++.-+++- ..++.-+ .++-.-||+|++.+.||++|+...+|.++. +.++. .+++..
T Consensus 378 l~VGDfNyIRRI~~dg~v-----~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~ 452 (1899)
T KOG4659|consen 378 LIVGDFNYIRRISQDGQV-----STILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD 452 (1899)
T ss_pred EEEccchheeeecCCCce-----EEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc
Confidence 455555666666443322 2334333 345567999999999999999999998865 44422 222221
Q ss_pred -------------------CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe---------------
Q psy17325 189 -------------------DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS--------------- 234 (461)
Q Consensus 189 -------------------~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~--------------- 234 (461)
..+..|+|||+|.. | .||++| + ..|.+++.+|--.+.+.+
T Consensus 453 Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~-g--~lYfaD-~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~k 526 (1899)
T KOG4659|consen 453 GEVCLPADESCGDGALAQDAQLIFPKGIAFDKM-G--NLYFAD-G--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITK 526 (1899)
T ss_pred CcCccccccccCcchhcccceeccCCceeEccC-C--cEEEec-c--cEEEEeccCceEEEeccCCCCccCccccccccc
Confidence 13567999999964 6 799999 4 478888887754433222
Q ss_pred ---cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE---
Q psy17325 235 ---TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI--- 308 (461)
Q Consensus 235 ---~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~--- 308 (461)
-.+.||..|||||-.+.||+.|... |.+++.++..+-+
T Consensus 527 l~~~~leWPT~LaV~Pmdnsl~Vld~nv------------------------------------vlrit~~~rV~Ii~Gr 570 (1899)
T KOG4659|consen 527 LVDLQLEWPTSLAVDPMDNSLLVLDTNV------------------------------------VLRITVVHRVRIILGR 570 (1899)
T ss_pred hhheeeecccceeecCCCCeEEEeecce------------------------------------EEEEccCccEEEEcCC
Confidence 2567999999999999999999753 5555555544311
Q ss_pred ----------------EEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEe-------
Q psy17325 309 ----------------LVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII------- 363 (461)
Q Consensus 309 ----------------l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~------- 363 (461)
.....+ +++||+.+ .|.||++++. -..-++|.+..-||+ ...|.
T Consensus 571 P~hC~~a~~t~~~skla~H~tl~~~r~Iavg~-~G~lyvaEsD---------~rriNrvr~~~tdg~-i~ilaGa~S~C~ 639 (1899)
T KOG4659|consen 571 PTHCDLANATSSASKLADHRTLLIQRDIAVGT-DGALYVAESD---------GRRINRVRKLSTDGT-ISILAGAKSPCS 639 (1899)
T ss_pred ccccccCCCchhhhhhhhhhhhhhhhceeecC-CceEEEEecc---------chhhhheEEeccCce-EEEecCCCCCCC
Confidence 111111 88999995 7899999876 111233444444552 12221
Q ss_pred ------------------eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 364 ------------------STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 364 ------------------~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
...+..|.+|||. .++.||++|.++-+|..+..
T Consensus 640 C~~~~~cdcfs~~~~~At~A~lnsp~alaVs-Pdg~v~IAD~gN~rIr~Vs~ 690 (1899)
T KOG4659|consen 640 CDVAACCDCFSLRDVAATQAKLNSPYALAVS-PDGDVIIADSGNSRIRKVSA 690 (1899)
T ss_pred cccccCCccccccchhhhccccCCcceEEEC-CCCcEEEecCCchhhhhhhh
Confidence 2358889999998 67999999999988887554
No 15
>KOG4659|consensus
Probab=99.38 E-value=5.1e-11 Score=125.54 Aligned_cols=242 Identities=18% Similarity=0.224 Sum_probs=159.3
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec--CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEe-c
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK--DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIG-M 224 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~--~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~-~ 224 (461)
|-.|..+|+. ..|.||+-|. +-|.++..+|...++|-- ....+-.-||++|..| .||++| ....+|+|++ +
T Consensus 364 L~aPvala~a-~DGSl~VGDf--NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg--tlyvSd-p~s~qv~rv~sl 437 (1899)
T KOG4659|consen 364 LFAPVALAYA-PDGSLIVGDF--NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG--TLYVSD-PLSKQVWRVSSL 437 (1899)
T ss_pred eeceeeEEEc-CCCcEEEccc--hheeeecCCCceEEEEEecCCCccceeEEEecCcCc--eEEecC-CCcceEEEeccC
Confidence 3357778886 4789999887 689999999998766532 2334456799999999 999999 5567888865 3
Q ss_pred CCCC----cEEEEe--------------------cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeee
Q psy17325 225 DGSN----RSTIIS--------------------TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFR 280 (461)
Q Consensus 225 dG~~----~~~i~~--------------------~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~ 280 (461)
.++. .+++.. ..+..|.||||| ..+.|||+|...
T Consensus 438 ~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t~--------------------- 495 (1899)
T KOG4659|consen 438 EPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGTR--------------------- 495 (1899)
T ss_pred CccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEc-cCCcEEEecccE---------------------
Confidence 3321 122222 146689999999 589999999865
Q ss_pred EEEEEecCCCCcceeeeEEeCCCCceEEE------------------EeCCe--eeeEEEeccCCeEEEeecCceeeEEE
Q psy17325 281 KLYWIDEGGNGVPLKIGKANMDGSNASIL------------------VSGQL--YEALALDLENGMLYYSTLKCTRWLFW 340 (461)
Q Consensus 281 ~~yw~d~~~~~~~~~I~~~~~~g~~~~~l------------------~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~ 340 (461)
|.+++.+|-...++ .+-.+ |..+||||..+.||+-|..
T Consensus 496 ---------------IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n------- 553 (1899)
T KOG4659|consen 496 ---------------IRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN------- 553 (1899)
T ss_pred ---------------EEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc-------
Confidence 33333333222221 11122 9999999999999998765
Q ss_pred eecCCCCceEEEeecCCCeEEEe-------------------eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCC
Q psy17325 341 TDWGENPRIERIGMDGSNRSTII-------------------STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTG 401 (461)
Q Consensus 341 ~d~~~~~~I~~~~~dG~~~~~l~-------------------~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g 401 (461)
.|.|+..++.-+..+. ...+.-|..||+. ..|.||++++...+|.++..-++.
T Consensus 554 -------vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~~G~lyvaEsD~rriNrvr~~~td 625 (1899)
T KOG4659|consen 554 -------VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-TDGALYVAESDGRRINRVRKLSTD 625 (1899)
T ss_pred -------eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-CCceEEEEeccchhhhheEEeccC
Confidence 6777766665442211 1234567899997 779999999988777776653222
Q ss_pred CeEEEEEccccceeecc--------CCC-------CCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 402 RQQVILIDLMVEFTNDL--------MGD-------NGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
.. ..++.+.+...... .+. .+..|.+|++. +|.||++|.++-+||.
T Consensus 626 g~-i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~ 687 (1899)
T KOG4659|consen 626 GT-ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRK 687 (1899)
T ss_pred ce-EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhh
Confidence 22 33333332221111 111 14457777775 5899999999999964
No 16
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=3.6e-10 Score=112.61 Aligned_cols=238 Identities=17% Similarity=0.198 Sum_probs=160.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
.|.+++++..+..+|+++...+.+..++.. ... +.........|.++++.+... ++|.+. .....|..+++....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~--~vyv~~-~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGN--KVYVTT-GDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCC--eEEEec-CCCCeEEEEcCcccc
Confidence 689999999899999999888888777766 333 332333336799999999988 999998 556788888855433
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
....+..+. .|.++++|+.++.+|+++..... ++|.+.+........
T Consensus 108 ~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~--------------------------------~~vsvid~~t~~~~~ 154 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGN--------------------------------NTVSVIDAATNKVTA 154 (381)
T ss_pred eeeEeeecc-CCceEEECCCCCEEEEEecccCC--------------------------------ceEEEEeCCCCeEEE
Confidence 322222222 89999999999999999995300 245555544333222
Q ss_pred EEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEE-E---eeCCCCCceeEEEecCCCeEE
Q psy17325 309 LVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRST-I---ISTKIYWPNGLTLDIATRRVY 383 (461)
Q Consensus 309 l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~-l---~~~~l~~p~glaiD~~~~~ly 383 (461)
....+. |.+++++|.+.++|+++.. .+.|...+..+..... - .......|.++++++++.++|
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSD------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecC------------CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEE
Confidence 233233 9999999999999999966 4555555544443331 0 125567899999999999999
Q ss_pred EEcCCC--CeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 384 FADSKL--DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 384 ~~d~~~--~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
+++... +.+..++.. ++............ . +...++++.+..+|+++...+.+
T Consensus 223 V~~~~~~~~~v~~id~~-~~~v~~~~~~~~~~-~--------~~~v~~~p~g~~~yv~~~~~~~V 277 (381)
T COG3391 223 VANDGSGSNNVLKIDTA-TGNVTATDLPVGSG-A--------PRGVAVDPAGKAAYVANSQGGTV 277 (381)
T ss_pred EEeccCCCceEEEEeCC-CceEEEeccccccC-C--------CCceeECCCCCEEEEEecCCCeE
Confidence 999988 689999982 33322211111111 1 23456667777888876665444
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.36 E-value=4.4e-10 Score=111.54 Aligned_cols=272 Identities=15% Similarity=0.159 Sum_probs=156.7
Q ss_pred CccceeeeeeeecCCeEEEEeCC-----------C-CeEEEEeC---CCCc-EEEEecCCCCCceeEEEcCCCCceEEEE
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSR-----------L-NRIEVCDE---NGTN-RIVLAKDNITQPRGMMLDPSPGTRWLFW 210 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~-----------~-~~I~~~~~---~G~~-~~~l~~~~~~~p~~ia~d~~~g~~~ly~ 210 (461)
.+..|.+|++|. .++||+++.. . ++|.+... +|.. ...++...+..|.||++.+. | ||+
T Consensus 12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~-G---lyV 86 (367)
T TIGR02604 12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG-G---VYV 86 (367)
T ss_pred ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC-C---EEE
Confidence 378999999996 6889999842 2 38877753 4554 34566677888999999863 3 999
Q ss_pred eecCCCCcEEEE-ecCCC-----CcEEEEec---c----cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccce
Q psy17325 211 TDWGENPRIERI-GMDGS-----NRSTIIST---K----IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYST 277 (461)
Q Consensus 211 td~~~~~~I~~~-~~dG~-----~~~~i~~~---~----~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~ 277 (461)
++ .+.|.+. +.+|. .+++++.. . ...|++|++++ .++||+++.....-....
T Consensus 87 ~~---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~----------- 151 (367)
T TIGR02604 87 AT---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTR----------- 151 (367)
T ss_pred eC---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceecc-----------
Confidence 87 3468877 44442 33445442 1 23488999997 579999887532100000
Q ss_pred eeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCcee--eEEEeecCCC-------C
Q psy17325 278 IFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTR--WLFWTDWGEN-------P 347 (461)
Q Consensus 278 ~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~--~l~~~d~~~~-------~ 347 (461)
.-..+.......+.|.+.+++|+..+++..... |.||++|+ .|.||++|..... .++....+.+ +
T Consensus 152 ----~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~ 226 (367)
T TIGR02604 152 ----PGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNG 226 (367)
T ss_pred ----CCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCC
Confidence 000000000111579999999998887765433 99999998 6889998875111 1111100000 0
Q ss_pred -ceEEEe------e---------cCCCeEEEeeCCCCCceeEEEe-------cCCCeEEEEcCCCCeEEEEEecCCCCeE
Q psy17325 348 -RIERIG------M---------DGSNRSTIISTKIYWPNGLTLD-------IATRRVYFADSKLDFIDFCNYDGTGRQQ 404 (461)
Q Consensus 348 -~I~~~~------~---------dG~~~~~l~~~~l~~p~glaiD-------~~~~~ly~~d~~~~~I~~~~~~g~g~~~ 404 (461)
...... . .+.............|.|+++- ...+.|++++...++|.++.++.+|...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~ 306 (367)
T TIGR02604 227 RRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGF 306 (367)
T ss_pred cccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCcc
Confidence 000000 0 0000001111122368999995 3468999999999999999996555432
Q ss_pred EEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 405 VILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
.. +....+.. ......|.++++. +|.||++||....|..
T Consensus 307 ~~--~~~~~l~~---~~~~~rp~dv~~~pDG~Lyv~d~~~~~i~~ 346 (367)
T TIGR02604 307 KG--ERPEFLRS---NDTWFRPVNVTVGPDGALYVSDWYDRGIEH 346 (367)
T ss_pred Ee--ecCceEec---CCCcccccceeECCCCCEEEEEeccCcccc
Confidence 21 10111110 0011235666664 5789999977766643
No 18
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.2e-09 Score=108.88 Aligned_cols=200 Identities=18% Similarity=0.255 Sum_probs=148.8
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecC
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMD 225 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~d 225 (461)
+...|.++++...+.++|+++...+.|.+++.........+.-+ ..|.++++++..+ ++|+++.+ .+..+..++..
T Consensus 72 g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 72 GGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred CCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCC--EEEEEecccCCceEEEEeCC
Confidence 44678999999999999999999999999996655543333323 2799999999988 99999954 35788887777
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.......+..+ ..|.++++|+.+.++|.++...+. |...+..+..
T Consensus 149 t~~~~~~~~vG-~~P~~~a~~p~g~~vyv~~~~~~~----------------------------------v~vi~~~~~~ 193 (381)
T COG3391 149 TNKVTATIPVG-NTPTGVAVDPDGNKVYVTNSDDNT----------------------------------VSVIDTSGNS 193 (381)
T ss_pred CCeEEEEEecC-CCcceEEECCCCCeEEEEecCCCe----------------------------------EEEEeCCCcc
Confidence 54433223222 268999999999999999966643 4555544443
Q ss_pred eEE------EEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCC--CceEEEeecCCCeEEE--eeCCCCCceeEEE
Q psy17325 306 ASI------LVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGEN--PRIERIGMDGSNRSTI--ISTKIYWPNGLTL 375 (461)
Q Consensus 306 ~~~------l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~--~~I~~~~~dG~~~~~l--~~~~l~~p~glai 375 (461)
... +.....|.++++++.+.++|+++.. + ..+.+.+......... ....+ +|.++++
T Consensus 194 v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~------------~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~ 260 (381)
T COG3391 194 VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG------------SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAV 260 (381)
T ss_pred eeccccccccccCCCCceEEECCCCCEEEEEecc------------CCCceEEEEeCCCceEEEeccccccC-CCCceeE
Confidence 332 1111229999999999999999876 3 5677766655544443 22455 8999999
Q ss_pred ecCCCeEEEEcCCCCeEEEEEe
Q psy17325 376 DIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 376 D~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++.+..+|+++...+.+..++.
T Consensus 261 ~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 261 DPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred CCCCCEEEEEecCCCeEEEEeC
Confidence 9999999999999999999998
No 19
>KOG1520|consensus
Probab=99.25 E-value=1.4e-10 Score=110.26 Aligned_cols=140 Identities=21% Similarity=0.320 Sum_probs=113.9
Q ss_pred ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-
Q psy17325 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL- 314 (461)
Q Consensus 236 ~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~- 314 (461)
..++|.||+++..++.||++|+..+ ++.+.+.|+..+.+.....
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYlG-----------------------------------L~~V~p~g~~a~~l~~~~~G 157 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYLG-----------------------------------LLKVGPEGGLAELLADEAEG 157 (376)
T ss_pred ccCCcceEEeccCCCeEEEEeccee-----------------------------------eEEECCCCCcceeccccccC
Confidence 3579999999999999999999874 6778888887665554332
Q ss_pred -----eeeEEEeccCCeEEEeecCc----eeeEEEeecC-CCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 315 -----YEALALDLENGMLYYSTLKC----TRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 315 -----p~~iavd~~~~~lY~t~~~~----~~~l~~~d~~-~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
.+++.||+ +|.+||||+.. ..++|-.=.+ .++|+.|.+..-+..++|+ .+|..|+||++.+++..+.+
T Consensus 158 ~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~ 235 (376)
T KOG1520|consen 158 KPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLV 235 (376)
T ss_pred eeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEE
Confidence 78999998 99999999884 3466655445 5789999999988888888 99999999999999999999
Q ss_pred EcCCCCeEEEEEecCCCCeE---EEEEccccce
Q psy17325 385 ADSKLDFIDFCNYDGTGRQQ---VILIDLMVEF 414 (461)
Q Consensus 385 ~d~~~~~I~~~~~~g~g~~~---~~~~~~~~~~ 414 (461)
++....+|.+..+ .|... .++.++.++.
T Consensus 236 ~Et~~~ri~rywi--~g~k~gt~EvFa~~LPG~ 266 (376)
T KOG1520|consen 236 AETTTARIKRYWI--KGPKAGTSEVFAEGLPGY 266 (376)
T ss_pred EeeccceeeeeEe--cCCccCchhhHhhcCCCC
Confidence 9999999999999 56554 4455545544
No 20
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2.6e-08 Score=93.43 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=163.8
Q ss_pred CccceeeeeeeecCCeEEEEeCC--CCeEEEEeCCCC-cEEEEecC---CCCCceeEEEcCCCCceEEEEeecCCCCcEE
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSR--LNRIEVCDENGT-NRIVLAKD---NITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~--~~~I~~~~~~G~-~~~~l~~~---~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~ 220 (461)
.+..|.-|+++...+.||..... .+.|.....|.. -+..++.. .-..|.-+++|+.+. +||.+..+. ..|.
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~--~vf~AnY~~-g~v~ 114 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGR--FVFVANYHS-GSVS 114 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCC--EEEEEEccC-ceEE
Confidence 45689999999999999999877 777876665543 22233321 223468999999977 999998543 4554
Q ss_pred EE--ecCCCCcEEE---Eeccc--------ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEec
Q psy17325 221 RI--GMDGSNRSTI---ISTKI--------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDE 287 (461)
Q Consensus 221 ~~--~~dG~~~~~i---~~~~~--------~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~ 287 (461)
+. .-+|.-...+ ...+- .++...-+++.++.|+..|.+.++|.
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~------------------------ 170 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF------------------------ 170 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE------------------------
Confidence 44 4456654332 11111 12556677888999999999998753
Q ss_pred CCCCcceeeeEEeCCCCce---EEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC--CeEE
Q psy17325 288 GGNGVPLKIGKANMDGSNA---SILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS--NRST 361 (461)
Q Consensus 288 ~~~~~~~~I~~~~~~g~~~---~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~--~~~~ 361 (461)
+++.. +|... ...+..+. |+-|++.|..+..|+...- ++.|.....++. ..+.
T Consensus 171 --------~y~~~-dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL------------~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 171 --------LYDLD-DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL------------NSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred --------EEEcc-cCccccccccccCCCCCcceEEEcCCCcEEEEEecc------------CCEEEEEEEcCCCceEEE
Confidence 33333 33321 11122233 9999999999999998776 666766666653 1111
Q ss_pred ---Ee-----eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEE-ccccceeeccCCCCCcceEEEeee
Q psy17325 362 ---II-----STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILI-DLMVEFTNDLMGDNGVPALALDLE 432 (461)
Q Consensus 362 ---l~-----~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 432 (461)
+. .++-.+...|.|.+++..||.++.+.+.|..+.+|.+|.....+. ....+. +|..|.|+..
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~--------~PR~F~i~~~ 301 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ--------FPRDFNINPS 301 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc--------CCccceeCCC
Confidence 21 134556778999999999999999999999999987776543332 222222 1346778888
Q ss_pred CCEEEEEeCCCceee
Q psy17325 433 NGMLYYSTEGAEFLK 447 (461)
Q Consensus 433 ~~~lYwtd~~~~~i~ 447 (461)
++.|+.+.+++..|.
T Consensus 302 g~~Liaa~q~sd~i~ 316 (346)
T COG2706 302 GRFLIAANQKSDNIT 316 (346)
T ss_pred CCEEEEEccCCCcEE
Confidence 999999999998763
No 21
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.21 E-value=9.3e-09 Score=95.07 Aligned_cols=195 Identities=17% Similarity=0.227 Sum_probs=118.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC--C
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG--S 227 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG--~ 227 (461)
.+.||++++.++.||.+......|...+++|...+.+--.++..|.||++-.. + .+..++ ....++..+..+. .
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~-~--~~vl~~-Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGN-G--RYVLSE-ERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-ST-T--EEEEEE-TTTTEEEEEEE----T
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECC-C--EEEEEE-cCCCcEEEEEEecccc
Confidence 48999999999999999999999999999999877765566788999999643 4 455555 3456788777732 2
Q ss_pred Cc--EEE--Eec-----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeE
Q psy17325 228 NR--STI--IST-----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 228 ~~--~~i--~~~-----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~ 298 (461)
.. ..+ +.- +-....|||.|+.+++||++..... ..|+.
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P---------------------------------~~l~~ 145 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP---------------------------------KRLYE 145 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS---------------------------------EEEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC---------------------------------hhhEE
Confidence 21 111 111 1123589999999999999865542 12344
Q ss_pred EeC--CCCceEEEEeC-----Ce----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee---
Q psy17325 299 ANM--DGSNASILVSG-----QL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS--- 364 (461)
Q Consensus 299 ~~~--~g~~~~~l~~~-----~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~--- 364 (461)
.+. .+....+.... .. |.++++||..+.||+-... +.+|...+.+|.-...+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e------------s~~l~~~d~~G~~~~~~~L~~g 213 (248)
T PF06977_consen 146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE------------SRLLLELDRQGRVVSSLSLDRG 213 (248)
T ss_dssp EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT------------TTEEEEE-TT--EEEEEE-STT
T ss_pred EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC------------CCeEEEECCCCCEEEEEEeCCc
Confidence 433 22222221111 11 9999999999999998766 7888888888876554431
Q ss_pred -----CCCCCceeEEEecCCCeEEEEcCCCCeEEEE
Q psy17325 365 -----TKIYWPNGLTLDIATRRVYFADSKLDFIDFC 395 (461)
Q Consensus 365 -----~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~ 395 (461)
..+.+|-|||+| .+|+||++..- +..+++
T Consensus 214 ~~gl~~~~~QpEGIa~d-~~G~LYIvsEp-Nlfy~f 247 (248)
T PF06977_consen 214 FHGLSKDIPQPEGIAFD-PDGNLYIVSEP-NLFYRF 247 (248)
T ss_dssp GGG-SS---SEEEEEE--TT--EEEEETT-TEEEEE
T ss_pred ccCcccccCCccEEEEC-CCCCEEEEcCC-ceEEEe
Confidence 347799999999 67999998653 455554
No 22
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.16 E-value=1.8e-08 Score=98.47 Aligned_cols=263 Identities=19% Similarity=0.201 Sum_probs=149.8
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec------CCCCCceeEEEcCC---CCceEEEEeecC----
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK------DNITQPRGMMLDPS---PGTRWLFWTDWG---- 214 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~------~~~~~p~~ia~d~~---~g~~~ly~td~~---- 214 (461)
|..|.+|++.+. +.+|+++. .++|.+.+.+|.....+.. .....+.|||+||. ++ +||++-..
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~--~lYv~~t~~~~~ 76 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNG--YLYVYYTNADED 76 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC---EEEEEEEEE-TS
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCC--EEEEEEEcccCC
Confidence 467999999975 89999999 8999999988876333211 23345789999994 46 77776521
Q ss_pred ---CCCcEEEEecCCC-----CcEEEEec------ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeee
Q psy17325 215 ---ENPRIERIGMDGS-----NRSTIIST------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFR 280 (461)
Q Consensus 215 ---~~~~I~~~~~dG~-----~~~~i~~~------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~ 280 (461)
...+|.|..++.. ..++|+.. ....-.+|++++ .++||++-.....-...
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~--------------- 140 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNA--------------- 140 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGG---------------
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccc---------------
Confidence 1157888888755 12334322 234456799998 55999986544220000
Q ss_pred EEEEEecCCCCcceeeeEEeCCCC-------------ceEEEEeCCe--eeeEEEeccCCeEEEeecCce--eeEEEeec
Q psy17325 281 KLYWIDEGGNGVPLKIGKANMDGS-------------NASILVSGQL--YEALALDLENGMLYYSTLKCT--RWLFWTDW 343 (461)
Q Consensus 281 ~~yw~d~~~~~~~~~I~~~~~~g~-------------~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~--~~l~~~d~ 343 (461)
+......++|.|++++|+ ..++. ..++ |.++++||..|.||.+|.+.. ..|.+...
T Consensus 141 ------~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~-A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~ 213 (331)
T PF07995_consen 141 ------QDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIY-AYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEP 213 (331)
T ss_dssp ------CSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEE-EE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T
T ss_pred ------cccccccceEEEecccCcCCCCCccccCCCceEEEE-EeCCCccccEEEECCCCcEEEEccCCCCCcEEEEecc
Confidence 000011257999999987 34444 4455 999999999899999987621 23333332
Q ss_pred CCC---CceE-----------EEe-ecCCCeEEEeeCCCCCceeEEEe------cCCCeEEEEcCCCCeEEEEEecCCCC
Q psy17325 344 GEN---PRIE-----------RIG-MDGSNRSTIISTKIYWPNGLTLD------IATRRVYFADSKLDFIDFCNYDGTGR 402 (461)
Q Consensus 344 ~~~---~~I~-----------~~~-~dG~~~~~l~~~~l~~p~glaiD------~~~~~ly~~d~~~~~I~~~~~~g~g~ 402 (461)
|.+ +..+ ... ..+...-++....-..|.|+++= ...+.+++++...++|.++.++.++.
T Consensus 214 G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~ 293 (331)
T PF07995_consen 214 GGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS 293 (331)
T ss_dssp T-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE
T ss_pred CCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC
Confidence 211 0010 000 01111111222334578999983 13678999999999999999953333
Q ss_pred eEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCcee
Q psy17325 403 QQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFL 446 (461)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i 446 (461)
. .......... ...+.+|+.. +|.||+++..++.|
T Consensus 294 ~-~~~~~~~~~~--------~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 294 V-TEEEEFLGGF--------GGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp E-EEEEEECTTS--------SS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred c-cceEEccccC--------CCCceEEEEcCCCeEEEEECCCCeE
Confidence 1 1111111111 1135677764 58999998877655
No 23
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=9.7e-09 Score=98.22 Aligned_cols=160 Identities=21% Similarity=0.363 Sum_probs=112.4
Q ss_pred CCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce
Q psy17325 190 NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI 269 (461)
Q Consensus 190 ~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~ 269 (461)
......|.+.++..+ .|||+|+ ..++|.+.+......+++... -..++++.+| ..++|..++...
T Consensus 23 ~~~~gEgP~w~~~~~--~L~w~DI-~~~~i~r~~~~~g~~~~~~~p-~~~~~~~~~d-~~g~Lv~~~~g~---------- 87 (307)
T COG3386 23 GATLGEGPVWDPDRG--ALLWVDI-LGGRIHRLDPETGKKRVFPSP-GGFSSGALID-AGGRLIACEHGV---------- 87 (307)
T ss_pred ccccccCccCcCCCC--EEEEEeC-CCCeEEEecCCcCceEEEECC-CCcccceeec-CCCeEEEEcccc----------
Confidence 334577888999988 9999995 457999999974333334333 3348888888 477777777654
Q ss_pred eeeeccceeeeEEEEEecCCCCcceeeeEEeCC-CCceEEEEeCC--e----eeeEEEeccCCeEEEeecCceeeEEEe-
Q psy17325 270 KTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD-GSNASILVSGQ--L----YEALALDLENGMLYYSTLKCTRWLFWT- 341 (461)
Q Consensus 270 ~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~-g~~~~~l~~~~--~----p~~iavd~~~~~lY~t~~~~~~~l~~~- 341 (461)
.+..++ |..++.+.... . |+...+||. |.+|+++.. + ++
T Consensus 88 ---------------------------~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~---~--~~~ 134 (307)
T COG3386 88 ---------------------------RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMG---Y--FDL 134 (307)
T ss_pred ---------------------------EEEeccCCceeEEeccccCCCCcCCCCceeEcCC-CCEEEeCCC---c--ccc
Confidence 222222 33323333221 1 999999985 778888766 1 22
Q ss_pred ---ecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 342 ---DWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 342 ---d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
+-...++++|++.+|+..+.+. ..+..||||+++++++.||++|+..++|++++++
T Consensus 135 ~~~~~~~~G~lyr~~p~g~~~~l~~-~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 135 GKSEERPTGSLYRVDPDGGVVRLLD-DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CccccCCcceEEEEcCCCCEEEeec-CcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 1113467999998766555544 6699999999999999999999999999999995
No 24
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.10 E-value=6.5e-07 Score=85.67 Aligned_cols=236 Identities=14% Similarity=0.110 Sum_probs=140.3
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
..|.++++++.++.+|.+....+.|.+.+..+......+... ..|..++++|..+ .+|.+. .....|...++....
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~--~l~~~~-~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFALHPNGK--ILYIAN-EDDNLVTVIDIETRK 106 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEEECCCCC--EEEEEc-CCCCeEEEEECCCCe
Confidence 346778888877789999888899999997754433323222 4478899999877 888876 344678888887532
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce-E
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA-S 307 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~-~ 307 (461)
....+.. -..|.++++++.+..++.+...... +...+...... .
T Consensus 107 ~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~----------------------------------~~~~d~~~~~~~~ 151 (300)
T TIGR03866 107 VLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM----------------------------------AHFIDTKTYEIVD 151 (300)
T ss_pred EEeEeeC-CCCcceEEECCCCCEEEEEecCCCe----------------------------------EEEEeCCCCeEEE
Confidence 2111221 2358899999877776666543321 22222222111 1
Q ss_pred EEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-eEEEe------eCCCCCceeEEEecCCC
Q psy17325 308 ILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-RSTII------STKIYWPNGLTLDIATR 380 (461)
Q Consensus 308 ~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-~~~l~------~~~l~~p~glaiD~~~~ 380 (461)
.+.....|..+++++.+..||++... .+.|...++.... ...+- ...-..|.++++++.+.
T Consensus 152 ~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 152 NVLVDQRPRFAEFTADGKELWVSSEI------------GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred EEEcCCCccEEEECCCCCEEEEEcCC------------CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 12211228889999888888876443 2233333332211 11110 01223588999998888
Q ss_pred eEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 381 RVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 381 ~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
.+|++....++|..+++. ++.....+... .. +..++++..+.+||.+...++.|+
T Consensus 220 ~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~-~~----------~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 220 TAFVALGPANRVAVVDAK-TYEVLDYLLVG-QR----------VWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred EEEEEcCCCCeEEEEECC-CCcEEEEEEeC-CC----------cceEEECCCCCEEEEEcCCCCeEE
Confidence 899987777889999883 45443322211 11 123455557778888876666553
No 25
>KOG1520|consensus
Probab=99.10 E-value=1.5e-08 Score=96.61 Aligned_cols=198 Identities=17% Similarity=0.242 Sum_probs=136.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCC-cEEEEe-------cCCCCCceeEEEcCCCCceEEEEeecCCCCcEEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGT-NRIVLA-------KDNITQPRGMMLDPSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~-~~~~l~-------~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~ 221 (461)
.|+-+++. .++.++|+-...+.+..++..-+ .+...- ..--.+|-||+++..+| .||++| +.-.++.
T Consensus 66 ~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~gg--dL~VaD--AYlGL~~ 140 (376)
T KOG1520|consen 66 GGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGG--DLYVAD--AYLGLLK 140 (376)
T ss_pred CCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCC--eEEEEe--cceeeEE
Confidence 34444443 35667888777777766654211 111110 01125799999999998 999999 4468999
Q ss_pred EecCCCCcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeE-EEEE-ecCCCCccee
Q psy17325 222 IGMDGSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRK-LYWI-DEGGNGVPLK 295 (461)
Q Consensus 222 ~~~dG~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~-~yw~-d~~~~~~~~~ 295 (461)
++..|...+.+... .+.-.++|.||. ++.|||+|+....-. |. ++=. ..... ++
T Consensus 141 V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~----------------rd~~~a~l~g~~~---GR 200 (376)
T KOG1520|consen 141 VGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDR----------------RDFVFAALEGDPT---GR 200 (376)
T ss_pred ECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccch----------------hheEEeeecCCCc---cc
Confidence 99998876555443 345578999998 999999998763210 11 1111 11111 46
Q ss_pred eeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe---EEEeeCCCCCce
Q psy17325 296 IGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR---STIISTKIYWPN 371 (461)
Q Consensus 296 I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~---~~l~~~~l~~p~ 371 (461)
+.+.++..+..+++.+.-. |+|+++.|.+..+-+++.. ..+|.|..+.|... ++++..--+.|.
T Consensus 201 l~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~------------~~ri~rywi~g~k~gt~EvFa~~LPG~PD 268 (376)
T KOG1520|consen 201 LFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT------------TARIKRYWIKGPKAGTSEVFAEGLPGYPD 268 (376)
T ss_pred eEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec------------cceeeeeEecCCccCchhhHhhcCCCCCc
Confidence 7777777777777776544 9999999999999999988 88999999998876 777733556899
Q ss_pred eEEEecCCCeEEEE
Q psy17325 372 GLTLDIATRRVYFA 385 (461)
Q Consensus 372 glaiD~~~~~ly~~ 385 (461)
-|..| .+|..+++
T Consensus 269 NIR~~-~~G~fWVa 281 (376)
T KOG1520|consen 269 NIRRD-STGHFWVA 281 (376)
T ss_pred ceeEC-CCCCEEEE
Confidence 99998 67776665
No 26
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=99.09 E-value=2.2e-10 Score=75.03 Aligned_cols=41 Identities=46% Similarity=1.007 Sum_probs=37.5
Q ss_pred eEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEec
Q psy17325 337 WLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 377 (461)
Q Consensus 337 ~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~ 377 (461)
.|||+|++..++|++++|||+++++++..++.+|.|||||+
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 67888888777999999999999999999999999999984
No 27
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.08 E-value=7.3e-08 Score=89.14 Aligned_cols=202 Identities=17% Similarity=0.209 Sum_probs=117.0
Q ss_pred CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccc
Q psy17325 189 DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLE 268 (461)
Q Consensus 189 ~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~ 268 (461)
+-..++.||+++|..+ .||... ...+.|+..+++|...+.+-..+..-|.||++- .++++.+++.....+
T Consensus 19 g~~~e~SGLTy~pd~~--tLfaV~-d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L------ 88 (248)
T PF06977_consen 19 GILDELSGLTYNPDTG--TLFAVQ-DEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRL------ 88 (248)
T ss_dssp T--S-EEEEEEETTTT--EEEEEE-TTTTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEE------
T ss_pred CccCCccccEEcCCCC--eEEEEE-CCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcE------
Confidence 3345699999999988 898776 667899999999987777766678889999995 456666677655443
Q ss_pred eeeeeccceeeeEEEEEecCCCCcceeeeEEeC--CCCce--E---EE---Ee--CCe-eeeEEEeccCCeEEEeecCce
Q psy17325 269 IKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM--DGSNA--S---IL---VS--GQL-YEALALDLENGMLYYSTLKCT 335 (461)
Q Consensus 269 ~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~--~g~~~--~---~l---~~--~~~-p~~iavd~~~~~lY~t~~~~~ 335 (461)
....+ +++.. . .+ +. .+. .+||+.|+.++.||++...
T Consensus 89 ----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-- 138 (248)
T PF06977_consen 89 ----------------------------YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-- 138 (248)
T ss_dssp ----------------------------EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--
T ss_pred ----------------------------EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--
Confidence 22222 11111 1 01 11 111 7899999999999988654
Q ss_pred eeEEEeecCCCC-ceEEEee--cCCCeEEEe-------eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEE
Q psy17325 336 RWLFWTDWGENP-RIERIGM--DGSNRSTII-------STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 336 ~~l~~~d~~~~~-~I~~~~~--dG~~~~~l~-------~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~ 405 (461)
.+ +|+..+. .+....+.. ...+..|.+|++|+.+++||+......+|..++. +|....
T Consensus 139 ----------~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~--~G~~~~ 206 (248)
T PF06977_consen 139 ----------KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR--QGRVVS 206 (248)
T ss_dssp ----------SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T--T--EEE
T ss_pred ----------CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC--CCCEEE
Confidence 33 3555554 222222221 1246679999999999999999999999999998 787644
Q ss_pred EEEc--cccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceee
Q psy17325 406 ILID--LMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLK 447 (461)
Q Consensus 406 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~ 447 (461)
.+.- +..++. ..+++|-+|+++ +|.||++.+-+-..+
T Consensus 207 ~~~L~~g~~gl~-----~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 207 SLSLDRGFHGLS-----KDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp EEE-STTGGG-S-----S---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred EEEeCCcccCcc-----cccCCccEEEECCCCCEEEEcCCceEEE
Confidence 3322 222222 123456666665 589999998775444
No 28
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=4.7e-07 Score=87.89 Aligned_cols=251 Identities=15% Similarity=0.172 Sum_probs=142.7
Q ss_pred cCCeEEEEeCC----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC--------CCCcEEEEecCC
Q psy17325 159 IGGHIYWLDSR----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG--------ENPRIERIGMDG 226 (461)
Q Consensus 159 ~~~~ly~~d~~----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~--------~~~~I~~~~~dG 226 (461)
...++|++|.. .++|.++|.+.....-.+..+ ..|+++ +.|..+ .||++... ....|..++...
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~--~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGS--FFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCC--EEEEEeccccccccCCCCCEEEEEECcc
Confidence 36789999988 489999998776554444444 469997 999877 99999831 346777777664
Q ss_pred CCc-EEEEe-c-----ccccceeEEeeccCCeeEEecCC-Cceeeecccceeeeecccee--eeEEEEEecCCCCcceee
Q psy17325 227 SNR-STIIS-T-----KIYWPNGLTLDIATRRVYFADSK-LDFIDCKSLEIKTNVNYSTI--FRKLYWIDEGGNGVPLKI 296 (461)
Q Consensus 227 ~~~-~~i~~-~-----~~~~P~glavD~~~~~ly~~d~~-~~~i~~~~~~~~~~v~~~~~--~~~~yw~d~~~~~~~~~I 296 (461)
... ..|.. . ....|..+++.+.++.||+++.. ...+..++...++-+....+ ...+|-+.....
T Consensus 87 ~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~------ 160 (352)
T TIGR02658 87 HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTF------ 160 (352)
T ss_pred CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCcc------
Confidence 332 22221 1 13356699999999999999866 66676666655444321111 123333322221
Q ss_pred eEEeCCCCceEE--------------EEeC---Ce-eeeEEEec-cCCeEEEeecCceeeEEEeecCCCCceEEEeecCC
Q psy17325 297 GKANMDGSNASI--------------LVSG---QL-YEALALDL-ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS 357 (461)
Q Consensus 297 ~~~~~~g~~~~~--------------l~~~---~~-p~~iavd~-~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~ 357 (461)
+..-.||+...+ ++.. .+ .+. .+.+ .++.+|+|. .+.|+.+++.+.
T Consensus 161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~--------------eG~V~~id~~~~ 225 (352)
T TIGR02658 161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTY--------------TGKIFQIDLSSG 225 (352)
T ss_pred EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEec--------------CCeEEEEecCCC
Confidence 111122222221 1111 00 111 2233 233333332 257777776554
Q ss_pred CeEEEe-----eCC----CCCcee---EEEecCCCeEEE-EcCC--------CCeEEEEEecCCCCeEEEEEccccceee
Q psy17325 358 NRSTII-----STK----IYWPNG---LTLDIATRRVYF-ADSK--------LDFIDFCNYDGTGRQQVILIDLMVEFTN 416 (461)
Q Consensus 358 ~~~~l~-----~~~----l~~p~g---laiD~~~~~ly~-~d~~--------~~~I~~~~~~g~g~~~~~~~~~~~~~~~ 416 (461)
...... ... -=.|.| +++++.+++||+ +... .+.|..+|. .++.....+..+ ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~-~t~kvi~~i~vG-~~--- 300 (352)
T TIGR02658 226 DAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA-KTGKRLRKIELG-HE--- 300 (352)
T ss_pred cceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC-CCCeEEEEEeCC-Cc---
Confidence 333221 111 114666 999999999999 4322 268999998 244433333222 11
Q ss_pred ccCCCCCcceEEEeeeCC-EEEEEeCCCcee
Q psy17325 417 DLMGDNGVPALALDLENG-MLYYSTEGAEFL 446 (461)
Q Consensus 417 ~~~~~~~~~~~~l~~~~~-~lYwtd~~~~~i 446 (461)
+.+++++.++. .||.|++.++.|
T Consensus 301 -------~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 301 -------IDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred -------eeeEEECCCCCeEEEEeCCCCCcE
Confidence 23677778888 999999887754
No 29
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.00 E-value=6.3e-07 Score=89.67 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=109.8
Q ss_pred eEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEe------c-CCCCCceeEEEcCCC----CceEEEE
Q psy17325 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLA------K-DNITQPRGMMLDPSP----GTRWLFW 210 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~------~-~~~~~p~~ia~d~~~----g~~~ly~ 210 (461)
.++..+|..|.+|++.+ .+++|++....++|.+++.++...+.+. . ....-+.+||++|.- ..++||+
T Consensus 23 ~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 35778999999999987 5689999987899999987654433221 1 133557899999763 2227888
Q ss_pred eec-----C---CCCcEEEEecCCC-----CcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 211 TDW-----G---ENPRIERIGMDGS-----NRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 211 td~-----~---~~~~I~~~~~dG~-----~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
+-. . ...+|.|..++.. ..++|+.. ....-..|++++ .++||++-.....-....... .
T Consensus 102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~-~-- 177 (454)
T TIGR03606 102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFL-P-- 177 (454)
T ss_pred EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccC-c--
Confidence 731 1 2468999988632 23444432 112344689987 467999765442100000000 0
Q ss_pred ccceeeeEEEEEec----CCCCcceeeeEEeCCCCc----------eEEEEeCCe--eeeEEEeccCCeEEEeecC
Q psy17325 274 NYSTIFRKLYWIDE----GGNGVPLKIGKANMDGSN----------ASILVSGQL--YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 274 ~~~~~~~~~yw~d~----~~~~~~~~I~~~~~~g~~----------~~~l~~~~~--p~~iavd~~~~~lY~t~~~ 333 (461)
..-+.+-+.+. ......++|.|+++||+. +..+...++ |.+|++|| .+.||.++.+
T Consensus 178 ---~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~G 249 (454)
T TIGR03606 178 ---NQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQG 249 (454)
T ss_pred ---chhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecC
Confidence 00000000000 000122689999999973 233555555 99999999 7999999876
No 30
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.98 E-value=1.5e-09 Score=71.10 Aligned_cols=41 Identities=46% Similarity=1.007 Sum_probs=38.1
Q ss_pred EEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeec
Q psy17325 207 WLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 247 (461)
Q Consensus 207 ~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~ 247 (461)
+|||+|++..++|.+++|||+++++++...+.+|.||||||
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 89999976656999999999999999999999999999996
No 31
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.97 E-value=4.9e-08 Score=96.96 Aligned_cols=164 Identities=21% Similarity=0.262 Sum_probs=109.1
Q ss_pred CCCCceeEEEcCCCCceEEEEeecCC-----------CCcEEEEec---CCCC-cEEEEecccccceeEEeeccCCeeEE
Q psy17325 190 NITQPRGMMLDPSPGTRWLFWTDWGE-----------NPRIERIGM---DGSN-RSTIISTKIYWPNGLTLDIATRRVYF 254 (461)
Q Consensus 190 ~~~~p~~ia~d~~~g~~~ly~td~~~-----------~~~I~~~~~---dG~~-~~~i~~~~~~~P~glavD~~~~~ly~ 254 (461)
.+.+|++|++|+. | .||+++... ..+|.+..- ||.. ...++.+++..|.||++.. ++ ||+
T Consensus 12 ~~~~P~~ia~d~~-G--~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV 86 (367)
T TIGR02604 12 LLRNPIAVCFDER-G--RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV 86 (367)
T ss_pred ccCCCceeeECCC-C--CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE
Confidence 4789999999987 5 699998411 137777764 4543 3356666788999999985 44 999
Q ss_pred ecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE-eCCCC-----ceEEEEeC--------Ce-eeeEE
Q psy17325 255 ADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA-NMDGS-----NASILVSG--------QL-YEALA 319 (461)
Q Consensus 255 ~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~-~~~g~-----~~~~l~~~--------~~-p~~ia 319 (461)
++... |.+. +.+|. .+++++.. .. +++++
T Consensus 87 ~~~~~------------------------------------i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~ 130 (367)
T TIGR02604 87 ATPPD------------------------------------ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLA 130 (367)
T ss_pred eCCCe------------------------------------EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCce
Confidence 87542 2322 22221 23344331 11 78999
Q ss_pred EeccCCeEEEeecCceeeEEEeec-------CCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeE
Q psy17325 320 LDLENGMLYYSTLKCTRWLFWTDW-------GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 392 (461)
Q Consensus 320 vd~~~~~lY~t~~~~~~~l~~~d~-------~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I 392 (461)
++| .|+||++.....+.-.-... ...+.|+|.+.+|+..+++. ..+..|.||++|+ .++||++|......
T Consensus 131 ~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a-~G~rnp~Gl~~d~-~G~l~~tdn~~~~~ 207 (367)
T TIGR02604 131 WGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA-HGFQNPYGHSVDS-WGDVFFCDNDDPPL 207 (367)
T ss_pred ECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe-cCcCCCccceECC-CCCEEEEccCCCce
Confidence 998 57899987741110000000 12368999999999888776 8899999999995 79999999866655
Q ss_pred EEEEe
Q psy17325 393 DFCNY 397 (461)
Q Consensus 393 ~~~~~ 397 (461)
.+++.
T Consensus 208 ~~i~~ 212 (367)
T TIGR02604 208 CRVTP 212 (367)
T ss_pred eEEcc
Confidence 55543
No 32
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.93 E-value=3.5e-06 Score=80.57 Aligned_cols=185 Identities=11% Similarity=0.120 Sum_probs=114.5
Q ss_pred CeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccc
Q psy17325 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 240 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P 240 (461)
+++|++....+.|.+.+++.......+... ..|++++++|..+ .||.+. .....|...++.+......+.. ...|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~--~l~~~~-~~~~~v~~~d~~~~~~~~~~~~-~~~~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGK--LLYVCA-SDSDTIQVIDLATGEVIGTLPS-GPDP 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCC--EEEEEE-CCCCeEEEEECCCCcEEEeccC-CCCc
Confidence 367888888899999997644433333322 4588999999866 888887 4456788888775433222222 2357
Q ss_pred eeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEE
Q psy17325 241 NGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALA 319 (461)
Q Consensus 241 ~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~ia 319 (461)
..+++++.++.||.+..... .|...++........+.... |.+++
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~----------------------------------~l~~~d~~~~~~~~~~~~~~~~~~~~ 121 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDN----------------------------------LVTVIDIETRKVLAEIPVGVEPEGMA 121 (300)
T ss_pred cEEEECCCCCEEEEEcCCCC----------------------------------eEEEEECCCCeEEeEeeCCCCcceEE
Confidence 78899988888888765442 34555554332211222223 88999
Q ss_pred EeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 320 LDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 320 vd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++|.+..++.+... ...++| .++......... ..-..|..+++++.+..||++-...+.|..+++
T Consensus 122 ~~~dg~~l~~~~~~-~~~~~~-----------~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 122 VSPDGKIVVNTSET-TNMAHF-----------IDTKTYEIVDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDV 186 (300)
T ss_pred ECCCCCEEEEEecC-CCeEEE-----------EeCCCCeEEEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence 99877766665443 112222 222221111111 112357889999887888887666788999998
No 33
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.88 E-value=9.8e-07 Score=80.07 Aligned_cols=240 Identities=15% Similarity=0.191 Sum_probs=147.4
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
.|..+|.+. .+.+++++...+.|-+.|.. |+..+.-+..+ ..|++|.++|..+ .+++| ... .|.|++.....
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~G-a~Phgiv~gpdg~---~Witd-~~~-aI~R~dpkt~e 135 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSG-ASPHGIVVGPDGS---AWITD-TGL-AIGRLDPKTLE 135 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCC-CCCceEEECCCCC---eeEec-Ccc-eeEEecCcccc
Confidence 466677774 67899999999999999965 55555555544 6899999999855 89999 444 88887764333
Q ss_pred cEEEEec---ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 229 RSTIIST---KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 229 ~~~i~~~---~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.+.+-.. .-..-+-..+|. .++|+|+....- -.|.++.-..
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G~-----------------------------------yGrLdPa~~~ 179 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDP-WGNLWFTGQIGA-----------------------------------YGRLDPARNV 179 (353)
T ss_pred eEEeecccccCCCcccceeeCC-CccEEEeecccc-----------------------------------ceecCcccCc
Confidence 3333221 111234567885 678888765320 1122222222
Q ss_pred eEEEEeCCe--eeeEEEeccCCeEEEeecC---------------------------------ceeeEEEeecCCCCceE
Q psy17325 306 ASILVSGQL--YEALALDLENGMLYYSTLK---------------------------------CTRWLFWTDWGENPRIE 350 (461)
Q Consensus 306 ~~~l~~~~~--p~~iavd~~~~~lY~t~~~---------------------------------~~~~l~~~d~~~~~~I~ 350 (461)
.++.-.... |+||.+.| +|.+|++... ..+.++-++|+ +++++
T Consensus 180 i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg-~g~l~ 257 (353)
T COG4257 180 ISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG-TGSLH 257 (353)
T ss_pred eeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC-Cceee
Confidence 222211111 66666665 4556665322 12455555665 77788
Q ss_pred EEeecCCCeEEE-eeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEE
Q psy17325 351 RIGMDGSNRSTI-ISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALAL 429 (461)
Q Consensus 351 ~~~~dG~~~~~l-~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 429 (461)
|++..-+.-..- +-..-..|..+-|| ..++++..|+..+.|.|+|. .-.. ..++-...... ..+.|
T Consensus 258 rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~agai~rfdp--eta~-ftv~p~pr~n~---------gn~ql 324 (353)
T COG4257 258 RFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEADAGAIGRFDP--ETAR-FTVLPIPRPNS---------GNIQL 324 (353)
T ss_pred EeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccccCceeecCc--ccce-EEEecCCCCCC---------Cceec
Confidence 887655543322 22344578999999 88999999999999999998 2222 22222221111 14566
Q ss_pred eeeCCEEEEEeCCCceee
Q psy17325 430 DLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 430 ~~~~~~lYwtd~~~~~i~ 447 (461)
.-..|.|+.++.+...++
T Consensus 325 ~gr~ge~W~~e~gvd~lv 342 (353)
T COG4257 325 DGRPGELWFTEAGVDALV 342 (353)
T ss_pred cCCCCceeecccCcceeE
Confidence 667789999999887664
No 34
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=2.7e-06 Score=80.11 Aligned_cols=237 Identities=15% Similarity=0.194 Sum_probs=157.2
Q ss_pred eEEEEeCC---CCeEEEEeCCCCc---EEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecCCC-CcEEEE
Q psy17325 162 HIYWLDSR---LNRIEVCDENGTN---RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGS-NRSTII 233 (461)
Q Consensus 162 ~ly~~d~~---~~~I~~~~~~G~~---~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~dG~-~~~~i~ 233 (461)
++|+.... .+.|.+.+++... ........+.+|.-|++++..+ .||..... ....|.....|.. .+-+++
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~--~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR--HLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCC--EEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 45555544 6678888777433 2222334568899999999977 99988632 3578888887764 444444
Q ss_pred ec---ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE--
Q psy17325 234 ST---KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI-- 308 (461)
Q Consensus 234 ~~---~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~-- 308 (461)
.. .-..|.-+++|..++.||.+....+.|. ++....+|.-..+
T Consensus 82 n~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~--------------------------------v~p~~~dG~l~~~v~ 129 (346)
T COG2706 82 NRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS--------------------------------VYPLQADGSLQPVVQ 129 (346)
T ss_pred eccccCCCCCeEEEECCCCCEEEEEEccCceEE--------------------------------EEEcccCCcccccee
Confidence 43 2234699999999999999999887653 3333334443222
Q ss_pred -EEeCCe----------eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee-cCCCeEE---EeeCCCCCceeE
Q psy17325 309 -LVSGQL----------YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM-DGSNRST---IISTKIYWPNGL 373 (461)
Q Consensus 309 -l~~~~~----------p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~-dG~~~~~---l~~~~l~~p~gl 373 (461)
+...+. ++...++|.+++|...|.+ .-+|...++ ||..... .+ ..-.-|.-|
T Consensus 130 ~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG------------~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi 196 (346)
T COG2706 130 VVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG------------TDRIFLYDLDDGKLTPADPAEV-KPGAGPRHI 196 (346)
T ss_pred eeecCCCCCCccccCCccceeeeCCCCCEEEEeecC------------CceEEEEEcccCcccccccccc-CCCCCcceE
Confidence 111111 5677889998888888877 556665555 4432211 22 445568999
Q ss_pred EEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 374 TLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 374 aiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
++-+..+..|++..-+++|.....+..+..... +....-++.++.|...-..+.|+.++..||.++.+.+.|
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~-lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE-LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE-eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 999999999999999999999999654233222 223344555666666555677778899999999999877
No 35
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.82 E-value=4.3e-07 Score=88.76 Aligned_cols=221 Identities=23% Similarity=0.278 Sum_probs=127.7
Q ss_pred cCccceeeeeeee---cCCeEEEEeCCC--------CeEEEEeCCCC-----cEEEEec------CCCCCceeEEEcCCC
Q psy17325 146 SGLDLVEGLAYDW---IGGHIYWLDSRL--------NRIEVCDENGT-----NRIVLAK------DNITQPRGMMLDPSP 203 (461)
Q Consensus 146 ~g~~~p~~iavd~---~~~~ly~~d~~~--------~~I~~~~~~G~-----~~~~l~~------~~~~~p~~ia~d~~~ 203 (461)
.+....-|+|+++ .++.||++-+.. .+|.+..++.. ..++++. .......+|+++|.
T Consensus 46 ~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpD- 124 (331)
T PF07995_consen 46 DGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPD- 124 (331)
T ss_dssp STTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TT-
T ss_pred cccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCC-
Confidence 3455678899998 357888887743 47887776544 1233322 23455788999995
Q ss_pred CceEEEEee--cC----------CCCcEEEEecCCCC------------cEEEEecccccceeEEeeccCCeeEEecCCC
Q psy17325 204 GTRWLFWTD--WG----------ENPRIERIGMDGSN------------RSTIISTKIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 204 g~~~ly~td--~~----------~~~~I~~~~~dG~~------------~~~i~~~~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
| +||++- .+ ...+|.|++.+|+. ...+...+++.|.+|++|+.+++||.+|...
T Consensus 125 G--~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 125 G--KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp S--EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred C--cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 6 899983 11 13789999999972 2346677899999999999889999999766
Q ss_pred ceeeecccceeeeeccceeeeEEEEEecCCC-CcceeeeEE----------eCCCCc--eEEEEeCCe-eeeEEEeccCC
Q psy17325 260 DFIDCKSLEIKTNVNYSTIFRKLYWIDEGGN-GVPLKIGKA----------NMDGSN--ASILVSGQL-YEALALDLENG 325 (461)
Q Consensus 260 ~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~-~~~~~I~~~----------~~~g~~--~~~l~~~~~-p~~iavd~~~~ 325 (461)
+..+ .|.++..+.+ |.+..-... ...... ....+.... |.|+++-....
T Consensus 203 ~~~d-----------------ein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~ 265 (331)
T PF07995_consen 203 DGWD-----------------EINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSA 265 (331)
T ss_dssp SSSE-----------------EEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSS
T ss_pred CCCc-----------------EEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCcc
Confidence 4432 3444444433 332111000 011111 111122222 77777652211
Q ss_pred eEEEeecCceeeEEEeecCCCCceEEEeecCCC----eEEEeeCCCC-CceeEEEecCCCeEEEEcCCCCeEEE
Q psy17325 326 MLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN----RSTIISTKIY-WPNGLTLDIATRRVYFADSKLDFIDF 394 (461)
Q Consensus 326 ~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~----~~~l~~~~l~-~p~glaiD~~~~~ly~~d~~~~~I~~ 394 (461)
| - .-.+-+|+.+++ ..+|.+..++... .+.++ .... .|.+|+++ .+|.||+++...++|+|
T Consensus 266 --f-p--~~~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~-~~~~~r~~~v~~~-pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 266 --F-P--EYRGDLFVADYG-GGRIWRLDLDEDGSVTEEEEFL-GGFGGRPRDVAQG-PDGALYVSDDSDGKIYR 331 (331)
T ss_dssp --S-G--GGTTEEEEEETT-TTEEEEEEEETTEEEEEEEEEC-TTSSS-EEEEEEE-TTSEEEEEE-TTTTEEE
T ss_pred --C-c--cccCcEEEecCC-CCEEEEEeeecCCCccceEEcc-ccCCCCceEEEEc-CCCeEEEEECCCCeEeC
Confidence 1 0 013445566664 8899999987432 22334 4555 79999999 56999999888899886
No 36
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.78 E-value=1.3e-05 Score=78.01 Aligned_cols=247 Identities=14% Similarity=0.108 Sum_probs=143.5
Q ss_pred EEcCccceeeeeeeecCCeEEEEeC---------CCCeEEEEeCCCCc-EEEEecC-C-----CCCceeEEEcCCCCceE
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDS---------RLNRIEVCDENGTN-RIVLAKD-N-----ITQPRGMMLDPSPGTRW 207 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~---------~~~~I~~~~~~G~~-~~~l~~~-~-----~~~p~~ia~d~~~g~~~ 207 (461)
+..| ..|.++ +.+.++.||++.+ ..+.|.++|..... ...+..+ . ...|..+++.|... +
T Consensus 43 i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk--~ 118 (352)
T TIGR02658 43 TDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK--T 118 (352)
T ss_pred EEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC--E
Confidence 3444 368886 8888999999999 89999999976544 3333221 1 23455999999977 9
Q ss_pred EEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeec-ccc-eeee--e-c--------
Q psy17325 208 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCK-SLE-IKTN--V-N-------- 274 (461)
Q Consensus 208 ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~-~~~-~~~~--v-~-------- 274 (461)
||++++.....+..+++.......-+... ..+..+........+.+.|...-.+..- .++ ..++ + +
T Consensus 119 l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~ 197 (352)
T TIGR02658 119 LLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLIN 197 (352)
T ss_pred EEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcccccc
Confidence 99998765678888888754432212110 0111111111222222233222110000 000 0011 1 0
Q ss_pred cc---eeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe-----C-----Ce-eee---EEEeccCCeEEEeecCceee
Q psy17325 275 YS---TIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS-----G-----QL-YEA---LALDLENGMLYYSTLKCTRW 337 (461)
Q Consensus 275 ~~---~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~-----~-----~~-p~~---iavd~~~~~lY~t~~~~~~~ 337 (461)
+- ......+|+.... .|+.+++.+........ . +. |.| +++++.+++||++..+ .
T Consensus 198 rP~~~~~dg~~~~vs~eG-----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~---~ 269 (352)
T TIGR02658 198 HPAYSNKSGRLVWPTYTG-----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ---R 269 (352)
T ss_pred CCceEcCCCcEEEEecCC-----eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC---C
Confidence 00 1123555655553 58888876654332211 0 12 444 9999999999995433 1
Q ss_pred EEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCC-eEEEEcCCCCeEEEEEecCCCCeEE
Q psy17325 338 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR-RVYFADSKLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 338 l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~-~ly~~d~~~~~I~~~~~~g~g~~~~ 405 (461)
-.|+.......|...++....+..-+ .--..|.+|++.++++ +||.++...+.|..+|.. ++....
T Consensus 270 ~~~thk~~~~~V~ViD~~t~kvi~~i-~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~-t~k~i~ 336 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGKRLRKI-ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE-TGKELS 336 (352)
T ss_pred ccccccCCCCEEEEEECCCCeEEEEE-eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc-CCeEEe
Confidence 23665555667777776444333333 2345799999999999 999999999999999982 454433
No 37
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=1.1e-05 Score=81.36 Aligned_cols=240 Identities=9% Similarity=0.032 Sum_probs=147.4
Q ss_pred eecCCeEEEEeC-C--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecCCCCcEEE
Q psy17325 157 DWIGGHIYWLDS-R--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTI 232 (461)
Q Consensus 157 d~~~~~ly~~d~-~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~dG~~~~~i 232 (461)
.+.++.+|++.. + ..+|.+++.||...+++.... .-......|... +.+|++... ..+.|+..++.+..++.+
T Consensus 152 ~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~-~~i~y~s~~~~~~~Iyv~dl~tg~~~~l 228 (419)
T PRK04043 152 DWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQ-TAFYYTSYGERKPTLYKYNLYTGKKEKI 228 (419)
T ss_pred CceeeEEEEEEccCCCcceEEEECCCCCceeEEccCC--CeEeEEECCCCC-cEEEEEEccCCCCEEEEEECCCCcEEEE
Confidence 345788999873 3 568999999999988776653 223456666643 137776644 358999999987766666
Q ss_pred EecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC
Q psy17325 233 ISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312 (461)
Q Consensus 233 ~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~ 312 (461)
... -......++.+.+++|.++....+. ..|+..++++...+.+...
T Consensus 229 t~~-~g~~~~~~~SPDG~~la~~~~~~g~--------------------------------~~Iy~~dl~~g~~~~LT~~ 275 (419)
T PRK04043 229 ASS-QGMLVVSDVSKDGSKLLLTMAPKGQ--------------------------------PDIYLYDTNTKTLTQITNY 275 (419)
T ss_pred ecC-CCcEEeeEECCCCCEEEEEEccCCC--------------------------------cEEEEEECCCCcEEEcccC
Confidence 532 1122234566667778776543321 3588888877765555433
Q ss_pred Ce-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC--
Q psy17325 313 QL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL-- 389 (461)
Q Consensus 313 ~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~-- 389 (461)
.. -......|.++.|||+. +.+..+.|++++++|...+.+....... .++++++++|.++-...
T Consensus 276 ~~~d~~p~~SPDG~~I~F~S----------dr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 276 PGIDVNGNFVEDDKRIVFVS----------DRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred CCccCccEECCCCCEEEEEE----------CCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEEEcCCCc
Confidence 21 12235777777776653 3345678999999988776555333222 37888888887764432
Q ss_pred ------CeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCce--e-ecceeEEeeecc
Q psy17325 390 ------DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEF--L-KTPLFCITRNYF 458 (461)
Q Consensus 390 ------~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~--i-~~~~~~~~~~~~ 458 (461)
..|..++++ +...+.+... +.. .....++++..|+++....+. + .+.+.+..+..+
T Consensus 343 ~~~~~~~~I~v~d~~--~g~~~~LT~~--~~~---------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 343 EFGKNTFNLYLISTN--SDYIRRLTAN--GVN---------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred ccCCCCcEEEEEECC--CCCeEECCCC--CCc---------CCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 478999983 3333333322 111 124677888888777654322 3 567766555544
No 38
>KOG4499|consensus
Probab=98.71 E-value=4.8e-06 Score=73.94 Aligned_cols=211 Identities=19% Similarity=0.218 Sum_probs=121.9
Q ss_pred eeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE-EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI-VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~-~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
+|..+|-..+.|||+|...+.|.+.+....... .-+.... -.|.++ |..|+...|..-.+. +....+.||....
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~il-pv~~~~q~~~v~~G~--kf~i~nwd~~~~~ 92 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFIL-PVEGGPQEFAVGCGS--KFVIVNWDGVSES 92 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEE-EecCCCceEEEeecc--eEEEEEcccccce
Confidence 677788889999999999888887665443322 2122110 122222 222322355444332 4445566665543
Q ss_pred EEEeccc---------ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEec-CCCCcceeeeEEe
Q psy17325 231 TIISTKI---------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDE-GGNGVPLKIGKAN 300 (461)
Q Consensus 231 ~i~~~~~---------~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~-~~~~~~~~I~~~~ 300 (461)
.++...+ .+-+.=-+|+.++ -|. -...+. .+. ... .+.++ ..
T Consensus 93 a~v~~t~~ev~~d~kknR~NDgkvdP~Gr-yy~-GtMad~-----------------------~~~le~~--~g~Ly-~~ 144 (310)
T KOG4499|consen 93 AKVYRTLFEVQPDRKKNRLNDGKVDPDGR-YYG-GTMADF-----------------------GDDLEPI--GGELY-SW 144 (310)
T ss_pred eeeeeeccccCchHHhcccccCccCCCCc-eee-eeeccc-----------------------ccccccc--ccEEE-Ee
Confidence 3332211 1234445666433 342 111100 000 000 02233 44
Q ss_pred CCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEe--ec---CCCeEEEee------CCCC
Q psy17325 301 MDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG--MD---GSNRSTIIS------TKIY 368 (461)
Q Consensus 301 ~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~--~d---G~~~~~l~~------~~l~ 368 (461)
+.|...+.+...-. ++||+-|.....+|++|+. +-.|...+ .. -+++++|+. ..-.
T Consensus 145 ~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl------------n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~ 212 (310)
T KOG4499|consen 145 LAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSL------------NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL 212 (310)
T ss_pred ccCCCceeeehhccCCccccccccCcEEEEEccC------------ceEEeeeecCCCcccccCcceeEEeccCCCcCCC
Confidence 55555666655434 9999999999999999987 66664444 32 256777653 1344
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEc
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILID 409 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~ 409 (461)
.|.|++|| .+|+||++-...++|.++++. +|.....+.-
T Consensus 213 ~PDGm~ID-~eG~L~Va~~ng~~V~~~dp~-tGK~L~eikl 251 (310)
T KOG4499|consen 213 EPDGMTID-TEGNLYVATFNGGTVQKVDPT-TGKILLEIKL 251 (310)
T ss_pred CCCcceEc-cCCcEEEEEecCcEEEEECCC-CCcEEEEEEc
Confidence 69999999 699999999999999999994 6776554443
No 39
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=3.3e-05 Score=78.89 Aligned_cols=224 Identities=12% Similarity=0.091 Sum_probs=133.5
Q ss_pred CCeEEEEeCCC----CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecCCCCcEEEEe
Q psy17325 160 GGHIYWLDSRL----NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMDGSNRSTIIS 234 (461)
Q Consensus 160 ~~~ly~~d~~~----~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~dG~~~~~i~~ 234 (461)
++-.|++.... .+|.+++.+|...+.+.... ......++.|... +|+|+.. .....|+..++++...+.+..
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-~~~~~p~wSPDG~--~La~~s~~~g~~~L~~~dl~tg~~~~lt~ 259 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSP-EPLMSPAWSPDGR--KLAYVSFENRKAEIFVQDIYTQVREKVTS 259 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCC-CcccCceECCCCC--EEEEEEecCCCcEEEEEECCCCCeEEecC
Confidence 45556665432 37888999998877665533 2334567888765 7777642 334689999998766554432
Q ss_pred cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe
Q psy17325 235 TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL 314 (461)
Q Consensus 235 ~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~ 314 (461)
. -......++.+.+++|+++....+. ..|++.++++...+.+.....
T Consensus 260 ~-~g~~~~~~wSPDG~~La~~~~~~g~--------------------------------~~Iy~~dl~tg~~~~lt~~~~ 306 (448)
T PRK04792 260 F-PGINGAPRFSPDGKKLALVLSKDGQ--------------------------------PEIYVVDIATKALTRITRHRA 306 (448)
T ss_pred C-CCCcCCeeECCCCCEEEEEEeCCCC--------------------------------eEEEEEECCCCCeEECccCCC
Confidence 2 1122356778888888876433221 247777777666555443322
Q ss_pred -eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC--Ce
Q psy17325 315 -YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL--DF 391 (461)
Q Consensus 315 -p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~--~~ 391 (461)
....++.|.++.|+++. +.+....|+++++++...+.+. ....+..+.++.++++.||++.... ..
T Consensus 307 ~~~~p~wSpDG~~I~f~s----------~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTS----------ERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred CccceEECCCCCEEEEEE----------CCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEecCCceE
Confidence 45567777777776653 2233568999998766655554 2223344568888888998875533 47
Q ss_pred EEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCC
Q psy17325 392 IDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 392 I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
|+.++++ +.....+... ... . ..++++++.+|+++....
T Consensus 376 I~~~dl~--~g~~~~lt~~--~~d-------~--~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 376 IARQDLE--TGAMQVLTST--RLD-------E--SPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred EEEEECC--CCCeEEccCC--CCC-------C--CceECCCCCEEEEEEecC
Confidence 8888883 3333333221 111 0 114566666666655444
No 40
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.58 E-value=1.9e-07 Score=71.55 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=59.5
Q ss_pred eeEEEeccCCeEEEeecCce----eeEEE-eecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC
Q psy17325 316 EALALDLENGMLYYSTLKCT----RWLFW-TDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 390 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~----~~l~~-~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~ 390 (461)
++++|+..+|.|||||+... .+++- .+-..++++.+.++.....++++ .+|..|+||++.+++..|++++....
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEeccCc
Confidence 47899988899999998711 01000 01134689999999999888888 88999999999999999999999999
Q ss_pred eEEEEEe
Q psy17325 391 FIDFCNY 397 (461)
Q Consensus 391 ~I~~~~~ 397 (461)
+|.+..+
T Consensus 80 Ri~rywl 86 (89)
T PF03088_consen 80 RILRYWL 86 (89)
T ss_dssp EEEEEES
T ss_pred eEEEEEE
Confidence 9999999
No 41
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.55 E-value=5e-08 Score=60.84 Aligned_cols=33 Identities=55% Similarity=1.097 Sum_probs=27.2
Q ss_pred cCCcccCceeeccCCccccCCCCeeeeCCCCce
Q psy17325 76 QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 76 ~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
.+++|+|+|.+++++|+|+|++||.|..|+++|
T Consensus 4 ~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 4 NNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp GGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 367899999999999999999999999888877
No 42
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=6.2e-05 Score=76.64 Aligned_cols=227 Identities=14% Similarity=0.174 Sum_probs=132.9
Q ss_pred ecCCeEEEEeCCC-----CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecCCCCcEE
Q psy17325 158 WIGGHIYWLDSRL-----NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMDGSNRST 231 (461)
Q Consensus 158 ~~~~~ly~~d~~~-----~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~dG~~~~~ 231 (461)
+.++-+|++.... .+|.+++.+|...+.+.... ......++.|... +|+++.. ...+.|++.++++...+.
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~wSpDG~--~la~~s~~~~~~~l~~~~l~~g~~~~ 237 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSR-EPILSPRWSPDGK--RIAYVSFEQKRPRIFVQNLDTGRREQ 237 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCC-CceeeeeECCCCC--EEEEEEcCCCCCEEEEEECCCCCEEE
Confidence 3456667665432 26889999998776665433 2345678888755 7755542 234789999998766655
Q ss_pred EEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe
Q psy17325 232 IISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS 311 (461)
Q Consensus 232 i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~ 311 (461)
+.... ......++.+.+++|+++-...+. ..|++.++++...+.+..
T Consensus 238 l~~~~-g~~~~~~~SpDG~~la~~~~~~g~--------------------------------~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 238 ITNFE-GLNGAPAWSPDGSKLAFVLSKDGN--------------------------------PEIYVMDLASRQLSRVTN 284 (430)
T ss_pred ccCCC-CCcCCeEECCCCCEEEEEEccCCC--------------------------------ceEEEEECCCCCeEEccc
Confidence 43221 122346777777788765433221 247777777766554443
Q ss_pred CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC-
Q psy17325 312 GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL- 389 (461)
Q Consensus 312 ~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~- 389 (461)
... ....++.|.++.||++. +......|++.++++...+.+. .........++.++++.|+++....
T Consensus 285 ~~~~~~~~~~spDg~~i~f~s----------~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 285 HPAIDTEPFWGKDGRTLYFTS----------DRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEE----------CCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEEccCC
Confidence 222 34456667677666542 2233567998888776655544 2222333467788888998886433
Q ss_pred -CeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCc
Q psy17325 390 -DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444 (461)
Q Consensus 390 -~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~ 444 (461)
..|..++++ +...+.+.... .. ....++.++..|+++....+
T Consensus 354 ~~~l~~~dl~--tg~~~~lt~~~--~~---------~~p~~spdg~~i~~~~~~~g 396 (430)
T PRK00178 354 NFHVAAQDLQ--RGSVRILTDTS--LD---------ESPSVAPNGTMLIYATRQQG 396 (430)
T ss_pred ceEEEEEECC--CCCEEEccCCC--CC---------CCceECCCCCEEEEEEecCC
Confidence 368888983 33334333221 11 11256667777777665543
No 43
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.53 E-value=4.9e-08 Score=60.87 Aligned_cols=36 Identities=44% Similarity=0.913 Sum_probs=31.2
Q ss_pred ccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCce
Q psy17325 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68 (461)
Q Consensus 33 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C 68 (461)
|..+++.|++.|++.+++|.|.|++||.|..|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 566788999999999999999999999999998887
No 44
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.52 E-value=2.1e-05 Score=75.12 Aligned_cols=212 Identities=18% Similarity=0.245 Sum_probs=115.3
Q ss_pred ceeeeeeeecCCeEEEEeCCC------------CeEEEEeCCCCcE--EEEecCCC----CCceeEEEcCCCC---ceEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRL------------NRIEVCDENGTNR--IVLAKDNI----TQPRGMMLDPSPG---TRWL 208 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~------------~~I~~~~~~G~~~--~~l~~~~~----~~p~~ia~d~~~g---~~~l 208 (461)
++.++.+| ..++|++.|++. -+|...|+..... +..+...+ .....|++|...+ +.++
T Consensus 2 sV~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 35678888 478899999773 3788888765542 22233222 2355789998542 1399
Q ss_pred EEeecCCCCcEEEEecCCCCcEEEEecccccce--eEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEe
Q psy17325 209 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPN--GLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWID 286 (461)
Q Consensus 209 y~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~--glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d 286 (461)
|++|. ....|...++.......+... ...|. ...+...+.
T Consensus 81 YItD~-~~~glIV~dl~~~~s~Rv~~~-~~~~~p~~~~~~i~g~------------------------------------ 122 (287)
T PF03022_consen 81 YITDS-GGPGLIVYDLATGKSWRVLHN-SFSPDPDAGPFTIGGE------------------------------------ 122 (287)
T ss_dssp EEEET-TTCEEEEEETTTTEEEEEETC-GCTTS-SSEEEEETTE------------------------------------
T ss_pred EEeCC-CcCcEEEEEccCCcEEEEecC-CcceeccccceeccCc------------------------------------
Confidence 99994 456888888764332223322 22222 111111111
Q ss_pred cCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEec---cCCeEEEeecCceeeEEEeecCCCCceEEEee----cCC--
Q psy17325 287 EGGNGVPLKIGKANMDGSNASILVSGQLYEALALDL---ENGMLYYSTLKCTRWLFWTDWGENPRIERIGM----DGS-- 357 (461)
Q Consensus 287 ~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~---~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~----dG~-- 357 (461)
.....+| ..||++.| .++.|||.-.. +.+++++.. +.+
T Consensus 123 ----------~~~~~dg-----------~~gial~~~~~d~r~LYf~~ls------------s~~ly~v~T~~L~~~~~~ 169 (287)
T PF03022_consen 123 ----------SFQWPDG-----------IFGIALSPISPDGRWLYFHPLS------------SRKLYRVPTSVLRDPSLS 169 (287)
T ss_dssp ----------EEEETTS-----------EEEEEE-TTSTTS-EEEEEETT-------------SEEEEEEHHHHCSTT--
T ss_pred ----------eEecCCC-----------ccccccCCCCCCccEEEEEeCC------------CCcEEEEEHHHhhCcccc
Confidence 1111222 45677765 55678887655 455666652 221
Q ss_pred -------CeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCC----CeEEEEEccccceeeccCCCCCcce
Q psy17325 358 -------NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTG----RQQVILIDLMVEFTNDLMGDNGVPA 426 (461)
Q Consensus 358 -------~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (461)
..+.+. .......|+++| .+|.||+++...+.|.+.+. ++ .+..++......+. .|
T Consensus 170 ~~~~~~~~v~~lG-~k~~~s~g~~~D-~~G~ly~~~~~~~aI~~w~~--~~~~~~~~~~~l~~d~~~l~---------~p 236 (287)
T PF03022_consen 170 DAQALASQVQDLG-DKGSQSDGMAID-PNGNLYFTDVEQNAIGCWDP--DGPYTPENFEILAQDPRTLQ---------WP 236 (287)
T ss_dssp HHH-HHHT-EEEE-E---SECEEEEE-TTTEEEEEECCCTEEEEEET--TTSB-GCCEEEEEE-CC-GS---------SE
T ss_pred ccccccccceecc-ccCCCCceEEEC-CCCcEEEecCCCCeEEEEeC--CCCcCccchheeEEcCceee---------cc
Confidence 223333 223567899999 59999999999999999999 45 23333333332222 36
Q ss_pred EEEeeeC---CEEEEEeCCCcee
Q psy17325 427 LALDLEN---GMLYYSTEGAEFL 446 (461)
Q Consensus 427 ~~l~~~~---~~lYwtd~~~~~i 446 (461)
-++++.+ ++||+....-+++
T Consensus 237 d~~~i~~~~~g~L~v~snrl~~~ 259 (287)
T PF03022_consen 237 DGLKIDPEGDGYLWVLSNRLQRF 259 (287)
T ss_dssp EEEEE-T--TS-EEEEE-S--SS
T ss_pred ceeeeccccCceEEEEECcchHh
Confidence 7788777 9999987665544
No 45
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.50 E-value=1.6e-05 Score=79.76 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=111.9
Q ss_pred EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEE------Ee-cccccceeEEeecc------CC
Q psy17325 184 IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTI------IS-TKIYWPNGLTLDIA------TR 250 (461)
Q Consensus 184 ~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i------~~-~~~~~P~glavD~~------~~ 250 (461)
..++..++..|++|++.|. | .||+++ ....+|.+++.++...+.+ +. .+...+.|||+++. ++
T Consensus 22 ~~~va~GL~~Pw~maflPD-G--~llVtE-R~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~ 97 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPD-N--QLWVTE-RATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNP 97 (454)
T ss_pred EEEEECCCCCceEEEEcCC-C--eEEEEE-ecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCc
Confidence 3445567899999999996 6 799998 3346898887655433222 11 13566899999854 45
Q ss_pred eeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC-----ceEEEEeCCe------eeeEE
Q psy17325 251 RVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-----NASILVSGQL------YEALA 319 (461)
Q Consensus 251 ~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-----~~~~l~~~~~------p~~ia 319 (461)
.||++-+.... ........+|.|..++.. ..++|+.... -..|+
T Consensus 98 ~lYvsyt~~~~-------------------------~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~ 152 (454)
T TIGR03606 98 YVYISYTYKNG-------------------------DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLV 152 (454)
T ss_pred EEEEEEeccCC-------------------------CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEE
Confidence 67776432110 000000035777766521 2344544221 45789
Q ss_pred EeccCCeEEEeecCcee-e----E--------EEe------ecC-CCCceEEEeecCCC----------eEEEeeCCCCC
Q psy17325 320 LDLENGMLYYSTLKCTR-W----L--------FWT------DWG-ENPRIERIGMDGSN----------RSTIISTKIYW 369 (461)
Q Consensus 320 vd~~~~~lY~t~~~~~~-~----l--------~~~------d~~-~~~~I~~~~~dG~~----------~~~l~~~~l~~ 369 (461)
++|. |+||++.-.... . . -+. |.. -.++|.|++.||+- +..|.+.++.+
T Consensus 153 FgPD-G~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RN 231 (454)
T TIGR03606 153 FGPD-GKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRN 231 (454)
T ss_pred ECCC-CcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccc
Confidence 9984 689998654100 0 0 000 111 24689999999973 23455589999
Q ss_pred ceeEEEecCCCeEEEEcCCC---CeEEEEEe
Q psy17325 370 PNGLTLDIATRRVYFADSKL---DFIDFCNY 397 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~~---~~I~~~~~ 397 (461)
|.||++|+ +++||.+|-+- ..|.++..
T Consensus 232 p~Gla~dp-~G~Lw~~e~Gp~~~DEiN~I~~ 261 (454)
T TIGR03606 232 PQGLAFTP-DGTLYASEQGPNSDDELNIIVK 261 (454)
T ss_pred cceeEECC-CCCEEEEecCCCCCcEEEEecc
Confidence 99999997 89999998765 34555543
No 46
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.48 E-value=2.7e-05 Score=71.83 Aligned_cols=196 Identities=12% Similarity=0.173 Sum_probs=128.4
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
...++++++.++.||.+-...-.|.-.+++|...+++.-..+..|.+|++-.. | ..-.+| ....+++....+-...
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~-n--~fvi~d-ER~~~l~~~~vd~~t~ 162 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG-N--QFVIVD-ERDRALYLFTVDADTT 162 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC-C--EEEEEe-hhcceEEEEEEcCCcc
Confidence 46789999999999998888888999999999988877777889999999753 2 222334 2335666666653322
Q ss_pred EEEEec----------ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE
Q psy17325 230 STIIST----------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299 (461)
Q Consensus 230 ~~i~~~----------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~ 299 (461)
...... .-..-.|||-|+..++||++-..... .||=++.+.. .+.+.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~-------------------~I~~~~~~~~----~l~~~ 219 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPI-------------------GIFEVTQSPS----SLSVH 219 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCc-------------------EEEEEecCCc----ccccc
Confidence 111110 12345799999999999999876532 2232222221 11111
Q ss_pred eCCCC--ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEe--------eCCCCC
Q psy17325 300 NMDGS--NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII--------STKIYW 369 (461)
Q Consensus 300 ~~~g~--~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~--------~~~l~~ 369 (461)
-..+. .+...+.. ..|+.+|+.++.|++-... +.++...+.+|.-+..+. ..++.+
T Consensus 220 ~~~~~~~~~~~f~~D--vSgl~~~~~~~~LLVLS~E------------Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipq 285 (316)
T COG3204 220 ASLDPTADRDLFVLD--VSGLEFNAITNSLLVLSDE------------SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQ 285 (316)
T ss_pred cccCcccccceEeec--cccceecCCCCcEEEEecC------------CceEEEEecCCCeeeeEEeccCCCCCcccCCC
Confidence 11111 11111111 6788999999988886555 677888888887655442 357889
Q ss_pred ceeEEEecCCCeEEEEcC
Q psy17325 370 PNGLTLDIATRRVYFADS 387 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~ 387 (461)
|.|||.| ++|.||++..
T Consensus 286 aEGiamD-d~g~lYIvSE 302 (316)
T COG3204 286 AEGIAMD-DDGNLYIVSE 302 (316)
T ss_pred cceeEEC-CCCCEEEEec
Confidence 9999999 8899998743
No 47
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=0.00018 Score=73.15 Aligned_cols=225 Identities=13% Similarity=0.156 Sum_probs=135.2
Q ss_pred cCCeEEEEeCC----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecCCCCcEEEE
Q psy17325 159 IGGHIYWLDSR----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMDGSNRSTII 233 (461)
Q Consensus 159 ~~~~ly~~d~~----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~dG~~~~~i~ 233 (461)
.++-+|++... ..+|.+++.+|...+.+.... ......++.|... .|.++.. .....|+..++++...+.+.
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~-~~~~~p~wSPDG~--~la~~s~~~g~~~i~i~dl~~G~~~~l~ 239 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVRQVA 239 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCC-CceeeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCCeEEcc
Confidence 45566776543 237999999999877776543 3355788888755 6655432 33478999999876655544
Q ss_pred ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC
Q psy17325 234 STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ 313 (461)
Q Consensus 234 ~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~ 313 (461)
.. -.....+++.+.+++|+++....+. ..|+..++++...+.+....
T Consensus 240 ~~-~~~~~~~~~SPDG~~La~~~~~~g~--------------------------------~~I~~~d~~tg~~~~lt~~~ 286 (429)
T PRK03629 240 SF-PRHNGAPAFSPDGSKLAFALSKTGS--------------------------------LNLYVMDLASGQIRQVTDGR 286 (429)
T ss_pred CC-CCCcCCeEECCCCCEEEEEEcCCCC--------------------------------cEEEEEECCCCCEEEccCCC
Confidence 22 1223357888888888887443221 23666777665555444332
Q ss_pred e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC--CC
Q psy17325 314 L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK--LD 390 (461)
Q Consensus 314 ~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~--~~ 390 (461)
. ....+..|.++.|+++. +.+....|+++++++...+.+. .........++.++++.|+++... ..
T Consensus 287 ~~~~~~~wSPDG~~I~f~s----------~~~g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTS----------DQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred CCcCceEECCCCCEEEEEe----------CCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEEccCCCc
Confidence 2 45567777777665442 2233568999999887666654 333344567788788888776443 34
Q ss_pred eEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCC
Q psy17325 391 FIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 391 ~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
.|+.++++ +|.. ..+.... .. ....++.++.+|+++....
T Consensus 356 ~I~~~dl~-~g~~-~~Lt~~~--~~---------~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 356 HIAKQDLA-TGGV-QVLTDTF--LD---------ETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred eEEEEECC-CCCe-EEeCCCC--CC---------CCceECCCCCEEEEEEcCC
Confidence 68888883 3433 3333211 00 1235666777776665543
No 48
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.43 E-value=0.00017 Score=73.06 Aligned_cols=225 Identities=15% Similarity=0.155 Sum_probs=132.0
Q ss_pred CCeEEEEeCC---CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC-CCcEEEEecCCCCcEEEEec
Q psy17325 160 GGHIYWLDSR---LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE-NPRIERIGMDGSNRSTIIST 235 (461)
Q Consensus 160 ~~~ly~~d~~---~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~-~~~I~~~~~dG~~~~~i~~~ 235 (461)
++.+|+...+ ...|.+.+.+|...+.+.... ......++.|... +|+|+.... ...|+..++.+...+.+...
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~~~~~~~~ 232 (417)
T TIGR02800 156 TRIAYVSKSGKSRRYELQVADYDGANPQTITRSR-EPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQREKVASF 232 (417)
T ss_pred CEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCC-CceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCCEEEeecC
Confidence 4445555442 446888999888777766533 2244566777755 888876432 36799888876544433321
Q ss_pred ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-
Q psy17325 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL- 314 (461)
Q Consensus 236 ~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~- 314 (461)
-.....+++.+.++.|+++....+. ..|+..++++...+.+.....
T Consensus 233 -~~~~~~~~~spDg~~l~~~~~~~~~--------------------------------~~i~~~d~~~~~~~~l~~~~~~ 279 (417)
T TIGR02800 233 -PGMNGAPAFSPDGSKLAVSLSKDGN--------------------------------PDIYVMDLDGKQLTRLTNGPGI 279 (417)
T ss_pred -CCCccceEECCCCCEEEEEECCCCC--------------------------------ccEEEEECCCCCEEECCCCCCC
Confidence 1233456777777788776443221 246777776655444433222
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC--CeE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL--DFI 392 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~--~~I 392 (461)
....++.|.+..|+++. +.+....|+.+++++...+.+. ........+++.+.++.|+++.... .+|
T Consensus 280 ~~~~~~s~dg~~l~~~s----------~~~g~~~iy~~d~~~~~~~~l~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~i 348 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTS----------DRGGSPQIYMMDADGGEVRRLT-FRGGYNASPSWSPDGDLIAFVHREGGGFNI 348 (417)
T ss_pred CCCEEECCCCCEEEEEE----------CCCCCceEEEEECCCCCEEEee-cCCCCccCeEECCCCCEEEEEEccCCceEE
Confidence 23445666666665543 2233567999888877665554 3445566778888888888886543 478
Q ss_pred EEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCc
Q psy17325 393 DFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444 (461)
Q Consensus 393 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~ 444 (461)
..++++ +...+.+.+... . ...++++++++|+++....+
T Consensus 349 ~~~d~~--~~~~~~l~~~~~-~----------~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 349 AVMDLD--GGGERVLTDTGL-D----------ESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred EEEeCC--CCCeEEccCCCC-C----------CCceECCCCCEEEEEEeCCC
Confidence 888883 333333332111 1 11255666777777666553
No 49
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.42 E-value=5.9e-05 Score=69.62 Aligned_cols=213 Identities=16% Similarity=0.176 Sum_probs=131.5
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeE-EecCCCceeeeccccee
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY-FADSKLDFIDCKSLEIK 270 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly-~~d~~~~~i~~~~~~~~ 270 (461)
.+..+|+++|..+ .||.+- +..+.|..++++|....++-...+..|.+|+.= ++..| ++|.....+..
T Consensus 86 ~nvS~LTynp~~r--tLFav~-n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~------ 154 (316)
T COG3204 86 ANVSSLTYNPDTR--TLFAVT-NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI--GGNQFVIVDERDRALYL------ 154 (316)
T ss_pred ccccceeeCCCcc--eEEEec-CCCceEEEEecCCceEEEecccccCChhHeEEe--cCCEEEEEehhcceEEE------
Confidence 4588999999988 999876 667899999999999888888889999999875 45555 45555543321
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCce
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRI 349 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I 349 (461)
+-.|..+.-+.-......+...... +. -+|+|.||.++.||++-... .-+|
T Consensus 155 ------------~~vd~~t~~~~~~~~~i~L~~~~k~-----N~GfEGlA~d~~~~~l~~aKEr~-----------P~~I 206 (316)
T COG3204 155 ------------FTVDADTTVISAKVQKIPLGTTNKK-----NKGFEGLAWDPVDHRLFVAKERN-----------PIGI 206 (316)
T ss_pred ------------EEEcCCccEEeccceEEeccccCCC-----CcCceeeecCCCCceEEEEEccC-----------CcEE
Confidence 1111111000000001111111100 11 68999999999999886551 2245
Q ss_pred EEEeecCCCeEEEee----C----CCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCC
Q psy17325 350 ERIGMDGSNRSTIIS----T----KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGD 421 (461)
Q Consensus 350 ~~~~~dG~~~~~l~~----~----~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~ 421 (461)
+..++.-+...+-+. . -+..-.|+.+|..++.|++-.-....+..++++|+-.....+..+..++..++
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~di--- 283 (316)
T COG3204 207 FEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDI--- 283 (316)
T ss_pred EEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccC---
Confidence 555533222111110 0 13456799999999999998778889999999433333344555555565433
Q ss_pred CCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 422 NGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 422 ~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
+++-+|+.+ +|.||++.+-+-..|.
T Consensus 284 --pqaEGiamDd~g~lYIvSEPnlfy~F 309 (316)
T COG3204 284 --PQAEGIAMDDDGNLYIVSEPNLFYRF 309 (316)
T ss_pred --CCcceeEECCCCCEEEEecCCcceec
Confidence 455566665 5899999887765553
No 50
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=0.00028 Score=71.93 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=116.4
Q ss_pred CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee-cCCCCcEEEEecCCCCcEEEEecccccceeEEeeccC
Q psy17325 171 NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD-WGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIAT 249 (461)
Q Consensus 171 ~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td-~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~ 249 (461)
.+|.+.+.+|...+.+.... ......++.|... .|+++. ......|+..++.+..++.+... -......++.+.+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~-~~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGS-SLVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQRELVGNF-PGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCCCCCcEEEecCC-CCeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCcEEEeecC-CCcccCcEECCCC
Confidence 48999999999877765432 2355677888754 665554 23447899999987665544322 1223456777777
Q ss_pred CeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEE
Q psy17325 250 RRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLY 328 (461)
Q Consensus 250 ~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY 328 (461)
++|+++-...+. ..|++.++++...+.+..... ....++.|.+..|+
T Consensus 258 ~~la~~~~~~g~--------------------------------~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~ 305 (435)
T PRK05137 258 RKVVMSLSQGGN--------------------------------TDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIV 305 (435)
T ss_pred CEEEEEEecCCC--------------------------------ceEEEEECCCCceEEccCCCCccCceeEcCCCCEEE
Confidence 788766433221 247777777666555443322 44566777777665
Q ss_pred EeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC--CCeEEEEEecCCCCeEEE
Q psy17325 329 YSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK--LDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 329 ~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~--~~~I~~~~~~g~g~~~~~ 406 (461)
++. +......|+..+++|...+.+... -..-...++.+++++|+++... ...|..+++ +|.....
T Consensus 306 f~s----------~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~--~~~~~~~ 372 (435)
T PRK05137 306 FES----------DRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP--DGSGERI 372 (435)
T ss_pred EEE----------CCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEEC--CCCceEe
Confidence 542 333356899999988877666522 2223446787788888887543 347888888 4444343
Q ss_pred E
Q psy17325 407 L 407 (461)
Q Consensus 407 ~ 407 (461)
+
T Consensus 373 l 373 (435)
T PRK05137 373 L 373 (435)
T ss_pred c
Confidence 3
No 51
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=0.00013 Score=74.42 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=118.1
Q ss_pred CCeEEEEeCC-----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecCCCCcEEEE
Q psy17325 160 GGHIYWLDSR-----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTII 233 (461)
Q Consensus 160 ~~~ly~~d~~-----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~dG~~~~~i~ 233 (461)
++-.|+.... ..+|.+.+.+|.....+.... ......++.|... .|+++... ....|++.++++..++.+.
T Consensus 168 ~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~-~~v~~p~wSpDg~--~la~~s~~~~~~~l~~~dl~~g~~~~l~ 244 (433)
T PRK04922 168 TRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSA-EPILSPAWSPDGK--KLAYVSFERGRSAIYVQDLATGQRELVA 244 (433)
T ss_pred ceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCC-CccccccCCCCCC--EEEEEecCCCCcEEEEEECCCCCEEEec
Confidence 4445655432 236888999998777665432 2344667888755 77766533 3468999999876665553
Q ss_pred ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC
Q psy17325 234 STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ 313 (461)
Q Consensus 234 ~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~ 313 (461)
.. -......++.+.+++|+++-...+. ..|++.++++...+.+....
T Consensus 245 ~~-~g~~~~~~~SpDG~~l~~~~s~~g~--------------------------------~~Iy~~d~~~g~~~~lt~~~ 291 (433)
T PRK04922 245 SF-RGINGAPSFSPDGRRLALTLSRDGN--------------------------------PEIYVMDLGSRQLTRLTNHF 291 (433)
T ss_pred cC-CCCccCceECCCCCEEEEEEeCCCC--------------------------------ceEEEEECCCCCeEECccCC
Confidence 22 1123356788878888776432211 24777777766555444322
Q ss_pred e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC--CC
Q psy17325 314 L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK--LD 390 (461)
Q Consensus 314 ~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~--~~ 390 (461)
. ....++.|.++.|+++. +......|+..++++...+.+. ..-.....+++.++++.|+++... ..
T Consensus 292 ~~~~~~~~spDG~~l~f~s----------d~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~ 360 (433)
T PRK04922 292 GIDTEPTWAPDGKSIYFTS----------DRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQY 360 (433)
T ss_pred CCccceEECCCCCEEEEEE----------CCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCce
Confidence 2 34567777777666543 2233467999888776655554 222345568888888899887543 23
Q ss_pred eEEEEEec
Q psy17325 391 FIDFCNYD 398 (461)
Q Consensus 391 ~I~~~~~~ 398 (461)
.|..++++
T Consensus 361 ~I~v~d~~ 368 (433)
T PRK04922 361 RIAVMDLS 368 (433)
T ss_pred eEEEEECC
Confidence 68888983
No 52
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=0.00023 Score=72.37 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=117.7
Q ss_pred cCCeEEEEeCC-CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecCCCCcEEEEecc
Q psy17325 159 IGGHIYWLDSR-LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMDGSNRSTIISTK 236 (461)
Q Consensus 159 ~~~~ly~~d~~-~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~dG~~~~~i~~~~ 236 (461)
.+.-.|++... ..+|.+++.+|...+.+.... ......++.|... .|+++.. ...+.|+..++++..++.+...
T Consensus 163 ~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~-~~v~~p~wSPDG~--~la~~s~~~~~~~I~~~dl~~g~~~~l~~~- 238 (427)
T PRK02889 163 STRIAYVIKTGNRYQLQISDADGQNAQSALSSP-EPIISPAWSPDGT--KLAYVSFESKKPVVYVHDLATGRRRVVANF- 238 (427)
T ss_pred ccEEEEEEccCCccEEEEECCCCCCceEeccCC-CCcccceEcCCCC--EEEEEEccCCCcEEEEEECCCCCEEEeecC-
Confidence 35666776543 457999999998876665432 2344667888755 6766542 3347899999987665544322
Q ss_pred cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-e
Q psy17325 237 IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-Y 315 (461)
Q Consensus 237 ~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p 315 (461)
-......++.+.+++|+++-...+. ..|++.+++++..+.+..... .
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~--------------------------------~~Iy~~d~~~~~~~~lt~~~~~~ 286 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGN--------------------------------SQIYTVNADGSGLRRLTQSSGID 286 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCC--------------------------------ceEEEEECCCCCcEECCCCCCCC
Confidence 1233467788888888775433221 246777776665544433221 3
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC--CeEE
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL--DFID 393 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~--~~I~ 393 (461)
...++.|.+..|+++ ++.+....|+..++++...+.+.... ......++.++++.|+++.... ..|.
T Consensus 287 ~~~~wSpDG~~l~f~----------s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 287 TEPFFSPDGRSIYFT----------SDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLY 355 (427)
T ss_pred cCeEEcCCCCEEEEE----------ecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEE
Confidence 345677777766654 23334567888888776655444222 2334567887888888775433 3688
Q ss_pred EEEec
Q psy17325 394 FCNYD 398 (461)
Q Consensus 394 ~~~~~ 398 (461)
..+++
T Consensus 356 v~d~~ 360 (427)
T PRK02889 356 VQDLA 360 (427)
T ss_pred EEECC
Confidence 88883
No 53
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.36 E-value=1.3e-06 Score=57.56 Aligned_cols=38 Identities=39% Similarity=0.702 Sum_probs=34.5
Q ss_pred EeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecC
Q psy17325 362 IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDG 399 (461)
Q Consensus 362 l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g 399 (461)
++...+..|+|||+|+.+++|||+|...+.|++++++|
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 44578999999999999999999999999999999943
No 54
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.33 E-value=0.00038 Score=69.04 Aligned_cols=252 Identities=12% Similarity=0.106 Sum_probs=119.2
Q ss_pred EEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEe
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIG 223 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~ 223 (461)
+..+-.-+.++++.+.++.+|+++. .+.|.++|+.......-+..+ ..|+++++.+... ++|.+.+. .+.+..++
T Consensus 32 i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~--~~~v~n~~-~~~v~v~D 106 (369)
T PF02239_consen 32 IPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGK--YVYVANYE-PGTVSVID 106 (369)
T ss_dssp EE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTT--EEEEEEEE-TTEEEEEE
T ss_pred EcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC-CCcceEEEcCCCC--EEEEEecC-CCceeEec
Confidence 3444333566777777889999975 689999998665533333333 4699999998877 99999843 45777766
Q ss_pred cCCCCcEEEEec-cc------ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceee
Q psy17325 224 MDGSNRSTIIST-KI------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI 296 (461)
Q Consensus 224 ~dG~~~~~i~~~-~~------~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I 296 (461)
.........+.. .. .++.+|.-.+.....+++-...+ +|
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~----------------------------------~I 152 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG----------------------------------EI 152 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT----------------------------------EE
T ss_pred cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC----------------------------------eE
Confidence 554333222222 11 12345555443333333334443 45
Q ss_pred eEEeCCCCceE--EEEeCCe-eeeEEEeccCCeEEEeecC----------ceeeE------------------------E
Q psy17325 297 GKANMDGSNAS--ILVSGQL-YEALALDLENGMLYYSTLK----------CTRWL------------------------F 339 (461)
Q Consensus 297 ~~~~~~g~~~~--~l~~~~~-p~~iavd~~~~~lY~t~~~----------~~~~l------------------------~ 339 (461)
...+....... ..+..+. |++..+||.++++|.+... +..++ +
T Consensus 153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV 232 (369)
T ss_dssp EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE
T ss_pred EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceE
Confidence 55554433211 1222222 8888999888888875322 11111 2
Q ss_pred EeecCC-CCceEEEee------cCCCeEEEee-CCCCCceeEEEecCCCeEEEE---cCCCCeEEEEEecCCCCeEEEEE
Q psy17325 340 WTDWGE-NPRIERIGM------DGSNRSTIIS-TKIYWPNGLTLDIATRRVYFA---DSKLDFIDFCNYDGTGRQQVILI 408 (461)
Q Consensus 340 ~~d~~~-~~~I~~~~~------dG~~~~~l~~-~~l~~p~glaiD~~~~~ly~~---d~~~~~I~~~~~~g~g~~~~~~~ 408 (461)
|.-.+. ...|--... +-...+++.. ...+.|..+...+.+.+||+. ....+.|..+|. .-.....-.
T Consensus 233 w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~--~tl~~~~~i 310 (369)
T PF02239_consen 233 WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDK--KTLKVVKTI 310 (369)
T ss_dssp EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEEC--CGTEEEE-H
T ss_pred EeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEEC--cCcceeEEE
Confidence 322221 111111111 1111111111 123456777887777777776 466789999999 333322111
Q ss_pred ccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCc
Q psy17325 409 DLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444 (461)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~ 444 (461)
....+.. ...+..+.++..+|++.|..+
T Consensus 311 ~~~~~~~--------~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 311 TPGPGKR--------VVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp HHHHT----------EEEEEE-TTSSEEEEEEE--T
T ss_pred eccCCCc--------EeccEECCCCCEEEEEEecCC
Confidence 1112210 013456667778888888876
No 55
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.30 E-value=0.00054 Score=63.85 Aligned_cols=230 Identities=17% Similarity=0.157 Sum_probs=138.7
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCC-----CCcEEEEec----C---CCCCceeEEEcCCCC------
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-----GTNRIVLAK----D---NITQPRGMMLDPSPG------ 204 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-----G~~~~~l~~----~---~~~~p~~ia~d~~~g------ 204 (461)
.+.+.|..|.||++.+ ++.++++|.+++.....+.+ |.....++. . ....|.|+++....+
T Consensus 17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence 3557788999999986 66899999999999988887 444222222 1 224699999985543
Q ss_pred -----ceEEEEeecCCCCcEEEEecC--CC---CcEEEEecc--cccceeEEeecc--CCeeEEecCCCceeeeccccee
Q psy17325 205 -----TRWLFWTDWGENPRIERIGMD--GS---NRSTIISTK--IYWPNGLTLDIA--TRRVYFADSKLDFIDCKSLEIK 270 (461)
Q Consensus 205 -----~~~ly~td~~~~~~I~~~~~d--G~---~~~~i~~~~--~~~P~glavD~~--~~~ly~~d~~~~~i~~~~~~~~ 270 (461)
.++||.++ ...|...+.. -+ ...+++... -.-=.||||-.. ...||-+|-...+|++-+.
T Consensus 96 g~~~~a~Fif~tE---dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~--- 169 (336)
T TIGR03118 96 GITGPSRFLFVTE---DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG--- 169 (336)
T ss_pred CcccceeEEEEeC---CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC---
Confidence 22466655 2345444322 11 111223221 223457888643 6789999987766543111
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeec-C-CCC
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDW-G-ENP 347 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~-~-~~~ 347 (461)
.-.+..++|.....-+..+. |.+|.- .+++||+|-.....-- -.|. | ..+
T Consensus 170 ------------------------~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~-~d~v~G~G~G 222 (336)
T TIGR03118 170 ------------------------SFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADR-NDEVAGAGLG 222 (336)
T ss_pred ------------------------ccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcc-cccccCCCcc
Confidence 11112233332222111112 777765 4899999743300000 0011 1 135
Q ss_pred ceEEEeecCCCeEEEee-CCCCCceeEEEec-----CCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 348 RIERIGMDGSNRSTIIS-TKIYWPNGLTLDI-----ATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 348 ~I~~~~~dG~~~~~l~~-~~l~~p~glaiD~-----~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
-|...+++|...+-+.+ ..|..|-||++-+ ..+.|.+-..+.++|..+|.+ +|...-.+
T Consensus 223 ~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~-sG~~~g~L 287 (336)
T TIGR03118 223 YVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ-SGAQLGQL 287 (336)
T ss_pred eEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC-CCceeeee
Confidence 69999999998887764 4699999999954 358999999999999999984 56654333
No 56
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=98.24 E-value=6.7e-07 Score=49.95 Aligned_cols=24 Identities=46% Similarity=1.037 Sum_probs=18.5
Q ss_pred CceEeCCCCCeecCCCCceecCcc
Q psy17325 50 GALCTCPPGEILSNDSVTCQDMNE 73 (461)
Q Consensus 50 ~~~C~C~~G~~l~~~~~~C~d~~e 73 (461)
||.|.|++||.+..++++|+||||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 477888888887777788888775
No 57
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.22 E-value=0.0014 Score=64.98 Aligned_cols=186 Identities=12% Similarity=0.133 Sum_probs=108.7
Q ss_pred CeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccc
Q psy17325 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 240 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P 240 (461)
+.+|+++...+++.++|.+......-+.....-+.++++.+..+ ++|++. . ...|..+++.-.....-+.. -..|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr--~~yv~~-r-dg~vsviD~~~~~~v~~i~~-G~~~ 80 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR--YLYVAN-R-DGTVSVIDLATGKVVATIKV-GGNP 80 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS--EEEEEE-T-TSEEEEEETTSSSEEEEEE--SSEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC--EEEEEc-C-CCeEEEEECCcccEEEEEec-CCCc
Confidence 44568899999999999776554433433212245677788766 999998 3 36899999875543333333 3379
Q ss_pred eeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC-CCceEEEEeCCe-----
Q psy17325 241 NGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD-GSNASILVSGQL----- 314 (461)
Q Consensus 241 ~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~-g~~~~~l~~~~~----- 314 (461)
.|+++.+.++.||.+....+.+. +.+.. .+..+.+-....
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~----------------------------------v~D~~tle~v~~I~~~~~~~~~~ 126 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVS----------------------------------VIDAETLEPVKTIPTGGMPVDGP 126 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEE----------------------------------EEETTT--EEEEEE--EE-TTTS
T ss_pred ceEEEcCCCCEEEEEecCCCcee----------------------------------Eeccccccceeeccccccccccc
Confidence 99999999999999987665432 22211 111122211111
Q ss_pred ---eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC-CeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC
Q psy17325 315 ---YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS-NRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 390 (461)
Q Consensus 315 ---p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~-~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~ 390 (461)
+.+|...+.+....++-.. .++|...+.... ...+-....-..|.+..+|+...++|.+-...+
T Consensus 127 ~~Rv~aIv~s~~~~~fVv~lkd------------~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn 194 (369)
T PF02239_consen 127 ESRVAAIVASPGRPEFVVNLKD------------TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSN 194 (369)
T ss_dssp ---EEEEEE-SSSSEEEEEETT------------TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGT
T ss_pred CCCceeEEecCCCCEEEEEEcc------------CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccc
Confidence 3355555544433333333 678887775443 322222234567999999988888888878888
Q ss_pred eEEEEEe
Q psy17325 391 FIDFCNY 397 (461)
Q Consensus 391 ~I~~~~~ 397 (461)
.|..++.
T Consensus 195 ~i~viD~ 201 (369)
T PF02239_consen 195 KIAVIDT 201 (369)
T ss_dssp EEEEEET
T ss_pred eeEEEee
Confidence 9999998
No 58
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.20 E-value=4.5e-06 Score=54.90 Aligned_cols=40 Identities=48% Similarity=0.891 Sum_probs=36.6
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN 182 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~ 182 (461)
++..++..|.|+|+||..+.|||+|...+.|.+++++|..
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 4566888999999999999999999999999999999964
No 59
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.20 E-value=6.5e-05 Score=71.70 Aligned_cols=182 Identities=21% Similarity=0.269 Sum_probs=95.5
Q ss_pred cceeeeeeeecC-----CeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEe
Q psy17325 149 DLVEGLAYDWIG-----GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIG 223 (461)
Q Consensus 149 ~~p~~iavd~~~-----~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~ 223 (461)
.....++||... +.+|++|.....|.+.++.......+.... .. .+|..+ .|..+ + ...-.
T Consensus 61 s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~-~~-----~~p~~~---~~~i~-g----~~~~~ 126 (287)
T PF03022_consen 61 SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNS-FS-----PDPDAG---PFTIG-G----ESFQW 126 (287)
T ss_dssp GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCG-CT-----TS-SSE---EEEET-T----EEEEE
T ss_pred cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCC-cc-----eecccc---ceecc-C----ceEec
Confidence 345678888743 589999999999999997654444443322 11 122211 11111 1 11111
Q ss_pred cCCCCcEEEEecccccceeEEeec---cCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEe
Q psy17325 224 MDGSNRSTIISTKIYWPNGLTLDI---ATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKAN 300 (461)
Q Consensus 224 ~dG~~~~~i~~~~~~~P~glavD~---~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~ 300 (461)
.+| ..|+++.+ .++.|||.--....++++. ...-- -.......
T Consensus 127 ~dg-------------~~gial~~~~~d~r~LYf~~lss~~ly~v~--------------------T~~L~-~~~~~~~~ 172 (287)
T PF03022_consen 127 PDG-------------IFGIALSPISPDGRWLYFHPLSSRKLYRVP--------------------TSVLR-DPSLSDAQ 172 (287)
T ss_dssp TTS-------------EEEEEE-TTSTTS-EEEEEETT-SEEEEEE--------------------HHHHC-STT--HHH
T ss_pred CCC-------------ccccccCCCCCCccEEEEEeCCCCcEEEEE--------------------HHHhh-Cccccccc
Confidence 222 34566644 4567888876654433321 10000 00000000
Q ss_pred CCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC----CCeEEEe-eCC-CCCceeE
Q psy17325 301 MDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG----SNRSTII-STK-IYWPNGL 373 (461)
Q Consensus 301 ~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG----~~~~~l~-~~~-l~~p~gl 373 (461)
.-....+.+...+. ..|+++|+ .|.||+++.. .+.|.+.+.++ .+..+++ +.. +.||.+|
T Consensus 173 ~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~------------~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~ 239 (287)
T PF03022_consen 173 ALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVE------------QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGL 239 (287)
T ss_dssp -HHHT-EEEEE---SECEEEEET-TTEEEEEECC------------CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEE
T ss_pred cccccceeccccCCCCceEEECC-CCcEEEecCC------------CCeEEEEeCCCCcCccchheeEEcCceeecccee
Confidence 00112233333222 67999997 9999999988 88899998888 3444554 345 9999999
Q ss_pred EEec-CCCeEEEEcCCCCe
Q psy17325 374 TLDI-ATRRVYFADSKLDF 391 (461)
Q Consensus 374 aiD~-~~~~ly~~d~~~~~ 391 (461)
+++. .++.||+.-.+..+
T Consensus 240 ~i~~~~~g~L~v~snrl~~ 258 (287)
T PF03022_consen 240 KIDPEGDGYLWVLSNRLQR 258 (287)
T ss_dssp EE-T--TS-EEEEE-S--S
T ss_pred eeccccCceEEEEECcchH
Confidence 9983 27999998655444
No 60
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.19 E-value=0.00026 Score=69.48 Aligned_cols=222 Identities=17% Similarity=0.200 Sum_probs=126.4
Q ss_pred EEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCc----EEEEec----CCCCCceeEEEcCCCCceEEEEeecC
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTN----RIVLAK----DNITQPRGMMLDPSPGTRWLFWTDWG 214 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~----~~~l~~----~~~~~p~~ia~d~~~g~~~ly~td~~ 214 (461)
...++..+.+++. ..+.+|+... +.+..++ |.. ..+++. .....-+.|+++|. | +||++- +
T Consensus 126 fa~~~~~~~~~a~--~~~~~~~~n~----~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pD-G--~Lyvs~-G 195 (399)
T COG2133 126 FAQGRLVYFGISE--PGGGLYVANR----VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPD-G--KLYVTT-G 195 (399)
T ss_pred ccccceeeeEEEe--ecCCceEEEE----EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCC-C--cEEEEe-C
Confidence 3455666766665 4667776544 3333333 311 122222 22455778999997 5 799984 3
Q ss_pred CC-------------CcEEEEecCCCCc-------EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeec
Q psy17325 215 EN-------------PRIERIGMDGSNR-------STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVN 274 (461)
Q Consensus 215 ~~-------------~~I~~~~~dG~~~-------~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~ 274 (461)
++ .+|.+...+|... ..+...++..|.||++++.++.||.++...+.+. -.+--..+-
T Consensus 196 ~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~--~~Deln~i~ 273 (399)
T COG2133 196 SNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALR--GPDELNSIR 273 (399)
T ss_pred CCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCccc--Ccccccccc
Confidence 22 4455544443321 3466778999999999999999999999885541 000000000
Q ss_pred cceeee--EEEEEecCCCCcceeeeEEeCCCCceEEEEe------CCe-eeeEEEeccC------CeEEEeecCceeeEE
Q psy17325 275 YSTIFR--KLYWIDEGGNGVPLKIGKANMDGSNASILVS------GQL-YEALALDLEN------GMLYYSTLKCTRWLF 339 (461)
Q Consensus 275 ~~~~~~--~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~------~~~-p~~iavd~~~------~~lY~t~~~~~~~l~ 339 (461)
....|. ..||-..-+. +...+++....+.. ... |.||++-.-+ +.||++..+
T Consensus 274 ~G~nYGWP~~~~G~~~~g-------~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hg------ 340 (399)
T COG2133 274 PGKNYGWPYAYFGQNYDG-------RAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHG------ 340 (399)
T ss_pred cCCccCCceeccCcccCc-------cccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeec------
Confidence 012232 4455322221 12222333222221 122 7888876221 577777665
Q ss_pred EeecCCCCceEEEeecCCC---eEEEeeC-CCCCceeEEEecCCCeEEEEcCC-CCeEEEEEe
Q psy17325 340 WTDWGENPRIERIGMDGSN---RSTIIST-KIYWPNGLTLDIATRRVYFADSK-LDFIDFCNY 397 (461)
Q Consensus 340 ~~d~~~~~~I~~~~~dG~~---~~~l~~~-~l~~p~glaiD~~~~~ly~~d~~-~~~I~~~~~ 397 (461)
+-.+.+.+.+|.. .+.++.. .-..|.+++++ .++.||++|-. .++|+|+..
T Consensus 341 ------sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~-~DGallv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 341 ------SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVA-PDGALLVLTDQGDGRILRVSY 396 (399)
T ss_pred ------ceeEEEeccCCCcceEEEEEEecCCCCcccceEEC-CCCeEEEeecCCCCeEEEecC
Confidence 3367778888883 3334432 22589999998 67888887666 669999987
No 61
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.00097 Score=68.17 Aligned_cols=205 Identities=12% Similarity=0.063 Sum_probs=125.1
Q ss_pred eeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEecCCCCc
Q psy17325 153 GLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGMDGSNR 229 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~dG~~~ 229 (461)
..++.+.++.|+|+... ..+|.+.++++...+.+.... ......++.|... .|+++ +...+..|+.+++++...
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGK--KLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCC--EEEEEEeCCCCeEEEEEECCCCCe
Confidence 45667777888877543 346999998876655553321 1223578888765 77765 323346799999987765
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
+.+... .......++.+.++.|+++....+. ..|++.++++...+.+
T Consensus 299 ~~lt~~-~~~~~~p~wSpDG~~I~f~s~~~g~--------------------------------~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 299 TRITRH-RAIDTEPSWHPDGKSLIFTSERGGK--------------------------------PQIYRVNLASGKVSRL 345 (448)
T ss_pred EECccC-CCCccceEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCEEEE
Confidence 544332 2234456677777788776433221 2577777776554444
Q ss_pred EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 310 VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 310 ~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
..... ..+.++.|.++.||++... +...+|++.++++...+.+..... ....++.++++.|+++...
T Consensus 346 t~~g~~~~~~~~SpDG~~l~~~~~~----------~g~~~I~~~dl~~g~~~~lt~~~~--d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 346 TFEGEQNLGGSITPDGRSMIMVNRT----------NGKFNIARQDLETGAMQVLTSTRL--DESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred ecCCCCCcCeeECCCCCEEEEEEec----------CCceEEEEEECCCCCeEEccCCCC--CCCceECCCCCEEEEEEec
Confidence 32222 4456788888888776433 123468888888876665542222 1233677788888886543
Q ss_pred C--CeEEEEEecCCCCeEEEE
Q psy17325 389 L--DFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 389 ~--~~I~~~~~~g~g~~~~~~ 407 (461)
. ..|+.++. +|.....+
T Consensus 414 ~g~~~l~~~~~--~G~~~~~l 432 (448)
T PRK04792 414 QGKQVLAAVSI--DGRFKARL 432 (448)
T ss_pred CCceEEEEEEC--CCCceEEC
Confidence 3 35788888 67665444
No 62
>KOG1219|consensus
Probab=98.12 E-value=3e-06 Score=94.64 Aligned_cols=71 Identities=37% Similarity=0.859 Sum_probs=59.0
Q ss_pred CCCC--CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee--cCcceecCCccc--CceeeccCCccccCCCC
Q psy17325 25 GPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ--DMNECEQPGYCS--QMCTNTKGSYICSCNEG 98 (461)
Q Consensus 25 ~~~C--~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~--d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g 98 (461)
|.+| +..+|..+++.-..+|....++|.|.|+.||. |.+|+ .++||. ...|. ..|.|.+|+|.|-|.+|
T Consensus 3896 G~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyT----G~~Ce~~Gi~eCs-~n~C~~gg~C~n~~gsf~CncT~g 3970 (4289)
T KOG1219|consen 3896 GNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYT----GKRCEARGISECS-KNVCGTGGQCINIPGSFHCNCTPG 3970 (4289)
T ss_pred CcccccccccccCCCCCCCCEEEecCCCeeEeCCCCcc----Cceeecccccccc-cccccCCceeeccCCceEeccChh
Confidence 3577 45789888866678899999999999999995 78897 378995 44674 59999999999999999
Q ss_pred ee
Q psy17325 99 YV 100 (461)
Q Consensus 99 ~~ 100 (461)
|.
T Consensus 3971 ~~ 3972 (4289)
T KOG1219|consen 3971 IL 3972 (4289)
T ss_pred Hh
Confidence 95
No 63
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.0015 Score=66.47 Aligned_cols=191 Identities=15% Similarity=0.200 Sum_probs=117.2
Q ss_pred CCeEEEEeCCC----CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecCCCCcEEEEe
Q psy17325 160 GGHIYWLDSRL----NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIIS 234 (461)
Q Consensus 160 ~~~ly~~d~~~----~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~dG~~~~~i~~ 234 (461)
++-.|++.... .+|.+.+.+|.....+.... ......++.|... +|.++... ..+.|+..++.+...+.+..
T Consensus 169 ~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~-~~v~~p~wSPDG~--~la~~s~~~~~~~i~i~dl~tg~~~~l~~ 245 (429)
T PRK01742 169 TRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS-QPLMSPAWSPDGS--KLAYVSFENKKSQLVVHDLRSGARKVVAS 245 (429)
T ss_pred CEEEEEEEEcCCCceEEEEEECCCCCCceEeccCC-CccccceEcCCCC--EEEEEEecCCCcEEEEEeCCCCceEEEec
Confidence 44457766432 58999999998876665432 3356778888755 67666433 34689999988765544432
Q ss_pred cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe
Q psy17325 235 TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL 314 (461)
Q Consensus 235 ~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~ 314 (461)
. -..-..+++.+.+++|+++-...+. ..|+..++++...+.+.....
T Consensus 246 ~-~g~~~~~~wSPDG~~La~~~~~~g~--------------------------------~~Iy~~d~~~~~~~~lt~~~~ 292 (429)
T PRK01742 246 F-RGHNGAPAFSPDGSRLAFASSKDGV--------------------------------LNIYVMGANGGTPSQLTSGAG 292 (429)
T ss_pred C-CCccCceeECCCCCEEEEEEecCCc--------------------------------EEEEEEECCCCCeEeeccCCC
Confidence 2 1122356778777888876433222 236777776665555443322
Q ss_pred -eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEE
Q psy17325 315 -YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 393 (461)
Q Consensus 315 -p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~ 393 (461)
....++.|.+..|+++. +.....+|+..+.++...+.+- .. . ..+++.++++.|+++.. ..|.
T Consensus 293 ~~~~~~wSpDG~~i~f~s----------~~~g~~~I~~~~~~~~~~~~l~-~~-~--~~~~~SpDG~~ia~~~~--~~i~ 356 (429)
T PRK01742 293 NNTEPSWSPDGQSILFTS----------DRSGSPQVYRMSASGGGASLVG-GR-G--YSAQISADGKTLVMING--DNVV 356 (429)
T ss_pred CcCCEEECCCCCEEEEEE----------CCCCCceEEEEECCCCCeEEec-CC-C--CCccCCCCCCEEEEEcC--CCEE
Confidence 55677888777666542 2233568888888777655442 22 1 23567777888888754 5677
Q ss_pred EEEecCCCCe
Q psy17325 394 FCNYDGTGRQ 403 (461)
Q Consensus 394 ~~~~~g~g~~ 403 (461)
.+++. +|..
T Consensus 357 ~~Dl~-~g~~ 365 (429)
T PRK01742 357 KQDLT-SGST 365 (429)
T ss_pred EEECC-CCCe
Confidence 78883 4544
No 64
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.0025 Score=64.99 Aligned_cols=206 Identities=14% Similarity=0.143 Sum_probs=125.8
Q ss_pred eeeeeeeecCCeEEEEeC--CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDS--RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~--~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~dG~ 227 (461)
....++.+.++.|+++.. +...|.+.++.+...+.+.... ....+.++.|... .|+++ +...+..|+.+++++.
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-GMTFAPRFSPDGR--KVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-CcccCcEECCCCC--EEEEEEecCCCceEEEEECCCC
Confidence 344566666777776653 3468999998877665554321 2234667888755 66554 3334578999999887
Q ss_pred CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 228 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 228 ~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
..+.+... .......++.+.+++|+++....+. ..|++.+++|...+
T Consensus 281 ~~~~Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~--------------------------------~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 281 TTTRLTDS-PAIDTSPSYSPDGSQIVFESDRSGS--------------------------------PQLYVMNADGSNPR 327 (435)
T ss_pred ceEEccCC-CCccCceeEcCCCCEEEEEECCCCC--------------------------------CeEEEEECCCCCeE
Confidence 66554332 2223445667767777765432211 25777888877665
Q ss_pred EEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 308 ILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 308 ~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
.+..... ....++.|.++.|+++... +...+|...+++|...+.+. .. .....+++.++++.||++-
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~----------~~~~~i~~~d~~~~~~~~lt-~~-~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQG----------GGQFSIGVMKPDGSGERILT-SG-FLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcC----------CCceEEEEEECCCCceEecc-CC-CCCCCCeECCCCCEEEEEE
Confidence 5543322 3446677888877765432 12346888888877665554 22 2356678888888888863
Q ss_pred CCC-----CeEEEEEecCCCCeEEE
Q psy17325 387 SKL-----DFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 387 ~~~-----~~I~~~~~~g~g~~~~~ 406 (461)
... ..++.+++ +|.....
T Consensus 396 ~~~~~~~~~~L~~~dl--~g~~~~~ 418 (435)
T PRK05137 396 QTPGSGGAPKLYTVDL--TGRNERE 418 (435)
T ss_pred ccCCCCCcceEEEEEC--CCCceEE
Confidence 322 47999999 5555443
No 65
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.0019 Score=65.89 Aligned_cols=206 Identities=14% Similarity=0.103 Sum_probs=125.2
Q ss_pred eeeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEecCCCC
Q psy17325 152 EGLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGMDGSN 228 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~dG~~ 228 (461)
..+++.+.++.|+++... ...|.+.++++...+.+.... .....+++.|... +|+++ +...+..|+..++++..
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~--~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGR--RLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCCC--EEEEEEeCCCCceEEEEECCCCC
Confidence 445666677788887643 346999999877665554321 1234678888765 77665 32334689999998766
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
.+.+... .......++.+.++.|+++....+. ..|++.++++...+.
T Consensus 284 ~~~lt~~-~~~~~~~~~spDG~~l~f~sd~~g~--------------------------------~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 284 LTRLTNH-FGIDTEPTWAPDGKSIYFTSDRGGR--------------------------------PQIYRVAASGGSAER 330 (433)
T ss_pred eEECccC-CCCccceEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCeEE
Confidence 5544322 2223456777777777766432211 247777776655444
Q ss_pred EEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC
Q psy17325 309 LVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 309 l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~ 387 (461)
+..... ...+++.|.++.|+++... +....|+..++++...+.+. .. ......++.+++..|+++..
T Consensus 331 lt~~g~~~~~~~~SpDG~~Ia~~~~~----------~~~~~I~v~d~~~g~~~~Lt-~~-~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 331 LTFQGNYNARASVSPDGKKIAMVHGS----------GGQYRIAVMDLSTGSVRTLT-PG-SLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred eecCCCCccCEEECCCCCEEEEEECC----------CCceeEEEEECCCCCeEECC-CC-CCCCCceECCCCCEEEEEEe
Confidence 433222 4567888888888775432 11336888888776655443 22 12345578777788887644
Q ss_pred --CCCeEEEEEecCCCCeEEEE
Q psy17325 388 --KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 388 --~~~~I~~~~~~g~g~~~~~~ 407 (461)
+...|+.+++ +|.....+
T Consensus 399 ~~g~~~L~~~~~--~g~~~~~l 418 (433)
T PRK04922 399 EGGRGVLAAVST--DGRVRQRL 418 (433)
T ss_pred cCCceEEEEEEC--CCCceEEc
Confidence 3457888888 56554433
No 66
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.09 E-value=1.5e-05 Score=61.07 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=57.5
Q ss_pred eeEEeeccCCeeEEecCCCceeee--c--ccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-e
Q psy17325 241 NGLTLDIATRRVYFADSKLDFIDC--K--SLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-Y 315 (461)
Q Consensus 241 ~glavD~~~~~ly~~d~~~~~i~~--~--~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p 315 (461)
++|+|+..++.|||+|+....-.. + -++.+. .+++.+.++.....++++.+-. |
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~---------------------~GRll~ydp~t~~~~vl~~~L~fp 59 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRP---------------------TGRLLRYDPSTKETTVLLDGLYFP 59 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT------------------------EEEEEEETTTTEEEEEEEEESSE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCC---------------------CcCEEEEECCCCeEEEehhCCCcc
Confidence 478999877999999986521000 0 001111 1689999999888888887533 9
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS 357 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~ 357 (461)
+||++.+.+..|.+++.. ..||.|..+.|.
T Consensus 60 NGVals~d~~~vlv~Et~------------~~Ri~rywl~Gp 89 (89)
T PF03088_consen 60 NGVALSPDESFVLVAETG------------RYRILRYWLKGP 89 (89)
T ss_dssp EEEEE-TTSSEEEEEEGG------------GTEEEEEESSST
T ss_pred CeEEEcCCCCEEEEEecc------------CceEEEEEEeCC
Confidence 999999999999999998 889999998873
No 67
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.004 Score=62.91 Aligned_cols=208 Identities=8% Similarity=0.053 Sum_probs=126.6
Q ss_pred eeeeecCCe-EEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEecCCCCc
Q psy17325 154 LAYDWIGGH-IYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGMDGSNR 229 (461)
Q Consensus 154 iavd~~~~~-ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~dG~~~ 229 (461)
.++.+.++. +|++... ...|.+.++.+...+.+.... ......++.|... +|.++ +...+..|+.+++++...
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-GMLVVSDVSKDGS--KLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-CcEEeeEECCCCC--EEEEEEccCCCcEEEEEECCCCcE
Confidence 445555664 7765543 567999999887777665421 1223355777654 66554 334458999999988766
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
+.|..... .-....+.+.+++|||+....+. ..|++.++++...+.+
T Consensus 270 ~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~--------------------------------~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 270 TQITNYPG-IDVNGNFVEDDKRIVFVSDRLGY--------------------------------PNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEcccCCC-ccCccEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCeEeC
Confidence 55543221 11223567777888877654322 3588888887776554
Q ss_pred EeCCeeeeEEEeccCCeEEEeecCceeeEEEeecC-CCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC-
Q psy17325 310 VSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS- 387 (461)
Q Consensus 310 ~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~- 387 (461)
...+.. ..+++|.++.|.++..... .+++ ....|+.+++++...+.|..... -...++.++++.|+++..
T Consensus 317 t~~g~~-~~~~SPDG~~Ia~~~~~~~-----~~~~~~~~~I~v~d~~~g~~~~LT~~~~--~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 317 VFHGKN-NSSVSTYKNYIVYSSRETN-----NEFGKNTFNLYLISTNSDYIRRLTANGV--NQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ccCCCc-CceECCCCCEEEEEEcCCC-----cccCCCCcEEEEEECCCCCeEECCCCCC--cCCeEECCCCCEEEEEEcc
Confidence 433222 2378888887776643300 0011 12579999998887776653322 224678878888888743
Q ss_pred -CCCeEEEEEecCCCCeEEEE
Q psy17325 388 -KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 388 -~~~~I~~~~~~g~g~~~~~~ 407 (461)
+...+..+++ +|.....+
T Consensus 389 ~~~~~L~~~~l--~g~~~~~l 407 (419)
T PRK04043 389 GNQSALGIIRL--NYNKSFLF 407 (419)
T ss_pred CCcEEEEEEec--CCCeeEEe
Confidence 3346889999 67665544
No 68
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.03 E-value=3.3e-06 Score=55.29 Aligned_cols=39 Identities=51% Similarity=1.129 Sum_probs=31.6
Q ss_pred cCcceec-CCccc--CceeeccCCccccCCCCeeeeCCCCce
Q psy17325 70 DMNECEQ-PGYCS--QMCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 70 d~~eC~~-~~~C~--~~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
||+||.. ...|. +.|+|+.|+|.|.|++||.+..++..|
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 6899984 34686 699999999999999999976665554
No 69
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.0061 Score=62.01 Aligned_cols=207 Identities=8% Similarity=0.062 Sum_probs=126.0
Q ss_pred eeeeeeeecCCeEEEEeC--CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDS--RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~--~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~dG~ 227 (461)
....++.+.++.|.++.. +...|.+.++++...+.+.... .....+++.|... +|+++.. .....|+.+++++.
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~--~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCC--EEEEEEcCCCCcEEEEEECCCC
Confidence 445677777777766542 3457888898876655554321 2234578999866 8887642 23357999999876
Q ss_pred CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 228 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 228 ~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
..+.+... -......++.+.++.|+++-...+. ..|++.++++...+
T Consensus 278 ~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~--------------------------------~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 278 QIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGR--------------------------------PQVYKVNINGGAPQ 324 (429)
T ss_pred CEEEccCC-CCCcCceEECCCCCEEEEEeCCCCC--------------------------------ceEEEEECCCCCeE
Confidence 65555432 2234566777777777655432211 25777888776655
Q ss_pred EEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 308 ILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 308 ~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
.+..... ....++.|.++.|+++... +....|+..++++...+.+. ... .-...++.+++..|+++.
T Consensus 325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~----------~g~~~I~~~dl~~g~~~~Lt-~~~-~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 325 RITWEGSQNQDADVSSDGKFMVMVSSN----------GGQQHIAKQDLATGGVQVLT-DTF-LDETPSIAPNGTMVIYSS 392 (429)
T ss_pred EeecCCCCccCEEECCCCCEEEEEEcc----------CCCceEEEEECCCCCeEEeC-CCC-CCCCceECCCCCEEEEEE
Confidence 5543322 4567788888877765432 11345777888776665554 221 112456777788888875
Q ss_pred CC--CCeEEEEEecCCCCeEEEE
Q psy17325 387 SK--LDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 387 ~~--~~~I~~~~~~g~g~~~~~~ 407 (461)
.. ...++.+++ +|.....+
T Consensus 393 ~~~~~~~l~~~~~--~G~~~~~l 413 (429)
T PRK03629 393 SQGMGSVLNLVST--DGRFKARL 413 (429)
T ss_pred cCCCceEEEEEEC--CCCCeEEC
Confidence 43 335778888 67665444
No 70
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.00 E-value=3.8e-06 Score=54.99 Aligned_cols=40 Identities=40% Similarity=0.810 Sum_probs=32.5
Q ss_pred CCCcccCCCCCCC--CCceeCCCCceEeCCCCCeecCCCCce
Q psy17325 29 DLAECKHKFGLCS--NTCHPTPLGALCTCPPGEILSNDSVTC 68 (461)
Q Consensus 29 ~~~~C~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C 68 (461)
|++||...+..|. ..|+|+.|+|.|.|++||....++..|
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 4688988777786 579999999999999999865555554
No 71
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0058 Score=62.03 Aligned_cols=194 Identities=11% Similarity=0.078 Sum_probs=110.5
Q ss_pred CCeEEEEeCC-------CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCce-EEEEeecCCCCcEEEEecCCCCcEE
Q psy17325 160 GGHIYWLDSR-------LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTR-WLFWTDWGENPRIERIGMDGSNRST 231 (461)
Q Consensus 160 ~~~ly~~d~~-------~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~-~ly~td~~~~~~I~~~~~dG~~~~~ 231 (461)
+.-+|+.... ..+|.+++.+|...+.+....- .-..-+..|...+. ++|++.....+.|+..+++|...+.
T Consensus 147 ~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~-~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~ 225 (428)
T PRK01029 147 GKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHS-LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK 225 (428)
T ss_pred CEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCC-CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE
Confidence 4445665432 3479999999998777654321 11223566664311 3456764556899999999887766
Q ss_pred EEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE--eCCC---Cce
Q psy17325 232 IISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA--NMDG---SNA 306 (461)
Q Consensus 232 i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~--~~~g---~~~ 306 (461)
+... -......++.+.+++|.|+-...+. ..|+.. ++++ ...
T Consensus 226 lt~~-~g~~~~p~wSPDG~~Laf~s~~~g~--------------------------------~di~~~~~~~~~g~~g~~ 272 (428)
T PRK01029 226 ILAL-QGNQLMPTFSPRKKLLAFISDRYGN--------------------------------PDLFIQSFSLETGAIGKP 272 (428)
T ss_pred eecC-CCCccceEECCCCCEEEEEECCCCC--------------------------------cceeEEEeecccCCCCcc
Confidence 6542 2223456778888888876543211 112322 2221 222
Q ss_pred EEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC--CeEEEeeCCCCCceeEEEecCCCeE
Q psy17325 307 SILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS--NRSTIISTKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 307 ~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~--~~~~l~~~~l~~p~glaiD~~~~~l 382 (461)
+.+..... ....++.|.+..|+++. +......|+.+++++. ..+.+. .........++.+++++|
T Consensus 273 ~~lt~~~~~~~~~p~wSPDG~~Laf~s----------~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 273 RRLLNEAFGTQGNPSFSPDGTRLVFVS----------NKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred eEeecCCCCCcCCeEECCCCCEEEEEE----------CCCCCceEEEEECcccccceEEec-cCCCCccceeECCCCCEE
Confidence 33332221 34567888777666543 2223567888887643 233332 332344567788888888
Q ss_pred EEEcCC--CCeEEEEEec
Q psy17325 383 YFADSK--LDFIDFCNYD 398 (461)
Q Consensus 383 y~~d~~--~~~I~~~~~~ 398 (461)
+++... ...|..++++
T Consensus 342 af~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLA 359 (428)
T ss_pred EEEEcCCCCcEEEEEECC
Confidence 886432 3578899983
No 72
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.95 E-value=0.0035 Score=57.51 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=136.2
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeC-CCCcEEEEec--CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDE-NGTNRIVLAK--DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~-~G~~~~~l~~--~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
.+|.+|.+++ .+..+++|.+. .|.+.+. .+...+.-+. ....+-...++|+. | .|+++.. ..---|.+..
T Consensus 104 a~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~-G--~lWFt~q--~G~yGrLdPa 176 (353)
T COG4257 104 ASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPW-G--NLWFTGQ--IGAYGRLDPA 176 (353)
T ss_pred CCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCC-c--cEEEeec--cccceecCcc
Confidence 4789999986 67889999987 8998886 4433332222 12234556789987 5 5888862 1111232222
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce--eeee----------cccee--eeEEEEEecCCCC
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI--KTNV----------NYSTI--FRKLYWIDEGGNG 291 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~--~~~v----------~~~~~--~~~~yw~d~~~~~ 291 (461)
-...++.-...-..|.||.+-+ ++.||++....+.|-.++-.. -+.| -+.|. -+.++-|+++.
T Consensus 177 ~~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~-- 253 (353)
T COG4257 177 RNVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT-- 253 (353)
T ss_pred cCceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCC--
Confidence 2222333333445799999986 788999877666654442100 0000 00011 12444455555
Q ss_pred cceeeeEEeCCCCc-eEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCC
Q psy17325 292 VPLKIGKANMDGSN-ASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIY 368 (461)
Q Consensus 292 ~~~~I~~~~~~g~~-~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~ 368 (461)
+.+++.++.-+. ++--+.... |+.|-|| ..++++.+|.. .+.|.|.+..-...+++. ..-.
T Consensus 254 --g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~------------agai~rfdpeta~ftv~p-~pr~ 317 (353)
T COG4257 254 --GSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEAD------------AGAIGRFDPETARFTVLP-IPRP 317 (353)
T ss_pred --ceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccc------------cCceeecCcccceEEEec-CCCC
Confidence 467777665443 222121111 8889999 56666666655 788999988777777776 4455
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++.-+.+|...+.|+.++.+...+.++..
T Consensus 318 n~gn~ql~gr~ge~W~~e~gvd~lv~~r~ 346 (353)
T COG4257 318 NSGNIQLDGRPGELWFTEAGVDALVTTRI 346 (353)
T ss_pred CCCceeccCCCCceeecccCcceeEEEEe
Confidence 66778999889999999998887776654
No 73
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.004 Score=63.26 Aligned_cols=205 Identities=14% Similarity=0.116 Sum_probs=122.2
Q ss_pred eeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEecCCCCc
Q psy17325 153 GLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGMDGSNR 229 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~dG~~~ 229 (461)
..++.+.++.|+++... ...|.+.++++.....+.... ......++.|... .|+++ +......|+.+++++...
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~d~~~~~~ 276 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGR--TLAVALSRDGNSQIYTVNADGSGL 276 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCC--EEEEEEccCCCceEEEEECCCCCc
Confidence 45666667777776543 346999998877665554221 2345678888866 77664 423447899999987765
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
+.+... .......++.+.+++|+++....+. ..|++.++++...+.+
T Consensus 277 ~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~--------------------------------~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 277 RRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGA--------------------------------PQIYRMPASGGAAQRV 323 (427)
T ss_pred EECCCC-CCCCcCeEEcCCCCEEEEEecCCCC--------------------------------cEEEEEECCCCceEEE
Confidence 554332 2223345677777777765432211 2467777666554444
Q ss_pred EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC-
Q psy17325 310 VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS- 387 (461)
Q Consensus 310 ~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~- 387 (461)
..... ....++.|.++.|+++... +....|+..++++...+.+... ......++.+++..|+++-.
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~----------~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRV----------GGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEcc----------CCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEec
Confidence 32222 3346778878877765432 1123688888776665555422 22345688878888888643
Q ss_pred -CCCeEEEEEecCCCCeEEEE
Q psy17325 388 -KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 388 -~~~~I~~~~~~g~g~~~~~~ 407 (461)
+...++.+++ +|..+..+
T Consensus 392 ~g~~~l~~~~~--~g~~~~~l 410 (427)
T PRK02889 392 GGRSVLAAVSS--DGRIKQRL 410 (427)
T ss_pred CCCEEEEEEEC--CCCceEEe
Confidence 3345778888 56654444
No 74
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=97.94 E-value=3.7e-06 Score=52.46 Aligned_cols=24 Identities=46% Similarity=1.020 Sum_probs=22.4
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++||+..++|||..||+||+||.
T Consensus 10 ~~~Ci~~~~~CDg~~DC~dgsDE~ 33 (35)
T cd00112 10 NGRCIPSSWVCDGEDDCGDGSDEE 33 (35)
T ss_pred CCCeeCHHHcCCCccCCCCCcccc
Confidence 578999999999999999999994
No 75
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.0082 Score=61.07 Aligned_cols=205 Identities=13% Similarity=0.085 Sum_probs=122.0
Q ss_pred eeeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee-cCCCCcEEEEecCCCC
Q psy17325 152 EGLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD-WGENPRIERIGMDGSN 228 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td-~~~~~~I~~~~~dG~~ 228 (461)
...++.+.++.|+++... ...|.+.++++...+.+.... ......++.|... +|+++- ......|+..++++..
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g~~~~~~~SpDG~--~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-GLNGAPAWSPDGS--KLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-CCcCCeEECCCCC--EEEEEEccCCCceEEEEECCCCC
Confidence 445666677788666533 347999999876665554322 1233577888755 776653 2334689999998876
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
.+.+... .......++.+.+++||++....+. ..|++.++++...+.
T Consensus 279 ~~~lt~~-~~~~~~~~~spDg~~i~f~s~~~g~--------------------------------~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 279 LSRVTNH-PAIDTEPFWGKDGRTLYFTSDRGGK--------------------------------PQIYKVNVNGGRAER 325 (430)
T ss_pred eEEcccC-CCCcCCeEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCEEE
Confidence 5544332 2223345666667777766432211 247777776555444
Q ss_pred EEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC
Q psy17325 309 LVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 309 l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~ 387 (461)
+..... ....++.|.++.|+++... .....|+..++++...+.+... ......++.+++..|+++..
T Consensus 326 lt~~~~~~~~~~~Spdg~~i~~~~~~----------~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 326 VTFVGNYNARPRLSADGKTLVMVHRQ----------DGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred eecCCCCccceEECCCCCEEEEEEcc----------CCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEe
Confidence 432222 3345677888888776543 1123588888887766655422 12234478778888888754
Q ss_pred C--CCeEEEEEecCCCCeEEE
Q psy17325 388 K--LDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 388 ~--~~~I~~~~~~g~g~~~~~ 406 (461)
. ...|+.+++ +|.....
T Consensus 394 ~~g~~~l~~~~~--~g~~~~~ 412 (430)
T PRK00178 394 QQGRGVLMLVSI--NGRVRLP 412 (430)
T ss_pred cCCceEEEEEEC--CCCceEE
Confidence 3 356888888 5655433
No 76
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=97.93 E-value=3.3e-06 Score=53.32 Aligned_cols=26 Identities=46% Similarity=1.137 Sum_probs=23.1
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+..++|||..||.||+|| ..|
T Consensus 12 ~~~CI~~~~~CDg~~DC~dgsDE-~~C 37 (37)
T PF00057_consen 12 NGQCIPKSWVCDGIPDCPDGSDE-QNC 37 (37)
T ss_dssp TSSEEEGGGTTSSSCSSSSSTTT-SSH
T ss_pred CCCEEChHHcCCCCCCCCCCccc-ccC
Confidence 56799999999999999999999 444
No 77
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.93 E-value=3.8e-06 Score=46.94 Aligned_cols=24 Identities=46% Similarity=1.018 Sum_probs=22.2
Q ss_pred CccccCCCCeeeeCCCCceeeccc
Q psy17325 90 SYICSCNEGYVLEYDNHTCKAINH 113 (461)
Q Consensus 90 ~~~C~C~~g~~l~~~~~~C~~~~~ 113 (461)
+|.|.|++||++..++++|.+|+|
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 589999999999999999999875
No 78
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.89 E-value=0.0044 Score=57.93 Aligned_cols=208 Identities=15% Similarity=0.191 Sum_probs=115.3
Q ss_pred ecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-----CCCcEEEEec-------ccccceeEEeeccCCeeEE
Q psy17325 187 AKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-----GSNRSTIIST-------KIYWPNGLTLDIATRRVYF 254 (461)
Q Consensus 187 ~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-----G~~~~~i~~~-------~~~~P~glavD~~~~~ly~ 254 (461)
....+.+|+||++-|. + .++++| .........+.+ |.....++.- ....|.|+++...... -+
T Consensus 18 tDp~L~N~WGia~~p~-~--~~WVad-ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F-~v 92 (336)
T TIGR03118 18 VDPGLRNAWGLSYRPG-G--PFWVAN-TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTF-VV 92 (336)
T ss_pred cCccccccceeEecCC-C--CEEEec-CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCce-EE
Confidence 4456789999999995 4 577888 444455555554 4333323221 2357999999854331 12
Q ss_pred ecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC--CCC---ceEEEEeCCe----eeeEEEecc--
Q psy17325 255 ADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM--DGS---NASILVSGQL----YEALALDLE-- 323 (461)
Q Consensus 255 ~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~--~g~---~~~~l~~~~~----p~~iavd~~-- 323 (461)
+..... ..-+.||-++.+. |.--++ +-+ ...+++.... -.|+|+-..
T Consensus 93 t~~g~~----------------~~a~Fif~tEdGT------isaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~ 150 (336)
T TIGR03118 93 SGEGIT----------------GPSRFLFVTEDGT------LSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGG 150 (336)
T ss_pred cCCCcc----------------cceeEEEEeCCce------EEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCC
Confidence 221110 0011244444433 433332 222 1223333221 677887754
Q ss_pred CCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEe-----e---CCCCCceeEEEecCCCeEEEEc---------
Q psy17325 324 NGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII-----S---TKIYWPNGLTLDIATRRVYFAD--------- 386 (461)
Q Consensus 324 ~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~-----~---~~l~~p~glaiD~~~~~ly~~d--------- 386 (461)
..+||-+|.. +++|... |++..++.+ + ..-.-|.+|.- .+++|||+-
T Consensus 151 ~~~LYaadF~------------~g~IDVF--d~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d 214 (336)
T TIGR03118 151 GDYLYAANFR------------QGRIDVF--KGSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRND 214 (336)
T ss_pred CceEEEeccC------------CCceEEe--cCccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccc
Confidence 4566666655 7777765 333332221 1 22335788877 789999983
Q ss_pred ----CCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEee-----eCCEEEEEeCCCceee
Q psy17325 387 ----SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDL-----ENGMLYYSTEGAEFLK 447 (461)
Q Consensus 387 ----~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~lYwtd~~~~~i~ 447 (461)
++.+.|..+++ +|...+.+.+... +. -+.++++++ +.+.|.+-+-++++|-
T Consensus 215 ~v~G~G~G~VdvFd~--~G~l~~r~as~g~-LN-------aPWG~a~APa~FG~~sg~lLVGNFGDG~In 274 (336)
T TIGR03118 215 EVAGAGLGYVNVFTL--NGQLLRRVASSGR-LN-------APWGLAIAPESFGSLSGALLVGNFGDGTIN 274 (336)
T ss_pred cccCCCcceEEEEcC--CCcEEEEeccCCc-cc-------CCceeeeChhhhCCCCCCeEEeecCCceeE
Confidence 34578999999 7877665544322 21 123445543 4588999998888774
No 79
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.80 E-value=0.014 Score=59.04 Aligned_cols=203 Identities=14% Similarity=0.129 Sum_probs=119.7
Q ss_pred eeeeeecCCeEEEEeCCC--CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee-cCCCCcEEEEecCCCCc
Q psy17325 153 GLAYDWIGGHIYWLDSRL--NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD-WGENPRIERIGMDGSNR 229 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~~--~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td-~~~~~~I~~~~~dG~~~ 229 (461)
..++.+.++.|+++.... ..|.+.++.+.....+.... ....++++.|... .|+++. ......|+..++++...
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-~~~~~~~~spDg~--~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-GMNGAPAFSPDGS--KLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCC--EEEEEECCCCCccEEEEECCCCCE
Confidence 445666677888876543 57888998765544443221 2345678888755 777653 23346899999987655
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
+.+... .......++.+.+++|+++...... ..|++.++++...+.+
T Consensus 271 ~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~--------------------------------~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 271 TRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGS--------------------------------PQIYMMDADGGEVRRL 317 (417)
T ss_pred EECCCC-CCCCCCEEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCEEEe
Confidence 444322 1122234555666777765433211 2477777776655444
Q ss_pred EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 310 VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 310 ~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
..... ...+++.|.++.|+++... +...+|+..++++...+.+... ......++.++++.|+++...
T Consensus 318 ~~~~~~~~~~~~spdg~~i~~~~~~----------~~~~~i~~~d~~~~~~~~l~~~--~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 318 TFRGGYNASPSWSPDGDLIAFVHRE----------GGGFNIAVMDLDGGGERVLTDT--GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred ecCCCCccCeEECCCCCEEEEEEcc----------CCceEEEEEeCCCCCeEEccCC--CCCCCceECCCCCEEEEEEeC
Confidence 43322 5567788888877776543 1134678888877555544422 123445677778888887554
Q ss_pred C--CeEEEEEecCCCCeEE
Q psy17325 389 L--DFIDFCNYDGTGRQQV 405 (461)
Q Consensus 389 ~--~~I~~~~~~g~g~~~~ 405 (461)
. ..++.++. +|....
T Consensus 386 ~~~~~l~~~~~--~g~~~~ 402 (417)
T TIGR02800 386 GGRGVLGLVST--DGRFRA 402 (417)
T ss_pred CCcEEEEEEEC--CCceee
Confidence 3 34666666 565543
No 80
>KOG4499|consensus
Probab=97.75 E-value=0.0026 Score=56.94 Aligned_cols=89 Identities=22% Similarity=0.321 Sum_probs=57.6
Q ss_pred eecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCC-C--CeEEEEEccccceeeccCCCCCcceEEE
Q psy17325 353 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGT-G--RQQVILIDLMVEFTNDLMGDNGVPALAL 429 (461)
Q Consensus 353 ~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 429 (461)
.+-|...+.+. ..+.-|+||+.|.+.+..|++|+.+..|...+.|-. | .++.++.+.....+ ....++.+++|
T Consensus 144 ~~~~h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~---~e~~~PDGm~I 219 (310)
T KOG4499|consen 144 WLAGHQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP---FESLEPDGMTI 219 (310)
T ss_pred eccCCCceeee-hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCC---cCCCCCCcceE
Confidence 34444455544 778889999999999999999999999977775422 2 34444443222111 01112335555
Q ss_pred eeeCCEEEEEeCCCcee
Q psy17325 430 DLENGMLYYSTEGAEFL 446 (461)
Q Consensus 430 ~~~~~~lYwtd~~~~~i 446 (461)
+. +|.||++.++.++|
T Consensus 220 D~-eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 220 DT-EGNLYVATFNGGTV 235 (310)
T ss_pred cc-CCcEEEEEecCcEE
Confidence 33 68999999998876
No 81
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.73 E-value=0.036 Score=56.31 Aligned_cols=205 Identities=9% Similarity=0.057 Sum_probs=115.1
Q ss_pred eeeecCCe---EEEEeCC-CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEec--CC-
Q psy17325 155 AYDWIGGH---IYWLDSR-LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGM--DG- 226 (461)
Q Consensus 155 avd~~~~~---ly~~d~~-~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~--dG- 226 (461)
++.+.++. +|++... ...|.+.+++|...+.+.... ......++.|... +|.++ +...+..|+...+ ++
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSPDG~--~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-GNQLMPTFSPRKK--LLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-CCccceEECCCCC--EEEEEECCCCCcceeEEEeecccC
Confidence 44444443 3455432 457999999988766665422 2234567888755 66554 3223356666533 32
Q ss_pred --CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 227 --SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 227 --~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
...+.+...........++.+.+++|+++....+. ..|++.++++.
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~--------------------------------~~ly~~~~~~~ 315 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR--------------------------------PRIYIMQIDPE 315 (428)
T ss_pred CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC--------------------------------ceEEEEECccc
Confidence 22233433222233456778777777776433221 24666666532
Q ss_pred --ceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCe
Q psy17325 305 --NASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRR 381 (461)
Q Consensus 305 --~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ 381 (461)
..+.+..... ....+..|.++.|+++... .....|+..++++...+.+. .........++.++++.
T Consensus 316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~----------~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI----------KGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLH 384 (428)
T ss_pred ccceEEeccCCCCccceeECCCCCEEEEEEcC----------CCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCE
Confidence 2333322212 3456778888877765432 12357888888887777665 33334566788777788
Q ss_pred EEEEcC--CCCeEEEEEecCCCCeEEEE
Q psy17325 382 VYFADS--KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 382 ly~~d~--~~~~I~~~~~~g~g~~~~~~ 407 (461)
|+++-. +...|+.+++ +|.....+
T Consensus 385 L~f~~~~~g~~~L~~vdl--~~g~~~~L 410 (428)
T PRK01029 385 LVYSAGNSNESELYLISL--ITKKTRKI 410 (428)
T ss_pred EEEEECCCCCceEEEEEC--CCCCEEEe
Confidence 887633 3467999999 44443333
No 82
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=97.68 E-value=1.9e-05 Score=48.56 Aligned_cols=23 Identities=52% Similarity=1.151 Sum_probs=21.6
Q ss_pred CCccCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADE 24 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de 24 (461)
++.||+..++|||..||+||+||
T Consensus 11 ~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 11 NGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCEECchhhCCCcCcCcCCCCC
Confidence 57899999999999999999997
No 83
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.58 E-value=0.00017 Score=42.50 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=25.2
Q ss_pred CCCceeEEEecCCCeEEEEcCCCCeEEEE
Q psy17325 367 IYWPNGLTLDIATRRVYFADSKLDFIDFC 395 (461)
Q Consensus 367 l~~p~glaiD~~~~~ly~~d~~~~~I~~~ 395 (461)
+..|.||++| .+|.||++|.+.++|..+
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4689999999 999999999999998764
No 84
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.54 E-value=0.0094 Score=61.67 Aligned_cols=172 Identities=9% Similarity=0.126 Sum_probs=98.7
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEec-CCCCCceeEEEc--CCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec
Q psy17325 159 IGGHIYWLDSRLNRIEVCDENGTNRIVLAK-DNITQPRGMMLD--PSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST 235 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~ia~d--~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~ 235 (461)
.++.||+-|..+.||-|++++-.....++. .+.....|+.+. |.++ ++|-.. . +++-+.
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~--yv~~~~---e---~~~Plp---------- 201 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTG--YVFCNG---E---FRIPLP---------- 201 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCcc--EEEeCc---c---cccccC----------
Confidence 377899999999999999999877665554 344556777776 6666 766532 1 111111
Q ss_pred ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE---EeC
Q psy17325 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL---VSG 312 (461)
Q Consensus 236 ~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l---~~~ 312 (461)
+.++.|+-++... +.+.+.+.+ ..+++ .-.
T Consensus 202 -----------nDGk~l~~~~ey~----------------------------------~~vSvID~e--tmeV~~qV~Vd 234 (635)
T PRK02888 202 -----------NDGKDLDDPKKYR----------------------------------SLFTAVDAE--TMEVAWQVMVD 234 (635)
T ss_pred -----------CCCCEeeccccee----------------------------------EEEEEEECc--cceEEEEEEeC
Confidence 1112222221111 112222111 11221 112
Q ss_pred CeeeeEEEeccCCeEEEeecC-------------ceeeEEEeecCC--------------CCceEEEeecCCC-----eE
Q psy17325 313 QLYEALALDLENGMLYYSTLK-------------CTRWLFWTDWGE--------------NPRIERIGMDGSN-----RS 360 (461)
Q Consensus 313 ~~p~~iavd~~~~~lY~t~~~-------------~~~~l~~~d~~~--------------~~~I~~~~~dG~~-----~~ 360 (461)
+.|+.+++++.++.+|+|... ...++...+|.. .++|-. +|+.. ..
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~V--ID~~t~~~~~~~ 312 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPV--VDGRKAANAGSA 312 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEE--EECCccccCCcc
Confidence 238888888888888887522 122444444421 112222 23333 22
Q ss_pred EEe-eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 361 TII-STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 361 ~l~-~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++. -.--..|.|++++++++++|++....+.+..+++
T Consensus 313 v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 313 LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 221 1345689999999999999999999999999999
No 85
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.46 E-value=0.091 Score=48.52 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=103.7
Q ss_pred eeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEE
Q psy17325 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTI 232 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i 232 (461)
.+.+.+.++ .+++-...+.|.+.+.+.......+......+..+++.+.. .++++. .....|...++........
T Consensus 56 ~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~-~~~~~i~~~~~~~~~~~~~ 130 (289)
T cd00200 56 DVAASADGT-YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG---RILSSS-SRDKTIKVWDVETGKCLTT 130 (289)
T ss_pred EEEECCCCC-EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC---CEEEEe-cCCCeEEEEECCCcEEEEE
Confidence 444444333 44444557889999887643322233332457888998873 355554 3346777777763222222
Q ss_pred EecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC-CceEEEEe
Q psy17325 233 ISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG-SNASILVS 311 (461)
Q Consensus 233 ~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g-~~~~~l~~ 311 (461)
+......+..+++++.+..|+.+. ..+ .|...++.. .....+..
T Consensus 131 ~~~~~~~i~~~~~~~~~~~l~~~~-~~~----------------------------------~i~i~d~~~~~~~~~~~~ 175 (289)
T cd00200 131 LRGHTDWVNSVAFSPDGTFVASSS-QDG----------------------------------TIKLWDLRTGKCVATLTG 175 (289)
T ss_pred eccCCCcEEEEEEcCcCCEEEEEc-CCC----------------------------------cEEEEEccccccceeEec
Confidence 222234577888887655555443 221 244444442 22222222
Q ss_pred CC-eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC
Q psy17325 312 GQ-LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 390 (461)
Q Consensus 312 ~~-~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~ 390 (461)
.. .+..+++.+.+..|+.+.. .+.|...++............-..+..+++++. +.++++-...+
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~ 241 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSS-------------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDG 241 (289)
T ss_pred CccccceEEECCCcCEEEEecC-------------CCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEcCCC
Confidence 22 1778888877666665543 344555555432222222122336778888755 66666655678
Q ss_pred eEEEEEe
Q psy17325 391 FIDFCNY 397 (461)
Q Consensus 391 ~I~~~~~ 397 (461)
.|...++
T Consensus 242 ~i~i~~~ 248 (289)
T cd00200 242 TIRVWDL 248 (289)
T ss_pred cEEEEEc
Confidence 8888888
No 86
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.46 E-value=0.07 Score=54.27 Aligned_cols=201 Identities=11% Similarity=0.146 Sum_probs=115.2
Q ss_pred eeeeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee-cCCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD-WGENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td-~~~~~~I~~~~~dG~ 227 (461)
...+++.+.++.|.++... ...|.+.++.+...+.+.... ..-..+++.|... +|+++- ......|+.+++++.
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCC--EEEEEEecCCcEEEEEEECCCC
Confidence 4556777777788776543 347999998776554443211 1233578888765 777763 233357899998876
Q ss_pred CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 228 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 228 ~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
..+.+... .......++.+.+++|+++....+. ..|+..+.++...+
T Consensus 283 ~~~~lt~~-~~~~~~~~wSpDG~~i~f~s~~~g~--------------------------------~~I~~~~~~~~~~~ 329 (429)
T PRK01742 283 TPSQLTSG-AGNNTEPSWSPDGQSILFTSDRSGS--------------------------------PQVYRMSASGGGAS 329 (429)
T ss_pred CeEeeccC-CCCcCCEEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCeE
Confidence 65555332 2234567778777777776433221 24666666665544
Q ss_pred EEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC
Q psy17325 308 ILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 308 ~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~ 387 (461)
.+ .... ...++.|.++.|+++.. ..|.+.++.+...+.+. ... .-..+++.+++..|+++..
T Consensus 330 ~l-~~~~-~~~~~SpDG~~ia~~~~--------------~~i~~~Dl~~g~~~~lt-~~~-~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 330 LV-GGRG-YSAQISADGKTLVMING--------------DNVVKQDLTSGSTEVLS-STF-LDESPSISPNGIMIIYSST 391 (429)
T ss_pred Ee-cCCC-CCccCCCCCCEEEEEcC--------------CCEEEEECCCCCeEEec-CCC-CCCCceECCCCCEEEEEEc
Confidence 43 2111 33567777777766532 24555665544433333 221 2245678877778888744
Q ss_pred CC--CeEEEEEecCCCCeEEEE
Q psy17325 388 KL--DFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 388 ~~--~~I~~~~~~g~g~~~~~~ 407 (461)
.. ..++.++. +|...+.+
T Consensus 392 ~g~~~~l~~~~~--~G~~~~~l 411 (429)
T PRK01742 392 QGLGKVLQLVSA--DGRFKARL 411 (429)
T ss_pred CCCceEEEEEEC--CCCceEEc
Confidence 22 23444566 56655544
No 87
>KOG1219|consensus
Probab=97.43 E-value=0.00015 Score=81.83 Aligned_cols=76 Identities=29% Similarity=0.790 Sum_probs=58.8
Q ss_pred CCCC--CCcccCCCCCCCCCceeCC-CCceEeCCCCCeecCCCCcee-cCcceecCCcc--cCceeeccCCccccCCCCe
Q psy17325 26 PGCD--LAECKHKFGLCSNTCHPTP-LGALCTCPPGEILSNDSVTCQ-DMNECEQPGYC--SQMCTNTKGSYICSCNEGY 99 (461)
Q Consensus 26 ~~C~--~~~C~~~~~~C~~~C~~~~-~~~~C~C~~G~~l~~~~~~C~-d~~eC~~~~~C--~~~C~~~~g~~~C~C~~g~ 99 (461)
++|- .+.|..++++-...|...+ ++|.|.|++.|. |++|+ +++.|. ..+| ...|....++|.|.|+.||
T Consensus 3858 pgC~l~~d~C~~npCqhgG~C~~~~~ggy~CkCpsqys----G~~CEi~~epC~-snPC~~GgtCip~~n~f~CnC~~gy 3932 (4289)
T KOG1219|consen 3858 PGCSLLTDPCNDNPCQHGGTCISQPKGGYKCKCPSQYS----GNHCEIDLEPCA-SNPCLTGGTCIPFYNGFLCNCPNGY 3932 (4289)
T ss_pred ccccccccccccCcccCCCEecCCCCCceEEeCccccc----Cccccccccccc-CCCCCCCCEEEecCCCeeEeCCCCc
Confidence 3562 3678877755566798776 789999999995 78997 677886 4456 4589999999999999999
Q ss_pred eeeCCCCceee
Q psy17325 100 VLEYDNHTCKA 110 (461)
Q Consensus 100 ~l~~~~~~C~~ 110 (461)
.++.|..
T Consensus 3933 ----TG~~Ce~ 3939 (4289)
T KOG1219|consen 3933 ----TGKRCEA 3939 (4289)
T ss_pred ----cCceeec
Confidence 4666754
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.38 E-value=0.11 Score=47.84 Aligned_cols=193 Identities=11% Similarity=0.104 Sum_probs=103.1
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
...+++.+.++.|+ +-...+.|.+.+.+.................+.+.+... .|+.+. ....|...++......
T Consensus 12 i~~~~~~~~~~~l~-~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~--~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 12 VTCVAFSPDGKLLA-TGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT--YLASGS--SDKTIRLWDLETGECV 86 (289)
T ss_pred EEEEEEcCCCCEEE-EeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC--EEEEEc--CCCeEEEEEcCcccce
Confidence 44556655444444 334467888888765543333322222334788887755 666654 3467777777753332
Q ss_pred EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~ 310 (461)
..+......+..+++.+. ++++++....+ .|...++........+
T Consensus 87 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~----------------------------------~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPD-GRILSSSSRDK----------------------------------TIKVWDVETGKCLTTL 131 (289)
T ss_pred EEEeccCCcEEEEEEcCC-CCEEEEecCCC----------------------------------eEEEEECCCcEEEEEe
Confidence 222222335677777765 44544444332 3444444422222222
Q ss_pred eCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 311 SGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 311 ~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
.... +..+++++.+..|+.+. . .+.|...++............-.....+++.+.+..|+.+..
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~-~------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 197 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSS-Q------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS- 197 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEc-C------------CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-
Confidence 2111 77888888755555443 1 334555555422222222233345778888866667777755
Q ss_pred CCeEEEEEe
Q psy17325 389 LDFIDFCNY 397 (461)
Q Consensus 389 ~~~I~~~~~ 397 (461)
.+.|...++
T Consensus 198 ~~~i~i~d~ 206 (289)
T cd00200 198 DGTIKLWDL 206 (289)
T ss_pred CCcEEEEEC
Confidence 678888888
No 89
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.038 Score=54.54 Aligned_cols=274 Identities=17% Similarity=0.156 Sum_probs=133.8
Q ss_pred EEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-------EEEecCCCCCceeEEEcCCC---CceEEEEeec
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-------IVLAKDNITQPRGMMLDPSP---GTRWLFWTDW 213 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-------~~l~~~~~~~p~~ia~d~~~---g~~~ly~td~ 213 (461)
+..||.+|.+++..+.+ .+.++....+.+..+...+... .++... -..-.++++++.- ...++|++-.
T Consensus 62 ~a~gLe~p~~~~~lP~G-~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~-~~Gll~~al~~~fa~~~~~~~~~a~~ 139 (399)
T COG2133 62 VAQGLEHPWGLARLPDG-VLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRG-QGGLLDIALSPDFAQGRLVYFGISEP 139 (399)
T ss_pred ccccccCchhheecCCc-eEEEEccCCccEEEecCCCcccccccccceEEecc-CCCccceEecccccccceeeeEEEee
Confidence 45678888888888766 6777766657666555333221 111111 1112233333221 1112222221
Q ss_pred CCC----CcEEEEecC-CCC----cEEEEec----ccccceeEEeeccCCeeEEecCCCceeeec-ccceeeeeccceee
Q psy17325 214 GEN----PRIERIGMD-GSN----RSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCK-SLEIKTNVNYSTIF 279 (461)
Q Consensus 214 ~~~----~~I~~~~~d-G~~----~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~-~~~~~~~v~~~~~~ 279 (461)
... .++.++.++ |.. ..+|+.. ...+-.-|++++.+ +||++-.....-... +.. ..-
T Consensus 140 ~~~~~~~n~~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~--------~~~ 210 (399)
T COG2133 140 GGGLYVANRVAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNV--------SLA 210 (399)
T ss_pred cCCceEEEEEEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCC-cEEEEeCCCCCcccccCcc--------ccc
Confidence 111 345555555 311 2333332 23445569999866 999986655111100 000 000
Q ss_pred eEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCc-----------------ee--eEE
Q psy17325 280 RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKC-----------------TR--WLF 339 (461)
Q Consensus 280 ~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~-----------------~~--~l~ 339 (461)
.++. .... ..+...+.++...++.....- |.|++++|.+|.||.++.+. .+ +.|
T Consensus 211 Gk~~--r~~~----a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~ 284 (399)
T COG2133 211 GKVL--RIDR----AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAY 284 (399)
T ss_pred ccee--eecc----CcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceec
Confidence 0000 0000 124445555666555444333 99999999999999999872 11 333
Q ss_pred EeecCCCCceEEEeecCCCeEEEee-----CCCCCceeEEEecCC--------CeEEEEcCCCCeEEEEEecCCCCeEEE
Q psy17325 340 WTDWGENPRIERIGMDGSNRSTIIS-----TKIYWPNGLTLDIAT--------RRVYFADSKLDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 340 ~~d~~~~~~I~~~~~dG~~~~~l~~-----~~l~~p~glaiD~~~--------~~ly~~d~~~~~I~~~~~~g~g~~~~~ 406 (461)
|-.- ..++. .+++.....+.. ..---|.||++ .+ +.||++.-+.-.+.+.++ +|..+.+
T Consensus 285 ~G~~-~~g~~---~~~~~~~~~~~~p~~~~~~h~ApsGmaF--y~G~~fP~~r~~lfV~~hgsw~~~~~~~--~g~~~~~ 356 (399)
T COG2133 285 FGQN-YDGRA---IPDGTVVAGAIQPVYTWAPHIAPSGMAF--YTGDLFPAYRGDLFVGAHGSWPVLRLRP--DGNYKVV 356 (399)
T ss_pred cCcc-cCccc---cCCCcccccccCCceeeccccccceeEE--ecCCcCccccCcEEEEeecceeEEEecc--CCCcceE
Confidence 3110 11111 122322222221 22235789999 43 689999887777888888 5653333
Q ss_pred EEccccceeeccCCCCCcceEEEeee-CCEEEEEeCC-Ccee-ecc
Q psy17325 407 LIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEG-AEFL-KTP 449 (461)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~-~~~i-~~~ 449 (461)
+...... +. .-.|.++++. +|.||+++.. +++| |+.
T Consensus 357 ~~~fl~~---d~----~gR~~dV~v~~DGallv~~D~~~g~i~Rv~ 395 (399)
T COG2133 357 LTGFLSG---DL----GGRPRDVAVAPDGALLVLTDQGDGRILRVS 395 (399)
T ss_pred EEEEEec---CC----CCcccceEECCCCeEEEeecCCCCeEEEec
Confidence 3221111 00 0125666554 5788887776 5555 553
No 90
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.19 E-value=0.12 Score=48.94 Aligned_cols=68 Identities=9% Similarity=0.195 Sum_probs=50.5
Q ss_pred CeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEE
Q psy17325 358 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLY 437 (461)
Q Consensus 358 ~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lY 437 (461)
.-++++ +++..|.+--. .+++||++|++.+.|.+++++ +|....+..- ++. |.+|++.++.+|
T Consensus 194 s~evl~-~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~-~G~~e~Va~v--pG~-----------~rGL~f~G~llv 256 (335)
T TIGR03032 194 SGEVVA-SGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQ-AGKFQPVAFL--PGF-----------TRGLAFAGDFAF 256 (335)
T ss_pred CCCEEE-cCccCCcCCcE--eCCeEEEEECCCCEEEEEcCC-CCcEEEEEEC--CCC-----------CcccceeCCEEE
Confidence 335555 88999999988 899999999999999999993 4777555332 222 467777777888
Q ss_pred EEeCC
Q psy17325 438 YSTEG 442 (461)
Q Consensus 438 wtd~~ 442 (461)
+.=++
T Consensus 257 VgmSk 261 (335)
T TIGR03032 257 VGLSK 261 (335)
T ss_pred EEecc
Confidence 75443
No 91
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.15 E-value=0.0013 Score=38.70 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=24.4
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEE
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEV 175 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~ 175 (461)
|..|.|||+| ..++||++|.++++|.+
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 4579999999 79999999999999976
No 92
>KOG4260|consensus
Probab=97.09 E-value=0.00048 Score=62.34 Aligned_cols=49 Identities=41% Similarity=0.839 Sum_probs=40.3
Q ss_pred ceE-eCCCCCeecCCCCceecCcceecC-Ccc--cCceeeccCCccccCCCCeee
Q psy17325 51 ALC-TCPPGEILSNDSVTCQDMNECEQP-GYC--SQMCTNTKGSYICSCNEGYVL 101 (461)
Q Consensus 51 ~~C-~C~~G~~l~~~~~~C~d~~eC~~~-~~C--~~~C~~~~g~~~C~C~~g~~l 101 (461)
..| .|..||.+. ...|.|+|||... ..| +++|+|+.|+|.|.+.+||+.
T Consensus 217 k~C~kCkkGW~ld--e~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 217 KGCSKCKKGWKLD--EEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred CChhhhcccceec--ccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 345 699999874 6789999999844 456 469999999999999999965
No 93
>KOG4289|consensus
Probab=97.02 E-value=0.00099 Score=72.70 Aligned_cols=76 Identities=29% Similarity=0.701 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCC--CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecC---cceecCCccc--Cceeecc-
Q psy17325 17 DCPNGADEGPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDM---NECEQPGYCS--QMCTNTK- 88 (461)
Q Consensus 17 dC~dg~de~~~C--~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~---~eC~~~~~C~--~~C~~~~- 88 (461)
.|+.|+-. ..| ++++|-.+++.-...|....++|+|.|.+||. |.+|+-. -.| -++.|. ..|++..
T Consensus 1225 rCPpGFTg-d~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~t----GehCEvs~~agrC-vpGvC~nggtC~~~~n 1298 (2531)
T KOG4289|consen 1225 RCPPGFTG-DYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFT----GEHCEVSARAGRC-VPGVCKNGGTCVNLLN 1298 (2531)
T ss_pred eCCCCCCc-ccccchhHhhhcCCCCCCCceEEecCceeEEecCCcc----ccceeeecccCcc-ccceecCCCEEeecCC
Confidence 48988855 578 47899888766667899999999999999995 7888732 234 356674 4888765
Q ss_pred CCccccCCCC
Q psy17325 89 GSYICSCNEG 98 (461)
Q Consensus 89 g~~~C~C~~g 98 (461)
|++.|.|+.|
T Consensus 1299 ggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1299 GGFCCHCPYG 1308 (2531)
T ss_pred CceeccCCCc
Confidence 7889999998
No 94
>KOG4260|consensus
Probab=96.99 E-value=0.00032 Score=63.39 Aligned_cols=76 Identities=32% Similarity=0.729 Sum_probs=56.0
Q ss_pred CCCCCC--CCCCCC-CCCcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCCCceecCcceec-CCcc---cCceeec
Q psy17325 17 DCPNGA--DEGPGC-DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQ-PGYC---SQMCTNT 87 (461)
Q Consensus 17 dC~dg~--de~~~C-~~~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~-~~~C---~~~C~~~ 87 (461)
.|..|. || ..| |++||...+..|.. .|+|+.++|.|.+.+||.. ++++|.- ...| ...|.|+
T Consensus 221 kCkkGW~lde-~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~--------g~d~C~~~~d~~~~kn~~c~ni 291 (350)
T KOG4260|consen 221 KCKKGWKLDE-EGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK--------GVDECQFCADVCASKNRPCMNI 291 (350)
T ss_pred hhcccceecc-cccccHHHHhcCCCCCChhheeecCCCceEecccccccC--------ChHHhhhhhhhcccCCCCcccC
Confidence 455554 45 356 89999987777864 6999999999999999963 2556642 1233 2478999
Q ss_pred cCCccccCCCCeee
Q psy17325 88 KGSYICSCNEGYVL 101 (461)
Q Consensus 88 ~g~~~C~C~~g~~l 101 (461)
.++|.|.|+.++..
T Consensus 292 ~~~~r~v~f~~~~~ 305 (350)
T KOG4260|consen 292 DGQYRCVCFSGLII 305 (350)
T ss_pred CccEEEEeccccee
Confidence 99999999998753
No 95
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.84 E-value=0.41 Score=44.55 Aligned_cols=196 Identities=18% Similarity=0.168 Sum_probs=109.5
Q ss_pred ceeeeeeeecCCeEEEEeCCCC--eEEEEeCCCCcE-EE-EecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLN--RIEVCDENGTNR-IV-LAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~--~I~~~~~~G~~~-~~-l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
..+|+.++ ..+.||-+-...+ +|.+.++..... .. -+... .-..||++-. + .||.--|.+ ......+.+
T Consensus 46 FTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~--d--~l~qLTWk~-~~~f~yd~~ 118 (264)
T PF05096_consen 46 FTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILG--D--KLYQLTWKE-GTGFVYDPN 118 (264)
T ss_dssp EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEET--T--EEEEEESSS-SEEEEEETT
T ss_pred cCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEEC--C--EEEEEEecC-CeEEEEccc
Confidence 45778774 2678998887766 578888775442 22 22222 2377899873 4 899888865 466666766
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.-....-+.- .....||+-| ++.|+.+|... .||+.|.....+.++|.+. .+|..
T Consensus 119 tl~~~~~~~y-~~EGWGLt~d--g~~Li~SDGS~---------------------~L~~~dP~~f~~~~~i~V~-~~g~p 173 (264)
T PF05096_consen 119 TLKKIGTFPY-PGEGWGLTSD--GKRLIMSDGSS---------------------RLYFLDPETFKEVRTIQVT-DNGRP 173 (264)
T ss_dssp TTEEEEEEE--SSS--EEEEC--SSCEEEE-SSS---------------------EEEEE-TTT-SEEEEEE-E-ETTEE
T ss_pred cceEEEEEec-CCcceEEEcC--CCEEEEECCcc---------------------ceEEECCcccceEEEEEEE-ECCEE
Confidence 4322111111 1345689976 78899999865 4666666554333344332 12211
Q ss_pred eEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-C--------------CCCCc
Q psy17325 306 ASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-T--------------KIYWP 370 (461)
Q Consensus 306 ~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-~--------------~l~~p 370 (461)
..- .+- +...+|.||=.-.. +..|.+.++.-....-.++ + ...--
T Consensus 174 v~~------LNE--LE~i~G~IyANVW~------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 174 VSN------LNE--LEYINGKIYANVWQ------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp ---------EEE--EEEETTEEEEEETT------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred CCC------cEe--EEEEcCEEEEEeCC------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 111 112 23346666543322 5677777764443333321 0 12336
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+|||.|+.++++|++-..=.+++.+.+
T Consensus 234 NGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp EEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred EeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 899999999999999877788888877
No 96
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.84 E-value=0.00062 Score=62.73 Aligned_cols=43 Identities=40% Similarity=0.855 Sum_probs=36.7
Q ss_pred CCCceecCccee-cCCcccCceeeccCCccccCCCCeeeeCCCC
Q psy17325 64 DSVTCQDMNECE-QPGYCSQMCTNTKGSYICSCNEGYVLEYDNH 106 (461)
Q Consensus 64 ~~~~C~d~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~ 106 (461)
.+..|.++++|. .+..|.+.|.++.|+|.|.|++||.+..+++
T Consensus 180 ~~~~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 180 QGKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred ccccCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence 356899999997 3457999999999999999999999877654
No 97
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.82 E-value=0.29 Score=48.14 Aligned_cols=127 Identities=24% Similarity=0.454 Sum_probs=71.5
Q ss_pred CCCCCceeEEE--cCCCCceEEEEeecCCCCcEEEEec--CCCCc--EEEEec--ccccceeEEeeccCCeeEEecCCCc
Q psy17325 189 DNITQPRGMML--DPSPGTRWLFWTDWGENPRIERIGM--DGSNR--STIIST--KIYWPNGLTLDIATRRVYFADSKLD 260 (461)
Q Consensus 189 ~~~~~p~~ia~--d~~~g~~~ly~td~~~~~~I~~~~~--dG~~~--~~i~~~--~~~~P~glavD~~~~~ly~~d~~~~ 260 (461)
..+..|.|+++ ++..|+-+.|+.+ ....+....+ ++... ..++.. --..|.|+++|...+.||+++...+
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~G 230 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVG 230 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTE
T ss_pred cccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccE
Confidence 35567899998 4566733455555 2344555444 34432 223322 1247999999999999999998863
Q ss_pred eeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC--CC-ceEEEEe---CCe---eeeEEEec---cCCeEE
Q psy17325 261 FIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD--GS-NASILVS---GQL---YEALALDL---ENGMLY 328 (461)
Q Consensus 261 ~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~--g~-~~~~l~~---~~~---p~~iavd~---~~~~lY 328 (461)
|++...+ +. .++.+.. ..+ .+||++=. ..|+|.
T Consensus 231 -----------------------------------IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLi 275 (381)
T PF02333_consen 231 -----------------------------------IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLI 275 (381)
T ss_dssp -----------------------------------EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEE
T ss_pred -----------------------------------EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEE
Confidence 5665554 33 3444422 123 88999843 346888
Q ss_pred EeecCceeeEEEeecCCCCceEEE
Q psy17325 329 YSTLKCTRWLFWTDWGENPRIERI 352 (461)
Q Consensus 329 ~t~~~~~~~l~~~d~~~~~~I~~~ 352 (461)
+|+.+...|..|--.+.+.-+-++
T Consensus 276 vSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 276 VSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEcCCCCeEEEEecCCCCcccceE
Confidence 888886677777655544334444
No 98
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.55 E-value=0.39 Score=48.58 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=112.7
Q ss_pred eeeeeeecCCeEEEEeC----CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CC-CcEEEEecC
Q psy17325 152 EGLAYDWIGGHIYWLDS----RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-EN-PRIERIGMD 225 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~----~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~-~~I~~~~~d 225 (461)
.|+...+.+..+|++.. ...++...+.||.....+..... ....-+.-+... .+.+..+. .. ++|+..+++
T Consensus 150 t~~~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~-~~~~p~ws~~~~--~~~y~~f~~~~~~~i~~~~l~ 226 (425)
T COG0823 150 TGIKGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGS-LILTPAWSPDGK--KLAYVSFELGGCPRIYYLDLN 226 (425)
T ss_pred cCCcceecceEEEEeecccCCCCceEEEEccCCcceeEecccCc-ceeccccCcCCC--ceEEEEEecCCCceEEEEecc
Confidence 34444555666776655 45678888888887766654321 111112222222 33333322 22 679999999
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
...+..++... ..-...++-+.+++|.++-...+. ..|+..+++++.
T Consensus 227 ~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~--------------------------------~~iy~~dl~~~~ 273 (425)
T COG0823 227 TGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGS--------------------------------PDIYLMDLDGKN 273 (425)
T ss_pred CCccceeeccC-CccCCccCCCCCCEEEEEECCCCC--------------------------------ccEEEEcCCCCc
Confidence 88777777631 222334556667777776655543 358888888887
Q ss_pred eEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 306 ASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 306 ~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
...+..... -..=.+.|.+.+|+++ +|.+..+.|++++++|+..+-+. .......--.+.+++++|-+
T Consensus 274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~----------Sdr~G~p~I~~~~~~g~~~~riT-~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 274 LPRLTNGFGINTSPSWSPDGSKIVFT----------SDRGGRPQIYLYDLEGSQVTRLT-FSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred ceecccCCccccCccCCCCCCEEEEE----------eCCCCCcceEEECCCCCceeEee-ccCCCCcCccCCCCCCEEEE
Confidence 544333221 1223455666666654 56667889999999999886665 33333333344545555555
Q ss_pred EcCCCCe--EEEEEe
Q psy17325 385 ADSKLDF--IDFCNY 397 (461)
Q Consensus 385 ~d~~~~~--I~~~~~ 397 (461)
.....+. |...++
T Consensus 343 ~~~~~g~~~i~~~~~ 357 (425)
T COG0823 343 ESSSGGQWDIDKNDL 357 (425)
T ss_pred EeccCCceeeEEecc
Confidence 4432233 555555
No 99
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.53 E-value=0.54 Score=43.79 Aligned_cols=142 Identities=19% Similarity=0.189 Sum_probs=80.6
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
..-||+++- ++.||..-...+..++.+++.-....-+.- .....||+-|.. .|+.|| ++ .+|+..+...-.
T Consensus 90 ~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~dg~----~Li~SD-GS-~~L~~~dP~~f~ 160 (264)
T PF05096_consen 90 YFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTSDGK----RLIMSD-GS-SRLYFLDPETFK 160 (264)
T ss_dssp --EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEECSS----CEEEE--SS-SEEEEE-TTT-S
T ss_pred ccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEcCCC----EEEEEC-Cc-cceEEECCcccc
Confidence 356888884 889999999999999999875433222221 246899998743 799999 54 588877765322
Q ss_pred c-EEEEecccccceeE--EeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 229 R-STIISTKIYWPNGL--TLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 229 ~-~~i~~~~~~~P~gl--avD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
. ..+--..-..|... .+.+.++.||---..++ .|.+.++....
T Consensus 161 ~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td----------------------------------~I~~Idp~tG~ 206 (264)
T PF05096_consen 161 EVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTD----------------------------------RIVRIDPETGK 206 (264)
T ss_dssp EEEEEE-EETTEE---EEEEEEETTEEEEEETTSS----------------------------------EEEEEETTT-B
T ss_pred eEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCC----------------------------------eEEEEeCCCCe
Confidence 2 22211111122211 22334566554333332 46666665444
Q ss_pred eEEEEe-----------------CCeeeeEEEeccCCeEEEeecC
Q psy17325 306 ASILVS-----------------GQLYEALALDLENGMLYYSTLK 333 (461)
Q Consensus 306 ~~~l~~-----------------~~~p~~iavd~~~~~lY~t~~~ 333 (461)
+.-.+. ..+.+|||.||..+.||+|-..
T Consensus 207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 443331 1127899999999999998766
No 100
>KOG0285|consensus
Probab=96.49 E-value=0.72 Score=44.16 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=76.8
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEE
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~ 222 (461)
++.--+..+..+|||+. +..|.+-+.+..|.+.|+.......-+.+.+...+++++.+..- +||-+- ....|...
T Consensus 146 Vi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp--YlFs~g--edk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP--YLFSAG--EDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc--eEEEec--CCCeeEEE
Confidence 34445668889999974 78888999999999999876665555666677899999999877 888653 55778887
Q ss_pred ecCCCCcEEEEecccccceeEEeeccCCeeEEecCCC
Q psy17325 223 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 223 ~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
+|.-.....-....+.....|++.|.-+. .++-...
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldv-l~t~grD 256 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDV-LVTGGRD 256 (460)
T ss_pred echhhhhHHHhccccceeEEEecccccee-EEecCCc
Confidence 77642211112224556677888875444 4444443
No 101
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=96.35 E-value=0.0044 Score=39.37 Aligned_cols=35 Identities=40% Similarity=0.851 Sum_probs=24.4
Q ss_pred CCcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCCCce
Q psy17325 30 LAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTC 68 (461)
Q Consensus 30 ~~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C 68 (461)
+++|... ..|.+ .|.+..++|.|.|++||. ++..|
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 2 IDECASG-NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred cccCcCC-CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 4566542 34654 799999999999999986 34555
No 102
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.32 E-value=1 Score=44.38 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=63.8
Q ss_pred eeeEEE--eccCCeEEEeecCceeeEEEeecCCCCceEEEee--cCCC--eEEEe--eCCCCCceeEEEecCCCeEEEEc
Q psy17325 315 YEALAL--DLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM--DGSN--RSTII--STKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 315 p~~iav--d~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~--dG~~--~~~l~--~~~l~~p~glaiD~~~~~ly~~d 386 (461)
|+|+.+ ++..|.+|.--.. ..+.++...+ ++.. .-.++ ..--.+|.|+++|...++||+++
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~-----------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgE 226 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNG-----------KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGE 226 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEE-----------TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEE
T ss_pred ceeeEEeecCCCCcEEEEEec-----------CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEec
Confidence 888886 4556666643221 1344544444 2322 12222 12234899999999999999999
Q ss_pred CCCCeEEEEEecCCCCe-EEEEEc-cccceeeccCCCCCcceEEEeee---CCEEEEEeCCCceee
Q psy17325 387 SKLDFIDFCNYDGTGRQ-QVILID-LMVEFTNDLMGDNGVPALALDLE---NGMLYYSTEGAEFLK 447 (461)
Q Consensus 387 ~~~~~I~~~~~~g~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~---~~~lYwtd~~~~~i~ 447 (461)
.. .-|++++.+.++.. ++.+.. ...++..+ .++++|-.. .++|.+++++++.+.
T Consensus 227 E~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aD------vEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 227 ED-VGIWRYDAEPEGGNDRTLVASADGDGLVAD------VEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp TT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-------EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred Cc-cEEEEEecCCCCCCcceeeecccccccccC------ccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 87 48999998755433 333322 12223322 346677432 369999999998663
No 103
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.26 E-value=0.0035 Score=57.72 Aligned_cols=41 Identities=29% Similarity=0.549 Sum_probs=34.3
Q ss_pred CCC-CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCC
Q psy17325 26 PGC-DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSV 66 (461)
Q Consensus 26 ~~C-~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~ 66 (461)
..| +.++|...+..|.+.|.+.+++|.|.|++||.+..+++
T Consensus 182 ~~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 182 KICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred ccCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence 357 56789877788999999999999999999998766543
No 104
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=96.23 E-value=0.012 Score=44.81 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=35.7
Q ss_pred cCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 355 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 355 dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
||++.++++ +++..|+||++|+..+.||+++...+.|.....
T Consensus 42 d~~~~~~va-~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 42 DGKEVKVVA-SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eCCEeEEee-ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 455555555 899999999999999999999999999988776
No 105
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.16 E-value=0.38 Score=50.20 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=46.4
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC---------CeEEEee--CCCCCceeEEEecCCCeEE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS---------NRSTIIS--TKIYWPNGLTLDIATRRVY 383 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~---------~~~~l~~--~~l~~p~glaiD~~~~~ly 383 (461)
|+|++++|.+.++|++... ++.+...+..-- -+.+++. .--..|...++| ..|+.|
T Consensus 323 PHGV~vSPDGkylyVankl------------S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFD-g~G~ay 389 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKL------------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFD-GRGNAY 389 (635)
T ss_pred ccceEECCCCCEEEEeCCC------------CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEEC-CCCCEE
Confidence 9999999999999998766 444444443221 1223331 123359999998 557899
Q ss_pred EEcCCCCeEEEEEe
Q psy17325 384 FADSKLDFIDFCNY 397 (461)
Q Consensus 384 ~~d~~~~~I~~~~~ 397 (461)
.+=.-...|.+.++
T Consensus 390 tslf~dsqv~kwn~ 403 (635)
T PRK02888 390 TTLFLDSQIVKWNI 403 (635)
T ss_pred EeEeecceeEEEeh
Confidence 87555567777776
No 106
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.12 E-value=1 Score=42.90 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=84.5
Q ss_pred ceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE--------EEecCCCCCceeEEEcCCCCceEEEEee
Q psy17325 141 QDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI--------VLAKDNITQPRGMMLDPSPGTRWLFWTD 212 (461)
Q Consensus 141 ~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~--------~l~~~~~~~p~~ia~d~~~g~~~ly~td 212 (461)
+....+|--....||+ ..+.++++++.-.-+...+.+-+... .+..++-=+-.|||++- | +--|+|-
T Consensus 95 r~~~~TGdidiHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~--g-~p~yVTa 169 (335)
T TIGR03032 95 RASYVTGDIDAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD--G-EPRYVTA 169 (335)
T ss_pred eeeeeccCcchhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC--C-eEEEEEE
Confidence 3333444334444566 57889999988777777776665532 22333334577999963 2 2567776
Q ss_pred cCCC--CcEEEEecC-CCCc-----EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEE
Q psy17325 213 WGEN--PRIERIGMD-GSNR-----STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYW 284 (461)
Q Consensus 213 ~~~~--~~I~~~~~d-G~~~-----~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw 284 (461)
.+.. ..-+|-... |... ..++.+++..|.+--. ..++||+.|...
T Consensus 170 ~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRW--hdgrLwvldsgt------------------------- 222 (335)
T TIGR03032 170 LSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRW--YQGKLWLLNSGR------------------------- 222 (335)
T ss_pred eeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcE--eCCeEEEEECCC-------------------------
Confidence 4332 222332221 1111 0122234545554433 356666666665
Q ss_pred EecCCCCcceeeeEEeCCCCceEEEEeC-CeeeeEEEeccCCeEEEeecC
Q psy17325 285 IDEGGNGVPLKIGKANMDGSNASILVSG-QLYEALALDLENGMLYYSTLK 333 (461)
Q Consensus 285 ~d~~~~~~~~~I~~~~~~g~~~~~l~~~-~~p~~iavd~~~~~lY~t~~~ 333 (461)
+++.+.+++....+++..- +.|+||+.. ++.++++-+.
T Consensus 223 ---------Gev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk 261 (335)
T TIGR03032 223 ---------GELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSK 261 (335)
T ss_pred ---------CEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEecc
Confidence 5688888874444444443 349999988 8888887654
No 107
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=96.10 E-value=0.004 Score=39.56 Aligned_cols=35 Identities=43% Similarity=1.063 Sum_probs=26.1
Q ss_pred CcceecCCcccC--ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 71 MNECEQPGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 71 ~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
+++|.....|.+ .|.+..++|.|.|++||. ++..|
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 566753346754 899999999999999996 34544
No 108
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.08 E-value=1.5 Score=42.40 Aligned_cols=265 Identities=16% Similarity=0.168 Sum_probs=121.9
Q ss_pred CeEEEEeCC----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec----CCC----CcEEEEecCCCC
Q psy17325 161 GHIYWLDSR----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW----GEN----PRIERIGMDGSN 228 (461)
Q Consensus 161 ~~ly~~d~~----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~----~~~----~~I~~~~~dG~~ 228 (461)
.++|+.|.. .+++.++|.+.....-.+..++ -..+++.|..+ .+|.++. +.. ..|...+.....
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk--~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~ 78 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGF--LGNVALSPDGK--TIYVAETFYSRGTRGERTDVVEIWDTQTLS 78 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEES--SEEEEE-TTSS--EEEEEEEEEEETTEEEEEEEEEEEETTTTE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeeccc--CCceeECCCCC--EEEEEEEEEeccccccceeEEEEEecCcCc
Confidence 456666642 3466666655544444444443 23477888877 8987751 111 233333433322
Q ss_pred c--EEEEecc-----cccceeEEeeccCCeeEEecCCC-ceeeecccceeeeecccee--eeEEEEEecCCC-Cc--cee
Q psy17325 229 R--STIISTK-----IYWPNGLTLDIATRRVYFADSKL-DFIDCKSLEIKTNVNYSTI--FRKLYWIDEGGN-GV--PLK 295 (461)
Q Consensus 229 ~--~~i~~~~-----~~~P~glavD~~~~~ly~~d~~~-~~i~~~~~~~~~~v~~~~~--~~~~yw~d~~~~-~~--~~~ 295 (461)
. +..+... +..++-+++-..++.+|+.+..- ..+.++++..++-+.-..+ --.+|-+..... .+ -++
T Consensus 79 ~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 79 PTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGS 158 (342)
T ss_dssp EEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSC
T ss_pred ccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCc
Confidence 1 2222221 23566778877789999877543 3445555544443311100 003443332211 00 024
Q ss_pred eeEEeCCCCceEEEEeCCe------e--eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCC-
Q psy17325 296 IGKANMDGSNASILVSGQL------Y--EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTK- 366 (461)
Q Consensus 296 I~~~~~~g~~~~~l~~~~~------p--~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~- 366 (461)
+..+.+|-........... | ..=+++..++.+||... ++.|+.+++.|...+..-.-.
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy-------------~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY-------------EGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT-------------TSEEEEEEETTSSEEEEEEEES
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec-------------CCEEEEEeccCCcccccCcccc
Confidence 5555555222221111111 1 01112223344444322 678999999888765543111
Q ss_pred -------CCC-cee---EEEecCCCeEEEEc----CC-----CCeEEEEEecCCCCeEEEEEccccce-eeccCCCCCcc
Q psy17325 367 -------IYW-PNG---LTLDIATRRVYFAD----SK-----LDFIDFCNYDGTGRQQVILIDLMVEF-TNDLMGDNGVP 425 (461)
Q Consensus 367 -------l~~-p~g---laiD~~~~~ly~~d----~~-----~~~I~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~~~~~ 425 (461)
-.| |.| +|++...++||+.= .+ ...|+.+|+ .-..++.-....... +..+.-+ ..
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~--~t~krv~Ri~l~~~~~Si~Vsqd--~~ 301 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL--KTHKRVARIPLEHPIDSIAVSQD--DK 301 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET--TTTEEEEEEEEEEEESEEEEESS--SS
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC--CCCeEEEEEeCCCccceEEEccC--CC
Confidence 122 544 89998999999861 11 126888888 344333222211111 1111111 12
Q ss_pred eEEEee--eCCEEEEEeCCCcee
Q psy17325 426 ALALDL--ENGMLYYSTEGAEFL 446 (461)
Q Consensus 426 ~~~l~~--~~~~lYwtd~~~~~i 446 (461)
|+-++. .++.||+-|..++..
T Consensus 302 P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 302 PLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp -EEEEEETTTTEEEEEETTT--E
T ss_pred cEEEEEcCCCCeEEEEeCcCCcE
Confidence 444443 456888888888755
No 109
>KOG4289|consensus
Probab=95.96 E-value=0.0054 Score=67.27 Aligned_cols=48 Identities=33% Similarity=0.950 Sum_probs=39.9
Q ss_pred CCCceEeCCCCCeecCCCCcee-cCcceecCCccc--CceeeccCCccccCCCCee
Q psy17325 48 PLGALCTCPPGEILSNDSVTCQ-DMNECEQPGYCS--QMCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 48 ~~~~~C~C~~G~~l~~~~~~C~-d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g~~ 100 (461)
.++..|.||+||. +..|+ .+++| ..+.|. ..|....|+|.|.|.+||.
T Consensus 1219 vnglrCrCPpGFT----gd~CeTeiDlC-Ys~pC~nng~C~srEggYtCeCrpg~t 1269 (2531)
T KOG4289|consen 1219 VNGLRCRCPPGFT----GDYCETEIDLC-YSGPCGNNGRCRSREGGYTCECRPGFT 1269 (2531)
T ss_pred cCceeEeCCCCCC----cccccchhHhh-hcCCCCCCCceEEecCceeEEecCCcc
Confidence 4789999999996 55886 57888 456785 4899999999999999994
No 110
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=95.83 E-value=0.0049 Score=38.54 Aligned_cols=34 Identities=38% Similarity=0.693 Sum_probs=21.3
Q ss_pred ccCCCCCCC--CCceeCCCCceEeCCCCCeecCCCCce
Q psy17325 33 CKHKFGLCS--NTCHPTPLGALCTCPPGEILSNDSVTC 68 (461)
Q Consensus 33 C~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C 68 (461)
|..++..|. ..|.++++++.|.|++||.. ++..|
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~G--dG~~C 36 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYTCTCKPGYEG--DGFFC 36 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEEEEE-CEEEC--CSTCE
T ss_pred CCCCCCCCCCCcEeecCCCCEEeECCCCCcc--CCcCC
Confidence 344455564 36888899999999999973 45444
No 111
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.59 E-value=2.8 Score=41.81 Aligned_cols=124 Identities=14% Similarity=0.242 Sum_probs=81.8
Q ss_pred CCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCccee
Q psy17325 216 NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLK 295 (461)
Q Consensus 216 ~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~ 295 (461)
...+...+.+|...+.+. ..+.....+++++.++.+.+++... .
T Consensus 381 gD~l~iyd~~~~e~kr~e-~~lg~I~av~vs~dGK~~vvaNdr~-----------------------------------e 424 (668)
T COG4946 381 GDKLGIYDKDGGEVKRIE-KDLGNIEAVKVSPDGKKVVVANDRF-----------------------------------E 424 (668)
T ss_pred CceEEEEecCCceEEEee-CCccceEEEEEcCCCcEEEEEcCce-----------------------------------E
Confidence 357777778877655444 4577788889988777777776543 5
Q ss_pred eeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeE
Q psy17325 296 IGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGL 373 (461)
Q Consensus 296 I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~gl 373 (461)
|++.+++..+.+++-.... ..++++.|..+.+=++=.. + |+ ...|..++|+|...-.+. +...+-.+=
T Consensus 425 l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~--g--y~-----tq~Iklydm~~~Kiy~vT-T~ta~DfsP 494 (668)
T COG4946 425 LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE--G--YY-----TQSIKLYDMDGGKIYDVT-TPTAYDFSP 494 (668)
T ss_pred EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc--c--ee-----eeeEEEEecCCCeEEEec-CCcccccCc
Confidence 7888888777777665433 6677777766644333221 1 11 346888899886544443 444445556
Q ss_pred EEecCCCeEEEE
Q psy17325 374 TLDIATRRVYFA 385 (461)
Q Consensus 374 aiD~~~~~ly~~ 385 (461)
|+|+++..||+.
T Consensus 495 aFD~d~ryLYfL 506 (668)
T COG4946 495 AFDPDGRYLYFL 506 (668)
T ss_pred ccCCCCcEEEEE
Confidence 899999999996
No 112
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.53 E-value=1.7 Score=43.19 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=88.4
Q ss_pred EEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEE
Q psy17325 165 WLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT 244 (461)
Q Consensus 165 ~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~gla 244 (461)
+.+...+.+.+.+.+|.....+ ..++.+..++++++... ++-++. .+..|+.++++..+.+.+-.+.-....+++
T Consensus 376 igt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK--~~vvaN--dr~el~vididngnv~~idkS~~~lItdf~ 450 (668)
T COG4946 376 IGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGK--KVVVAN--DRFELWVIDIDNGNVRLIDKSEYGLITDFD 450 (668)
T ss_pred EeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCc--EEEEEc--CceEEEEEEecCCCeeEecccccceeEEEE
Confidence 3334445778888887765544 35678899999998755 666665 567899999998888777766666677888
Q ss_pred eeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEecc
Q psy17325 245 LDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLE 323 (461)
Q Consensus 245 vD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~ 323 (461)
+.+.++.|-.+=...-.. ..|...+++|...--+..... -.+-|+||.
T Consensus 451 ~~~nsr~iAYafP~gy~t-------------------------------q~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d 499 (668)
T COG4946 451 WHPNSRWIAYAFPEGYYT-------------------------------QSIKLYDMDGGKIYDVTTPTAYDFSPAFDPD 499 (668)
T ss_pred EcCCceeEEEecCcceee-------------------------------eeEEEEecCCCeEEEecCCcccccCcccCCC
Confidence 887777665544422111 347777888765444443332 556689999
Q ss_pred CCeEEEee
Q psy17325 324 NGMLYYST 331 (461)
Q Consensus 324 ~~~lY~t~ 331 (461)
+++||+-.
T Consensus 500 ~ryLYfLs 507 (668)
T COG4946 500 GRYLYFLS 507 (668)
T ss_pred CcEEEEEe
Confidence 99999743
No 113
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.46 E-value=1.3 Score=43.21 Aligned_cols=172 Identities=18% Similarity=0.220 Sum_probs=93.2
Q ss_pred CCceeEEEcCCCCceEEEEeecCC---CCcEEEEecCCCC----cEEEEe-----cc--------cccceeEEeeccCCe
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGE---NPRIERIGMDGSN----RSTIIS-----TK--------IYWPNGLTLDIATRR 251 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~---~~~I~~~~~dG~~----~~~i~~-----~~--------~~~P~glavD~~~~~ 251 (461)
..-+||++++..+ +++-++|.+. ..++++..++... ...+.. .. ..-+.||++ ...+.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGS 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCCC
Confidence 4467888887544 2444556443 2457777766411 111111 10 115668899 56888
Q ss_pred eEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE-EeC----------Ce-----e
Q psy17325 252 VYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL-VSG----------QL-----Y 315 (461)
Q Consensus 252 ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l-~~~----------~~-----p 315 (461)
+||++..... .+....|.+.+.+|...+.+ +.. .. .
T Consensus 98 ~~is~E~~~~----------------------------~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~ 149 (326)
T PF13449_consen 98 FWISSEGGRT----------------------------GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGF 149 (326)
T ss_pred EEEEeCCccC----------------------------CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCe
Confidence 8888877610 01113577777777664433 111 11 8
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecC-------CCCceEEEeec--CCCeEEEe--eC------CCCCceeEEEecC
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWG-------ENPRIERIGMD--GSNRSTII--ST------KIYWPNGLTLDIA 378 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~-------~~~~I~~~~~d--G~~~~~l~--~~------~l~~p~glaiD~~ 378 (461)
++||+.|.++.||.+... -.+.|-. ...+|.+.+.. |.....++ .. ....+..|+.- .
T Consensus 150 E~la~~~dG~~l~~~~E~----~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~ 224 (326)
T PF13449_consen 150 EGLAVSPDGRTLFAAMES----PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-P 224 (326)
T ss_pred EEEEECCCCCEEEEEECc----cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-C
Confidence 899999988878887554 1111211 12456666654 32222221 11 23445555543 6
Q ss_pred CCeEEEEcCC-------CCeEEEEEec
Q psy17325 379 TRRVYFADSK-------LDFIDFCNYD 398 (461)
Q Consensus 379 ~~~ly~~d~~-------~~~I~~~~~~ 398 (461)
+++|++.+.. ..+|+.+++.
T Consensus 225 d~~lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 225 DGRLLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred CCcEEEEEccCCCCccceEEEEEEEcc
Confidence 6778888665 4578888873
No 114
>KOG4649|consensus
Probab=95.37 E-value=2.3 Score=39.28 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=72.9
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
-.-+|||+.+|++||-..-..+|+-. .++.+++ +++--.+| .||+.+.....+++....-++...
T Consensus 33 ~~~~avd~~sG~~~We~ilg~RiE~s--------a~vvgdf-----VV~GCy~g--~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILGVRIECS--------AIVVGDF-----VVLGCYSG--GLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ceEEEecCCCCcEEeehhhCceeeee--------eEEECCE-----EEEEEccC--cEEEEEecchhheeeeeehhhhcc
Confidence 34478999999999976655555432 1222222 67777778 899999665567776544433211
Q ss_pred EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~ 310 (461)
.-..|+.++.||...... ++|-.|..+. +.|++.+-.|+.
T Consensus 98 -----------~a~~d~~~glIycgshd~---------------------~~yalD~~~~---~cVykskcgG~~----- 137 (354)
T KOG4649|consen 98 -----------RAQCDFDGGLIYCGSHDG---------------------NFYALDPKTY---GCVYKSKCGGGT----- 137 (354)
T ss_pred -----------ceEEcCCCceEEEecCCC---------------------cEEEeccccc---ceEEecccCCce-----
Confidence 123466677777665543 3444444443 356665554442
Q ss_pred eCCeeeeEEEeccCCeEEEeecC
Q psy17325 311 SGQLYEALALDLENGMLYYSTLK 333 (461)
Q Consensus 311 ~~~~p~~iavd~~~~~lY~t~~~ 333 (461)
-.+-++++-.+.||++...
T Consensus 138 ----f~sP~i~~g~~sly~a~t~ 156 (354)
T KOG4649|consen 138 ----FVSPVIAPGDGSLYAAITA 156 (354)
T ss_pred ----eccceecCCCceEEEEecc
Confidence 1233567777888887664
No 115
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=2.5 Score=37.78 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=24.9
Q ss_pred CCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 366 KIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 366 ~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+..-++|||.|+..+++|++-..-..+.-+.+
T Consensus 227 ~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~ 258 (262)
T COG3823 227 NDNVLNGIAHDPQQDRFLITGKLWPLLFEVKL 258 (262)
T ss_pred ccccccceeecCcCCeEEEecCcCceeEEEEe
Confidence 45568999999999999999665556666655
No 116
>smart00181 EGF Epidermal growth factor-like domain.
Probab=94.83 E-value=0.032 Score=34.44 Aligned_cols=24 Identities=54% Similarity=1.025 Sum_probs=18.9
Q ss_pred CCCCC-CceeCCCCceEeCCCCCee
Q psy17325 38 GLCSN-TCHPTPLGALCTCPPGEIL 61 (461)
Q Consensus 38 ~~C~~-~C~~~~~~~~C~C~~G~~l 61 (461)
..|.+ .|.+..++|.|.|++||.+
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCcc
Confidence 45665 6888888899999999864
No 117
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=94.64 E-value=1.2 Score=46.28 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=46.3
Q ss_pred eeeEEEeccCCeEEEeecCceeeEE-Eee------cCCCCceEEEeecCC-------CeEEEe-----------------
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLF-WTD------WGENPRIERIGMDGS-------NRSTII----------------- 363 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~-~~d------~~~~~~I~~~~~dG~-------~~~~l~----------------- 363 (461)
|++|+++|.++.||++-+.....+- =.+ ....+.|+|...++. ....++
T Consensus 352 pEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~ 431 (524)
T PF05787_consen 352 PEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCD 431 (524)
T ss_pred ccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCccc
Confidence 9999999999999998766221000 000 012356888877654 222222
Q ss_pred eCCCCCceeEEEecCCCeEEEE-cCCCC
Q psy17325 364 STKIYWPNGLTLDIATRRVYFA-DSKLD 390 (461)
Q Consensus 364 ~~~l~~p~glaiD~~~~~ly~~-d~~~~ 390 (461)
...+..|.+|++|+ .++||++ |....
T Consensus 432 ~~~f~sPDNL~~d~-~G~LwI~eD~~~~ 458 (524)
T PF05787_consen 432 DNGFASPDNLAFDP-DGNLWIQEDGGGS 458 (524)
T ss_pred CCCcCCCCceEECC-CCCEEEEeCCCCC
Confidence 12377899999995 6778776 44443
No 118
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.60 E-value=4.7 Score=39.06 Aligned_cols=198 Identities=15% Similarity=0.199 Sum_probs=100.2
Q ss_pred EEcCccceeeeeeeecCCeEEEEeCC---------CCeEEEEeCCCCc--EEEEecCC-----CCCceeEEEcCCCCceE
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDSR---------LNRIEVCDENGTN--RIVLAKDN-----ITQPRGMMLDPSPGTRW 207 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~~---------~~~I~~~~~~G~~--~~~l~~~~-----~~~p~~ia~d~~~g~~~ 207 (461)
+..|+. ..+++.+.++.+|.++.- ++-|.+.|...-. .++.+... ...+.-+++-...+ +
T Consensus 33 i~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk--~ 108 (342)
T PF06433_consen 33 IDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGK--F 108 (342)
T ss_dssp EEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSS--E
T ss_pred eecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCc--E
Confidence 444443 236677778888877632 2345566655543 23334422 24566778877766 9
Q ss_pred EEEeecCCCCcEEEEecCCCCcEEEEecccccceeEE-eeccCCeeEEecCCCceeeecccc----ee--e-ee---ccc
Q psy17325 208 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT-LDIATRRVYFADSKLDFIDCKSLE----IK--T-NV---NYS 276 (461)
Q Consensus 208 ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~gla-vD~~~~~ly~~d~~~~~i~~~~~~----~~--~-~v---~~~ 276 (461)
||+.++.....|..+++.......-+.. |-..- +-..+++.+ +-=..+.+..+.++ .. . .+ .-+
T Consensus 109 ~~V~N~TPa~SVtVVDl~~~kvv~ei~~----PGC~~iyP~~~~~F~-~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~d 183 (342)
T PF06433_consen 109 LYVQNFTPATSVTVVDLAAKKVVGEIDT----PGCWLIYPSGNRGFS-MLCGDGSLLTVTLDADGKEAQKSTKVFDPDDD 183 (342)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEEG----TSEEEEEEEETTEEE-EEETTSCEEEEEETSTSSEEEEEEEESSTTTS
T ss_pred EEEEccCCCCeEEEEECCCCceeeeecC----CCEEEEEecCCCceE-EEecCCceEEEEECCCCCEeEeeccccCCCCc
Confidence 9999988778999999987544322221 21111 111122211 11111222222111 10 0 01 001
Q ss_pred eee---------eEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC----------e-ee---eEEEeccCCeEEEeecC
Q psy17325 277 TIF---------RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ----------L-YE---ALALDLENGMLYYSTLK 333 (461)
Q Consensus 277 ~~~---------~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~----------~-p~---~iavd~~~~~lY~t~~~ 333 (461)
.+| ..+||+.-.. .|+.+++.|...+....-. . |- .+|+++..++||+-...
T Consensus 184 p~f~~~~~~~~~~~~~F~Sy~G-----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~ 258 (342)
T PF06433_consen 184 PLFEHPAYSRDGGRLYFVSYEG-----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ 258 (342)
T ss_dssp -B-S--EEETTTTEEEEEBTTS-----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred ccccccceECCCCeEEEEecCC-----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence 111 1567765555 5888888888765543321 1 54 48999999999996432
Q ss_pred --------ceeeEEEeecCCCCceEEEeec
Q psy17325 334 --------CTRWLFWTDWGENPRIERIGMD 355 (461)
Q Consensus 334 --------~~~~l~~~d~~~~~~I~~~~~d 355 (461)
....+|..|.....+|.|..+.
T Consensus 259 g~~gsHKdpgteVWv~D~~t~krv~Ri~l~ 288 (342)
T PF06433_consen 259 GGEGSHKDPGTEVWVYDLKTHKRVARIPLE 288 (342)
T ss_dssp --TT-TTS-EEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCccCCceEEEEEECCCCeEEEEEeCC
Confidence 1234444455555555555554
No 119
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.16 E-value=3.6 Score=40.58 Aligned_cols=165 Identities=13% Similarity=0.170 Sum_probs=76.9
Q ss_pred CceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEE
Q psy17325 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLY 283 (461)
Q Consensus 204 g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~y 283 (461)
|+++||.++...+..++.++++....+.|....-....|..+.+.++.||+.....
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~------------------------ 102 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGR------------------------ 102 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTT------------------------
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCC------------------------
Confidence 45588888876678999999998776666553222223555556677776543222
Q ss_pred EEecCCCCcceeeeEEeCCCCceEEEEeCCe---eeeEE-EeccCCeEEE-eecCceeeEEEeec---------CCCCce
Q psy17325 284 WIDEGGNGVPLKIGKANMDGSNASILVSGQL---YEALA-LDLENGMLYY-STLKCTRWLFWTDW---------GENPRI 349 (461)
Q Consensus 284 w~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~---p~~ia-vd~~~~~lY~-t~~~~~~~l~~~d~---------~~~~~I 349 (461)
.+.+++++....++|..-.. ..+-. ++. .+.+++ .......+.--++| ....+|
T Consensus 103 -----------~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i 170 (386)
T PF14583_consen 103 -----------SLRRVDLDTLEERVVYEVPDDWKGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI 170 (386)
T ss_dssp -----------EEEEEETTT--EEEEEE--TTEEEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred -----------eEEEEECCcCcEEEEEECCcccccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence 36777877776666665432 33333 343 333332 21110111111222 124579
Q ss_pred EEEeecCCCeEEEeeCCCCCceeEEEecCCCe-EEEEcC-----CCCeEEEEEecCCCCeEEEE
Q psy17325 350 ERIGMDGSNRSTIISTKIYWPNGLTLDIATRR-VYFADS-----KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 350 ~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~-ly~~d~-----~~~~I~~~~~~g~g~~~~~~ 407 (461)
.++++.+.+.+++. ..-.|-.-+-..+.+.. |-++.. -..+|+.++. +|.+...+
T Consensus 171 ~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--dg~~~~~v 231 (386)
T PF14583_consen 171 FTIDLKTGERKVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--DGSNVKKV 231 (386)
T ss_dssp EEEETTT--EEEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--TS---EES
T ss_pred EEEECCCCceeEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--CCCcceee
Confidence 99999988888887 34344444555444433 334422 2458899998 45544433
No 120
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=93.97 E-value=0.033 Score=34.81 Aligned_cols=30 Identities=50% Similarity=1.050 Sum_probs=20.4
Q ss_pred CCcccC--ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 77 PGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 77 ~~~C~~--~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
++.|+. .|.+++++|.|.|.+||.. ++..|
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~G--dG~~C 36 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEG--DGFFC 36 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEEC--CSTCE
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCcc--CCcCC
Confidence 346753 8999999999999999963 45544
No 121
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=93.64 E-value=0.094 Score=32.62 Aligned_cols=29 Identities=38% Similarity=0.803 Sum_probs=20.5
Q ss_pred CcccCCCCCC--CCCceeCCCCceEeCCCCCe
Q psy17325 31 AECKHKFGLC--SNTCHPTPLGALCTCPPGEI 60 (461)
Q Consensus 31 ~~C~~~~~~C--~~~C~~~~~~~~C~C~~G~~ 60 (461)
++|... ..| ...|.+..++|.|.|++||.
T Consensus 3 ~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 3 DECASG-NPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred ccCCCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence 455431 235 34688888999999999985
No 122
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=93.57 E-value=0.71 Score=47.97 Aligned_cols=65 Identities=22% Similarity=0.400 Sum_probs=47.6
Q ss_pred EcCccceeeeeeeecCCeEEEEeCCCC-------------------eEEEEeCCCC-------cEEE-Eec---------
Q psy17325 145 VSGLDLVEGLAYDWIGGHIYWLDSRLN-------------------RIEVCDENGT-------NRIV-LAK--------- 188 (461)
Q Consensus 145 ~~g~~~p~~iavd~~~~~ly~~d~~~~-------------------~I~~~~~~G~-------~~~~-l~~--------- 188 (461)
.+.+.+||++++++.++.+|++-++.+ +|.+..+++. .-.. +..
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 457899999999999999999975544 8988887765 2222 222
Q ss_pred -------CCCCCceeEEEcCCCCceEEEEe-e
Q psy17325 189 -------DNITQPRGMMLDPSPGTRWLFWT-D 212 (461)
Q Consensus 189 -------~~~~~p~~ia~d~~~g~~~ly~t-d 212 (461)
..+..|..|++|+..+ ||+. |
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~~G~---LwI~eD 454 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDPDGN---LWIQED 454 (524)
T ss_pred ccCcccCCCcCCCCceEECCCCC---EEEEeC
Confidence 2367899999999744 5554 5
No 123
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=7.2 Score=36.80 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=37.5
Q ss_pred CCCCceeE---EEecCCCeEEEEcCCCCeEEEEEec-CCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeC
Q psy17325 366 KIYWPNGL---TLDIATRRVYFADSKLDFIDFCNYD-GTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTE 441 (461)
Q Consensus 366 ~l~~p~gl---aiD~~~~~ly~~d~~~~~I~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~ 441 (461)
+-..|.++ .+ .+++.|++|...+- -.++.. ..+.. + .+... . ...+..+|...++++|++|-
T Consensus 253 et~~p~~~s~v~V--s~~~~Yvadga~gl-~~idisnp~spf--l-~ss~~-----t---~g~~a~gi~ay~~y~yiadk 318 (370)
T COG5276 253 ETSNPVSISTVPV--SGEYAYVADGAKGL-PIIDISNPPSPF--L-SSSLD-----T---AGYQAAGIRAYGNYNYIADK 318 (370)
T ss_pred ccCCcccccceec--ccceeeeeccccCc-eeEeccCCCCCc--h-hcccc-----C---CCccccceEEecCeeEeccC
Confidence 44445554 66 89999999875432 222220 01211 1 11110 0 11235689999999999998
Q ss_pred CCcee
Q psy17325 442 GAEFL 446 (461)
Q Consensus 442 ~~~~i 446 (461)
+++.+
T Consensus 319 n~g~v 323 (370)
T COG5276 319 NTGAV 323 (370)
T ss_pred CceEE
Confidence 87665
No 124
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=7.4 Score=36.72 Aligned_cols=221 Identities=10% Similarity=0.080 Sum_probs=109.4
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEec-C--CCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec
Q psy17325 159 IGGHIYWLDSRLNRIEVCDENGTNRIVLAK-D--NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST 235 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~--~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~ 235 (461)
.++-.|++|..++ ..+++.......+|.. . .-.....+++-. + +-|++.|.. .+..++..-....+++..
T Consensus 137 sGn~aYVadlddg-fLivdvsdpssP~lagrya~~~~d~~~v~ISG--n--~AYvA~~d~--GL~ivDVSnp~sPvli~~ 209 (370)
T COG5276 137 SGNYAYVADLDDG-FLIVDVSDPSSPQLAGRYALPGGDTHDVAISG--N--YAYVAWRDG--GLTIVDVSNPHSPVLIGS 209 (370)
T ss_pred cCCEEEEeeccCc-EEEEECCCCCCceeeeeeccCCCCceeEEEec--C--eEEEEEeCC--CeEEEEccCCCCCeEEEE
Confidence 4778999998544 3445544333333322 1 111224566642 3 788887654 344444443333334433
Q ss_pred ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-
Q psy17325 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL- 314 (461)
Q Consensus 236 ~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~- 314 (461)
.-..|.--.+-...++.|.++...+ +...+.++...-.++..-.
T Consensus 210 ~n~g~g~~sv~vsdnr~y~vvy~eg-----------------------------------vlivd~s~~ssp~~~gsyet 254 (370)
T COG5276 210 YNTGPGTYSVSVSDNRAYLVVYDEG-----------------------------------VLIVDVSGPSSPTVFGSYET 254 (370)
T ss_pred EecCCceEEEEecCCeeEEEEcccc-----------------------------------eEEEecCCCCCceEeecccc
Confidence 2223333344445677787776653 4445556655444443222
Q ss_pred --eeeE-EEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCe
Q psy17325 315 --YEAL-ALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 391 (461)
Q Consensus 315 --p~~i-avd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~ 391 (461)
|.++ .+-..+.+.|+++... .-+.|--.+..+.....-..+.-.+..||.. .++.+|++|..++.
T Consensus 255 ~~p~~~s~v~Vs~~~~Yvadga~----------gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~ 322 (370)
T COG5276 255 SNPVSISTVPVSGEYAYVADGAK----------GLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGA 322 (370)
T ss_pred CCcccccceecccceeeeecccc----------CceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceE
Confidence 5554 1223367788876540 0122222222222222112234446778888 89999999988765
Q ss_pred EEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 392 IDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 392 I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
|.-+..- .--. ... +.... -..-++.+..+.+|.+|++.+..
T Consensus 323 vV~~s~~-s~m~---~~~---g~~ti------~~s~~v~~~~q~~y~~d~~~gl~ 364 (370)
T COG5276 323 VVDASPP-SMMD---KRP---GRPTI------GQSCDVSVDTQIIYSTDYNGGLS 364 (370)
T ss_pred EEeCCCh-hhcc---ccc---CcceE------eeecceEEEeeEEEEeecCCCEE
Confidence 5432220 0000 000 00000 01234555656999999988754
No 125
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=93.15 E-value=0.27 Score=37.48 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=26.0
Q ss_pred CCCCceEEEEeCCe-eeeEEEeccCCeEEEeecC
Q psy17325 301 MDGSNASILVSGQL-YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 301 ~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~ 333 (461)
.+|+..+++...-. |+||+++|.++.||+++..
T Consensus 41 yd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~ 74 (86)
T PF01731_consen 41 YDGKEVKVVASGFSFANGIAISPDKKYLYVASSL 74 (86)
T ss_pred EeCCEeEEeeccCCCCceEEEcCCCCEEEEEecc
Confidence 45666666665433 9999999999999999887
No 126
>smart00181 EGF Epidermal growth factor-like domain.
Probab=92.67 E-value=0.082 Score=32.52 Aligned_cols=24 Identities=58% Similarity=1.161 Sum_probs=20.3
Q ss_pred CcccC-ceeeccCCccccCCCCeee
Q psy17325 78 GYCSQ-MCTNTKGSYICSCNEGYVL 101 (461)
Q Consensus 78 ~~C~~-~C~~~~g~~~C~C~~g~~l 101 (461)
..|.+ .|.+..++|.|.|++||..
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCcc
Confidence 45666 8999999999999999965
No 127
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.56 E-value=1.5 Score=42.79 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=47.3
Q ss_pred CceeEEEecCCCeEEEEcCCC------CeEEEEEecCCCCeEEEEEcccccee------eccCCCCCcceEEEeeeCCEE
Q psy17325 369 WPNGLTLDIATRRVYFADSKL------DFIDFCNYDGTGRQQVILIDLMVEFT------NDLMGDNGVPALALDLENGML 436 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~------~~I~~~~~~g~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~l 436 (461)
.+-||++ ..++.+||++.+. .+|.+++. +|.....+.- ...+. .....-.+.+++++..++..|
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~--~G~~~~~~~v-P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l 161 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDL--DGRVIRRFPV-PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTL 161 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECC--CCcccceEcc-ccccccccCccccccCCCCeEEEEECCCCCEE
Confidence 4568999 5899999999999 99999999 5665433311 11110 112222356678888887778
Q ss_pred EEEeCCC
Q psy17325 437 YYSTEGA 443 (461)
Q Consensus 437 Ywtd~~~ 443 (461)
|..-+..
T Consensus 162 ~~~~E~~ 168 (326)
T PF13449_consen 162 FAAMESP 168 (326)
T ss_pred EEEECcc
Confidence 8876555
No 128
>KOG0291|consensus
Probab=92.54 E-value=16 Score=38.73 Aligned_cols=196 Identities=14% Similarity=0.049 Sum_probs=111.8
Q ss_pred cCCeEEEEeCCCCeEEEEeC-CCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccc
Q psy17325 159 IGGHIYWLDSRLNRIEVCDE-NGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKI 237 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~-~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~ 237 (461)
..++..++-+-+|++...|+ .....+++......+-.-+|+||.+- .++..+ .+.-.|+..++......-+++..-
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe--lV~AG~-~d~F~IfvWS~qTGqllDiLsGHE 478 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE--LVCAGA-QDSFEIFVWSVQTGQLLDILSGHE 478 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC--EEEeec-cceEEEEEEEeecCeeeehhcCCC
Confidence 34555556666666666664 34555566555556777899999855 555444 455789988887544444444433
Q ss_pred ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC--ceEEEEeCCee
Q psy17325 238 YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS--NASILVSGQLY 315 (461)
Q Consensus 238 ~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~--~~~~l~~~~~p 315 (461)
+-..+|++++.+..|+=..... +|.+-+.=++ ..+++-.....
T Consensus 479 gPVs~l~f~~~~~~LaS~SWDk-----------------------------------TVRiW~if~s~~~vEtl~i~sdv 523 (893)
T KOG0291|consen 479 GPVSGLSFSPDGSLLASGSWDK-----------------------------------TVRIWDIFSSSGTVETLEIRSDV 523 (893)
T ss_pred CcceeeEEccccCeEEeccccc-----------------------------------eEEEEEeeccCceeeeEeeccce
Confidence 4456899999888777555443 2333222222 33443332236
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC-------CeE-EEeeC---CCCCceeEEEecCCCeEEE
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS-------NRS-TIIST---KIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~-------~~~-~l~~~---~l~~p~glaiD~~~~~ly~ 384 (461)
-++++-|.++.|-++... +.+-||-- ...+++..+||. ... .+... .-+.-..|.+. .+|....
T Consensus 524 l~vsfrPdG~elaVaTld-gqItf~d~---~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~yS-aDG~~Il 598 (893)
T KOG0291|consen 524 LAVSFRPDGKELAVATLD-GQITFFDI---KEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYS-ADGKCIL 598 (893)
T ss_pred eEEEEcCCCCeEEEEEec-ceEEEEEh---hhceeeccccchhhccccccccceeehhhcccCCceEEEEEc-CCCCEEE
Confidence 677888888888887765 45556543 223444444442 111 12211 22233456665 4566666
Q ss_pred EcCCCCeEEEEEe
Q psy17325 385 ADSKLDFIDFCNY 397 (461)
Q Consensus 385 ~d~~~~~I~~~~~ 397 (461)
+-...+.|-.++.
T Consensus 599 AgG~sn~iCiY~v 611 (893)
T KOG0291|consen 599 AGGESNSICIYDV 611 (893)
T ss_pred ecCCcccEEEEEC
Confidence 6666666766666
No 129
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=92.41 E-value=0.055 Score=32.82 Aligned_cols=18 Identities=50% Similarity=1.064 Sum_probs=15.2
Q ss_pred CceeCC-CCceEeCCCCCe
Q psy17325 43 TCHPTP-LGALCTCPPGEI 60 (461)
Q Consensus 43 ~C~~~~-~~~~C~C~~G~~ 60 (461)
.|+... ++|.|.|++||.
T Consensus 11 ~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 11 TCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp EEEEESTSEEEEEEBTTEE
T ss_pred EEEeCCCCCEEeECCCCCc
Confidence 688888 888999999985
No 130
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.27 E-value=0.78 Score=29.22 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=29.1
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEc
Q psy17325 159 IGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLD 200 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d 200 (461)
.++.||+++...+.|.++++.......-+..+ ..|++|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 36789999999999999997544433223332 569998874
No 131
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=92.23 E-value=0.11 Score=32.36 Aligned_cols=30 Identities=47% Similarity=1.049 Sum_probs=22.1
Q ss_pred CcceecCCcc--cCceeeccCCccccCCCCee
Q psy17325 71 MNECEQPGYC--SQMCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 71 ~~eC~~~~~C--~~~C~~~~g~~~C~C~~g~~ 100 (461)
+++|.....| .+.|.+..++|.|.|+.||.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 4556432456 35799999999999999985
No 132
>KOG0279|consensus
Probab=92.20 E-value=10 Score=35.46 Aligned_cols=194 Identities=10% Similarity=0.092 Sum_probs=118.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
...++++. ..++.+++-+.++.+...|+.+...+..+.+.-...-++|+.+.+. . .++- .....|...+.-|...
T Consensus 65 ~v~dv~~s-~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~--q-ivSG-SrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 65 FVSDVVLS-SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR--Q-IVSG-SRDKTIKLWNTLGVCK 139 (315)
T ss_pred EecceEEc-cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc--e-eecC-CCcceeeeeeecccEE
Confidence 34556665 3567777778888999999988655555554445678999998866 4 4444 2336777777777666
Q ss_pred EEEEecc-cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 230 STIISTK-IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 230 ~~i~~~~-~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
-++.... -.+.+-+.+.|.+...|++...-+ +.+.+-++++-..+.
T Consensus 140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D---------------------------------ktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWD---------------------------------KTVKVWNLRNCQLRT 186 (315)
T ss_pred EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC---------------------------------ceEEEEccCCcchhh
Confidence 6665554 568888999988777777766554 346666777665443
Q ss_pred EEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 309 LVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 309 l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
-+...- .+.+++.|++- |.-+ -|..+.++--+++-+....-. ....-.+.|++ .-++.+.+-
T Consensus 187 ~~~gh~~~v~t~~vSpDGs-lcas------------Ggkdg~~~LwdL~~~k~lysl-~a~~~v~sl~f--spnrywL~~ 250 (315)
T KOG0279|consen 187 TFIGHSGYVNTVTVSPDGS-LCAS------------GGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCF--SPNRYWLCA 250 (315)
T ss_pred ccccccccEEEEEECCCCC-EEec------------CCCCceEEEEEccCCceeEec-cCCCeEeeEEe--cCCceeEee
Confidence 332222 77888887543 4332 123556666666543332222 34445667777 334444443
Q ss_pred CCCCeEEEEEe
Q psy17325 387 SKLDFIDFCNY 397 (461)
Q Consensus 387 ~~~~~I~~~~~ 397 (461)
+....|...++
T Consensus 251 at~~sIkIwdl 261 (315)
T KOG0279|consen 251 ATATSIKIWDL 261 (315)
T ss_pred ccCCceEEEec
Confidence 44445666666
No 133
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=91.96 E-value=8.6 Score=35.49 Aligned_cols=91 Identities=16% Similarity=0.294 Sum_probs=52.6
Q ss_pred eCCCCeEEEEeCCCCc--EEEE------ecCCCCCceeEEE--cCCCCceEEEEeecCCCCcEEEEec----CCCCcEEE
Q psy17325 167 DSRLNRIEVCDENGTN--RIVL------AKDNITQPRGMML--DPSPGTRWLFWTDWGENPRIERIGM----DGSNRSTI 232 (461)
Q Consensus 167 d~~~~~I~~~~~~G~~--~~~l------~~~~~~~p~~ia~--d~~~g~~~ly~td~~~~~~I~~~~~----dG~~~~~i 232 (461)
|...+.|.....++.. .+.+ ...++..|.|+++ ++.+|.=++|+++ ...-|....+ +|..+..+
T Consensus 120 dR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~--~qG~~~Qy~l~d~gnGkv~~k~ 197 (364)
T COG4247 120 DRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR--RQGDIAQYKLIDQGNGKVGTKL 197 (364)
T ss_pred cccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec--CCCceeEEEEEecCCceEccee
Confidence 3345556555544433 2222 2345678999999 5565644566665 2245555554 23333333
Q ss_pred Eec-c-cccceeEEeeccCCeeEEecCCC
Q psy17325 233 IST-K-IYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 233 ~~~-~-~~~P~glavD~~~~~ly~~d~~~ 259 (461)
+.. . -.+-.|+..|-..+.||+++..-
T Consensus 198 vR~fk~~tQTEG~VaDdEtG~LYIaeEdv 226 (364)
T COG4247 198 VRQFKIPTQTEGMVADDETGFLYIAEEDV 226 (364)
T ss_pred eEeeecCCcccceeeccccceEEEeeccc
Confidence 332 1 12457999999999999998764
No 134
>KOG0291|consensus
Probab=91.86 E-value=20 Score=38.16 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=77.2
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
+.....+++.+ .+.+..|-..+++|.+.+.....+.+-..+.-....++.+... ...+..++|||+
T Consensus 350 ~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~-------------g~~llssSLDGt 415 (893)
T KOG0291|consen 350 SDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR-------------GNVLLSSSLDGT 415 (893)
T ss_pred ccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEec-------------CCEEEEeecCCe
Confidence 34455677764 4556677788888888888777766665543333333333332 235566667776
Q ss_pred Cc----------EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeee
Q psy17325 228 NR----------STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIG 297 (461)
Q Consensus 228 ~~----------~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~ 297 (461)
.| +++....-.+-.-+|+|+.+..+...+... -.|+
T Consensus 416 VRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~----------------------------------F~If 461 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS----------------------------------FEIF 461 (893)
T ss_pred EEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce----------------------------------EEEE
Confidence 54 333333333556799998655554444333 2466
Q ss_pred EEeCCCCceEEEEeCCe--eeeEEEeccCCeEE
Q psy17325 298 KANMDGSNASILVSGQL--YEALALDLENGMLY 328 (461)
Q Consensus 298 ~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY 328 (461)
+..+..+...-++.+.. ..+|+++|.+..|+
T Consensus 462 vWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 462 VWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred EEEeecCeeeehhcCCCCcceeeEEccccCeEE
Confidence 65554333333333333 78899999877665
No 135
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.81 E-value=16 Score=37.02 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=68.2
Q ss_pred eEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCe
Q psy17325 172 RIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRR 251 (461)
Q Consensus 172 ~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ 251 (461)
+|.+.+++...+..++... ..-...++-|... ..+|..+-..+..|+.++++|+....+... ...-..=.+-+.+++
T Consensus 219 ~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~-~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~~Ps~spdG~~ 295 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGS-KLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGINTSPSWSPDGSK 295 (425)
T ss_pred eEEEEeccCCccceeeccC-CccCCccCCCCCC-EEEEEECCCCCccEEEEcCCCCcceecccC-CccccCccCCCCCCE
Confidence 5777777766666665522 1222334555533 234444434458999999999886554322 111112234555677
Q ss_pred eEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEe
Q psy17325 252 VYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYS 330 (461)
Q Consensus 252 ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t 330 (461)
|+++....++ ..|++.+++|...+.+..... ...-.+.|.+++|-+.
T Consensus 296 ivf~Sdr~G~--------------------------------p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 296 IVFTSDRGGR--------------------------------PQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred EEEEeCCCCC--------------------------------cceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEE
Confidence 7766444432 468999999988755544332 2233445555554443
No 136
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=91.72 E-value=0.2 Score=30.56 Aligned_cols=20 Identities=45% Similarity=0.838 Sum_probs=16.2
Q ss_pred CCceeCCCCceEeCCCCCee
Q psy17325 42 NTCHPTPLGALCTCPPGEIL 61 (461)
Q Consensus 42 ~~C~~~~~~~~C~C~~G~~l 61 (461)
..|.+.++++.|.|+.||..
T Consensus 12 ~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 12 GTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CEEecCCCCeEeECCCCCcc
Confidence 46888888899999999863
No 137
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=91.54 E-value=0.14 Score=44.36 Aligned_cols=64 Identities=28% Similarity=0.685 Sum_probs=43.7
Q ss_pred ceeCCCCceEeCCCCCeecCCCCceecCcceec----CCcccC--ceeecc-----CCccccCCCCeeeeCCCCceee
Q psy17325 44 CHPTPLGALCTCPPGEILSNDSVTCQDMNECEQ----PGYCSQ--MCTNTK-----GSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 44 C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~----~~~C~~--~C~~~~-----g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
...+.+.|.|.|.+||.+. ...+|+...+|.. ...|.. .|.+.+ ..|.|.|.+||.+..+ .|++
T Consensus 13 LiQMSNHfEC~Cnegfvl~-~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~--vCvp 87 (197)
T PF06247_consen 13 LIQMSNHFECKCNEGFVLK-NENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG--VCVP 87 (197)
T ss_dssp EEEESSEEEEEESTTEEEE-ETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS--SEEE
T ss_pred EEEccCceEEEcCCCcEEc-cccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC--eEch
Confidence 5667888999999999885 4679999999963 235754 787665 5789999999998743 4643
No 138
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.02 E-value=22 Score=37.17 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=28.4
Q ss_pred eeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe
Q psy17325 154 LAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT 211 (461)
Q Consensus 154 iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t 211 (461)
+++|...+.|||--.+-.- ..+..+ ...++..-.=+|||..+| .+-|.
T Consensus 239 ~s~D~~~~lvy~~tGnp~p-----~~~~~r---~gdnl~~~s~vAld~~TG--~~~W~ 286 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSP-----WNSHLR---PGDNLYTSSIVARDPDTG--KIKWH 286 (527)
T ss_pred eeEcCCCCeEEEeCCCCCC-----CCCCCC---CCCCccceeEEEEccccC--CEEEe
Confidence 5888888888886543111 122221 112233345589999999 88776
No 139
>KOG1217|consensus
Probab=90.40 E-value=0.8 Score=46.86 Aligned_cols=60 Identities=35% Similarity=0.728 Sum_probs=38.7
Q ss_pred CCceeCCCCceEeCCCCCeecCCCCceecCcceecCCccc--CceeeccCCccccCCCCeeee
Q psy17325 42 NTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCS--QMCTNTKGSYICSCNEGYVLE 102 (461)
Q Consensus 42 ~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g~~l~ 102 (461)
..|.+..+++.|.|++||..... ..|.++++|.....|. ..|.+..+.|.|.|++||...
T Consensus 243 ~~c~~~~~~~~C~~~~g~~~~~~-~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~ 304 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPEGYTGDAC-VTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGR 304 (487)
T ss_pred CcccccCCceeeeCCCCcccccc-ceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCC
Confidence 34666666677777777754221 3566777776432254 378888777888888888644
No 140
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=90.11 E-value=0.13 Score=44.67 Aligned_cols=20 Identities=35% Similarity=0.851 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy17325 6 VNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 6 i~~~~~Cd~~~dC~dg~de~ 25 (461)
|+.+.+.|++.||+|||||.
T Consensus 48 I~~~~iNDdyCDC~DGSDEP 67 (176)
T PF12999_consen 48 IPFSQINDDYCDCPDGSDEP 67 (176)
T ss_pred ecHHHccCcceeCCCCCCcc
Confidence 67788899999999999994
No 141
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.10 E-value=29 Score=36.90 Aligned_cols=188 Identities=18% Similarity=0.159 Sum_probs=95.6
Q ss_pred ceeeeeeeecCCeEEEEe-------CCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC--------
Q psy17325 150 LVEGLAYDWIGGHIYWLD-------SRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-------- 214 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d-------~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-------- 214 (461)
.+...++.+.++.+.++. ....+|.+.+..|..+...-...+..| .++|..+ .|++..-+
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~P---sWspDG~--~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRP---SWSLDAD--AVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCc---eECCCCC--ceEEEecCcceEEEec
Confidence 456677777777766655 223478888876665443322233344 5777644 55554212
Q ss_pred --CCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCc
Q psy17325 215 --ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGV 292 (461)
Q Consensus 215 --~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~ 292 (461)
....|+...+++..... .--..+..|++.+.+.+|.+.-. ++++.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~--g~v~V---------------------------- 472 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG--GKVYL---------------------------- 472 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC--CEEEE----------------------------
Confidence 22455555555543322 11124778888888888877553 22221
Q ss_pred ceeeeEEeCCCCceEEE----EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCC
Q psy17325 293 PLKIGKANMDGSNASIL----VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKI 367 (461)
Q Consensus 293 ~~~I~~~~~~g~~~~~l----~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l 367 (461)
..|.+ .-+|. .++. +...+ .....++ |.... . |+....+....++++.+||...+.+...++
T Consensus 473 -a~Vvr-~~~G~-~~l~~~~~l~~~l~~~~~~l~-------W~~~~--~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~ 539 (591)
T PRK13616 473 -AVVEQ-TEDGQ-YALTNPREVGPGLGDTAVSLD-------WRTGD--S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNL 539 (591)
T ss_pred -EEEEe-CCCCc-eeecccEEeecccCCccccce-------EecCC--E-EEEEecCCCCceEEEecCCccccccCCCCc
Confidence 11222 22333 2220 11111 0112233 33322 1 222222345669999999998776443444
Q ss_pred CCceeEEEecCCCeEEEEcCCC
Q psy17325 368 YWPNGLTLDIATRRVYFADSKL 389 (461)
Q Consensus 368 ~~p~glaiD~~~~~ly~~d~~~ 389 (461)
..| ..+|....+.||++|...
T Consensus 540 ~~~-v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 540 SAP-VVAVAASPSTVYVTDARA 560 (591)
T ss_pred cCc-eEEEecCCceEEEEcCCc
Confidence 433 355544557899998754
No 142
>KOG1217|consensus
Probab=89.35 E-value=1.1 Score=45.69 Aligned_cols=102 Identities=37% Similarity=0.688 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCCCCCCCC--CcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCC-----CceecC-----------
Q psy17325 12 CDGKTDCPNGADEGPGCDL--AECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDS-----VTCQDM----------- 71 (461)
Q Consensus 12 Cd~~~dC~dg~de~~~C~~--~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~-----~~C~d~----------- 71 (461)
+.-...|..|+.. ..|.. ++|......|.+ .|.+..++|.|.|++||...... ..|.+.
T Consensus 150 ~~~~c~C~~g~~~-~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~ 228 (487)
T KOG1217|consen 150 GPFRCSCTEGYEG-EPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARG 228 (487)
T ss_pred CceeeeeCCCccc-ccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCC
Confidence 3444567777654 34432 578755655654 69999999999999999754322 234332
Q ss_pred ccee-cCCccc---CceeeccCCccccCCCCeeeeCCCCceeeccccc
Q psy17325 72 NECE-QPGYCS---QMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 72 ~eC~-~~~~C~---~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
..|. ....|. ..|.+..+++.|.|++||....- ..|.+++++.
T Consensus 229 ~~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~-~~~~~~~~C~ 275 (487)
T KOG1217|consen 229 PECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDAC-VTCVDVDSCA 275 (487)
T ss_pred CCcccccccccCCCCcccccCCceeeeCCCCcccccc-ceeeeccccC
Confidence 2222 111232 67888999999999999976531 2344444443
No 143
>KOG0318|consensus
Probab=88.80 E-value=30 Score=35.30 Aligned_cols=209 Identities=10% Similarity=0.105 Sum_probs=106.2
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-CCCcEEEEecccccceeEEeecc
Q psy17325 170 LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-GSNRSTIISTKIYWPNGLTLDIA 248 (461)
Q Consensus 170 ~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-G~~~~~i~~~~~~~P~glavD~~ 248 (461)
.+.|...+++-.....++.+......+|++.+.+. +||-.+ ....|..-+.. |..-+......-....+|+...
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~--~i~Sgs--yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~- 373 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK--TIYSGS--YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE- 373 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCC--EEEeec--cCceEEEEecCCccccccccccccceEEEEeecC-
Confidence 45555555443334444555556788899998866 888665 23455554443 3332222222334567777763
Q ss_pred CCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC--CCceEEEEeCCe-eeeEEEeccCC
Q psy17325 249 TRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD--GSNASILVSGQL-YEALALDLENG 325 (461)
Q Consensus 249 ~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~--g~~~~~l~~~~~-p~~iavd~~~~ 325 (461)
.+.||-.-.. + ++.+..+. |-....++..+. |.++|+.+.++
T Consensus 374 ~~~~~t~g~D-d----------------------------------~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 374 SGELFTIGWD-D----------------------------------TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG 418 (603)
T ss_pred CCcEEEEecC-C----------------------------------eEEEEecccCcccccceeecCCCceeEEEcCCCC
Confidence 3555533222 1 23444332 222233333344 99999998777
Q ss_pred eEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEE
Q psy17325 326 MLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 326 ~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~ 405 (461)
.+.++-.. .|.-.. +......+ .-...|.++|+.+....+-+- ...++|....+.|+.....
T Consensus 419 ~avv~~~~--------------~iv~l~--~~~~~~~~-~~~y~~s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee 480 (603)
T KOG0318|consen 419 TAVVACIS--------------DIVLLQ--DQTKVSSI-PIGYESSAVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEE 480 (603)
T ss_pred EEEEEecC--------------cEEEEe--cCCcceee-ccccccceEEEcCCCCEEEEe-cccceEEEEEecCCcccce
Confidence 66665433 121111 00011111 233468999998665555554 4456788888844332222
Q ss_pred -EEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 406 -ILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 406 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
+..+...... .++.++++.+|-.+|....++
T Consensus 481 ~~~~~h~a~iT----------~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 481 AKLLEHRAAIT----------DVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred eeeecccCCce----------EEEECCCCcEEEEeccCCcEE
Confidence 2222111111 344555566676677666655
No 144
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=88.29 E-value=21 Score=39.12 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=55.9
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEE-ecCCCCCceeEEEcCCCCceEEEE-eecCC---CCcEEEEecC--CCCcEEE
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRIVL-AKDNITQPRGMMLDPSPGTRWLFW-TDWGE---NPRIERIGMD--GSNRSTI 232 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~~l-~~~~~~~p~~ia~d~~~g~~~ly~-td~~~---~~~I~~~~~d--G~~~~~i 232 (461)
++-+|+.+. .++|.++|.+|...+++ +.... ....-++-|... +|-+ +.+.. .+.|++-+|+ |+....|
T Consensus 319 tkiAfv~~~-~~~L~~~D~dG~n~~~ve~~~~~-~i~sP~~SPDG~--~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl 394 (912)
T TIGR02171 319 AKLAFRNDV-TGNLAYIDYTKGASRAVEIEDTI-SVYHPDISPDGK--KVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL 394 (912)
T ss_pred eeEEEEEcC-CCeEEEEecCCCCceEEEecCCC-ceecCcCCCCCC--EEEEEEeecCCCCCceEEEEehhccCCCceEe
Confidence 566788774 35999999999887776 44321 112234556544 5444 54333 5779988887 4444444
Q ss_pred EecccccceeEEee-ccCCeeEEecCCCce
Q psy17325 233 ISTKIYWPNGLTLD-IATRRVYFADSKLDF 261 (461)
Q Consensus 233 ~~~~~~~P~glavD-~~~~~ly~~d~~~~~ 261 (461)
-.++..-|.==.+. -.+--+|++|..++.
T Consensus 395 ~ve~aaiprwrv~e~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 395 PVENAAIPRWRVLENGDTVIVYVSDASNNK 424 (912)
T ss_pred ecccccccceEecCCCCeEEEEEcCCCCCc
Confidence 44444445433332 112346888877643
No 145
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=87.93 E-value=0.35 Score=29.37 Aligned_cols=20 Identities=50% Similarity=1.006 Sum_probs=17.2
Q ss_pred CceeeccCCccccCCCCeee
Q psy17325 82 QMCTNTKGSYICSCNEGYVL 101 (461)
Q Consensus 82 ~~C~~~~g~~~C~C~~g~~l 101 (461)
..|.+..++|.|.|+.||..
T Consensus 12 ~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 12 GTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CEEecCCCCeEeECCCCCcc
Confidence 57888889999999999853
No 146
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=21 Score=32.05 Aligned_cols=110 Identities=18% Similarity=0.056 Sum_probs=57.6
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEE--EeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEE
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIER--IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 393 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~--~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~ 393 (461)
.||+-| +.+|.-+|.. .+|+|-|-..-..+.+ +..+|.-.. .-+-|.. .+|.||--=+.+.+|.
T Consensus 134 WgLt~d--~~~LimsdGs--atL~frdP~tfa~~~~v~VT~~g~pv~--------~LNELE~--VdG~lyANVw~t~~I~ 199 (262)
T COG3823 134 WGLTSD--DKNLIMSDGS--ATLQFRDPKTFAELDTVQVTDDGVPVS--------KLNELEW--VDGELYANVWQTTRIA 199 (262)
T ss_pred eeeecC--CcceEeeCCc--eEEEecCHHHhhhcceEEEEECCeecc--------cccceee--eccEEEEeeeeecceE
Confidence 345444 5556555543 5677765442222222 223443222 2233443 6788887778889999
Q ss_pred EEEecCCCCeEEEEEccccceeeccCCC--CCcceEEEeeeCCEEEEEe
Q psy17325 394 FCNYDGTGRQQVILIDLMVEFTNDLMGD--NGVPALALDLENGMLYYST 440 (461)
Q Consensus 394 ~~~~~g~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~lYwtd 440 (461)
|++.+ +|+....+.-+.-.......+. +...++|-....+++|+|-
T Consensus 200 rI~p~-sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 200 RIDPD-SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEcCC-CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 99995 7776544432111111111122 2334555555677999984
No 147
>PRK13616 lipoprotein LpqB; Provisional
Probab=86.77 E-value=47 Score=35.32 Aligned_cols=200 Identities=11% Similarity=0.045 Sum_probs=100.2
Q ss_pred CCceeEEEcCCCCceEEEEeec------CCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeec
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDW------GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCK 265 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~------~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~ 265 (461)
..+...++.|... .+.++.. .....|+.+...|..+. +.... .-..-.+++.++.|+++......
T Consensus 350 ~~vsspaiSpdG~--~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~-lt~g~--~~t~PsWspDG~~lw~v~dg~~~---- 420 (591)
T PRK13616 350 GNITSAALSRSGR--QVAAVVTLGRGAPDPASSLWVGPLGGVAVQ-VLEGH--SLTRPSWSLDADAVWVVVDGNTV---- 420 (591)
T ss_pred cCcccceECCCCC--EEEEEEeecCCCCCcceEEEEEeCCCccee-eecCC--CCCCceECCCCCceEEEecCcce----
Confidence 4577888988754 5444431 12357888887665533 33221 12334467766777776433211
Q ss_pred ccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCC
Q psy17325 266 SLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGE 345 (461)
Q Consensus 266 ~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~ 345 (461)
.|-.+.... +.|++..+++...+. .....+..+.+.|.+.+|.+.-.
T Consensus 421 ----------------~~v~~~~~~---gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~------------- 467 (591)
T PRK13616 421 ----------------VRVIRDPAT---GQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIG------------- 467 (591)
T ss_pred ----------------EEEeccCCC---ceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEEC-------------
Confidence 111111111 356666666654332 11111677777777777665432
Q ss_pred CCceEEE---eecCCCeEE-----EeeCCCCC-ceeEEEecCCCeEEEEcCC-CCeEEEEEecCCCCeEEEEEcccccee
Q psy17325 346 NPRIERI---GMDGSNRST-----IISTKIYW-PNGLTLDIATRRVYFADSK-LDFIDFCNYDGTGRQQVILIDLMVEFT 415 (461)
Q Consensus 346 ~~~I~~~---~~dG~~~~~-----l~~~~l~~-p~glaiD~~~~~ly~~d~~-~~~I~~~~~~g~g~~~~~~~~~~~~~~ 415 (461)
++|+.+ ..++...+. +. ..+.. +..++.- .++.|++.-.. ...++++.+| |.....+.. ..+.
T Consensus 468 -g~v~Va~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~l~W~-~~~~L~V~~~~~~~~v~~v~vD--G~~~~~~~~--~n~~ 540 (591)
T PRK13616 468 -GKVYLAVVEQTEDGQYALTNPREVG-PGLGDTAVSLDWR-TGDSLVVGRSDPEHPVWYVNLD--GSNSDALPS--RNLS 540 (591)
T ss_pred -CEEEEEEEEeCCCCceeecccEEee-cccCCccccceEe-cCCEEEEEecCCCCceEEEecC--CccccccCC--CCcc
Confidence 244442 222222222 22 34443 4555553 45567765333 3458888994 554332111 1111
Q ss_pred eccCCCCCcceEEEeeeCCEEEEEeCCCceeecc
Q psy17325 416 NDLMGDNGVPALALDLENGMLYYSTEGAEFLKTP 449 (461)
Q Consensus 416 ~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~~ 449 (461)
.+..+|+-..+.||++|... .++.+
T Consensus 541 --------~~v~~vaa~~~~iyv~~~~g-~~~l~ 565 (591)
T PRK13616 541 --------APVVAVAASPSTVYVTDARA-VLQLP 565 (591)
T ss_pred --------CceEEEecCCceEEEEcCCc-eEEec
Confidence 22456777777899997544 44444
No 148
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=86.74 E-value=34 Score=33.66 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=46.1
Q ss_pred eeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCc-eeEEEecCCCeEEEEcC----CCCeEEEEEecCC-CCeEEEE
Q psy17325 336 RWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP-NGLTLDIATRRVYFADS----KLDFIDFCNYDGT-GRQQVIL 407 (461)
Q Consensus 336 ~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p-~glaiD~~~~~ly~~d~----~~~~I~~~~~~g~-g~~~~~~ 407 (461)
.+++.++...-.+|+..+.+|...+.|. .+--.. .-+.+|..++.||++-. ....++++++ + +...+.+
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~~~~~lT-~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~--~~~~~~~~L 323 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGGKPRQLT-SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL--DSGGEPKCL 323 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET--TETTEEEES
T ss_pred EEEEEEEcCCCcEEEEEcccccceeccc-cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe--CCCCCeEec
Confidence 4555666434568999999998866544 222223 34788989999999844 4568999999 5 5554433
No 149
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=86.35 E-value=0.85 Score=27.66 Aligned_cols=23 Identities=39% Similarity=1.011 Sum_probs=14.1
Q ss_pred CCCCceeCCCCceEeCCCCCeecC
Q psy17325 40 CSNTCHPTPLGALCTCPPGEILSN 63 (461)
Q Consensus 40 C~~~C~~~~~~~~C~C~~G~~l~~ 63 (461)
|...|..... ..|.||.||.+..
T Consensus 8 CpA~CDpn~~-~~C~CPeGyIlde 30 (34)
T PF09064_consen 8 CPADCDPNSP-GQCFCPEGYILDE 30 (34)
T ss_pred CCCccCCCCC-CceeCCCceEecC
Confidence 4444543222 4799999998744
No 150
>KOG4441|consensus
Probab=86.15 E-value=50 Score=35.00 Aligned_cols=192 Identities=10% Similarity=0.063 Sum_probs=107.1
Q ss_pred eEEEcCCCCceEEEEeecCCC------CcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce
Q psy17325 196 GMMLDPSPGTRWLFWTDWGEN------PRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI 269 (461)
Q Consensus 196 ~ia~d~~~g~~~ly~td~~~~------~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~ 269 (461)
++++- +| +||++- |.+ ..+++.+........+..-.. .=.++++-..++.||..-...+.-.
T Consensus 327 ~~~~~--~~--~lYv~G-G~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~~~v~~l~g~iYavGG~dg~~~------ 394 (571)
T KOG4441|consen 327 GVAVL--NG--KLYVVG-GYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KRSDFGVAVLDGKLYAVGGFDGEKS------ 394 (571)
T ss_pred cEEEE--CC--EEEEEc-cccCCCcccceEEEecCCCCceeccCCccC-ccccceeEEECCEEEEEeccccccc------
Confidence 44443 45 899885 333 455666665544433221111 1123444556788887765442211
Q ss_pred eeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecC-CCC
Q psy17325 270 KTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWG-ENP 347 (461)
Q Consensus 270 ~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~ 347 (461)
...|++.++....-+.+..... -.+.++-..+|+||..-.. .... .-.
T Consensus 395 -----------------------l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~-------~~~~~~l~ 444 (571)
T KOG4441|consen 395 -----------------------LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG-------DGSSNCLN 444 (571)
T ss_pred -----------------------cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc-------CCCccccc
Confidence 1357888777776665554333 3455666679999987442 0000 124
Q ss_pred ceEEEeecCCCeEEEee-CCCCCceeEEEecCCCeEEEEcCC-----CCeEEEEEecCCCCeEEEEEccccceeeccCCC
Q psy17325 348 RIERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADSK-----LDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGD 421 (461)
Q Consensus 348 ~I~~~~~dG~~~~~l~~-~~l~~p~glaiD~~~~~ly~~d~~-----~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~ 421 (461)
.+++.+.....-+.+.. ..-..-.|+++ .+++||++-.. ...|++.++ .......+........
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp--~~~~W~~v~~m~~~rs------ 514 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDP--ETNQWTMVAPMTSPRS------ 514 (571)
T ss_pred eEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcC--CCCceeEcccCccccc------
Confidence 67777776655554431 11222345666 89999998432 345888888 4544444432222222
Q ss_pred CCcceEEEeeeCCEEEEEeCCC
Q psy17325 422 NGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 422 ~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
..++++.++.||+.-.-.
T Consensus 515 ----~~g~~~~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 515 ----AVGVVVLGGKLYAVGGFD 532 (571)
T ss_pred ----cccEEEECCEEEEEeccc
Confidence 567889999999986544
No 151
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.72 E-value=3.1 Score=26.32 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=24.3
Q ss_pred ccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEe
Q psy17325 322 LENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLD 376 (461)
Q Consensus 322 ~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD 376 (461)
|.+++||+++.. .+.|...+........-+ .-...|.+|+++
T Consensus 1 pd~~~lyv~~~~------------~~~v~~id~~~~~~~~~i-~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSG------------SNTVSVIDTATNKVIATI-PVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCC------------CCEEEEEECCCCeEEEEE-ECCCCCceEEeC
Confidence 346677777665 667776665332222222 224678888873
No 152
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=85.38 E-value=0.47 Score=28.69 Aligned_cols=22 Identities=36% Similarity=1.064 Sum_probs=17.8
Q ss_pred cccC--ceeecc-CCccccCCCCee
Q psy17325 79 YCSQ--MCTNTK-GSYICSCNEGYV 100 (461)
Q Consensus 79 ~C~~--~C~~~~-g~~~C~C~~g~~ 100 (461)
.|.+ .|.+.. ++|.|.|++||.
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCc
Confidence 4543 788888 999999999985
No 153
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=84.90 E-value=42 Score=33.02 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=47.3
Q ss_pred eeeeEEeCCCCceEEEEeCCe-e-eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec-CCCeEEEeeCCCCCc
Q psy17325 294 LKIGKANMDGSNASILVSGQL-Y-EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-GSNRSTIISTKIYWP 370 (461)
Q Consensus 294 ~~I~~~~~~g~~~~~l~~~~~-p-~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d-G~~~~~l~~~~l~~p 370 (461)
..|+..+.+|...+.|..+.. . .-+.+|+.++.||++-.. +......|++++++ |...+-|. .....-
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~--------~~p~~r~lY~v~~~~~~~~~~LT-~~~~~~ 330 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANG--------DNPGERHLYRVSLDSGGEPKCLT-CEDGDH 330 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESS--------GGTTSBEEEEEETTETTEEEESS-TTSSTT
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecC--------CCCCceEEEEEEeCCCCCeEecc-CCCCCc
Confidence 467778888777554444433 3 457899999999987654 11234579999999 66655544 322222
Q ss_pred eeEEEecCCC
Q psy17325 371 NGLTLDIATR 380 (461)
Q Consensus 371 ~glaiD~~~~ 380 (461)
..+++.+..+
T Consensus 331 ~~~~~Spdg~ 340 (353)
T PF00930_consen 331 YSASFSPDGK 340 (353)
T ss_dssp EEEEE-TTSS
T ss_pred eEEEECCCCC
Confidence 4667764433
No 154
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=84.55 E-value=46 Score=33.23 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 378 ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
.+++||+.+. .+.|..++.+ +|...-.......+.. ....+.+++||+.+.....+
T Consensus 334 ~~g~l~v~~~-~G~l~~ld~~-tG~~~~~~~~~~~~~~-----------s~P~~~~~~l~v~t~~G~l~ 389 (394)
T PRK11138 334 YNGYLVVGDS-EGYLHWINRE-DGRFVAQQKVDSSGFL-----------SEPVVADDKLLIQARDGTVY 389 (394)
T ss_pred ECCEEEEEeC-CCEEEEEECC-CCCEEEEEEcCCCcce-----------eCCEEECCEEEEEeCCceEE
Confidence 5789999865 4688888884 6654322211111111 12234688999997655443
No 155
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.63 E-value=56 Score=32.77 Aligned_cols=197 Identities=10% Similarity=0.071 Sum_probs=94.4
Q ss_pred eeeeeecCCeEEEE-eC-CC--CeEEEEeCCCCcE-EEEecCCCCCceeEEEcCCCCceEEEEeecCC---------CCc
Q psy17325 153 GLAYDWIGGHIYWL-DS-RL--NRIEVCDENGTNR-IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE---------NPR 218 (461)
Q Consensus 153 ~iavd~~~~~ly~~-d~-~~--~~I~~~~~~G~~~-~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~---------~~~ 218 (461)
+.++.+.++.+-++ +. ++ -.|.+.++..... ...+.. ....+++.-+... .+|++.+.. ..+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~--~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGK--GFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSS--EEEEEECSTTTSS-CCGCCEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCC--EEEEEEeCcccccccCCCCcE
Confidence 34454555554443 22 22 2477778755422 211111 1233477776644 788887544 345
Q ss_pred EEEEecCCCCcE--EEEeccccc---ceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcc
Q psy17325 219 IERIGMDGSNRS--TIISTKIYW---PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVP 293 (461)
Q Consensus 219 I~~~~~dG~~~~--~i~~~~~~~---P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~ 293 (461)
|++..+...... .|... -.. -.++.+...++.|++.-..... .
T Consensus 204 v~~~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~------------------------------ 251 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTS-E------------------------------ 251 (414)
T ss_dssp EEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSS-E------------------------------
T ss_pred EEEEECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEcccc-C------------------------------
Confidence 777777644332 34332 222 3366666666666654333211 0
Q ss_pred eeeeEEeCCCC-----ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecC-CCCceEEEeecCCCe---E-EEe
Q psy17325 294 LKIGKANMDGS-----NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNR---S-TII 363 (461)
Q Consensus 294 ~~I~~~~~~g~-----~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~~~---~-~l~ 363 (461)
..++..+++.. ..+.+........-.++..++.+|+ .|+.+ .+.+|.+++++.... . +++
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi----------~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~ 321 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYI----------LTNDDAPNGRLVAVDLADPSPAEWWTVLI 321 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEE----------EE-TT-TT-EEEEEETTSTSGGGEEEEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEE----------eeCCCCCCcEEEEecccccccccceeEEc
Confidence 23555555543 2233332111111112222444443 34443 567899999876652 3 454
Q ss_pred eCC-CCCceeEEEecCCCeEEEEcC--CCCeEEEEEe
Q psy17325 364 STK-IYWPNGLTLDIATRRVYFADS--KLDFIDFCNY 397 (461)
Q Consensus 364 ~~~-l~~p~glaiD~~~~~ly~~d~--~~~~I~~~~~ 397 (461)
... -..-.++.+ .+++|++... ...+|..+++
T Consensus 322 ~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 322 PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp --SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred CCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence 222 124556666 6788887643 3457888888
No 156
>KOG4328|consensus
Probab=82.18 E-value=58 Score=32.66 Aligned_cols=194 Identities=13% Similarity=0.135 Sum_probs=97.6
Q ss_pred cceeeeeeeecCC-eEEEEeCCCCeEEEEeCCCCc--EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGG-HIYWLDSRLNRIEVCDENGTN--RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~-~ly~~d~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
.....+++-+... ++..+-...|+|...++++.. ...+.- ..|.+. |.. .|++.. ....+|+..++|
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~---f~~hs~---~Vs---~l~F~P-~n~s~i~ssSyD 256 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL---FTPHSG---PVS---GLKFSP-ANTSQIYSSSYD 256 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE---eccCCc---ccc---ceEecC-CChhheeeeccC
Confidence 4566778877655 677777778999999987322 221111 111111 112 255554 233577777777
Q ss_pred CCCcEEEEe---------c--ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcce
Q psy17325 226 GSNRSTIIS---------T--KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294 (461)
Q Consensus 226 G~~~~~i~~---------~--~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~ 294 (461)
|+-|-.=+. . .-.+-.++.+...++.+|+.+... . .
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~--------------------------------f 303 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-N--------------------------------F 303 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-c--------------------------------e
Confidence 765522111 1 122344555555566666665543 1 1
Q ss_pred eeeEEeCCCCceEEEE-eCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEe-ecCCCeEEEee--CCCCCc
Q psy17325 295 KIGKANMDGSNASILV-SGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG-MDGSNRSTIIS--TKIYWP 370 (461)
Q Consensus 295 ~I~~~~~~g~~~~~l~-~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~-~dG~~~~~l~~--~~l~~p 370 (461)
.+.-...+|+..+.+. ......+|++.|....+.-|-+. ....+|+-+. |.++-. .++. ..-...
T Consensus 304 ~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~----------D~T~kIWD~R~l~~K~s-p~lst~~HrrsV 372 (498)
T KOG4328|consen 304 NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL----------DQTAKIWDLRQLRGKAS-PFLSTLPHRRSV 372 (498)
T ss_pred EEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc----------CcceeeeehhhhcCCCC-cceeccccccee
Confidence 1222344455332222 11127888888887765554332 1234555553 444332 1221 122234
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+...+.+.++.|. +....+.|..++.
T Consensus 373 ~sAyFSPs~gtl~-TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 373 NSAYFSPSGGTLL-TTCQDNEIRVFDS 398 (498)
T ss_pred eeeEEcCCCCceE-eeccCCceEEeec
Confidence 5566677777744 4444566666655
No 157
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=81.53 E-value=4.7 Score=40.34 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=36.5
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccc-cce-----eeccCC---CCCcceEEEeeeCCEEEEE
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLM-VEF-----TNDLMG---DNGVPALALDLENGMLYYS 439 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~-~~~-----~~~~~~---~~~~~~~~l~~~~~~lYwt 439 (461)
-+..|.|..++..||++.+..+.|+..|+. +-.+.+.+.... .+. ...+.| .+.++-+.|+.++.+||||
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDIS-DP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDIS-DPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-S-STTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecC-CCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 467788888999999999999999999993 333433332211 000 000000 0134557789999999999
Q ss_pred eC
Q psy17325 440 TE 441 (461)
Q Consensus 440 d~ 441 (461)
++
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 75
No 158
>KOG1446|consensus
Probab=81.48 E-value=50 Score=31.40 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=100.5
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEe-CCCCcEEEEecCCCCCceeEE-EcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCD-ENGTNRIVLAKDNITQPRGMM-LDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~-~~G~~~~~l~~~~~~~p~~ia-~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
..+..|.++. +|....+-+.++.|+..+ ++|+...++-.... -+.-+. .+..+- .|+=+. ..+..|.-.++.-
T Consensus 15 ~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skky-G~~~~~Fth~~~~--~i~sSt-k~d~tIryLsl~d 89 (311)
T KOG1446|consen 15 GKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-GVDLACFTHHSNT--VIHSST-KEDDTIRYLSLHD 89 (311)
T ss_pred CceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccc-cccEEEEecCCce--EEEccC-CCCCceEEEEeec
Confidence 3567777775 444555566677888888 56666666544321 111111 122222 333222 2335666666554
Q ss_pred CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 227 SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 227 ~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
..........-...+.|.+-|.+ ..|.+-+... +|..-++.-...
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~----------------------------------tvrLWDlR~~~c 134 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDK----------------------------------TVRLWDLRVKKC 134 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCC-CeEEecccCC----------------------------------eEEeeEecCCCC
Confidence 33323333334457788888765 5565555442 355555555555
Q ss_pred EEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee---cCCCeEEE-ee-CCCCCceeEEEecCCCe
Q psy17325 307 SILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM---DGSNRSTI-IS-TKIYWPNGLTLDIATRR 381 (461)
Q Consensus 307 ~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~---dG~~~~~l-~~-~~l~~p~glaiD~~~~~ 381 (461)
..++....+.-.|+|| +|.++-+-.+ +..|.-.++ |..-.+++ +. .....=++|.+.+.++.
T Consensus 135 qg~l~~~~~pi~AfDp-~GLifA~~~~------------~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~ 201 (311)
T KOG1446|consen 135 QGLLNLSGRPIAAFDP-EGLIFALANG------------SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS 201 (311)
T ss_pred ceEEecCCCcceeECC-CCcEEEEecC------------CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE
Confidence 6665544466678897 4544433222 225555543 22222222 21 23444566777655555
Q ss_pred EEEEcCCCCeEEEEEecCCCCe
Q psy17325 382 VYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 382 ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
|.++. ..+.|..++. -+|..
T Consensus 202 iLlsT-~~s~~~~lDA-f~G~~ 221 (311)
T KOG1446|consen 202 ILLST-NASFIYLLDA-FDGTV 221 (311)
T ss_pred EEEEe-CCCcEEEEEc-cCCcE
Confidence 55553 3345555554 24553
No 159
>KOG0292|consensus
Probab=81.46 E-value=89 Score=34.31 Aligned_cols=96 Identities=7% Similarity=0.117 Sum_probs=65.2
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
+.|+++.+ ++-||++-..+-.|.+.+........-+.+.++-.|.+.+++..- +|.=+ .+...|..-++...+-.
T Consensus 54 VRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyP--WIlSA--SDDQTIrIWNwqsr~~i 128 (1202)
T KOG0292|consen 54 VRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYP--WILSA--SDDQTIRIWNWQSRKCI 128 (1202)
T ss_pred cceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCc--eEEEc--cCCCeEEEEeccCCceE
Confidence 46777764 778999888888999999887665544556777889999998755 44422 34567877777765554
Q ss_pred EEEecccccceeEEeeccCCe
Q psy17325 231 TIISTKIYWPNGLTLDIATRR 251 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ 251 (461)
.++...-.....-.+.+.++.
T Consensus 129 avltGHnHYVMcAqFhptEDl 149 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHPTEDL 149 (1202)
T ss_pred EEEecCceEEEeeccCCccce
Confidence 455544445566666664443
No 160
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=81.25 E-value=0.76 Score=21.65 Aligned_cols=9 Identities=56% Similarity=1.427 Sum_probs=5.3
Q ss_pred eEeCCCCCe
Q psy17325 52 LCTCPPGEI 60 (461)
Q Consensus 52 ~C~C~~G~~ 60 (461)
.|.|++||.
T Consensus 1 ~C~C~~G~~ 9 (13)
T PF12661_consen 1 TCQCPPGWT 9 (13)
T ss_dssp EEEE-TTEE
T ss_pred CccCcCCCc
Confidence 367777774
No 161
>KOG0279|consensus
Probab=80.58 E-value=51 Score=30.95 Aligned_cols=202 Identities=9% Similarity=0.024 Sum_probs=115.5
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE-----EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI-----VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~-----~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
.+.++++-.....+|.+-+.+..|.+.+++..... ..+.+.-....++++-+... +++=.. -...+...++
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~s--wD~~lrlWDl 92 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSAS--WDGTLRLWDL 92 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEecc--ccceEEEEEe
Confidence 45566666667788888888888888887755321 12223223467788887654 444333 3356777788
Q ss_pred CCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 225 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 225 dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
.+...+..+-....-..++||++.+..|. +-+... +|..-+.-|.
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qiv-SGSrDk----------------------------------Tiklwnt~g~ 137 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQIV-SGSRDK----------------------------------TIKLWNTLGV 137 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCceee-cCCCcc----------------------------------eeeeeeeccc
Confidence 76544434433445678899997666553 222221 2333333333
Q ss_pred ceEEEEeCC-e--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCe
Q psy17325 305 NASILVSGQ-L--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRR 381 (461)
Q Consensus 305 ~~~~l~~~~-~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ 381 (461)
-.-++.... . ..-+.+.|.+...|+...+ ....+..-++++-..+.-....-+.-+-+++. .+|.
T Consensus 138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-----------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGs 205 (315)
T KOG0279|consen 138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS-----------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGS 205 (315)
T ss_pred EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-----------CCceEEEEccCCcchhhccccccccEEEEEEC-CCCC
Confidence 333333322 1 4455566665555544333 12234344566554443332556677888897 5677
Q ss_pred EEEEcCCCCeEEEEEecCCCCe
Q psy17325 382 VYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 382 ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
|.-.-.+.+.+.-.+++ .|++
T Consensus 206 lcasGgkdg~~~LwdL~-~~k~ 226 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLN-EGKN 226 (315)
T ss_pred EEecCCCCceEEEEEcc-CCce
Confidence 77777778888888885 5655
No 162
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=80.05 E-value=67 Score=32.02 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=20.6
Q ss_pred ceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
+..+++ .+++||+.+. .+.+..++.. +|..
T Consensus 287 ~~~~~~--~~~~vy~~~~-~g~l~ald~~-tG~~ 316 (394)
T PRK11138 287 VNDFAV--DGGRIYLVDQ-NDRVYALDTR-GGVE 316 (394)
T ss_pred ccCcEE--ECCEEEEEcC-CCeEEEEECC-CCcE
Confidence 444556 5789999864 5788888883 5543
No 163
>KOG0272|consensus
Probab=79.65 E-value=68 Score=31.85 Aligned_cols=232 Identities=8% Similarity=0.035 Sum_probs=113.6
Q ss_pred ceeeeeeeec-CCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWI-GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~-~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
...++.+-+. .+.-..+-+.++.+...+.++.....-+.+...+...++++|... +|--+.+...-+++-+...
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk--- 293 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETK--- 293 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCc--eeeecccccchhhcccccc---
Confidence 4455556555 344444555566777777766532222334456778899999865 6655543333344422211
Q ss_pred cEEEEecc-cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 229 RSTIISTK-IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 229 ~~~i~~~~-~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
.+.+..++ -....+|++.+ .+.|-.+-... .+ ++| -++......
T Consensus 294 ~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD-~~-------------------------------~Rv--WDlRtgr~i 338 (459)
T KOG0272|consen 294 SELLLQEGHSKGVFSIAFQP-DGSLAATGGLD-SL-------------------------------GRV--WDLRTGRCI 338 (459)
T ss_pred hhhHhhcccccccceeEecC-CCceeeccCcc-ch-------------------------------hhe--eecccCcEE
Confidence 12222222 23456788875 34444333221 11 112 122222223
Q ss_pred EEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 308 ILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 308 ~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
.++.... ..+++++| +|+..-|-+. ...-+|+...| ....-++...-.-...+.+++..|+..++
T Consensus 339 m~L~gH~k~I~~V~fsP-NGy~lATgs~----------Dnt~kVWDLR~--r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFSP-NGYHLATGSS----------DNTCKVWDLRM--RSELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred EEecccccceeeEeECC-CceEEeecCC----------CCcEEEeeecc--cccceecccccchhhheEecccCCeEEEE
Confidence 3333333 67778886 4544443332 01234544444 33333333444556778888777777777
Q ss_pred cCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceee
Q psy17325 386 DSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLK 447 (461)
Q Consensus 386 d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~ 447 (461)
-+..+.+..-.. .+....+.+...... .+++++. ++....|-....+||
T Consensus 406 asyD~t~kiWs~-~~~~~~ksLaGHe~k------------V~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 406 ASYDNTVKIWST-RTWSPLKSLAGHEGK------------VISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred cccCcceeeecC-CCcccchhhcCCccc------------eEEEEeccCCceEEEeccCceee
Confidence 666665554443 244444444332222 2445544 244555555666665
No 164
>KOG4378|consensus
Probab=79.45 E-value=76 Score=32.30 Aligned_cols=71 Identities=8% Similarity=-0.003 Sum_probs=48.6
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCC-CceeEEEecCCCeEEEEcCCCCeEE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIY-WPNGLTLDIATRRVYFADSKLDFID 393 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~-~p~glaiD~~~~~ly~~d~~~~~I~ 393 (461)
.+-+.+.+..+.|..+-+. ++.+...+..|....--..+.-. -..||.+.+.+..|+++-....+|.
T Consensus 167 vRll~ys~skr~lL~~asd------------~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASD------------KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred EEEeecccccceeeEeecc------------CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEE
Confidence 5556667777777666554 66666666666544332222222 3468999999999999988888999
Q ss_pred EEEe
Q psy17325 394 FCNY 397 (461)
Q Consensus 394 ~~~~ 397 (461)
.+|.
T Consensus 235 ~yD~ 238 (673)
T KOG4378|consen 235 IYDI 238 (673)
T ss_pred Eeec
Confidence 9888
No 165
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=79.14 E-value=53 Score=33.12 Aligned_cols=61 Identities=15% Similarity=0.308 Sum_probs=31.4
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee----C---------------CCCCceeEEE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS----T---------------KIYWPNGLTL 375 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~----~---------------~l~~p~glai 375 (461)
+..|.|....++||++... .+.|...++.-...-.++. . --..|.=|.+
T Consensus 314 itDI~iSlDDrfLYvs~W~------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvql 381 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWL------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQL 381 (461)
T ss_dssp ---EEE-TTS-EEEEEETT------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE
T ss_pred eEeEEEccCCCEEEEEccc------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEE
Confidence 6777888888888887766 6777777765433222220 0 1124677888
Q ss_pred ecCCCeEEEEcC
Q psy17325 376 DIATRRVYFADS 387 (461)
Q Consensus 376 D~~~~~ly~~d~ 387 (461)
..+++||||+.+
T Consensus 382 S~DGkRlYvTnS 393 (461)
T PF05694_consen 382 SLDGKRLYVTNS 393 (461)
T ss_dssp -TTSSEEEEE--
T ss_pred ccCCeEEEEEee
Confidence 889999999965
No 166
>KOG1225|consensus
Probab=77.84 E-value=3.8 Score=42.15 Aligned_cols=9 Identities=44% Similarity=1.051 Sum_probs=6.1
Q ss_pred eEeCCCCCe
Q psy17325 52 LCTCPPGEI 60 (461)
Q Consensus 52 ~C~C~~G~~ 60 (461)
.|.|++||.
T Consensus 297 ~CiC~~g~~ 305 (525)
T KOG1225|consen 297 ECICNPGYS 305 (525)
T ss_pred EeecCCCcc
Confidence 677777774
No 167
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=76.81 E-value=57 Score=29.42 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEe
Q psy17325 378 ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYST 440 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd 440 (461)
.+++||++..... +..+++ .+|.. .. ....... .......++.||+++
T Consensus 172 ~~~~v~~~~~~g~-~~~~d~-~tg~~-~w-~~~~~~~-----------~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 172 SDGRVYVSSGDGR-VVAVDL-ATGEK-LW-SKPISGI-----------YSLPSVDGGTLYVTS 219 (238)
T ss_dssp CTTEEEEECCTSS-EEEEET-TTTEE-EE-EECSS-E-----------CECEECCCTEEEEEE
T ss_pred ECCEEEEEcCCCe-EEEEEC-CCCCE-EE-EecCCCc-----------cCCceeeCCEEEEEe
Confidence 4569999876554 455577 24442 22 2211111 111446677788777
No 168
>KOG4649|consensus
Probab=75.34 E-value=72 Score=29.82 Aligned_cols=133 Identities=15% Similarity=0.165 Sum_probs=76.3
Q ss_pred CceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeee
Q psy17325 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN 272 (461)
Q Consensus 193 ~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~ 272 (461)
.-+-+|+|+..| .|||-.. -..+|+...+- + .++ +.+--.++.|||.+..++.
T Consensus 32 s~~~~avd~~sG--~~~We~i-lg~RiE~sa~v-------v-gdf-----VV~GCy~g~lYfl~~~tGs----------- 84 (354)
T KOG4649|consen 32 SGIVIAVDPQSG--NLIWEAI-LGVRIECSAIV-------V-GDF-----VVLGCYSGGLYFLCVKTGS----------- 84 (354)
T ss_pred CceEEEecCCCC--cEEeehh-hCceeeeeeEE-------E-CCE-----EEEEEccCcEEEEEecchh-----------
Confidence 356689999999 9999652 22455543221 1 111 4455567888888877642
Q ss_pred eccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEE
Q psy17325 273 VNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERI 352 (461)
Q Consensus 273 v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~ 352 (461)
.+.....-++ .--.-..|+.+|.||..... +-+|-.|......|++.
T Consensus 85 ----------------------~~w~f~~~~~---------vk~~a~~d~~~glIycgshd--~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 85 ----------------------QIWNFVILET---------VKVRAQCDFDGGLIYCGSHD--GNFYALDPKTYGCVYKS 131 (354)
T ss_pred ----------------------heeeeeehhh---------hccceEEcCCCceEEEecCC--CcEEEecccccceEEec
Confidence 1222111111 00112346667777765443 45666676667788887
Q ss_pred eecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 353 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 353 ~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
...|+.. + +=+||+..+.||++-. .+.+-+++.
T Consensus 132 kcgG~~f---~--------sP~i~~g~~sly~a~t-~G~vlavt~ 164 (354)
T KOG4649|consen 132 KCGGGTF---V--------SPVIAPGDGSLYAAIT-AGAVLAVTK 164 (354)
T ss_pred ccCCcee---c--------cceecCCCceEEEEec-cceEEEEcc
Confidence 7777532 1 2246666788888854 456666666
No 169
>KOG4441|consensus
Probab=75.09 E-value=77 Score=33.59 Aligned_cols=131 Identities=9% Similarity=0.077 Sum_probs=74.9
Q ss_pred eeeeEEeCCCCceEEEEeCCee-eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCcee
Q psy17325 294 LKIGKANMDGSNASILVSGQLY-EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNG 372 (461)
Q Consensus 294 ~~I~~~~~~g~~~~~l~~~~~p-~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~g 372 (461)
..+++.++....=..+.....+ .++++-..+|.||..-.. - .+..-..|++.+.....-..+. .-...-.+
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~----d---g~~~l~svE~YDp~~~~W~~va-~m~~~r~~ 420 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGF----D---GEKSLNSVECYDPVTNKWTPVA-PMLTRRSG 420 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecc----c---cccccccEEEecCCCCcccccC-CCCcceee
Confidence 3577777766553333322222 245555568999986433 1 2223457888888877666655 22222233
Q ss_pred EEEecCCCeEEEEcC------CCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCc
Q psy17325 373 LTLDIATRRVYFADS------KLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444 (461)
Q Consensus 373 laiD~~~~~ly~~d~------~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~ 444 (461)
.++-..+++||.+-. ....+++.|.. ++.- ..+.. +.... -.+++++.++.||+.-..++
T Consensus 421 ~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~-t~~W-~~~~~-M~~~R---------~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 421 HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE-TNTW-TLIAP-MNTRR---------SGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred eEEEEECCEEEEEcCcCCCccccceEEEEcCC-CCce-eecCC-ccccc---------ccceEEEECCEEEEECCccC
Confidence 333338999999854 34678888882 3332 32222 11111 15678899999999765444
No 170
>PTZ00420 coronin; Provisional
Probab=73.81 E-value=1.3e+02 Score=31.93 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=56.3
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCC-c-E------EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGT-N-R------IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~-~-~------~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~ 222 (461)
+..+++.+..+++..+-..++.|.+.++... . . ...+...-.....++++|... .++.+- +....|...
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~--~iLaSg-S~DgtIrIW 153 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY--YIMCSS-GFDSFVNIW 153 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC--eEEEEE-eCCCeEEEE
Confidence 4556665555677777778889999887532 1 1 112222334577899999755 666553 334567777
Q ss_pred ecCCCCcEEEEecccccceeEEeeccCCee
Q psy17325 223 GMDGSNRSTIISTKIYWPNGLTLDIATRRV 252 (461)
Q Consensus 223 ~~dG~~~~~i~~~~~~~P~glavD~~~~~l 252 (461)
++........+. .......+++++.+..|
T Consensus 154 Dl~tg~~~~~i~-~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 154 DIENEKRAFQIN-MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred ECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence 765433221121 12346778888755544
No 171
>KOG0289|consensus
Probab=73.58 E-value=1e+02 Score=30.83 Aligned_cols=22 Identities=18% Similarity=0.031 Sum_probs=17.8
Q ss_pred ccceeEEeeccCCeeEEecCCC
Q psy17325 238 YWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 238 ~~P~glavD~~~~~ly~~d~~~ 259 (461)
...+++.+.+.+..|.|++...
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred ccceeeeeccCCcEEEEecCCc
Confidence 3457899999999999988765
No 172
>KOG0285|consensus
Probab=73.08 E-value=96 Score=30.27 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=121.5
Q ss_pred ceeeccccceeEEEecccc-ceeecccccCcccccceEEEc-CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE
Q psy17325 107 TCKAINHSAAFLIISNRHS-ILVADLEEKGKDHRAQDIVVS-GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI 184 (461)
Q Consensus 107 ~C~~~~~~~~~l~~~~~~~-I~~~~l~~~~~~~s~~~~~~~-g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~ 184 (461)
.|.++++...+++-..... |-..++....+.. ..+ -+...+++||....-.+|- -...++|.-.|+.-....
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-----tltGhi~~vr~vavS~rHpYlFs-~gedk~VKCwDLe~nkvI 228 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-----TLTGHIETVRGVAVSKRHPYLFS-AGEDKQVKCWDLEYNKVI 228 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccCeEEE-----eecchhheeeeeeecccCceEEE-ecCCCeeEEEechhhhhH
Confidence 5778887777766554333 3334443322211 112 2346789999754444442 233566777777654332
Q ss_pred EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeee
Q psy17325 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDC 264 (461)
Q Consensus 185 ~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~ 264 (461)
.-..+.+.....|+++|.-. .|+ |- +....|..-+|-.......+...-.-...+..-+.+..||-.....
T Consensus 229 R~YhGHlS~V~~L~lhPTld--vl~-t~-grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~----- 299 (460)
T KOG0285|consen 229 RHYHGHLSGVYCLDLHPTLD--VLV-TG-GRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS----- 299 (460)
T ss_pred HHhccccceeEEEeccccce--eEE-ec-CCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc-----
Confidence 22335566788899999876 555 43 3345565555554333222222111223344444444544332221
Q ss_pred cccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC-CCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEee
Q psy17325 265 KSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM-DGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTD 342 (461)
Q Consensus 265 ~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~-~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d 342 (461)
+|.--++ .|....++..... .+++++.|.. ++|-+.+
T Consensus 300 ------------------------------tvrlWDl~agkt~~tlt~hkksvral~lhP~e-~~fASas---------- 338 (460)
T KOG0285|consen 300 ------------------------------TVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-NLFASAS---------- 338 (460)
T ss_pred ------------------------------eEEEeeeccCceeEeeecccceeeEEecCCch-hhhhccC----------
Confidence 2333333 2444444444334 8899999853 2332211
Q ss_pred cCCCCceEEEee-cCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEE
Q psy17325 343 WGENPRIERIGM-DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 343 ~~~~~~I~~~~~-dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~ 405 (461)
...|...++ .|..... ++..-.-.+.|++ .++-+|++-..++.|...+. .+|.+-+
T Consensus 339 ---~dnik~w~~p~g~f~~n-lsgh~~iintl~~--nsD~v~~~G~dng~~~fwdw-ksg~nyQ 395 (460)
T KOG0285|consen 339 ---PDNIKQWKLPEGEFLQN-LSGHNAIINTLSV--NSDGVLVSGGDNGSIMFWDW-KSGHNYQ 395 (460)
T ss_pred ---CccceeccCCccchhhc-cccccceeeeeee--ccCceEEEcCCceEEEEEec-CcCcccc
Confidence 334544443 3433222 1122222344555 77888999888899998888 3666544
No 173
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=72.62 E-value=1.1e+02 Score=30.67 Aligned_cols=137 Identities=10% Similarity=0.106 Sum_probs=71.5
Q ss_pred ceeeeEEeCCCCceE--EEEeCCe-ee---eEEEeccCCeEEEeecCceeeEEEeecCCC-CceEEEeecCC-----CeE
Q psy17325 293 PLKIGKANMDGSNAS--ILVSGQL-YE---ALALDLENGMLYYSTLKCTRWLFWTDWGEN-PRIERIGMDGS-----NRS 360 (461)
Q Consensus 293 ~~~I~~~~~~g~~~~--~l~~~~~-p~---~iavd~~~~~lY~t~~~~~~~l~~~d~~~~-~~I~~~~~dG~-----~~~ 360 (461)
+..|++.++.....+ +|+.... +. ++.+...++.|+++... +.. ..++..+++.. ..+
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~----------~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS----------GTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES----------SSSEEEEEEEECCCTTTSS-SEE
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc----------cccCCeEEEEeccccCCCcCCcE
Confidence 467888888766543 5665443 43 56667666666654332 122 45566665542 233
Q ss_pred EEeeCCCCCceeEEEecCCCeEEEE---cCCCCeEEEEEecCCCC--eEEEEEccccceeeccCCCCCcceEEEeeeCCE
Q psy17325 361 TIISTKIYWPNGLTLDIATRRVYFA---DSKLDFIDFCNYDGTGR--QQVILIDLMVEFTNDLMGDNGVPALALDLENGM 435 (461)
Q Consensus 361 ~l~~~~l~~p~glaiD~~~~~ly~~---d~~~~~I~~~~~~g~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 435 (461)
.+. ..... ..-.++..++.+|+. ++..++|.+++++.... ...++........ -.++..++++
T Consensus 271 ~l~-~~~~~-~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~----------l~~~~~~~~~ 338 (414)
T PF02897_consen 271 LLS-PREDG-VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS----------LEDVSLFKDY 338 (414)
T ss_dssp EEE-ESSSS--EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE----------EEEEEEETTE
T ss_pred EEe-CCCCc-eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee----------EEEEEEECCE
Confidence 333 22221 112344468888874 34567999999953221 2334444333222 2467778899
Q ss_pred EEEEeCCCceeeccee
Q psy17325 436 LYYSTEGAEFLKTPLF 451 (461)
Q Consensus 436 lYwtd~~~~~i~~~~~ 451 (461)
|+++...+..-++.++
T Consensus 339 Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 339 LVLSYRENGSSRLRVY 354 (414)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEEEECCccEEEEE
Confidence 9988877765554443
No 174
>KOG3914|consensus
Probab=72.07 E-value=1.1e+02 Score=30.28 Aligned_cols=148 Identities=9% Similarity=0.102 Sum_probs=87.9
Q ss_pred EEEEeecCCCCcEEEEecCCCCc-EEEEec--ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEE
Q psy17325 207 WLFWTDWGENPRIERIGMDGSNR-STIIST--KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLY 283 (461)
Q Consensus 207 ~ly~td~~~~~~I~~~~~dG~~~-~~i~~~--~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~y 283 (461)
.|+.++ + ..++.....+++.+ ..++.. --..|+.|.+......+-++|...+.
T Consensus 76 llAv~~-~-~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~---------------------- 131 (390)
T KOG3914|consen 76 LVAVAT-S-SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDV---------------------- 131 (390)
T ss_pred EEEEEe-C-CCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCc----------------------
Confidence 566665 2 23544555555443 222221 23468888888777777777776543
Q ss_pred EEecCCCCcceeeeEEeCC-CCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeE-E
Q psy17325 284 WIDEGGNGVPLKIGKANMD-GSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRS-T 361 (461)
Q Consensus 284 w~d~~~~~~~~~I~~~~~~-g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~-~ 361 (461)
..+...+.+ |..+.++....+...+++.|....|.-+|.. .+|...+..+...- .
T Consensus 132 ----------~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRD-------------EkIRvs~ypa~f~Ies 188 (390)
T KOG3914|consen 132 ----------YSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRD-------------EKIRVSRYPATFVIES 188 (390)
T ss_pred ----------eeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCC-------------ceEEEEecCcccchhh
Confidence 223334434 5555554443347888999888777666653 45655555554321 1
Q ss_pred EeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeE
Q psy17325 362 IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQ 404 (461)
Q Consensus 362 l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~ 404 (461)
+....-.....|++ ..+++.|+-.+.++++.-++ .+|+..
T Consensus 189 fclGH~eFVS~isl--~~~~~LlS~sGD~tlr~Wd~-~sgk~L 228 (390)
T KOG3914|consen 189 FCLGHKEFVSTISL--TDNYLLLSGSGDKTLRLWDI-TSGKLL 228 (390)
T ss_pred hccccHhheeeeee--ccCceeeecCCCCcEEEEec-ccCCcc
Confidence 22123334567888 78888888888888888888 366654
No 175
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=71.98 E-value=1.1e+02 Score=30.45 Aligned_cols=176 Identities=14% Similarity=0.147 Sum_probs=73.3
Q ss_pred EEEEeC-CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccc-cc
Q psy17325 163 IYWLDS-RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIY-WP 240 (461)
Q Consensus 163 ly~~d~-~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~-~P 240 (461)
||.++. +...++..++.....+.|..+.-.+..|..+-+... .+|+.. ....+.+++++....+.|....-. ..
T Consensus 51 lF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~--~~~Yv~--~~~~l~~vdL~T~e~~~vy~~p~~~~g 126 (386)
T PF14583_consen 51 LFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR--ALYYVK--NGRSLRRVDLDTLEERVVYEVPDDWKG 126 (386)
T ss_dssp EEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS--EEEEEE--TTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred EEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC--eEEEEE--CCCeEEEEECCcCcEEEEEECCccccc
Confidence 444442 234567777777776776654323344666767766 887654 235899999998776665443111 12
Q ss_pred eeEE-eeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeE
Q psy17325 241 NGLT-LDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEAL 318 (461)
Q Consensus 241 ~gla-vD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~i 318 (461)
.|-. ++. ...+++.-..... ....+.+ ..-++.+|-+ ....+|.++++.++.+++++.... ..-+
T Consensus 127 ~gt~v~n~-d~t~~~g~e~~~~-d~~~l~~------~~~f~e~~~a-----~p~~~i~~idl~tG~~~~v~~~~~wlgH~ 193 (386)
T PF14583_consen 127 YGTWVANS-DCTKLVGIEISRE-DWKPLTK------WKGFREFYEA-----RPHCRIFTIDLKTGERKVVFEDTDWLGHV 193 (386)
T ss_dssp EEEEEE-T-TSSEEEEEEEEGG-G-----S------HHHHHHHHHC--------EEEEEEETTT--EEEEEEESS-EEEE
T ss_pred ccceeeCC-CccEEEEEEEeeh-hccCccc------cHHHHHHHhh-----CCCceEEEEECCCCceeEEEecCccccCc
Confidence 2333 233 2333322111000 0000000 0000000000 011468888888888888887544 2222
Q ss_pred EEeccCC-eEEEeecCceeeEEEeecCC-CCceEEEeecCCCeEEEe
Q psy17325 319 ALDLENG-MLYYSTLKCTRWLFWTDWGE-NPRIERIGMDGSNRSTII 363 (461)
Q Consensus 319 avd~~~~-~lY~t~~~~~~~l~~~d~~~-~~~I~~~~~dG~~~~~l~ 363 (461)
-..|... .|-++..+ .|.. ..||+-++.||++...+.
T Consensus 194 ~fsP~dp~li~fCHEG--------pw~~Vd~RiW~i~~dg~~~~~v~ 232 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEG--------PWDLVDQRIWTINTDGSNVKKVH 232 (386)
T ss_dssp EEETTEEEEEEEEE-S---------TTTSS-SEEEEETTS---EESS
T ss_pred ccCCCCCCEEEEeccC--------CcceeceEEEEEEcCCCcceeee
Confidence 2222221 22222222 3443 359999999999988775
No 176
>KOG1274|consensus
Probab=71.95 E-value=1.4e+02 Score=32.76 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=54.4
Q ss_pred CCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccC-CCCCc
Q psy17325 346 NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLM-GDNGV 424 (461)
Q Consensus 346 ~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~ 424 (461)
.+.|.+++.+-.....|+..---.-+.++++.. |....+-+..-.|..++++ ++...+++.....+.. .+. .+...
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~-D~s~~~~lrgh~apVl-~l~~~p~~~ 151 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLD-DSSQEKVLRGHDAPVL-QLSYDPKGN 151 (933)
T ss_pred cceEEEeeCCCCCccceeeeeeccceEEEEecC-CcEEEeecCceeEEEEecc-ccchheeecccCCcee-eeeEcCCCC
Confidence 678999998877777666233333567888744 4444443444467777774 4444444433222211 110 11111
Q ss_pred ceEEEeeeCCEEEEEeCCCceeecce
Q psy17325 425 PALALDLENGMLYYSTEGAEFLKTPL 450 (461)
Q Consensus 425 ~~~~l~~~~~~lYwtd~~~~~i~~~~ 450 (461)
=+|.+--+|.|++-+-.++.+...|
T Consensus 152 -fLAvss~dG~v~iw~~~~~~~~~tl 176 (933)
T KOG1274|consen 152 -FLAVSSCDGKVQIWDLQDGILSKTL 176 (933)
T ss_pred -EEEEEecCceEEEEEcccchhhhhc
Confidence 2444445788888777776664433
No 177
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=71.78 E-value=3.5 Score=26.00 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=15.7
Q ss_pred CCceeEEEecCCCeEEEEcC
Q psy17325 368 YWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 368 ~~p~glaiD~~~~~ly~~d~ 387 (461)
..|++|++| ..+.+|++-.
T Consensus 13 ~~~~~IavD-~~GNiYv~G~ 31 (38)
T PF06739_consen 13 DYGNGIAVD-SNGNIYVTGY 31 (38)
T ss_pred eeEEEEEEC-CCCCEEEEEe
Confidence 469999999 7788999843
No 178
>KOG0268|consensus
Probab=68.94 E-value=1.1e+02 Score=29.90 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=43.8
Q ss_pred eEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe
Q psy17325 162 HIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS 234 (461)
Q Consensus 162 ~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~ 234 (461)
..+.+-+.+|.|...++........+.....-.+||.++. +. .+++.| ...+.+..++|....++..
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~--~~tvgd---DKtvK~wk~~~~p~~tilg 146 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TS--FFTVGD---DKTVKQWKIDGPPLHTILG 146 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cc--eEEecC---CcceeeeeccCCcceeeec
Confidence 4455666778888888887665544443333488999997 34 555544 4678888888865555543
No 179
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=67.83 E-value=1.6e+02 Score=30.80 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=32.8
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecC--CCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWG--ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 392 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~--~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I 392 (461)
-.=+|+|...|++-|.-.... .=.| |+. ..+.+.....+|+.+.+++ .-..+|.+|+.|..+++.
T Consensus 271 ~s~vAld~~TG~~~W~~Q~~~-~D~w-D~d~~~~p~l~d~~~~G~~~~~v~-----------~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 271 SSIVARDPDTGKIKWHYQTTP-HDEW-DYDGVNEMILFDLKKDGKPRKLLA-----------HADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eeEEEEccccCCEEEeeeCCC-CCCc-cccCCCCcEEEEeccCCcEEEEEE-----------EeCCCceEEEEECCCCce
Confidence 345788988998888533211 1112 222 2333444445665444444 112455666666655543
No 180
>KOG0310|consensus
Probab=67.69 E-value=1.5e+02 Score=30.14 Aligned_cols=101 Identities=7% Similarity=0.040 Sum_probs=59.3
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccccc
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 239 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~ 239 (461)
.|.|.-+--..|.|.+++...+.....+...-...+-+-+.|..+ .++.+- .+...+...++++...+.-++..--+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~--t~l~s~-sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDN--TMLVSG-SDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCC--eEEEec-CCCceEEEEEcCCcEEEEEecCCcce
Confidence 456666666678888888444221111222212234455677766 787765 44455555566655432223333345
Q ss_pred ceeEEeeccCCeeEEecCCCceee
Q psy17325 240 PNGLTLDIATRRVYFADSKLDFID 263 (461)
Q Consensus 240 P~glavD~~~~~ly~~d~~~~~i~ 263 (461)
....++-+.++.|.++-.+.+.|+
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEE
Confidence 677888889999999998886653
No 181
>KOG1274|consensus
Probab=67.07 E-value=2e+02 Score=31.62 Aligned_cols=138 Identities=16% Similarity=0.115 Sum_probs=72.8
Q ss_pred eeeeeeecCCeEEEEeCCCCeEEEEeCCCC--cEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGT--NRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~~~~I~~~~~~G~--~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
..|.+|+.+..|+..++ ++.|.+.+.... ....+-..+ ....+|+.+. ..|.+- ..+..|.|...+....
T Consensus 17 t~i~~d~~gefi~tcgs-dg~ir~~~~~sd~e~P~ti~~~g-~~v~~ia~~s-----~~f~~~-s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGS-DGDIRKWKTNSDEEEPETIDISG-ELVSSIACYS-----NHFLTG-SEQNTVLRYKFPSGEE 88 (933)
T ss_pred EEEEEcCCCCEEEEecC-CCceEEeecCCcccCCchhhccC-ceeEEEeecc-----cceEEe-eccceEEEeeCCCCCc
Confidence 45788887777776665 345555442221 122221111 1244555543 234443 3457888888886666
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC-CCceEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD-GSNASI 308 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~-g~~~~~ 308 (461)
..|+..-......++|+..+..+-.+.... .|...+++ ++...+
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~-----------------------------------~vK~~~~~D~s~~~~ 133 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDT-----------------------------------AVKLLNLDDSSQEKV 133 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCce-----------------------------------eEEEEeccccchhee
Confidence 555544223456788886555544433332 24455544 443444
Q ss_pred EEeCCe-eeeEEEeccCCeEEEeec
Q psy17325 309 LVSGQL-YEALALDLENGMLYYSTL 332 (461)
Q Consensus 309 l~~~~~-p~~iavd~~~~~lY~t~~ 332 (461)
+..... .-+|.+||.+..|-++..
T Consensus 134 lrgh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 134 LRGHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred ecccCCceeeeeEcCCCCEEEEEec
Confidence 333222 678888887766665544
No 182
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=66.90 E-value=1.4e+02 Score=29.50 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCc
Q psy17325 378 ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~ 444 (461)
.+++||+.+. .+.|..++.+ +|...-.+........ ....+.++.||+......
T Consensus 319 ~g~~l~~~~~-~G~l~~~d~~-tG~~~~~~~~~~~~~~-----------~sp~~~~~~l~v~~~dG~ 372 (377)
T TIGR03300 319 VGGYLVVGDF-EGYLHWLSRE-DGSFVARLKTDGSGIA-----------SPPVVVGDGLLVQTRDGD 372 (377)
T ss_pred ECCEEEEEeC-CCEEEEEECC-CCCEEEEEEcCCCccc-----------cCCEEECCEEEEEeCCce
Confidence 4678888764 4678888873 5655322221111111 122355678998875443
No 183
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=66.53 E-value=99 Score=27.81 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=43.6
Q ss_pred CCeEEEEeCCCCeEEEEeC-CCCcEEEEe-cCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEe-cCCCCcEEEEec-
Q psy17325 160 GGHIYWLDSRLNRIEVCDE-NGTNRIVLA-KDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIG-MDGSNRSTIIST- 235 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~-~G~~~~~l~-~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~-~dG~~~~~i~~~- 235 (461)
++++|+.+ ..+.|...+. +|+..-..- ...+..+ .+++ .+ .+|+.. . ...|...+ .+|...-.+...
T Consensus 36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~--~~--~v~v~~-~-~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 36 GGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVVD--GG--RVYVGT-S-DGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp TTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEEE--TT--EEEEEE-T-TSEEEEEETTTSCEEEEEEE-S
T ss_pred CCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eeec--cc--cccccc-c-eeeeEecccCCcceeeeecccc
Confidence 67777774 5677888885 665432222 2222222 2333 24 688776 2 23788877 455443322111
Q ss_pred ----ccccceeEEeeccCCeeEEecC
Q psy17325 236 ----KIYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 236 ----~~~~P~glavD~~~~~ly~~d~ 257 (461)
....+...+++ ++.+|+...
T Consensus 107 ~~~~~~~~~~~~~~~--~~~~~~~~~ 130 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVD--GDRLYVGTS 130 (238)
T ss_dssp SCTCSTB--SEEEEE--TTEEEEEET
T ss_pred ccccccccccCceEe--cCEEEEEec
Confidence 12233344444 667776664
No 184
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=65.72 E-value=73 Score=33.17 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=41.0
Q ss_pred CCCCceeEEEcCCCCceEEEEeecCCC---------------CcEEEEecCCC-------CcEEEEec------------
Q psy17325 190 NITQPRGMMLDPSPGTRWLFWTDWGEN---------------PRIERIGMDGS-------NRSTIIST------------ 235 (461)
Q Consensus 190 ~~~~p~~ia~d~~~g~~~ly~td~~~~---------------~~I~~~~~dG~-------~~~~i~~~------------ 235 (461)
.+.+|..|++.|..| .+|++.-... .+|.|....+. ....++..
T Consensus 415 ~mdRpE~i~~~p~~g--~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~ 492 (616)
T COG3211 415 PMDRPEWIAVNPGTG--EVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA 492 (616)
T ss_pred cccCccceeecCCcc--eEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence 468999999999999 9999863211 45777655432 11222221
Q ss_pred -----ccccceeEEeeccCCeeEEec
Q psy17325 236 -----KIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 236 -----~~~~P~glavD~~~~~ly~~d 256 (461)
-+.+|-+|+||+ .++|++..
T Consensus 493 ~~~~~~f~~PDnl~fD~-~GrLWi~T 517 (616)
T COG3211 493 NINANWFNSPDNLAFDP-WGRLWIQT 517 (616)
T ss_pred CcccccccCCCceEECC-CCCEEEEe
Confidence 144599999997 56666544
No 185
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=64.67 E-value=1.2e+02 Score=28.22 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=17.0
Q ss_pred eeeEEEeccCCeEEEeecC
Q psy17325 315 YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~ 333 (461)
-+|++.|...|.||+++..
T Consensus 207 TEG~VaDdEtG~LYIaeEd 225 (364)
T COG4247 207 TEGMVADDETGFLYIAEED 225 (364)
T ss_pred ccceeeccccceEEEeecc
Confidence 6899999999999998765
No 186
>KOG1446|consensus
Probab=64.27 E-value=1.4e+02 Score=28.58 Aligned_cols=224 Identities=12% Similarity=0.140 Sum_probs=123.1
Q ss_pred EEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccccccee
Q psy17325 163 IYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNG 242 (461)
Q Consensus 163 ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~g 242 (461)
||=+...+..|.-.++....+.....+.-....+|.+-|... .|.+. .....|...++--.+-+-++. +..+.-
T Consensus 72 i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d---~FlS~-S~D~tvrLWDlR~~~cqg~l~--~~~~pi 145 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD---TFLSS-SLDKTVRLWDLRVKKCQGLLN--LSGRPI 145 (311)
T ss_pred EEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCC---eEEec-ccCCeEEeeEecCCCCceEEe--cCCCcc
Confidence 444444466777777777666666666656788999999865 88876 444677777777444444443 345566
Q ss_pred EEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE-eCC-CCceEEEEeCCe---eee
Q psy17325 243 LTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA-NMD-GSNASILVSGQL---YEA 317 (461)
Q Consensus 243 lavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~-~~~-g~~~~~l~~~~~---p~~ 317 (461)
.|+|+ ++.+|.+-...+.|. ++-. ..+ |-.....+..+. -..
T Consensus 146 ~AfDp-~GLifA~~~~~~~Ik--------------------------------LyD~Rs~dkgPF~tf~i~~~~~~ew~~ 192 (311)
T KOG1446|consen 146 AAFDP-EGLIFALANGSELIK--------------------------------LYDLRSFDKGPFTTFSITDNDEAEWTD 192 (311)
T ss_pred eeECC-CCcEEEEecCCCeEE--------------------------------EEEecccCCCCceeEccCCCCccceee
Confidence 89997 566665555554442 2211 122 222222232111 568
Q ss_pred EEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee--CCCCCceeEEEecCCCeEEEEcCCCCeEEEE
Q psy17325 318 LALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS--TKIYWPNGLTLDIATRRVYFADSKLDFIDFC 395 (461)
Q Consensus 318 iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~--~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~ 395 (461)
|.+.+.++.|.++... +++|+.|. .+|+-...+-. ....-|-+-++-|+++.|.-. +..++|..-
T Consensus 193 l~FS~dGK~iLlsT~~--s~~~~lDA----------f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g-s~dg~i~vw 259 (311)
T KOG1446|consen 193 LEFSPDGKSILLSTNA--SFIYLLDA----------FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG-SDDGTIHVW 259 (311)
T ss_pred eEEcCCCCEEEEEeCC--CcEEEEEc----------cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe-cCCCcEEEE
Confidence 8888888888887664 45555553 45553333321 223345455565555555554 556788887
Q ss_pred EecCCCCeEEEEEccccceeeccCCCCCcc--eEEEeeeCCEEEEEeCC
Q psy17325 396 NYDGTGRQQVILIDLMVEFTNDLMGDNGVP--ALALDLENGMLYYSTEG 442 (461)
Q Consensus 396 ~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~lYwtd~~ 442 (461)
++ .+|...-.+.....+... -..+.| .+.++.....++|.-..
T Consensus 260 ~~-~tg~~v~~~~~~~~~~~~---~~~fnP~~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 260 NL-ETGKKVAVLRGPNGGPVS---CVRFNPRYAMFVSASSNLVFWLPDE 304 (311)
T ss_pred Ec-CCCcEeeEecCCCCCCcc---ccccCCceeeeeecCceEEEEeccc
Confidence 77 356654333321111110 011223 33344455677886543
No 187
>PLN00181 protein SPA1-RELATED; Provisional
Probab=64.10 E-value=2.4e+02 Score=31.28 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=54.5
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc-----E--EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN-----R--IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~-----~--~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~ 222 (461)
...++++++ .+.++.+-..++.|.+.+..... . ..+.........+++..+..+ ..|.-++ ....|...
T Consensus 485 ~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~las~~--~Dg~v~lW 560 (793)
T PLN00181 485 LVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK-SQVASSN--FEGVVQVW 560 (793)
T ss_pred cEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCC-CEEEEEe--CCCeEEEE
Confidence 356678876 45566666678889888864311 0 011011113456677766533 1343333 34566666
Q ss_pred ecCCCCcEEEEecccccceeEEeeccCCeeEEecCCC
Q psy17325 223 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 223 ~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
++........+.........+++++..+.++++-...
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence 6654332222222233456777776555665555444
No 188
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=63.86 E-value=83 Score=32.78 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=61.5
Q ss_pred EcCccceeeeeeeecCCeEEEEeCCCC----------------eEEEEeCCCCc-------EEEEe-cC-----------
Q psy17325 145 VSGLDLVEGLAYDWIGGHIYWLDSRLN----------------RIEVCDENGTN-------RIVLA-KD----------- 189 (461)
Q Consensus 145 ~~g~~~p~~iavd~~~~~ly~~d~~~~----------------~I~~~~~~G~~-------~~~l~-~~----------- 189 (461)
.+-+++||.+++.+.++.+|++..+++ +|.+.-..+.. -..++ .+
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~ 492 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA 492 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence 456789999999999999999986654 67666544321 11111 11
Q ss_pred -----CCCCceeEEEcCCCCceEEEEeecCCCC-------cEEEEecCCCCcEEEEecccc-----cceeEEeeccCCee
Q psy17325 190 -----NITQPRGMMLDPSPGTRWLFWTDWGENP-------RIERIGMDGSNRSTIISTKIY-----WPNGLTLDIATRRV 252 (461)
Q Consensus 190 -----~~~~p~~ia~d~~~g~~~ly~td~~~~~-------~I~~~~~dG~~~~~i~~~~~~-----~P~glavD~~~~~l 252 (461)
.+..|.+|++|+..+ ....+| +... .+..+...+..+-.+.. .+. -..|.++-+..+.|
T Consensus 493 ~~~~~~f~~PDnl~fD~~Gr--LWi~TD-g~~s~~~~~~~G~~~m~~~~p~~g~~~r-f~t~P~g~E~tG~~FspD~~Tl 568 (616)
T COG3211 493 NINANWFNSPDNLAFDPWGR--LWIQTD-GSGSTLRNRFRGVTQMLTPDPKTGTIKR-FLTGPIGCEFTGPCFSPDGKTL 568 (616)
T ss_pred CcccccccCCCceEECCCCC--EEEEec-CCCCccCcccccccccccCCCccceeee-eccCCCcceeecceeCCCCceE
Confidence 144599999999855 333445 3321 11111122222222211 122 24588888888888
Q ss_pred EEec
Q psy17325 253 YFAD 256 (461)
Q Consensus 253 y~~d 256 (461)
|+.=
T Consensus 569 FV~v 572 (616)
T COG3211 569 FVNV 572 (616)
T ss_pred EEEe
Confidence 8754
No 189
>KOG0273|consensus
Probab=62.69 E-value=1.8e+02 Score=29.48 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=45.1
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCC
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPG 204 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g 204 (461)
+....++.|||.+..=|.+-...+.|.++.+++.....-+.+.-....+|-++|...
T Consensus 316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~ 372 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS 372 (524)
T ss_pred eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc
Confidence 445567899999999999999999999999988775544444546688999998744
No 190
>KOG0318|consensus
Probab=62.27 E-value=1.9e+02 Score=29.72 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=25.7
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEe-CCCCcEEEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCD-ENGTNRIVL 186 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~-~~G~~~~~l 186 (461)
.+..+.+.+. +..|.+-..+++|...| .+|...-.+
T Consensus 192 FV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l 228 (603)
T KOG0318|consen 192 FVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGEL 228 (603)
T ss_pred ceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEe
Confidence 4566777764 78888888889998887 555554444
No 191
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.24 E-value=1.5e+02 Score=28.36 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=22.9
Q ss_pred EEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 198 MLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 198 a~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
|++.... +||+--|-..+.+++-+-+|+
T Consensus 41 AV~~vDd--~IyFGGWVHAPa~y~gk~~g~ 68 (339)
T PF09910_consen 41 AVEWVDD--FIYFGGWVHAPAVYEGKGDGR 68 (339)
T ss_pred eeeeecc--eEEEeeeecCCceeeeccCCc
Confidence 5666666 999999988888998888876
No 192
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=60.82 E-value=1.7e+02 Score=28.70 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=21.6
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
.+...++ .+++||+.+ ..+.|..++.+ +|..
T Consensus 271 ~~~~p~~--~~~~vyv~~-~~G~l~~~d~~-tG~~ 301 (377)
T TIGR03300 271 SYQGPAV--DDNRLYVTD-ADGVVVALDRR-SGSE 301 (377)
T ss_pred CccCceE--eCCEEEEEC-CCCeEEEEECC-CCcE
Confidence 3445566 578999986 45789999983 5653
No 193
>KOG0918|consensus
Probab=58.11 E-value=31 Score=34.09 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=43.2
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEec-----------------CCCCeEEEEEccc---cceeeccCCC---CCcceE
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNYD-----------------GTGRQQVILIDLM---VEFTNDLMGD---NGVPAL 427 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~~-----------------g~g~~~~~~~~~~---~~~~~~~~~~---~~~~~~ 427 (461)
+.|-|..++..||++.+-.+.|++.|+. .++.+.+++.+.. +.-...+-|. ++++=+
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~GGPQMl 394 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLRGGPQML 394 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCccccCCceeE
Confidence 4566777899999999999999888872 0122222232220 0000111122 246667
Q ss_pred EEeeeCCEEEEEeC
Q psy17325 428 ALDLENGMLYYSTE 441 (461)
Q Consensus 428 ~l~~~~~~lYwtd~ 441 (461)
-|+.++.+||+|.+
T Consensus 395 QLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 395 QLSLDGKRLYVTNS 408 (476)
T ss_pred EeccCCcEEEEEch
Confidence 88999999999864
No 194
>PTZ00421 coronin; Provisional
Probab=57.57 E-value=2.4e+02 Score=29.28 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=59.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc-------EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN-------RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~-------~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~ 222 (461)
.+..+++.+..+++.++-+.++.|.+.++.... ....+.+.-.....|++.|..+ .++++- +....|...
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--~iLaSg-s~DgtVrIW 153 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--NVLASA-GADMVVNVW 153 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC--CEEEEE-eCCCEEEEE
Confidence 455677766556677777888999998865321 1112223334567899998754 455554 344567777
Q ss_pred ecCCCCcEEEEecccccceeEEeeccCCeeEEecCCC
Q psy17325 223 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 223 ~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
++........+.........|++.+.+. +.++-...
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~D 189 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKD 189 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCC
Confidence 7764332222222233466788876544 44443333
No 195
>KOG0772|consensus
Probab=54.30 E-value=2.7e+02 Score=28.78 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=58.6
Q ss_pred cceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-----EEEecCCCCCceeEEEcCCCCceEEEEeecC
Q psy17325 140 AQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-----IVLAKDNITQPRGMMLDPSPGTRWLFWTDWG 214 (461)
Q Consensus 140 ~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-----~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~ 214 (461)
.+.-+..|...+..+++|+. |.-|++-+-...|...++.|... +.|....-...+.+.+-+..+ .|.+..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~--~iLvvs-- 233 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD--QILVVS-- 233 (641)
T ss_pred ceEeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC--eEEEEe--
Confidence 45556677778889999974 45555666677888999888652 233333335678888888766 555544
Q ss_pred CCCcEEEEecCCCCcEEEE
Q psy17325 215 ENPRIERIGMDGSNRSTII 233 (461)
Q Consensus 215 ~~~~I~~~~~dG~~~~~i~ 233 (461)
.+.++...+-||.......
T Consensus 234 g~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred cCcceeEEccCCceeeeee
Confidence 3456777777887654443
No 196
>KOG0292|consensus
Probab=54.23 E-value=3.5e+02 Score=30.10 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=51.6
Q ss_pred eEEEEeCCCCeEEEEeCCCC--cEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccccc
Q psy17325 162 HIYWLDSRLNRIEVCDENGT--NRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 239 (461)
Q Consensus 162 ~ly~~d~~~~~I~~~~~~G~--~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~ 239 (461)
-|+++-..+..|....++-+ ...-...+..++..++.++|... |..+. ++...|...+|+-..........-.+
T Consensus 219 pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~---lIlSn-sEDksirVwDm~kRt~v~tfrrendR 294 (1202)
T KOG0292|consen 219 PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD---LILSN-SEDKSIRVWDMTKRTSVQTFRRENDR 294 (1202)
T ss_pred ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc---eeEec-CCCccEEEEecccccceeeeeccCCe
Confidence 45555444444443333322 22222335567788999999755 66777 77789999999853221122112223
Q ss_pred ceeEEeeccCCeeEEecCCC
Q psy17325 240 PNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 240 P~glavD~~~~~ly~~d~~~ 259 (461)
-.-||..| +.+||-+-..+
T Consensus 295 FW~laahP-~lNLfAAgHDs 313 (1202)
T KOG0292|consen 295 FWILAAHP-ELNLFAAGHDS 313 (1202)
T ss_pred EEEEEecC-CcceeeeecCC
Confidence 44566665 56677665554
No 197
>smart00284 OLF Olfactomedin-like domains.
Probab=53.57 E-value=1.9e+02 Score=26.99 Aligned_cols=119 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred eeeEEEeec--CCCCceEEEe-----ecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 335 TRWLFWTDW--GENPRIERIG-----MDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 335 ~~~l~~~d~--~~~~~I~~~~-----~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
...+|.+++ .....+.... +.|...+.......-.-.|..| .+|.||+.-..+..|.+.++.........+
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VV--YngslYY~~~~s~~iiKydL~t~~v~~~~~ 111 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVV--YNGSLYFNKFNSHDICRFDLTTETYQKEPL 111 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCccccccEEE--ECceEEEEecCCccEEEEECCCCcEEEEEe
Q ss_pred EccccceeeccCCCCCcceEEEeeeCCEEEEE---eCCCceeecceeEEee
Q psy17325 408 IDLMVEFTNDLMGDNGVPALALDLENGMLYYS---TEGAEFLKTPLFCITR 455 (461)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwt---d~~~~~i~~~~~~~~~ 455 (461)
+.....-..-...-+...-++|++++.-|++. ...++.|.+..-...+
T Consensus 112 Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~t 162 (255)
T smart00284 112 LNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPAT 162 (255)
T ss_pred cCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCccc
No 198
>PTZ00421 coronin; Provisional
Probab=53.08 E-value=2.8e+02 Score=28.75 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=32.7
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC-------cEEEEecccccceeEEeeccCCeeEEecCC
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN-------RSTIISTKIYWPNGLTLDIATRRVYFADSK 258 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~-------~~~i~~~~~~~P~glavD~~~~~ly~~d~~ 258 (461)
....+++++|..+ .++.+- +....|...++.... ....+...-.....|++.+....+.++-..
T Consensus 76 ~~V~~v~fsP~d~--~~LaSg-S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 76 GPIIDVAFNPFDP--QKLFTA-SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCEEEEEEcCCCC--CEEEEE-eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 4577899988444 344443 344566665554221 111122223345678887765555554433
No 199
>KOG0273|consensus
Probab=52.76 E-value=2.7e+02 Score=28.34 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=72.2
Q ss_pred eeeec-CCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEE
Q psy17325 155 AYDWI-GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTII 233 (461)
Q Consensus 155 avd~~-~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~ 233 (461)
++||. .|++..+-.-++.+...+.+|....++.... .|. ++|=+.+.+.+|.-.+ .+...|..-...|+..+.
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~Hk--gPI-~slKWnk~G~yilS~~-vD~ttilwd~~~g~~~q~-- 313 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHK--GPI-FSLKWNKKGTYILSGG-VDGTTILWDAHTGTVKQQ-- 313 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccC--Cce-EEEEEcCCCCEEEecc-CCccEEEEeccCceEEEe--
Confidence 56775 4778888888899999999997665553311 121 2222221111222222 111222222222322111
Q ss_pred ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC
Q psy17325 234 STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ 313 (461)
Q Consensus 234 ~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~ 313 (461)
..+...-+|.|||.+..=|.+-... +.|++.++++.....-+...
T Consensus 314 -f~~~s~~~lDVdW~~~~~F~ts~td----------------------------------~~i~V~kv~~~~P~~t~~GH 358 (524)
T KOG0273|consen 314 -FEFHSAPALDVDWQSNDEFATSSTD----------------------------------GCIHVCKVGEDRPVKTFIGH 358 (524)
T ss_pred -eeeccCCccceEEecCceEeecCCC----------------------------------ceEEEEEecCCCcceeeecc
Confidence 1233334688898887777665544 35777777766543333222
Q ss_pred --eeeeEEEeccCCeEEEeecC
Q psy17325 314 --LYEALALDLENGMLYYSTLK 333 (461)
Q Consensus 314 --~p~~iavd~~~~~lY~t~~~ 333 (461)
...+|-.+|. +.|.-|-+.
T Consensus 359 ~g~V~alk~n~t-g~LLaS~Sd 379 (524)
T KOG0273|consen 359 HGEVNALKWNPT-GSLLASCSD 379 (524)
T ss_pred cCceEEEEECCC-CceEEEecC
Confidence 2889999975 445444443
No 200
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=52.76 E-value=2.8e+02 Score=28.63 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=34.6
Q ss_pred eEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCC
Q psy17325 372 GLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 372 glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
.+++ .++.||+.+ ..+.|+.++.+ +|...-..... .... ..|+.+ ..++++|+.....
T Consensus 401 ~~~~--~g~~v~~g~-~dG~l~ald~~-tG~~lW~~~~~-~~~~--------a~P~~~-~~~g~~yv~~~~g 458 (488)
T cd00216 401 SLAT--AGNLVFAGA-ADGYFRAFDAT-TGKELWKFRTP-SGIQ--------ATPMTY-EVNGKQYVGVMVG 458 (488)
T ss_pred ceEe--cCCeEEEEC-CCCeEEEEECC-CCceeeEEECC-CCce--------EcCEEE-EeCCEEEEEEEec
Confidence 3555 678899886 46789988884 67654322211 1111 124443 4478999987655
No 201
>KOG4328|consensus
Probab=52.10 E-value=1.1e+02 Score=30.68 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCceEEEeecCCCeEE---------EeeC--CCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCC
Q psy17325 346 NPRIERIGMDGSNRST---------IIST--KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGR 402 (461)
Q Consensus 346 ~~~I~~~~~dG~~~~~---------l~~~--~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~ 402 (461)
..+|+...+||+.+-. +... .-.+-.++.+...+..+|+.|... ....+++.-+|.
T Consensus 247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s 313 (498)
T KOG4328|consen 247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGS 313 (498)
T ss_pred hhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCc
Confidence 3455555566554433 2222 223445566665667777776543 555566533343
No 202
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=51.40 E-value=8 Score=24.17 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=10.9
Q ss_pred CceeCC-CCceEeCCCCCee
Q psy17325 43 TCHPTP-LGALCTCPPGEIL 61 (461)
Q Consensus 43 ~C~~~~-~~~~C~C~~G~~l 61 (461)
.|.+.. +++.|.|..||..
T Consensus 12 ~C~~~~dG~eecrCllgyk~ 31 (37)
T PF12946_consen 12 GCFRYDDGSEECRCLLGYKK 31 (37)
T ss_dssp EEEEETTSEEEEEE-TTEEE
T ss_pred ccEEcCCCCEEEEeeCCccc
Confidence 455544 5566777777754
No 203
>KOG0650|consensus
Probab=50.79 E-value=33 Score=35.59 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=42.2
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCC
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
..|..+.++|..- +||++. ...-+| .++.-.....-+.++..+...|+|++.+.+|.......
T Consensus 567 G~vq~v~FHPs~p--~lfVaT-q~~vRi--YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 567 GLVQRVKFHPSKP--YLFVAT-QRSVRI--YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred CceeEEEecCCCc--eEEEEe-ccceEE--EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 4588899999977 999987 222333 34432221111234677899999999999998877654
No 204
>PTZ00420 coronin; Provisional
Probab=50.55 E-value=3.3e+02 Score=28.83 Aligned_cols=62 Identities=6% Similarity=0.027 Sum_probs=33.3
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC--cE------EEEecccccceeEEeeccCCeeEEec
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN--RS------TIISTKIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~--~~------~i~~~~~~~P~glavD~~~~~ly~~d 256 (461)
.....+++.|..+ .++.+- +....|...++.... .. ..+.........+++.+....+..+-
T Consensus 75 ~~V~~lafsP~~~--~lLASg-S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 75 SSILDLQFNPCFS--EILASG-SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred CCEEEEEEcCCCC--CEEEEE-eCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 4577888888654 455554 344566666654211 11 11222233466788887666555443
No 205
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=49.58 E-value=2.2e+02 Score=26.45 Aligned_cols=100 Identities=22% Similarity=0.271 Sum_probs=58.2
Q ss_pred eeeeeeeecCCeEEEEe--CCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCC-CcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLD--SRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGEN-PRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d--~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~-~~I~~~~~dG~ 227 (461)
+...|+...++.+.++. .....+.+...++.....+-...+..| .+|+. + .++..+.+.. .++.+...+|+
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~P---S~d~~-g--~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRP---SWDPD-G--WVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccc---cccCC-C--CEEEEEcCCCceEEEEecCCCc
Confidence 45566666666666655 556677777777766655533444444 68887 6 7877763332 22222223454
Q ss_pred CcEEEEec-ccc-cceeEEeeccCCeeEEec
Q psy17325 228 NRSTIIST-KIY-WPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 228 ~~~~i~~~-~~~-~P~glavD~~~~~ly~~d 256 (461)
....-+.. .+. ....|++.+.+.|+-+.-
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence 44333332 222 567899988888875543
No 206
>KOG0315|consensus
Probab=48.62 E-value=2.3e+02 Score=26.40 Aligned_cols=129 Identities=9% Similarity=0.035 Sum_probs=71.5
Q ss_pred EEEeCCCCeEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe--cccccc
Q psy17325 164 YWLDSRLNRIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS--TKIYWP 240 (461)
Q Consensus 164 y~~d~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~--~~~~~P 240 (461)
.++-+-+.+|....+. |.-..++.. .-.+...|.+-|.++ +|-.+ .++.|...+++..+...+.. ......
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh-~dsqVNrLeiTpdk~--~LAaa---~~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQH-PDSQVNRLEITPDKK--DLAAA---GNQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEec-CccceeeEEEcCCcc--hhhhc---cCCeeEEEEccCCCCCceeEEeccCCce
Confidence 3344445667766644 444444433 336788899999866 55443 35677777777665533332 222345
Q ss_pred eeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEE
Q psy17325 241 NGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALA 319 (461)
Q Consensus 241 ~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~ia 319 (461)
..+.+...++.+|=.. ..+ ++..-++..-...-++.... .+.+.
T Consensus 87 taVgF~~dgrWMyTgs-eDg----------------------------------t~kIWdlR~~~~qR~~~~~spVn~vv 131 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGS-EDG----------------------------------TVKIWDLRSLSCQRNYQHNSPVNTVV 131 (311)
T ss_pred EEEEEeecCeEEEecC-CCc----------------------------------eEEEEeccCcccchhccCCCCcceEE
Confidence 5666666566666332 222 23333333322222332223 67788
Q ss_pred EeccCCeEEEeecC
Q psy17325 320 LDLENGMLYYSTLK 333 (461)
Q Consensus 320 vd~~~~~lY~t~~~ 333 (461)
+.|..+.|+..|..
T Consensus 132 lhpnQteLis~dqs 145 (311)
T KOG0315|consen 132 LHPNQTELISGDQS 145 (311)
T ss_pred ecCCcceEEeecCC
Confidence 89988888887764
No 207
>PHA02713 hypothetical protein; Provisional
Probab=47.34 E-value=3.7e+02 Score=28.39 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=45.1
Q ss_pred CceEEEeecCCCeEEEeeCCCC---CceeEEEecCCCeEEEEcCCC------CeEEEEEecCCCCeEEEEEccccceeec
Q psy17325 347 PRIERIGMDGSNRSTIISTKIY---WPNGLTLDIATRRVYFADSKL------DFIDFCNYDGTGRQQVILIDLMVEFTND 417 (461)
Q Consensus 347 ~~I~~~~~dG~~~~~l~~~~l~---~p~glaiD~~~~~ly~~d~~~------~~I~~~~~~g~g~~~~~~~~~~~~~~~~ 417 (461)
..+++.+..-..-+.+. .+. ...++++ .+++||+.-... ..+++.++..+..- ..+.. .+...
T Consensus 432 ~~ve~YDP~td~W~~v~--~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W-~~~~~-m~~~r-- 503 (557)
T PHA02713 432 NKVIRYDTVNNIWETLP--NFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW-ELITT-TESRL-- 503 (557)
T ss_pred ceEEEECCCCCeEeecC--CCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCe-eEccc-cCccc--
Confidence 45777766554433332 222 2235565 679999984321 34678887210233 32222 22111
Q ss_pred cCCCCCcceEEEeeeCCEEEEEeCCCc
Q psy17325 418 LMGDNGVPALALDLENGMLYYSTEGAE 444 (461)
Q Consensus 418 ~~~~~~~~~~~l~~~~~~lYwtd~~~~ 444 (461)
...++++.+++||++-..++
T Consensus 504 -------~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 -------SALHTILHDNTIMMLHCYES 523 (557)
T ss_pred -------ccceeEEECCEEEEEeeecc
Confidence 14678888999999865444
No 208
>KOG1225|consensus
Probab=46.86 E-value=25 Score=36.44 Aligned_cols=37 Identities=30% Similarity=0.777 Sum_probs=22.2
Q ss_pred ceEeCCCCCeecCCCCceecCcceecCCcccCceeeccCCccccCCCCeee
Q psy17325 51 ALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVL 101 (461)
Q Consensus 51 ~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l 101 (461)
-.|.|.+||. +..|.... |...+. |++ + |.|..||+-
T Consensus 327 G~C~C~~Gy~----G~~C~~~~-C~~~g~----cv~---g--C~C~~Gw~G 363 (525)
T KOG1225|consen 327 GECLCDEGYT----GELCIQRA-CSGGGQ----CVN---G--CKCKKGWRG 363 (525)
T ss_pred CceEeCCCCc----CCcccccc-cCCCce----ecc---C--ceeccCccC
Confidence 4688888885 56665443 433333 322 1 788888863
No 209
>PLN00181 protein SPA1-RELATED; Provisional
Probab=45.58 E-value=4.6e+02 Score=29.00 Aligned_cols=73 Identities=7% Similarity=0.059 Sum_probs=45.4
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
+.++++.+..++...+-..++.|.+.+.........+...-....+++++|..+ .++++- +....|...++..
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~--~~L~Sg-s~Dg~v~iWd~~~ 607 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADP--TLLASG-SDDGSVKLWSINQ 607 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCC--CEEEEE-cCCCEEEEEECCC
Confidence 344555444455566666688999999775544433443334577899987656 566665 4456677777653
No 210
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=44.04 E-value=2.7e+02 Score=25.93 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=23.5
Q ss_pred CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 365 TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 365 ~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
........|..+|.+++||.=|-+.-.++.+.+
T Consensus 216 ~~~~~~~~l~YNP~dk~LY~wd~G~~v~Y~v~f 248 (250)
T PF02191_consen 216 NPYGNISMLSYNPRDKKLYAWDNGYQVTYDVRF 248 (250)
T ss_pred cccCceEeeeECCCCCeEEEEECCeEEEEEEEe
Confidence 445566779999999999988776555554443
No 211
>KOG0276|consensus
Probab=43.74 E-value=4.3e+02 Score=28.10 Aligned_cols=242 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred eeecCCe---EEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-------
Q psy17325 156 YDWIGGH---IYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD------- 225 (461)
Q Consensus 156 vd~~~~~---ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d------- 225 (461)
||..++- -.++-+.+..|.+.|...+.+...+.+...+...+.++|.-- |+.+- ++.+.+.--...
T Consensus 189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp---iiisg-sEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP---IIISG-SEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred EEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc---EEEEe-cCCccEEEecCcceehhhh
Q ss_pred ---CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 226 ---GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 226 ---G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
|..|.--+.. ...-.-+++-+.++.+.+--......-+|+- -++|.|+-.+. |..+++.
T Consensus 265 Ln~gleRvW~I~~-~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~-----------~gKIiwa~~~e------i~~~~~k 326 (794)
T KOG0276|consen 265 LNYGLERVWCIAA-HKGDGKIAVGFDEGSVTVKLGREEPAVSMDS-----------NGKIIWAVHSE------IQAVNLK 326 (794)
T ss_pred hhcCCceEEEEee-cCCCCeEEEeccCCcEEEEccCCCCceeecC-----------CccEEEEcCce------eeeeece
Q ss_pred CCceEEEEeCCe---------------eeeEEEeccCCeEEEeecCceeeEEEee---------------cCCCCceEEE
Q psy17325 303 GSNASILVSGQL---------------YEALALDLENGMLYYSTLKCTRWLFWTD---------------WGENPRIERI 352 (461)
Q Consensus 303 g~~~~~l~~~~~---------------p~~iavd~~~~~lY~t~~~~~~~l~~~d---------------~~~~~~I~~~ 352 (461)
.-....-+.++. |.-|+..|.++.+-+...+ .|+.+|. |...+..+..
T Consensus 327 s~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdG--EyiIyTala~RnK~fG~~~eFvw~~dsne~av 404 (794)
T KOG0276|consen 327 SVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDG--EYIIYTALALRNKAFGSGLEFVWAADSNEFAV 404 (794)
T ss_pred eccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCc--cEEEEEeeehhhcccccceeEEEcCCCCeEEE
Q ss_pred eecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee
Q psy17325 353 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE 432 (461)
Q Consensus 353 ~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 432 (461)
.-..++...+ .++..-..+.++..-.+|| .+.+--+.. ++.....--+...-.. -|.+.
T Consensus 405 Res~~~vki~--knfke~ksi~~~~~~e~i~-----gg~Llg~~s--s~~~~fydW~~~~lVr------------rI~v~ 463 (794)
T KOG0276|consen 405 RESNGNVKIF--KNFKEHKSIRPDMSAEGIF-----GGPLLGVRS--SDFLCFYDWESGELVR------------RIEVT 463 (794)
T ss_pred EecCCceEEE--ecceeccccccccceeeec-----CCceEEEEe--CCeEEEEEcccceEEE------------EEeec
Q ss_pred CCEEEEEeCC
Q psy17325 433 NGMLYYSTEG 442 (461)
Q Consensus 433 ~~~lYwtd~~ 442 (461)
.+.|||+|.+
T Consensus 464 ~k~v~w~d~g 473 (794)
T KOG0276|consen 464 SKHVYWSDNG 473 (794)
T ss_pred cceeEEecCC
No 212
>KOG2106|consensus
Probab=42.16 E-value=4.1e+02 Score=27.42 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec-----ccc
Q psy17325 164 YWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST-----KIY 238 (461)
Q Consensus 164 y~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~-----~~~ 238 (461)
...-...+.|..-+++.....++.... ..-.|+|.+|... +|.|. +....+..-+-.-.....++.. .+.
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~-delwgla~hps~~---q~~T~-gqdk~v~lW~~~k~~wt~~~~d~~~~~~fh 416 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHG-DELWGLATHPSKN---QLLTC-GQDKHVRLWNDHKLEWTKIIEDPAECADFH 416 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEecc-cceeeEEcCCChh---heeec-cCcceEEEccCCceeEEEEecCceeEeecc
Q ss_pred cceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeE
Q psy17325 239 WPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEAL 318 (461)
Q Consensus 239 ~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~i 318 (461)
--.-||+-..+++.++.|..+ ........+++...++--...-.-+
T Consensus 417 psg~va~Gt~~G~w~V~d~e~----------------------------------~~lv~~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 417 PSGVVAVGTATGRWFVLDTET----------------------------------QDLVTIHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred CcceEEEeeccceEEEEeccc----------------------------------ceeEEEEecCCceEEEEEcCCCCEE
Q ss_pred EEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeE
Q psy17325 319 ALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 319 avd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~l 382 (461)
|+-..++.|| |+|++-+|.....+-.-....-..|....+++.|
T Consensus 463 Avgs~d~~iy--------------------iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 463 AVGSHDNHIY--------------------IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred EEecCCCeEE--------------------EEEECCCCcEEEEeeeecCceeEEeeecCCCceE
No 213
>KOG0268|consensus
Probab=42.07 E-value=3.5e+02 Score=26.64 Aligned_cols=79 Identities=9% Similarity=0.110 Sum_probs=45.7
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-CCCCCceeEEEecCCCeEEEEcCCCCeEE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADSKLDFID 393 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-~~l~~p~glaiD~~~~~ly~~d~~~~~I~ 393 (461)
+++|...| +...|++-.. ...++-.+|---.+.+-+. ........+.+. ..|+=+++-+....|.
T Consensus 232 TN~IswnP-eafnF~~a~E------------D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs-ptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 232 TNTICWNP-EAFNFVAANE------------DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS-PTGQEFVSGSYDKSIR 297 (433)
T ss_pred ccceecCc-cccceeeccc------------cccceehhhhhhcccchhhcccceeEEEeccC-CCcchhccccccceEE
Confidence 88999999 7777776554 5567666664333222110 111222233333 4577777877777888
Q ss_pred EEEecCCCCeEEEEE
Q psy17325 394 FCNYDGTGRQQVILI 408 (461)
Q Consensus 394 ~~~~~g~g~~~~~~~ 408 (461)
.+..+ .|..+-+..
T Consensus 298 If~~~-~~~SRdiYh 311 (433)
T KOG0268|consen 298 IFPVN-HGHSRDIYH 311 (433)
T ss_pred EeecC-CCcchhhhh
Confidence 88874 455544443
No 214
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=39.83 E-value=18 Score=24.64 Aligned_cols=21 Identities=38% Similarity=1.039 Sum_probs=15.8
Q ss_pred EeCCCCCeecCCCCceecCcce
Q psy17325 53 CTCPPGEILSNDSVTCQDMNEC 74 (461)
Q Consensus 53 C~C~~G~~l~~~~~~C~d~~eC 74 (461)
|.|++||.+..+ ..|....+|
T Consensus 35 C~C~~G~v~~~~-~~CV~~~~C 55 (55)
T PF01826_consen 35 CFCPPGYVRNDN-GRCVPPSEC 55 (55)
T ss_dssp EEETTTEEEETT-SEEEEGGGC
T ss_pred CCCCCCeeEcCC-CCEEcHHHC
Confidence 899999987554 678766554
No 215
>PTZ00486 apyrase Superfamily; Provisional
Probab=37.80 E-value=1.3e+02 Score=29.39 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCCCeEEEEEecCCCCeE-EEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCC
Q psy17325 378 ATRRVYFADSKLDFIDFCNYDGTGRQQ-VILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~ 442 (461)
.+++||-.|-+++.|+.+..+++...+ +++.++..... .+...--.++.++.||+=-.+
T Consensus 123 FngkLys~DDrTGiVy~i~~~~~~~~PwvIL~dGdG~~~------kGfK~EWaTVKd~~LyVGs~G 182 (352)
T PTZ00486 123 FNGKLYGFDDRTGIVYEIDIDKKKAYPRHILSDGNGNSD------KGMKIEWATVYDDKLYVGSIG 182 (352)
T ss_pred eCCEEEEEeCCceEEEEEEcCCCcEeeEEEEecCCCCCC------CCcceeeEEEECCEEEEeccc
Confidence 789999999999999999874332333 44444332121 122345677889999984443
No 216
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=37.47 E-value=6.1e+02 Score=28.07 Aligned_cols=101 Identities=20% Similarity=0.163 Sum_probs=51.0
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC-CCeEEE
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK-LDFIDF 394 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~-~~~I~~ 394 (461)
..+++|+..+.+||-..+ +.- +.-|..++.. .++..-.=+|+|..+|++-|.-.. .+-++=
T Consensus 378 ~~~s~D~~~glvy~ptGn-------------~~p---d~~g~~r~~~--~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD 439 (764)
T TIGR03074 378 SVASYDEKLGLVYLPMGN-------------QTP---DQWGGDRTPA--DEKYSSSLVALDATTGKERWVFQTVHHDLWD 439 (764)
T ss_pred CceEEcCCCCeEEEeCCC-------------ccc---cccCCccccC--cccccceEEEEeCCCCceEEEecccCCcccc
Confidence 467999999999985432 100 1112222211 123334447899999999887433 344553
Q ss_pred EEecCCCCeEEEEEccc--cceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 395 CNYDGTGRQQVILIDLM--VEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 395 ~~~~g~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
.|+ ... .++.+.. .+.. .+.+.....+|.+|+-|..++..
T Consensus 440 ~D~---~~~-p~L~d~~~~~G~~--------~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 440 MDV---PAQ-PSLVDLPDADGTT--------VPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccc---cCC-ceEEeeecCCCcE--------eeEEEEECCCCEEEEEECCCCCE
Confidence 333 222 1222110 1100 11233334567888888887644
No 217
>KOG3881|consensus
Probab=37.18 E-value=2.8e+02 Score=27.43 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=50.7
Q ss_pred cceeEEEeccccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEE-ecCCCC
Q psy17325 114 SAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVL-AKDNIT 192 (461)
Q Consensus 114 ~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l-~~~~~~ 192 (461)
+..|...+..++++..+...+ ..|-..+...-.-...++.++.++.||++|.. +.+..+|+.+...... ..+.-.
T Consensus 216 ~~~fat~T~~hqvR~YDt~~q---RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQ---RRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CceEEEEecceeEEEecCccc---CcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeeccccCCccC
Confidence 344555555566655544322 11222222221223457778888899999884 7788888877654333 233345
Q ss_pred CceeEEEcCCCC
Q psy17325 193 QPRGMMLDPSPG 204 (461)
Q Consensus 193 ~p~~ia~d~~~g 204 (461)
.+++|..+|...
T Consensus 292 sirsih~hp~~~ 303 (412)
T KOG3881|consen 292 SIRSIHCHPTHP 303 (412)
T ss_pred CcceEEEcCCCc
Confidence 699999999755
No 218
>KOG0263|consensus
Probab=36.64 E-value=5.8e+02 Score=27.59 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=99.9
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCC--CcEEEEecCCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGEN--PRIERIGMDGSN 228 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~--~~I~~~~~dG~~ 228 (461)
+.|..+.+ .++.-++-+.+..+....++.....+...+...-...+.+.|. | .||+..+.. .+++..+. ..
T Consensus 454 Vyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-G---yYFatas~D~tArLWs~d~--~~ 526 (707)
T KOG0263|consen 454 VYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-G---YYFATASHDQTARLWSTDH--NK 526 (707)
T ss_pred eeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-c---eEEEecCCCceeeeeeccc--CC
Confidence 34556654 3444455566678888888887777777665444455667765 6 555542322 33333222 22
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC-CCCceE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM-DGSNAS 307 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~-~g~~~~ 307 (461)
...+....+.-...+++.|... |.+....++ ++..-+. .|..++
T Consensus 527 PlRifaghlsDV~cv~FHPNs~--Y~aTGSsD~---------------------------------tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSN--YVATGSSDR---------------------------------TVRLWDVSTGNSVR 571 (707)
T ss_pred chhhhcccccccceEEECCccc--ccccCCCCc---------------------------------eEEEEEcCCCcEEE
Confidence 2233334454555577776433 444443332 2333332 233333
Q ss_pred EEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-CCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 308 ILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-SNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 308 ~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
+. .+.. ..++++.|.++.|--.+ +.+.|.--++.+ +....+. ..-.....|++. .+|.+.+
T Consensus 572 iF-~GH~~~V~al~~Sp~Gr~LaSg~-------------ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS-~dg~vLa 635 (707)
T KOG0263|consen 572 IF-TGHKGPVTALAFSPCGRYLASGD-------------EDGLIKIWDLANGSLVKQLK-GHTGTIYSLSFS-RDGNVLA 635 (707)
T ss_pred Ee-cCCCCceEEEEEcCCCceEeecc-------------cCCcEEEEEcCCCcchhhhh-cccCceeEEEEe-cCCCEEE
Confidence 33 3333 67888888655443221 234444444433 2233333 234445667776 5677778
Q ss_pred EcCCCCeEEEEEe
Q psy17325 385 ADSKLDFIDFCNY 397 (461)
Q Consensus 385 ~d~~~~~I~~~~~ 397 (461)
+....+.|..-|+
T Consensus 636 sgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 636 SGGADNSVRLWDL 648 (707)
T ss_pred ecCCCCeEEEEEc
Confidence 8787787777776
No 219
>KOG0650|consensus
Probab=36.18 E-value=5.5e+02 Score=27.17 Aligned_cols=97 Identities=13% Similarity=0.269 Sum_probs=63.1
Q ss_pred EEEEEecCCCCcceeeeEEeCCCCceEEEEeCC--------------eeeeEEEeccCCeEEEeecCceeeEEEeecCCC
Q psy17325 281 KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ--------------LYEALALDLENGMLYYSTLKCTRWLFWTDWGEN 346 (461)
Q Consensus 281 ~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~--------------~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~ 346 (461)
.+=|=..+.. +..+-.++..+.+++... .|..+.+.|..-.|+++...
T Consensus 526 ~vtWHrkGDY-----latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~------------- 587 (733)
T KOG0650|consen 526 QVTWHRKGDY-----LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR------------- 587 (733)
T ss_pred eeeeecCCce-----EEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-------------
Confidence 4555555553 555556666666665431 16778889988888888665
Q ss_pred CceEEEeecCC-CeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 347 PRIERIGMDGS-NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 347 ~~I~~~~~dG~-~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
.|.-.++--. -.+.+. ++..|-.+|+|++.+.+|... ...+++--+++|
T Consensus 588 -~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GDnli~g-s~d~k~~WfDld 637 (733)
T KOG0650|consen 588 -SVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGDNLILG-SYDKKMCWFDLD 637 (733)
T ss_pred -ceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCCeEEEe-cCCCeeEEEEcc
Confidence 3444444322 222334 788899999999888888776 556778888885
No 220
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=35.29 E-value=25 Score=27.97 Aligned_cols=29 Identities=31% Similarity=0.933 Sum_probs=19.2
Q ss_pred CcceecCCcccC--ceeeccCCccccCCCCee
Q psy17325 71 MNECEQPGYCSQ--MCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 71 ~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~ 100 (461)
.+.|...+.|.. .|. ......|.|.+||.
T Consensus 77 ~d~Cd~y~~CG~~g~C~-~~~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 77 KDQCDVYGFCGPNGICN-SNNSPKCSCLPGFE 107 (110)
T ss_pred ccCCCCccccCCccEeC-CCCCCceECCCCcC
Confidence 456665566653 673 33456799999995
No 221
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=35.27 E-value=21 Score=31.11 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=15.5
Q ss_pred cCCCCCCCCCCCC---CCCCCCC
Q psy17325 5 CVNLTKVCDGKTD---CPNGADE 24 (461)
Q Consensus 5 Ci~~~~~Cd~~~d---C~dg~de 24 (461)
-|+.++|=||..| |=|||||
T Consensus 88 ~i~~s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 88 YIPSSRVNDGICDYDICCDGSDE 110 (176)
T ss_pred eeehhhhcCCcCcccccCCCCCC
Confidence 4667777778888 8888888
No 222
>PHA02887 EGF-like protein; Provisional
Probab=35.18 E-value=33 Score=27.51 Aligned_cols=23 Identities=22% Similarity=0.660 Sum_probs=13.6
Q ss_pred ceeCC--CCceEeCCCCCeecCCCCceec
Q psy17325 44 CHPTP--LGALCTCPPGEILSNDSVTCQD 70 (461)
Q Consensus 44 C~~~~--~~~~C~C~~G~~l~~~~~~C~d 70 (461)
|.-.+ ..+.|.|+.||. |..|+.
T Consensus 99 C~yI~dL~epsCrC~~GYt----G~RCE~ 123 (126)
T PHA02887 99 CMNIIDLDEKFCICNKGYT----GIRCDE 123 (126)
T ss_pred EEccccCCCceeECCCCcc----cCCCCc
Confidence 54433 446788888874 455653
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=34.86 E-value=3.2e+02 Score=24.11 Aligned_cols=123 Identities=9% Similarity=-0.003 Sum_probs=61.2
Q ss_pred cEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeee
Q psy17325 218 RIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIG 297 (461)
Q Consensus 218 ~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~ 297 (461)
.|++++..+.....+-...-.....++-.|.+.++.+...... ..|.
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~---------------------------------~~v~ 86 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMP---------------------------------AKVT 86 (194)
T ss_pred EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCC---------------------------------cccE
Confidence 4555555544433332222223566777777777665543221 1244
Q ss_pred EEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEec
Q psy17325 298 KANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 377 (461)
Q Consensus 298 ~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~ 377 (461)
..++.+.....+.. ...+.|...|.+..|..+..+ ..++.|.-.+++ ..+.+..........++.++
T Consensus 87 lyd~~~~~i~~~~~-~~~n~i~wsP~G~~l~~~g~~----------n~~G~l~~wd~~--~~~~i~~~~~~~~t~~~WsP 153 (194)
T PF08662_consen 87 LYDVKGKKIFSFGT-QPRNTISWSPDGRFLVLAGFG----------NLNGDLEFWDVR--KKKKISTFEHSDATDVEWSP 153 (194)
T ss_pred EEcCcccEeEeecC-CCceEEEECCCCCEEEEEEcc----------CCCcEEEEEECC--CCEEeeccccCcEEEEEEcC
Confidence 44444333333221 125678888887766665433 012344444444 33444433444467777886
Q ss_pred CCCeEEEEc
Q psy17325 378 ATRRVYFAD 386 (461)
Q Consensus 378 ~~~~ly~~d 386 (461)
++..|..+.
T Consensus 154 dGr~~~ta~ 162 (194)
T PF08662_consen 154 DGRYLATAT 162 (194)
T ss_pred CCCEEEEEE
Confidence 666665553
No 224
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=34.72 E-value=59 Score=21.75 Aligned_cols=11 Identities=45% Similarity=0.984 Sum_probs=8.1
Q ss_pred cccCCCCeeee
Q psy17325 92 ICSCNEGYVLE 102 (461)
Q Consensus 92 ~C~C~~g~~l~ 102 (461)
.|.|++||...
T Consensus 38 ~C~C~~g~~~~ 48 (52)
T PF01683_consen 38 RCQCPPGYVEV 48 (52)
T ss_pred EeECCCCCEec
Confidence 68888887644
No 225
>KOG0278|consensus
Probab=33.68 E-value=4e+02 Score=24.88 Aligned_cols=123 Identities=14% Similarity=0.127 Sum_probs=68.8
Q ss_pred CCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeE
Q psy17325 303 GSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 303 g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~l 382 (461)
|+....|.....+..+.+.+.++.|-.++.+ +..||.-.. -..|...+|--. ...-.+. .++.+
T Consensus 175 gt~v~sL~~~s~VtSlEvs~dG~ilTia~gs--sV~Fwdaks-f~~lKs~k~P~n------------V~SASL~-P~k~~ 238 (334)
T KOG0278|consen 175 GTEVQSLEFNSPVTSLEVSQDGRILTIAYGS--SVKFWDAKS-FGLLKSYKMPCN------------VESASLH-PKKEF 238 (334)
T ss_pred CcEEEEEecCCCCcceeeccCCCEEEEecCc--eeEEecccc-ccceeeccCccc------------ccccccc-CCCce
Confidence 3333444333338888898877766666554 566664211 122222222110 1112233 34588
Q ss_pred EEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceeecceeEE
Q psy17325 383 YFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLKTPLFCI 453 (461)
Q Consensus 383 y~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~~~~~~ 453 (461)
|++-.....++++|++ +|..+.....+..+ |..++.+. +|.+|-+-+..++||.=+-+.
T Consensus 239 fVaGged~~~~kfDy~-TgeEi~~~nkgh~g-----------pVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYN-TGEEIGSYNKGHFG-----------PVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EEecCcceEEEEEecc-CCceeeecccCCCC-----------ceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 9998888899999995 67664442222222 23455554 578999988889998655443
No 226
>KOG3914|consensus
Probab=33.55 E-value=4.9e+02 Score=25.83 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=57.8
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec-CCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 393 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d-G~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~ 393 (461)
|++|.+......+-+++.. |....+.....+ |..+.. + ..+.--..+++.+++.+|.-+|.. .+|+
T Consensus 110 ~~ai~~~~~~~sv~v~dka----------gD~~~~di~s~~~~~~~~~-l-GhvSml~dVavS~D~~~IitaDRD-EkIR 176 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKA----------GDVYSFDILSADSGRCEPI-L-GHVSMLLDVAVSPDDQFIITADRD-EKIR 176 (390)
T ss_pred cceeeeeeccceEEEEeec----------CCceeeeeecccccCcchh-h-hhhhhhheeeecCCCCEEEEecCC-ceEE
Confidence 7777777666655555543 111122222222 333222 2 455566788998888888888864 5777
Q ss_pred EEEecCCCCeEE-EEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceeec
Q psy17325 394 FCNYDGTGRQQV-ILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 394 ~~~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
..++ .+.... .+..+.. ++ .-.|++..+++.|+-.+.+++|.
T Consensus 177 vs~y--pa~f~IesfclGH~----eF-------VS~isl~~~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 177 VSRY--PATFVIESFCLGHK----EF-------VSTISLTDNYLLLSGSGDKTLRL 219 (390)
T ss_pred EEec--CcccchhhhccccH----hh-------eeeeeeccCceeeecCCCCcEEE
Confidence 7777 333211 1111111 11 12456666677777777777653
No 227
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.34 E-value=4.5e+02 Score=25.34 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=37.1
Q ss_pred eeeecCCeEEEEe----CCCCeEEEEeCCCCcEEE-EecCCCCCceeEEEcCCCCceEEEEee
Q psy17325 155 AYDWIGGHIYWLD----SRLNRIEVCDENGTNRIV-LAKDNITQPRGMMLDPSPGTRWLFWTD 212 (461)
Q Consensus 155 avd~~~~~ly~~d----~~~~~I~~~~~~G~~~~~-l~~~~~~~p~~ia~d~~~g~~~ly~td 212 (461)
++...++.||.|. .+.+.|-+.+.....+++ -....-..|..|.+.|... .|-++.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~--tLvVAN 117 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE--TLVVAN 117 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC--EEEEEc
Confidence 3444577888875 446789999988443322 2222224699999999866 788876
No 228
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=32.76 E-value=7.2e+02 Score=27.51 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=12.0
Q ss_pred eEEeeccCCeeEEecC
Q psy17325 242 GLTLDIATRRVYFADS 257 (461)
Q Consensus 242 glavD~~~~~ly~~d~ 257 (461)
.+++|+..+.+||.-.
T Consensus 379 ~~s~D~~~glvy~ptG 394 (764)
T TIGR03074 379 VASYDEKLGLVYLPMG 394 (764)
T ss_pred ceEEcCCCCeEEEeCC
Confidence 4688888888888543
No 229
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=32.42 E-value=70 Score=19.23 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=7.7
Q ss_pred ceEeCCCCCe
Q psy17325 51 ALCTCPPGEI 60 (461)
Q Consensus 51 ~~C~C~~G~~ 60 (461)
..|.|.+||.
T Consensus 19 g~C~C~~g~~ 28 (32)
T PF07974_consen 19 GRCVCDSGYT 28 (32)
T ss_pred CEEECCCCCc
Confidence 5788888885
No 230
>KOG0270|consensus
Probab=32.25 E-value=5.4e+02 Score=25.97 Aligned_cols=58 Identities=7% Similarity=0.003 Sum_probs=41.8
Q ss_pred eeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe
Q psy17325 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT 211 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t 211 (461)
..|+..+..++|..+-+..++|...+++-......+...-.+...++++|... .+..+
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLs 304 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLS 304 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc--eEEEe
Confidence 35666667788888888899999999887666655553335677888888766 44444
No 231
>KOG0284|consensus
Probab=32.04 E-value=3.1e+02 Score=27.35 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=44.7
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD 212 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td 212 (461)
....+|+.+ ++..|.+=+.+++|.+.+..-...+.++.+.--.++.++.+|..| .|+...
T Consensus 182 aIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--Liasgs 241 (464)
T KOG0284|consen 182 AIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIASGS 241 (464)
T ss_pred hhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeEEcc
Confidence 466788887 888999999999999998554444444454435699999999988 666543
No 232
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=31.49 E-value=3.6e+02 Score=30.07 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=54.6
Q ss_pred eeeEEEeecCCCCceEEEeecCCCeEEE-eeCCCCCceeEEEecCCCeEEE-E--cC--CCCeEEEEEecCCCCeEEEEE
Q psy17325 335 TRWLFWTDWGENPRIERIGMDGSNRSTI-ISTKIYWPNGLTLDIATRRVYF-A--DS--KLDFIDFCNYDGTGRQQVILI 408 (461)
Q Consensus 335 ~~~l~~~d~~~~~~I~~~~~dG~~~~~l-~~~~l~~p~glaiD~~~~~ly~-~--d~--~~~~I~~~~~~g~g~~~~~~~ 408 (461)
..+.|.+|. .++|.-++.||.+.+++ +... .....-++.+++++|=+ + +. +...|++-+++.+|...+.+-
T Consensus 319 tkiAfv~~~--~~~L~~~D~dG~n~~~ve~~~~-~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 319 AKLAFRNDV--TGNLAYIDYTKGASRAVEIEDT-ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred eeEEEEEcC--CCeEEEEecCCCCceEEEecCC-CceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence 446666663 34899999999988876 4221 11222345666666655 2 22 345688888876776644332
Q ss_pred ccccceeeccCCCCCcceEEEeeeC-C--EEEEEeCCCce
Q psy17325 409 DLMVEFTNDLMGDNGVPALALDLEN-G--MLYYSTEGAEF 445 (461)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~l~~~~-~--~lYwtd~~~~~ 445 (461)
-..... |+-=...+ + -+|+||.+++.
T Consensus 396 ve~aai-----------prwrv~e~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 396 VENAAI-----------PRWRVLENGDTVIVYVSDASNNK 424 (912)
T ss_pred cccccc-----------cceEecCCCCeEEEEEcCCCCCc
Confidence 111111 22222333 2 58999998874
No 233
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=31.44 E-value=48 Score=22.15 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=19.2
Q ss_pred CCCCCceeEEEecCCCeEEEEcC
Q psy17325 365 TKIYWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 365 ~~l~~p~glaiD~~~~~ly~~d~ 387 (461)
..-..|.||.+|...+.|.++-.
T Consensus 8 ~~~~LP~gLs~d~~tG~isGtp~ 30 (49)
T PF05345_consen 8 TGGGLPSGLSLDPSTGTISGTPT 30 (49)
T ss_pred CCCCCCCcEEEeCCCCEEEeecC
Confidence 45567999999999999999843
No 234
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=30.76 E-value=41 Score=27.47 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=7.7
Q ss_pred CCceEeCCCCCe
Q psy17325 49 LGALCTCPPGEI 60 (461)
Q Consensus 49 ~~~~C~C~~G~~ 60 (461)
..+.|.|..||.
T Consensus 65 ~~~~CrC~~GYt 76 (139)
T PHA03099 65 DGMYCRCSHGYT 76 (139)
T ss_pred CCceeECCCCcc
Confidence 456677777774
No 235
>KOG0289|consensus
Probab=30.50 E-value=5.8e+02 Score=25.79 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=38.6
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec-ccccceeEEeeccCCeeEEecCCCce
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST-KIYWPNGLTLDIATRRVYFADSKLDF 261 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~-~~~~P~glavD~~~~~ly~~d~~~~~ 261 (461)
....++.++|.+. |+.|++ ....-++.---+|....++..+ .--.-..+++.+ .+.||-+-...+.
T Consensus 304 ~~V~~ls~h~tge--YllsAs-~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~ 370 (506)
T KOG0289|consen 304 EPVTGLSLHPTGE--YLLSAS-NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGV 370 (506)
T ss_pred ccceeeeeccCCc--EEEEec-CCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCce
Confidence 3467899999977 999987 4333333333355554444332 111245677775 5777776665543
No 236
>KOG2048|consensus
Probab=29.95 E-value=7.1e+02 Score=26.62 Aligned_cols=192 Identities=12% Similarity=0.086 Sum_probs=101.8
Q ss_pred eeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC---CCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 154 LAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD---NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 154 iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~---~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
-|+.+.++.|-+.-...-+|++.+.++......+.. .+.....|.+--.+. ++|... .....++...+++...+
T Consensus 388 ~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~--k~~~~s-~~~~~le~~el~~ps~k 464 (691)
T KOG2048|consen 388 AAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKN--KLFLVS-KNIFSLEEFELETPSFK 464 (691)
T ss_pred eccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCc--eEEEEe-cccceeEEEEecCcchh
Confidence 345555555555555556777777777333333221 111223333333333 666655 33456677777765554
Q ss_pred EEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 231 TIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 231 ~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
.+... ......-|++.+.++.|-.++.. +.|++.++.+...
T Consensus 465 el~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~-----------------------------------g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 465 ELKSIQSQAKCPSISRLVVSSDGNYIAAISTR-----------------------------------GQIFVYNLETLES 509 (691)
T ss_pred hhhccccccCCCcceeEEEcCCCCEEEEEecc-----------------------------------ceEEEEEccccee
Confidence 44321 22344567888777777776643 3577788777665
Q ss_pred EEEEe-CCe-eeeEEEe-ccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEE-----------EeeCCCCCcee
Q psy17325 307 SILVS-GQL-YEALALD-LENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRST-----------IISTKIYWPNG 372 (461)
Q Consensus 307 ~~l~~-~~~-p~~iavd-~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~-----------l~~~~l~~p~g 372 (461)
..+.. ... ..++++. +..+.|-+++++ +.++-.++..++... .-.+-.....|
T Consensus 510 ~~l~~rln~~vTa~~~~~~~~~~lvvats~-------------nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~g 576 (691)
T KOG2048|consen 510 HLLKVRLNIDVTAAAFSPFVRNRLVVATSN-------------NQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPG 576 (691)
T ss_pred ecchhccCcceeeeeccccccCcEEEEecC-------------CeEEEEecchhhhhhhhhccccccccChhhcCCCCce
Confidence 55542 122 4555555 455666666654 344444442222111 11123345678
Q ss_pred EEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 373 LTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 373 laiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+.+|+.+...+|.- ..+-+..++.
T Consensus 577 isfd~~n~s~~~~~-~a~w~~~id~ 600 (691)
T KOG2048|consen 577 ISFDPKNSSRFIVY-DAHWSCLIDF 600 (691)
T ss_pred EEeCCCCccEEEEE-cCcEEEEEec
Confidence 99997776666663 3345666666
No 237
>KOG0294|consensus
Probab=29.76 E-value=5.2e+02 Score=24.98 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=47.2
Q ss_pred eeeeeeeecCCeEEEEe-CCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCce-EEEEeecCCCCcEEEEecCCCC
Q psy17325 151 VEGLAYDWIGGHIYWLD-SRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTR-WLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d-~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~-~ly~td~~~~~~I~~~~~dG~~ 228 (461)
...+||++ .|++. +.+.+|.+.|+.-......+-..-....++-+++..-.+ .|=-+ +.+.|...+... .
T Consensus 46 itavAVs~----~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s---dDG~i~iw~~~~-W 117 (362)
T KOG0294|consen 46 ITALAVSG----PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS---DDGHIIIWRVGS-W 117 (362)
T ss_pred eeEEEecc----eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec---CCCcEEEEEcCC-e
Confidence 45577764 45544 456789999987654322221112334555555432100 22222 223343333221 1
Q ss_pred cEEE--EecccccceeEEeeccCCeeEEecCCC
Q psy17325 229 RSTI--ISTKIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 229 ~~~i--~~~~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
..+ +...-...++|+|.| +++|-.+-...
T Consensus 118 -~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D 148 (362)
T KOG0294|consen 118 -ELLKSLKAHKGQVTDLSIHP-SGKLALSVGGD 148 (362)
T ss_pred -EEeeeecccccccceeEecC-CCceEEEEcCC
Confidence 111 112334588999997 56666555444
No 238
>KOG0196|consensus
Probab=29.74 E-value=42 Score=36.36 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=28.3
Q ss_pred ceEeCCCCCeecCCCCceecCccee--------cC---CcccC-ceeeccCCccccCCCCeee
Q psy17325 51 ALCTCPPGEILSNDSVTCQDMNECE--------QP---GYCSQ-MCTNTKGSYICSCNEGYVL 101 (461)
Q Consensus 51 ~~C~C~~G~~l~~~~~~C~d~~eC~--------~~---~~C~~-~C~~~~g~~~C~C~~g~~l 101 (461)
-.|.|.+||.....+..|+ .|. .. ..|.. .-....++..|.|..||--
T Consensus 259 G~C~C~aGye~~~~~~~C~---aCp~G~yK~~~~~~~C~~CP~~S~s~~ega~~C~C~~gyyR 318 (996)
T KOG0196|consen 259 GGCVCKAGYEEAENGKACQ---ACPPGTYKASQGDSLCLPCPPNSHSSSEGATSCTCENGYYR 318 (996)
T ss_pred CceeecCCCCcccCCCcce---eCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccc
Confidence 3588888886544566665 221 01 13332 2234567889999999743
No 239
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=29.33 E-value=2.4e+02 Score=26.90 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEE
Q psy17325 378 ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYS 439 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwt 439 (461)
.+++||-.|-+++.|+.+.. +-..+-+++....+... .+...--.++.++.||+=
T Consensus 62 FngkLys~DDrTGiVyeI~~--~~~vPwviL~dGdG~~~-----kGfK~EWaTVKd~~LyvG 116 (291)
T PF06079_consen 62 FNGKLYSFDDRTGIVYEIKG--DKAVPWVILSDGDGNTS-----KGFKAEWATVKDDKLYVG 116 (291)
T ss_dssp ETTEEEEEETTT-EEEEEET--TEEEEEEE-BSTTTTES-----SB----EEEEETTEEEEE
T ss_pred ECCEEeeeeCCCceEEEEeC--CceeceEEEeCCCCCcc-----ccccceeeEEeCCeeeec
Confidence 78999999999999999887 32222333332222220 112234567889999953
No 240
>KOG1524|consensus
Probab=29.12 E-value=6.8e+02 Score=26.13 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=39.2
Q ss_pred EEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 164 YWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 164 y~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
..+-..+|.|.+.+..|..+.++.... ...+..+.+|... .+.++. +.+-.|.-..++
T Consensus 119 Llt~GEDG~iKiWSrsGMLRStl~Q~~-~~v~c~~W~p~S~--~vl~c~-g~h~~IKpL~~n 176 (737)
T KOG1524|consen 119 LLTAGEDGVIKIWSRSGMLRSTVVQNE-ESIRCARWAPNSN--SIVFCQ-GGHISIKPLAAN 176 (737)
T ss_pred eeeecCCceEEEEeccchHHHHHhhcC-ceeEEEEECCCCC--ceEEec-CCeEEEeecccc
Confidence 355666789999999999888776533 4577888898876 666666 443333333333
No 241
>KOG3658|consensus
Probab=27.91 E-value=1.1e+02 Score=32.39 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=10.2
Q ss_pred ccCCCCCC-CCCceeCCCCceEeC
Q psy17325 33 CKHKFGLC-SNTCHPTPLGALCTC 55 (461)
Q Consensus 33 C~~~~~~C-~~~C~~~~~~~~C~C 55 (461)
|++.++.| ...|.-.+.+..|.|
T Consensus 512 CSpsqgpCC~~~Cqf~~~~~kc~~ 535 (764)
T KOG3658|consen 512 CSPSQGPCCTPNCQFHTSGEKCRE 535 (764)
T ss_pred cCCCCCCccCCcceeecccCeeec
Confidence 44444443 224544444444443
No 242
>KOG0272|consensus
Probab=27.50 E-value=6.5e+02 Score=25.33 Aligned_cols=194 Identities=7% Similarity=-0.029 Sum_probs=95.2
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCC-CceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP-GTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~-g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
.|.....--..+.+..|-+-.|...+.+...-.....+.+.-.+..++++.|.. + .=..|- .....+.-..+++..
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~--~~lat~-s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD--LNLATA-SADGTVKLWKLSQET 252 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc--cceeee-ccCCceeeeccCCCc
Confidence 343333333456677777777777777744334444455555678888888873 3 111121 222333333333321
Q ss_pred c-EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 229 R-STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 229 ~-~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
. ..+ .........+++.|.++.|-=+..... -+++ ++ -+..+
T Consensus 253 ~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~t---------------------------------WRlW--D~-~tk~E 295 (459)
T KOG0272|consen 253 PLQDL-EGHLARVSRVAFHPSGKFLGTASFDST---------------------------------WRLW--DL-ETKSE 295 (459)
T ss_pred chhhh-hcchhhheeeeecCCCceeeecccccc---------------------------------hhhc--cc-ccchh
Confidence 1 111 112345667888876655433322211 0111 11 12233
Q ss_pred EEEeCCe---eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 308 ILVSGQL---YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 308 ~l~~~~~---p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
.+..++. ..+|++.+.+ -|--|-.. ..-++|+-. -.|.....|. ..+....+++++ .+|...-
T Consensus 296 lL~QEGHs~~v~~iaf~~DG-SL~~tGGl----------D~~~RvWDl-Rtgr~im~L~-gH~k~I~~V~fs-PNGy~lA 361 (459)
T KOG0272|consen 296 LLLQEGHSKGVFSIAFQPDG-SLAATGGL----------DSLGRVWDL-RTGRCIMFLA-GHIKEILSVAFS-PNGYHLA 361 (459)
T ss_pred hHhhcccccccceeEecCCC-ceeeccCc----------cchhheeec-ccCcEEEEec-ccccceeeEeEC-CCceEEe
Confidence 4444433 6777777643 33322111 011222211 1344444444 567777888887 5677777
Q ss_pred EcCCCCeEEEEEe
Q psy17325 385 ADSKLDFIDFCNY 397 (461)
Q Consensus 385 ~d~~~~~I~~~~~ 397 (461)
+-+..+.+..-++
T Consensus 362 Tgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 362 TGSSDNTCKVWDL 374 (459)
T ss_pred ecCCCCcEEEeee
Confidence 7677777777677
No 243
>KOG0282|consensus
Probab=27.33 E-value=6.9e+02 Score=25.58 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=55.1
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-CCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-GSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-G~~ 228 (461)
.|.-+.+.+.+.++|++-..+++|...|........-....+.....|.+-+. | .=|++. .+...+...... +..
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~-g--~rFiss-SDdks~riWe~~~~v~ 376 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE-G--RRFISS-SDDKSVRIWENRIPVP 376 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC-C--ceEeee-ccCccEEEEEcCCCcc
Confidence 35556666667899999999999999887654321112233445566666654 3 244443 222222222221 111
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCcee
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 262 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i 262 (461)
...+.......--.|++.+ ++..+.+....++|
T Consensus 377 ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i 409 (503)
T KOG0282|consen 377 IKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYI 409 (503)
T ss_pred chhhcchhhccCcceecCC-CCCeehhhccCceE
Confidence 1222222222333467765 55666666655444
No 244
>KOG0994|consensus
Probab=26.17 E-value=94 Score=35.17 Aligned_cols=18 Identities=28% Similarity=0.816 Sum_probs=10.5
Q ss_pred ceeeccCCcccc-CCCCee
Q psy17325 83 MCTNTKGSYICS-CNEGYV 100 (461)
Q Consensus 83 ~C~~~~g~~~C~-C~~g~~ 100 (461)
.|.....++.|. |-.||.
T Consensus 877 ~CqD~T~G~~CdrCl~Gyy 895 (1758)
T KOG0994|consen 877 DCQDSTTGHSCDRCLDGYY 895 (1758)
T ss_pred cccccccccchhhhhcccc
Confidence 355556666663 666663
No 245
>KOG0994|consensus
Probab=25.81 E-value=1.3e+02 Score=34.22 Aligned_cols=14 Identities=43% Similarity=1.042 Sum_probs=10.8
Q ss_pred eEeCCCCCeecCCCCcee
Q psy17325 52 LCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 52 ~C~C~~G~~l~~~~~~C~ 69 (461)
.|.|.+|| ++++|.
T Consensus 1085 QCqCkpGf----GGR~C~ 1098 (1758)
T KOG0994|consen 1085 QCQCKPGF----GGRTCS 1098 (1758)
T ss_pred ceeccCCC----CCcchh
Confidence 68999999 466664
No 246
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=25.75 E-value=6.4e+02 Score=24.69 Aligned_cols=111 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred EEEeccCCeEEEeecCce-------------eeEEEeecCCCCceEEEee-cCCCeEEEeeCC-CCCceeEEEecCCCeE
Q psy17325 318 LALDLENGMLYYSTLKCT-------------RWLFWTDWGENPRIERIGM-DGSNRSTIISTK-IYWPNGLTLDIATRRV 382 (461)
Q Consensus 318 iavd~~~~~lY~t~~~~~-------------~~l~~~d~~~~~~I~~~~~-dG~~~~~l~~~~-l~~p~glaiD~~~~~l 382 (461)
.|+|+..+..-|+..... +.+|..++.. +++..+. +|+..=..-... ..+.....+ .++.+
T Consensus 81 ~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g--~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~--~~~~v 156 (370)
T COG1520 81 FALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG--KLYALDASTGTLVWSRNVGGSPYYASPPVV--GDGTV 156 (370)
T ss_pred EEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc--eEEEEECCCCcEEEEEecCCCeEEecCcEE--cCcEE
Q ss_pred EEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCC
Q psy17325 383 YFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442 (461)
Q Consensus 383 y~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~ 442 (461)
|+.. ..+.+..++.+ +|..+-....... +...+.+. |. +.++.+|++..+
T Consensus 157 ~~~s-~~g~~~al~~~-tG~~~W~~~~~~~-~~~~~~~~----~~---~~~~~vy~~~~~ 206 (370)
T COG1520 157 YVGT-DDGHLYALNAD-TGTLKWTYETPAP-LSLSIYGS----PA---IASGTVYVGSDG 206 (370)
T ss_pred EEec-CCCeEEEEEcc-CCcEEEEEecCCc-cccccccC----ce---eecceEEEecCC
No 247
>KOG4258|consensus
Probab=25.26 E-value=62 Score=35.28 Aligned_cols=56 Identities=25% Similarity=0.539 Sum_probs=32.3
Q ss_pred eE--eCCCCCeecCCCCceecCcceecCCcccCceeecc-CCccc--cCCCCeeeeCCCCce
Q psy17325 52 LC--TCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTK-GSYIC--SCNEGYVLEYDNHTC 108 (461)
Q Consensus 52 ~C--~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~-g~~~C--~C~~g~~l~~~~~~C 108 (461)
.| .|++++.+.. ...|....+|...+.++..-.... ..-+| .||.||+......-|
T Consensus 263 ~CV~~Cp~~~Y~~e-~~RCvt~~~C~~l~~~~~~~i~G~~~~~~Cv~~CPsGy~~N~~~~~C 323 (1025)
T KOG4258|consen 263 VCVEACPPDYYLFE-NWRCVTREECALLHSLSNSVISGVIHAGQCVAKCPSGYKRNSSSSEC 323 (1025)
T ss_pred ceeccCCcchhhhc-cceeccHHHHHHhcCcccccccceeccccchhhCCCcceecCcccce
Confidence 46 5999987644 348988888874443332111110 01245 589999877654444
No 248
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=25.21 E-value=1.5e+02 Score=19.08 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=18.2
Q ss_pred eEEEeeeCCEEEEEeCCCceeec
Q psy17325 426 ALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 426 ~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
..++.+.++++|+++...+...+
T Consensus 4 a~~v~v~g~yaYva~~~~Gl~Iv 26 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNGLVIV 26 (42)
T ss_pred EEEEEEECCEEEEEeCCCCEEEE
Confidence 35788999999999988875543
No 249
>KOG2919|consensus
Probab=25.17 E-value=6.4e+02 Score=24.52 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=52.8
Q ss_pred CCeEEEEeCCCCeEEEEe-CCCCcEEEEec----CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc-----
Q psy17325 160 GGHIYWLDSRLNRIEVCD-ENGTNRIVLAK----DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR----- 229 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~-~~G~~~~~l~~----~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~----- 229 (461)
.-+++.+.+..+-|...+ .+|+.+...-. ..+.....|++.|..- +||-- .+..|...++.-..|
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe--qlfaG---ykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE--QLFAG---YKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC--eEeec---ccceEEEeeccCCCCCCcch
Confidence 346666677777888888 56766543321 2334577889988866 88863 455677766642222
Q ss_pred EEEEecc---cccceeEEeeccCCeeEEecC
Q psy17325 230 STIISTK---IYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 230 ~~i~~~~---~~~P~glavD~~~~~ly~~d~ 257 (461)
.++.... ..-..-+|+.|..-.++-.-.
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gs 227 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGS 227 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeec
Confidence 2222211 122445677776655554433
No 250
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.46 E-value=4.2e+02 Score=26.53 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=42.5
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeC----------CCC---CceeEEEecCCCe
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIST----------KIY---WPNGLTLDIATRR 381 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~----------~l~---~p~glaiD~~~~~ 381 (461)
+.++++.+....++++... |..-...+-|.+.+.+|+..+++... ++. .-.|||+.+..++
T Consensus 140 ~~~ralt~~d~~~~s~~~~------~igdefgP~l~~f~~~Gk~~~~~~~~~~~~~~~~p~g~~~n~gfEglait~d~~~ 213 (391)
T COG4222 140 PEGRALTPADFDVESSQGA------WIGDEFGPYLLEFDANGKLVRVLEVPVRFLPPDNPKGLRNNLGFEGLAITPDGKK 213 (391)
T ss_pred chhhcccCCCcceeecccc------ccccccCcceEEECCCCccccccccccccCcCCCccccccccceeeEEecCCCce
Confidence 6667777655555554332 44444568899999999987776411 111 2357999988899
Q ss_pred EEEE
Q psy17325 382 VYFA 385 (461)
Q Consensus 382 ly~~ 385 (461)
||=+
T Consensus 214 L~~~ 217 (391)
T COG4222 214 LYAL 217 (391)
T ss_pred EEEE
Confidence 9865
No 251
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=24.20 E-value=2e+02 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=20.1
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
.-.|+|+|+.+|.+.-+..+..+-...-+
T Consensus 41 ~~~Gla~Dpetge~i~~~g~~~r~~~~~~ 69 (119)
T PF14251_consen 41 DDKGLAVDPETGEVIPCRGKVKRTPSIVF 69 (119)
T ss_pred CcccceeCCCCCCEEEEecCCCCceeEEE
Confidence 34589999999998888765544444444
No 252
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.35 E-value=6.8e+02 Score=24.14 Aligned_cols=179 Identities=17% Similarity=0.156 Sum_probs=96.1
Q ss_pred EEcCCCCceEEEEeec---CCCCcEEEEecC-CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 198 MLDPSPGTRWLFWTDW---GENPRIERIGMD-GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 198 a~d~~~g~~~ly~td~---~~~~~I~~~~~d-G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
++.+... +||.|+- .....|-..+.. +-.+.--..+.-..|.-|.+.+.++.|.+++..-.+- .-..|+.+
T Consensus 57 ~fs~dG~--~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Th---pd~GR~kL 131 (305)
T PF07433_consen 57 VFSPDGR--LLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETH---PDSGRAKL 131 (305)
T ss_pred EEcCCCC--EEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccC---cccCceec
Confidence 4555555 8998862 123677777777 3223222333334699999999888999998754220 00013333
Q ss_pred ccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe----CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCC-CC
Q psy17325 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS----GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGE-NP 347 (461)
Q Consensus 274 ~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~----~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~-~~ 347 (461)
|++.+--+|=..| ..+|+..+...- ..+ .+-||++.. |.+.+.... =-+.+. .+
T Consensus 132 Nl~tM~psL~~ld-------------~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~~a~Q~------qg~~~~~~P 191 (305)
T PF07433_consen 132 NLDTMQPSLVYLD-------------ARSGALLEQVELPPDLHQLSIRHLAVDGD-GTVAFAMQY------QGDPGDAPP 191 (305)
T ss_pred ChhhcCCceEEEe-------------cCCCceeeeeecCccccccceeeEEecCC-CcEEEEEec------CCCCCccCC
Confidence 3333322222222 334443332111 112 778888864 556554322 112121 23
Q ss_pred ceEEEeecCCCeEEEe-e-----CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 348 RIERIGMDGSNRSTII-S-----TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 348 ~I~~~~~dG~~~~~l~-~-----~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
-+.....++. .+.+- . .--++--.||++...+.+.++-+..+.+...+.. +|..
T Consensus 192 Lva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~-tg~~ 251 (305)
T PF07433_consen 192 LVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA-TGRL 251 (305)
T ss_pred eEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC-CCCE
Confidence 3444444433 22221 1 1124567899997778899999999999999873 5664
No 253
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=23.34 E-value=2.5e+02 Score=22.75 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=26.4
Q ss_pred eeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee
Q psy17325 154 LAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD 212 (461)
Q Consensus 154 iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td 212 (461)
|++|+.+-.|...|...+.|..-.. .+.-+-.|+|+||.+| .+.-+.
T Consensus 12 i~LDp~GYfiI~~d~~~~~i~a~h~----------~n~I~~~Gla~Dpetg--e~i~~~ 58 (119)
T PF14251_consen 12 IDLDPAGYFIIYVDREAGEICAEHY----------TNDIDDKGLAVDPETG--EVIPCR 58 (119)
T ss_pred cccCCCccEEEEEeCCCCeeeHhhc----------cCccCcccceeCCCCC--CEEEEe
Confidence 5566555455545554443322111 1223456999999999 777665
No 254
>PF08091 Toxin_21: Spider insecticidal peptide; InterPro: IPR012626 This family consists of insecticidal peptides isolated from venom of spiders of Aptostichus schlingeri (Trap-door spider) and Calisoga sp. Nine insecticidal peptides were isolated from the venom of the A. schlinger spider and seven of these toxins cause flaccid paralysis to insect larvae within 10 min of injection. However, all nine peptides were lethal within 24 hours [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=23.02 E-value=64 Score=20.01 Aligned_cols=18 Identities=28% Similarity=0.781 Sum_probs=14.0
Q ss_pred cCCCCCCCCCCCCCCCCC
Q psy17325 5 CVNLTKVCDGKTDCPNGA 22 (461)
Q Consensus 5 Ci~~~~~Cd~~~dC~dg~ 22 (461)
|++..+.|-+..||-+|.
T Consensus 1 C~s~~~PC~ns~dCC~g~ 18 (39)
T PF08091_consen 1 CISKRYPCSNSKDCCSGN 18 (39)
T ss_pred CccccccCCCchhhccCC
Confidence 788888898888886543
No 255
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=22.46 E-value=6.3e+02 Score=23.48 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=53.9
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEE-E-EecC-CC----------CCceeEEEcCCCCceEEEEe--ecCCCCcEEEEec
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRI-V-LAKD-NI----------TQPRGMMLDPSPGTRWLFWT--DWGENPRIERIGM 224 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~-~-l~~~-~~----------~~p~~ia~d~~~g~~~ly~t--d~~~~~~I~~~~~ 224 (461)
++.+|+--.+...|.+.++...... . .+.. .. ..--.+|+|. +| |++. ....+..|..+.+
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE-~G---LWvIYat~~~~g~ivvskl 153 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDE-NG---LWVIYATEDNNGNIVVSKL 153 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcC-CC---EEEEEecCCCCCcEEEEee
Confidence 7899999999999999999877654 2 2221 11 1224788884 45 4433 2133356877777
Q ss_pred CCCCcEE--EEecccccce-eEEeeccCCeeEEecCCC
Q psy17325 225 DGSNRST--IISTKIYWPN-GLTLDIATRRVYFADSKL 259 (461)
Q Consensus 225 dG~~~~~--i~~~~~~~P~-glavD~~~~~ly~~d~~~ 259 (461)
|-....+ .....+..+. |=|+= .=+.||.++...
T Consensus 154 d~~tL~v~~tw~T~~~k~~~~naFm-vCGvLY~~~s~~ 190 (250)
T PF02191_consen 154 DPETLSVEQTWNTSYPKRSAGNAFM-VCGVLYATDSYD 190 (250)
T ss_pred CcccCceEEEEEeccCchhhcceee-EeeEEEEEEECC
Confidence 7543322 2222222221 22332 247788887765
No 256
>KOG0308|consensus
Probab=20.66 E-value=1.1e+03 Score=25.39 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=34.9
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDF 394 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~ 394 (461)
..++..+|.=..+|..+ ..+.|+|.+|......+++-+.-.....|.+...+..+ |+-.....|.+
T Consensus 258 VWaL~~~~sf~~vYsG~-------------rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~r 323 (735)
T KOG0308|consen 258 VWALQSSPSFTHVYSGG-------------RDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKR 323 (735)
T ss_pred eEEEeeCCCcceEEecC-------------CCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeecccccee
Confidence 55566666555666433 24678888876644444432333333345554334444 44444445555
Q ss_pred EEe
Q psy17325 395 CNY 397 (461)
Q Consensus 395 ~~~ 397 (461)
-..
T Consensus 324 W~~ 326 (735)
T KOG0308|consen 324 WKL 326 (735)
T ss_pred cCC
Confidence 433
Done!