RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17325
(461 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 236 bits (602), Expect = 6e-70
Identities = 100/415 (24%), Positives = 168/415 (40%), Gaps = 93/415 (22%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPG-CDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
C+ L KVC+ DC + +DE C EC G CS+ C+ +G C CP G L
Sbjct: 285 ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 344
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN---------- 112
C+D++EC+ P CSQ+C N +G Y C C EG+ L+ CKA+
Sbjct: 345 AQR-RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 403
Query: 113 -------------------------------HSAAFLIISNRHSILVADLEEKGKDHRAQ 141
+ + ++ I L+
Sbjct: 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 463
Query: 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
++ + +GLA DWI +IYW DS L + V D G R L ++N ++PR +++DP
Sbjct: 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 523
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261
G +++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y+ DSKL
Sbjct: 524 VHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581
Query: 262 IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG--QLYEALA 319
I +++G N ++ +L +
Sbjct: 582 ISS----------------------------------IDVNGGNRKTILEDEKRLAHPFS 607
Query: 320 LDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT 374
L + ++ WTD N I + +++ + P +
Sbjct: 608 LAVFEDKVF-----------WTDI-INEAIFSANRLTGSDVNLLAENLLSPEDMV 650
Score = 167 bits (424), Expect = 3e-45
Identities = 89/451 (19%), Positives = 155/451 (34%), Gaps = 107/451 (23%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNT--------------CHPTPL 49
C++ + CDG DC + +DE C +A C+ CS+ C
Sbjct: 205 ECIHSSWRCDGGPDCKDKSDEE-NCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSD 263
Query: 50 GALCT------------CPPGEILSNDSV----------------TCQDMNECEQPGYCS 81
C C GE ++ D V C + G CS
Sbjct: 264 EVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 323
Query: 82 QMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQ 141
+C + K Y C C +G+ L C+ I+ S L +
Sbjct: 324 HVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCSQ--------LCVNLEGGYKC 374
Query: 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
A +G Y + + + + + L + + LD
Sbjct: 375 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN---LRNVVALDT 431
Query: 202 SPGTRWLFWTDWGENPRIERIGMDG----SNRSTIISTKIYWPNGLTLDIATRRVYFADS 257
+ ++W+D I +D S+ T+IS I P+GL +D +Y+ DS
Sbjct: 432 EVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 490
Query: 258 KLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE- 316
L + A+ G L +
Sbjct: 491 VLG----------------------------------TVSVADTKGVKRKTLFRENGSKP 516
Query: 317 -ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTL 375
A+ +D +G +++WTDWG +I++ G++G + ++++ I WPNG+TL
Sbjct: 517 RAIVVDPVHG-----------FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL 565
Query: 376 DIATRRVYFADSKLDFIDFCNYDGTGRQQVI 406
D+ + R+Y+ DSKL I + +G R+ ++
Sbjct: 566 DLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 596
Score = 50.2 bits (119), Expect = 1e-06
Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 14/119 (11%)
Query: 3 DRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN-TCHPTPL--GALCTCPPGE 59
+RC+ CDG+ DC NG+DE GC C C + C + C G
Sbjct: 77 NRCIPQFWRCDGQVDCDNGSDE-QGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGS 135
Query: 60 ILSN--------DSVTCQDMNECEQPGYCSQM--CTNTKGSYICSCNEGYVLEYDNHTC 108
++ S C Q C C + + C YV + D+ C
Sbjct: 136 DEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 194
Score = 44.1 bits (103), Expect = 9e-05
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 21/119 (17%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNT--------------CHPTPL 49
+C++ VCD DC +G+DE C + C C+++ C
Sbjct: 117 KCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSD 175
Query: 50 GALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
C + DS C G C S+ C + D C
Sbjct: 176 EWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIH------SSWRCDGGPDCKDKSDEENC 228
Score = 41.7 bits (97), Expect = 5e-04
Identities = 26/110 (23%), Positives = 35/110 (31%), Gaps = 14/110 (12%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGP-GCDLAECKHKFGLCSNT---CHPTPL---------- 49
+C++ VCDG +C +G+DE C CK C C P
Sbjct: 35 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDN 94
Query: 50 GALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGY 99
G+ P + S D C D + C GS SC
Sbjct: 95 GSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT 144
Score = 38.3 bits (88), Expect = 0.005
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 14/109 (12%)
Query: 72 NECEQP----GYCSQMC------TNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIIS 121
N CE+ G C +C + C+C +G +L D +C + +
Sbjct: 662 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEA---EAAVAT 718
Query: 122 NRHSILVADLEEKG-KDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSR 169
S + + + V + G I + +
Sbjct: 719 QETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGATPGLTTVEIVTMSHQ 767
Score = 34.0 bits (77), Expect = 0.11
Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 31 AECKHKFGLCSNTCHPTPL------GALCTCPPGEILSNDSVTCQDMNEC 74
G C C P P C CP G +L+ D +C E
Sbjct: 665 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 714
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 229 bits (584), Expect = 5e-68
Identities = 99/415 (23%), Positives = 167/415 (40%), Gaps = 93/415 (22%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPG-CDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
C+ L KVC+ DC + +DE C EC G CS+ C+ +G C CP G L
Sbjct: 267 ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 326
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI----------- 111
C+D++EC+ P CSQ+C N +G Y C C EG+ L+ CKA+
Sbjct: 327 AQR-RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 385
Query: 112 ------------------------------NHSAAFLIISNRHSILVADLEEKGKDHRAQ 141
+ + ++ I L+
Sbjct: 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 445
Query: 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
++ + +GLA DWI +IYW DS L + V D G R L ++ ++PR +++DP
Sbjct: 446 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDP 505
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261
G +++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y+ DSKL
Sbjct: 506 VHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563
Query: 262 IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG--QLYEALA 319
I +++G N ++ +L +
Sbjct: 564 ISS----------------------------------IDVNGGNRKTILEDEKRLAHPFS 589
Query: 320 LDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT 374
L + ++ WTD N I + +++ + P +
Sbjct: 590 LAVFEDKVF-----------WTDI-INEAIFSANRLTGSDVNLLAENLLSPEDMV 632
Score = 165 bits (418), Expect = 9e-45
Identities = 88/451 (19%), Positives = 162/451 (35%), Gaps = 107/451 (23%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN--------------------- 42
C++ + CDG DC + +DE C +A C+ CS+
Sbjct: 187 ECIHSSWRCDGGPDCKDKSDEEN-CAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSD 245
Query: 43 --TCHPTPLGA---LCTCPPGEILSNDSV----------------TCQDMNECEQPGYCS 81
C L C GE ++ D V C + G CS
Sbjct: 246 EVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 305
Query: 82 QMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQ 141
+C + K Y C C +G+ L C+ I+ + E G + +
Sbjct: 306 HVCNDLKIGYECLCPDGFQLV-AQRRCEDIDECQ-----DPDTCSQLCVNLEGGYKCQCE 359
Query: 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
+ A ++++ + R D + ++ N+ + LD
Sbjct: 360 EGFQLDPHTKACKAVG-SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV-----VALDT 413
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRST----IISTKIYWPNGLTLDIATRRVYFADS 257
+ ++W+D + I +D ++ + +IS I P+GL +D +Y+ DS
Sbjct: 414 EVASNRIYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 472
Query: 258 KLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE- 316
L + A+ G L Q +
Sbjct: 473 VLG----------------------------------TVSVADTKGVKRKTLFREQGSKP 498
Query: 317 -ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTL 375
A+ +D +G +++WTDWG +I++ G++G + ++++ I WPNG+TL
Sbjct: 499 RAIVVDPVHG-----------FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL 547
Query: 376 DIATRRVYFADSKLDFIDFCNYDGTGRQQVI 406
D+ + R+Y+ DSKL I + +G R+ ++
Sbjct: 548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 578
Score = 46.3 bits (109), Expect = 2e-05
Identities = 28/118 (23%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN-TCHPTPLG--ALCTCPPGEI 60
RC+ CDG+ DC NG+DE GC C C + C + C G
Sbjct: 60 RCIPQFWRCDGQVDCDNGSDE-QGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSD 118
Query: 61 -LSNDSVTCQDMNECEQPGYCSQM---------CTNTKGSYICSCNEGYVLEYDNHTC 108
S +TC + C C + + C YV + D+ C
Sbjct: 119 EASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 176
Score = 42.9 bits (100), Expect = 2e-04
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 3 DRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
C+ CD DC +G+DE P + F S+ C C GE +
Sbjct: 137 STCIPQLWACDNDPDCEDGSDEWP--QRCRGLYVFQGDSSPCSAFE----FHCLSGECIH 190
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEG 98
+ C +C+ T C++G
Sbjct: 191 SSWR-CDGGPDCKDKSDEENCAVATCRPDEFQCSDG 225
Score = 37.1 bits (85), Expect = 0.014
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGP-GCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
+C++ VCDG +C +G+DE C CK C C P
Sbjct: 17 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRV--------NRCIPQFWRC 68
Query: 63 NDSVTCQDM---NECEQPGYCSQMCTNTKGSYICS 94
+ V C + C G I
Sbjct: 69 DGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISR 103
Score = 35.6 bits (81), Expect = 0.035
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 72 NECEQP----GYCSQMC------TNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115
N CE+ G C +C + C+C +G +L D +C +A
Sbjct: 644 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAA 697
Score = 34.8 bits (79), Expect = 0.057
Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 31 AECKHKFGLCSNTCHPTPL------GALCTCPPGEILSNDSVTCQDMNEC 74
G C C P P C CP G +L+ D +C E
Sbjct: 647 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 696
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 216 bits (550), Expect = 4e-66
Identities = 106/396 (26%), Positives = 153/396 (38%), Gaps = 99/396 (25%)
Query: 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTK 88
C G C+ C CTC G L+ D TCQD+NEC + GYCSQ CTN++
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE 61
Query: 89 GSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGL 148
G++ C C GY L D +CKA+ L +
Sbjct: 62 GAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI----------------------- 98
Query: 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWL 208
+ + + + LD +
Sbjct: 99 -------------RQVLPHRSEYTLLLNN---------------LENAIALDFHHRRELV 130
Query: 209 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLE 268
FW+D RI R ++GSN ++ST + P GL +D ++Y+ DS
Sbjct: 131 FWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS-------- 181
Query: 269 IKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGM 326
+I AN+DG++ +L+ L + A+AL G
Sbjct: 182 --------------------------RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG- 214
Query: 327 LYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386
++WTDWG PRIE MDGS R I T ++WPNGLT+D A RR+Y+ D
Sbjct: 215 ----------TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264
Query: 387 SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDN 422
+K I+ N DG+ R+ VI L F + D+
Sbjct: 265 AKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDS 300
Score = 202 bits (515), Expect = 6e-61
Identities = 93/358 (25%), Positives = 140/358 (39%), Gaps = 56/358 (15%)
Query: 17 DCPNG---ADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNE 73
C G ++G C + G CS C + C C G L D +C+ +
Sbjct: 27 TCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP 86
Query: 74 CEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA-INHSAAFLIISNRHSILVADLE 132
+ +++ + + F IL A+L
Sbjct: 87 EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 146
Query: 133 EKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT 192
+++V +GL+ GLA DW+ +YW DS +RIEV + +G +R VL ++
Sbjct: 147 GSNV----EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE 202
Query: 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 252
+PR + L P G ++WTDWG PRIE MDGS R I T ++WPNGLT+D A RR+
Sbjct: 203 KPRAIALHPMEG--TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRM 260
Query: 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312
Y+ D+K I+ AN+DGS+ ++S
Sbjct: 261 YWVDAKHHVIER----------------------------------ANLDGSHRKAVISQ 286
Query: 313 QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370
L A+ + LY WTDW I II K+++P
Sbjct: 287 GLPHPFAITVFEDSLY-----------WTDW-HTKSINSANKFTGKNQEIIRNKLHFP 332
Score = 65.9 bits (160), Expect = 7e-12
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 334 CTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 393
+FW+D RI R ++GSN ++ST + P GL +D ++Y+ DS I+
Sbjct: 126 RRELVFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 184
Query: 394 FCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYS 439
N DG R+ ++ L A+AL G +Y++
Sbjct: 185 VANLDGAHRKVLLWQSL-----------EKPRAIALHPMEGTIYWT 219
Score = 42.8 bits (100), Expect = 2e-04
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 60 ILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
L + G C+ +C + +Y C+C G+ ++H C
Sbjct: 337 TLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHAC 384
Score = 35.9 bits (82), Expect = 0.026
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
C G C++ C P+ C CP G +S C
Sbjct: 350 CGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHAC 384
Score = 30.5 bits (68), Expect = 1.2
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 6/96 (6%)
Query: 121 SNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180
+ H I A+L+ G +A ++ GL + +YW D I ++
Sbjct: 265 AKHHVIERANLD--GSHRKA--VISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFT 318
Query: 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGEN 216
+ ++ + P + N
Sbjct: 319 GKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNN 354
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 210 bits (535), Expect = 1e-63
Identities = 75/373 (20%), Positives = 138/373 (36%), Gaps = 55/373 (14%)
Query: 18 CPNG---ADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74
CP+G + D+ EC+ CS C G C C G L + C+ +
Sbjct: 25 CPDGFQLVAQRRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 83
Query: 75 EQPGY-CSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEE 133
+ + L + + + ++ I L+
Sbjct: 84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143
Query: 134 KGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQ 193
++ + +GLA DWI +IYW DS L + V D G R L ++N ++
Sbjct: 144 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 203
Query: 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY 253
PR +++DP G +++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y
Sbjct: 204 PRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 261
Query: 254 FADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG- 312
+ DSKL I +++G N ++
Sbjct: 262 WVDSKLHSISS----------------------------------IDVNGGNRKTILEDE 287
Query: 313 -QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPN 371
+L +L + ++ WTD N I + +++ + P
Sbjct: 288 KRLAHPFSLAVFEDKVF-----------WTDI-INEAIFSANRLTGSDVNLLAENLLSPE 335
Query: 372 GLTLDIATRRVYF 384
+ L +
Sbjct: 336 DMVLFHNLTQPRG 348
Score = 208 bits (531), Expect = 4e-63
Identities = 90/410 (21%), Positives = 153/410 (37%), Gaps = 107/410 (26%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC G CS+ C+ +G C CP G L C+D++EC+ P CSQ+C N +G Y
Sbjct: 2 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 92 ICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLV 151
C C EG+ L+ CKA S A+L +NRH + L+ ++
Sbjct: 61 KCQCEEGFQLDPHTKACKA-VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV----- 114
Query: 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT 211
L + IYW D I + +
Sbjct: 115 VALDTEVASNRIYWSDLSQRMICSTQLDRAH----------------------------- 145
Query: 212 DWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKT 271
S+ T+IS I P+GL +D +Y+ DS L
Sbjct: 146 -------------GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG----------- 181
Query: 272 NVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYY 329
+ A+ G L + A+ +D +G
Sbjct: 182 -----------------------TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG---- 214
Query: 330 STLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL 389
+++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y+ DSKL
Sbjct: 215 -------FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267
Query: 390 DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYS 439
I + +G R+ ++ + + +L + ++++
Sbjct: 268 HSISSIDVNGGNRKTILEDEKRL-----------AHPFSLAVFEDKVFWT 306
Score = 41.0 bits (95), Expect = 6e-04
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 56 PPGEILSNDSVTCQDMNECEQP----GYCSQMC------TNTKGSYICSCNEGYVLEYDN 105
P +L ++ + +N CE+ G C +C + C+C +G +L D
Sbjct: 334 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 393
Query: 106 HTC 108
+C
Sbjct: 394 RSC 396
Score = 33.3 bits (75), Expect = 0.14
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 32 ECKHKFGLCSNTCHPTPL------GALCTCPPGEILSNDSVTC 68
G C C P P C CP G +L+ D +C
Sbjct: 354 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 195 bits (496), Expect = 1e-58
Identities = 101/337 (29%), Positives = 143/337 (42%), Gaps = 87/337 (25%)
Query: 72 NECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADL 131
NEC + GYCSQ CTN++G++ C C GY L D +CKA+ L+ +NR I
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEP-VLLFANRIDIRQVLP 60
Query: 132 EEKGK---------------DHRA-----------------------QDIVVSGLDLVEG 153
HR +++V +GL+ G
Sbjct: 61 HRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG 120
Query: 154 LAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW 213
LA DW+ +YW DS +RIEV + +G +R VL ++ +PR + L P G ++WTDW
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--TIYWTDW 178
Query: 214 GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273
G PRIE MDGS R I T ++WPNGLT+D A RR+Y+ D+K I+
Sbjct: 179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER--------- 229
Query: 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLK 333
AN+DGS+ ++S L A+ + LY
Sbjct: 230 -------------------------ANLDGSHRKAVISQGLPHPFAITVFEDSLY----- 259
Query: 334 CTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370
WTDW I II K+++P
Sbjct: 260 ------WTDWHTK-SINSANKFTGKNQEIIRNKLHFP 289
Score = 67.2 bits (163), Expect = 2e-12
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 335 TRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDF 394
+FW+D RI R ++GSN ++ST + P GL +D ++Y+ DS I+
Sbjct: 84 RELVFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV 142
Query: 395 CNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
N DG R+ ++ L A+AL G +Y++ G
Sbjct: 143 ANLDGAHRKVLLWQSL-----------EKPRAIALHPMEGTIYWTDWG 179
Score = 41.8 bits (97), Expect = 3e-04
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 73 ECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
+ G C+ +C + +Y C+C G+ ++H C
Sbjct: 307 CGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHAC 341
Score = 34.8 bits (79), Expect = 0.049
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70
C G C++ C P+ C CP G N +
Sbjct: 307 CGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACALE 344
Score = 29.5 bits (65), Expect = 2.2
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 121 SNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCD-EN 179
+ H I A+L+ G +A ++ GL + +YW D I +
Sbjct: 222 AKHHVIERANLD--GSHRKA--VISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFT 275
Query: 180 GTNRIVLAKDNITQPRGMMLDP 201
G N+ ++ L P
Sbjct: 276 GKNQEIIRNKLHFPMDIHTLHP 297
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 186 bits (473), Expect = 5e-56
Identities = 66/256 (25%), Positives = 97/256 (37%), Gaps = 55/256 (21%)
Query: 121 SNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180
+ SI A L I+ L EG+A D +G I+W DS+L+RIEV +G
Sbjct: 55 ISEPSIGRASLHGGEP----TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110
Query: 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYW 239
T R VL + PRG++ DP G L+WTDW +NP+IE MDG+NR + +
Sbjct: 111 TQRRVLFDTGLVNPRGIVTDPVRG--NLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL 168
Query: 240 PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299
PNGLT D + ++ + D+ +
Sbjct: 169 PNGLTFDAFSSQLCWVDAGTH----------------------------------RAECL 194
Query: 300 NMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-GSN 358
N ++ G L A+ LY +TDW N + + +
Sbjct: 195 NPAQPGRRKVLEG-LQYPFAVTSYGKNLY-----------YTDWKTN-SVIAMDLAISKE 241
Query: 359 RSTIISTKIYWPNGLT 374
T K G+T
Sbjct: 242 MDTFHPHKQTRLYGIT 257
Score = 171 bits (435), Expect = 2e-50
Identities = 62/296 (20%), Positives = 102/296 (34%), Gaps = 53/296 (17%)
Query: 115 AAFLIISNRHSILVADLEEK-GKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRI 173
L+ + I LE K A+ + ++ GLA+D + +YW D I
Sbjct: 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60
Query: 174 EVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTII 233
+G + + ++ P G+ LD R +FWTD + RIE MDG+ R +
Sbjct: 61 GRASLHGGEPTTIIRQDLGSPEGIALDHL--GRTIFWTDSQLD-RIEVAKMDGTQRRVLF 117
Query: 234 STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVP 293
T + P G+ D LYW D +
Sbjct: 118 DTGLVNPRGIVTDPVR------------------------------GNLYWTDWNRDNP- 146
Query: 294 LKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIER 351
KI ++MDG+N IL L L D + L W D G + R E
Sbjct: 147 -KIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC-----------WVDAGTH-RAEC 193
Query: 352 IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407
+ R ++ + +P +T + +Y+ D K + + + +
Sbjct: 194 LNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246
Score = 86.8 bits (215), Expect = 2e-19
Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 30/160 (18%)
Query: 295 KIGKANMDGSNASILVSGQLYE-------ALALDLENGMLYYSTLKCTRWLFWTDWGENP 347
KI + ++ + + LA D + ++Y WTD P
Sbjct: 11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVY-----------WTDIS-EP 58
Query: 348 RIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407
I R + G +TII + P G+ LD R +++ DS+LD I+ DGT R+ +
Sbjct: 59 SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD 118
Query: 408 IDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447
L + D G LY++ + K
Sbjct: 119 TGL-----------VNPRGIVTDPVRGNLYWTDWNRDNPK 147
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 179 bits (455), Expect = 3e-50
Identities = 102/430 (23%), Positives = 165/430 (38%), Gaps = 111/430 (25%)
Query: 106 HTCKAINHSAAFLIISNRHSILVADLEEKGKD---------------------------- 137
H +H A L+ +NR + + D ++
Sbjct: 1 HHHHH-HHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV 59
Query: 138 -------------HRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI 184
Q++VVSGL +GLA DW+G +YW DS NRIEV + +G+ R
Sbjct: 60 SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119
Query: 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT 244
VL + QPR + LDPS + +++WTDWGE P+IER GMDGS+R II+++IYWPNGLT
Sbjct: 120 VLFWQELDQPRAIALDPS--SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT 177
Query: 245 LDIATRRVYFADSKLDFIDCKSLE-------IKTNVNYS---TIFR-KLYWIDEGGNGVP 293
LD +++Y+AD+KL+FI +L+ +K ++ + T+F LYW D +
Sbjct: 178 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHS-- 235
Query: 294 LKIGKANMDGSNASILVSGQLYEALALDLENGMLY------------------------- 328
I N + ++ + + +
Sbjct: 236 --ILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKP 293
Query: 329 -YSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII---------------STKIYWPNG 372
Y T + + + R+ + I
Sbjct: 294 FYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIA 353
Query: 373 LTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE 432
+ D +Y+ D ++ I DG+G Q V+ + +A+D
Sbjct: 354 IDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI-----------AHPDGIAVDWV 402
Query: 433 NGMLYYSTEG 442
LY++ G
Sbjct: 403 ARNLYWTDTG 412
Score = 162 bits (410), Expect = 5e-44
Identities = 82/332 (24%), Positives = 137/332 (41%), Gaps = 57/332 (17%)
Query: 38 GLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNE 97
G CS+ C +P+ C + + + ++ + S
Sbjct: 280 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFT 339
Query: 98 GYVLEYDN-HTCKAI----NHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVE 152
VL+ ++ AI + +I + ++ G Q +V + + +
Sbjct: 340 DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS----QFVVTAQIAHPD 395
Query: 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD 212
G+A DW+ ++YW D+ +RIEV NGT R +L +++ +PR ++LDP G +++WTD
Sbjct: 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVG--YMYWTD 453
Query: 213 WGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN 272
WGE P+IER +DGS+R +++T + WPNGL LD ++Y+ D+K D
Sbjct: 454 WGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTD------------ 501
Query: 273 VNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTL 332
KI N DG+ +LV ++ L +Y
Sbjct: 502 ----------------------KIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVY---- 535
Query: 333 KCTRWLFWTDWGENPRIERIGMDGSNRSTIIS 364
WTDW IER+ + R II
Sbjct: 536 -------WTDWQRR-SIERVHKRSAEREVIID 559
Score = 145 bits (366), Expect = 5e-38
Identities = 78/353 (22%), Positives = 133/353 (37%), Gaps = 95/353 (26%)
Query: 72 NECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADL 131
G CS +C + C ++ + + + L+++ R + L
Sbjct: 274 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISL 333
Query: 132 EEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNI 191
+ D + + + + YD + G+IYW D
Sbjct: 334 D--TPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD----------------------- 368
Query: 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRR 251
E I R +DGS +++ +I P+G+ +D R
Sbjct: 369 -----------------------EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARN 405
Query: 252 VYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS 311
+Y+ D+ D +I ++G+ IL+S
Sbjct: 406 LYWTDTGTD----------------------------------RIEVTRLNGTMRKILIS 431
Query: 312 GQLYE--ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 369
L E A+ LD G +++WTDWGE P+IER +DGS+R +++T + W
Sbjct: 432 EDLEEPRAIVLDPMVG-----------YMYWTDWGEIPKIERAALDGSDRVVLVNTSLGW 480
Query: 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDN 422
PNGL LD ++Y+ D+K D I+ N DGTGR+ ++ + F L+GD
Sbjct: 481 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDY 533
Score = 93.7 bits (232), Expect = 1e-20
Identities = 64/343 (18%), Positives = 118/343 (34%), Gaps = 54/343 (15%)
Query: 121 SNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180
+ + I ++L+ G + +A V L L +YW D + I C++
Sbjct: 190 AKLNFIHKSNLD--GTNRQAV--VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYT 243
Query: 181 TNRIVLAKDNITQPRG---------------MMLDPSPGTRWLFWTDWGENPRIE-RIGM 224
+ +I P +D + + + G+
Sbjct: 244 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGV 303
Query: 225 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVN--YSTIFRKL 282
L RR+ I + +I+ + Y + +
Sbjct: 304 KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYI 363
Query: 283 YWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDLENGMLYYSTLKCTRWLFW 340
YW D+ I ++ +DGS + +V+ Q+ + +A+D LY W
Sbjct: 364 YWTDDEVR----AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLY-----------W 408
Query: 341 TDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS-KLDFIDFCNYDG 399
TD G + RIE ++G+ R +IS + P + LD +Y+ D ++ I+ DG
Sbjct: 409 TDTGTD-RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG 467
Query: 400 TGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+ R ++ L NG LALD + G +Y+
Sbjct: 468 SDRVVLV--------NTSLGWPNG---LALDYDEGKIYWGDAK 499
Score = 50.2 bits (119), Expect = 1e-06
Identities = 14/67 (20%), Positives = 21/67 (31%)
Query: 42 NTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVL 101
+ + G +N E+ G CS +C C+C G+ L
Sbjct: 550 RSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFEL 609
Query: 102 EYDNHTC 108
D TC
Sbjct: 610 ISDMKTC 616
Score = 41.3 bits (96), Expect = 5e-04
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 38 GLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
G CS+ C P G C CP G L +D TC
Sbjct: 586 GGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 168 bits (427), Expect = 8e-49
Identities = 93/298 (31%), Positives = 132/298 (44%), Gaps = 89/298 (29%)
Query: 114 SAAFLIISNRHSILVADLEEKGKD------------------------------------ 137
SA L+ +NR + + D ++
Sbjct: 3 SAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62
Query: 138 -----HRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT 192
Q++VVSGL +GLA DW+G +YW DS NRIEV + +G+ R VL +
Sbjct: 63 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 252
QPR + LDPS + +++WTDWGE P+IER GMDGS+R II+++IYWPNGLTLD +++
Sbjct: 123 QPRAIALDPS--SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL 180
Query: 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312
Y+AD+KL+FI +N+DG+N +V G
Sbjct: 181 YWADAKLNFIHK----------------------------------SNLDGTNRQAVVKG 206
Query: 313 QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370
L AL L +LY WTDW + I I + I+ P
Sbjct: 207 SLPHPFALTLFEDILY-----------WTDWSTH-SILACNKYTGEGLREIHSDIFSP 252
Score = 86.3 bits (213), Expect = 7e-19
Identities = 43/241 (17%), Positives = 83/241 (34%), Gaps = 65/241 (26%)
Query: 207 WLFWTDWGENPRIERIGM-DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCK 265
L + + + + + +G +TI+ + + + +Y++D +
Sbjct: 6 LLLYANRRD---LRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE----- 57
Query: 266 SLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA-SILVSGQLY--EALALDL 322
I + + + + +V L + LA D
Sbjct: 58 -----------------------------AIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88
Query: 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382
LY WTD N RIE +DGS R + ++ P + LD ++ +
Sbjct: 89 LGEKLY-----------WTDSETN-RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFM 136
Query: 383 YFAD-SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTE 441
Y+ D ++ I+ DG+ R +I +++ NG L LD E LY++
Sbjct: 137 YWTDWGEVPKIERAGMDGSSRFIII--------NSEIYWPNG---LTLDYEEQKLYWADA 185
Query: 442 G 442
Sbjct: 186 K 186
Score = 44.3 bits (104), Expect = 4e-05
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 56 PPGEILSNDSVTCQDMNECEQPGYCSQMCTNT--KGSYICSCNEGYVLEYDNHTCKAIN 112
S G CS +C + K Y C+C G L + TCK N
Sbjct: 253 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGN 311
Score = 44.3 bits (104), Expect = 5e-05
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 38 GLCSNTCHPTPL--GALCTCPPGEILSNDSVTCQDMNECEQP 77
G CS+ C +P+ C CP G L + TC+D N
Sbjct: 275 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHHH 316
Score = 31.2 bits (70), Expect = 0.72
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 7/98 (7%)
Query: 121 SNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCD-EN 179
+ + I ++L+ G + +A V L L +YW D + I C+
Sbjct: 185 AKLNFIHKSNLD--GTNRQAV--VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYT 238
Query: 180 GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENP 217
G + D +
Sbjct: 239 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGG 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 167 bits (424), Expect = 2e-48
Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 51/252 (20%)
Query: 117 FLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVC 176
+ ++ I L+ ++ + +GLA DWI +IYW DS L + V
Sbjct: 45 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104
Query: 177 DENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTK 236
D G R L ++N ++PR +++DP G +++WTDWG +I++ G++G + ++++
Sbjct: 105 DTKGVKRKTLFRENGSKPRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162
Query: 237 IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI 296
I WPNG+TLD+ + R+Y+ DSKL I
Sbjct: 163 IQWPNGITLDLLSGRLYWVDSKLH----------------------------------SI 188
Query: 297 GKANMDGSNASILVSGQLYEA--LALDLENGMLYYSTLKCTRWLFWTDWGENPRIERI-G 353
+++G N ++ + A +L + ++ WTD I
Sbjct: 189 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF-----------WTDIINE-AIFSANR 236
Query: 354 MDGSNRSTIIST 365
+ GS+ + +
Sbjct: 237 LTGSDVNLLAEN 248
Score = 153 bits (388), Expect = 4e-43
Identities = 60/326 (18%), Positives = 110/326 (33%), Gaps = 105/326 (32%)
Query: 116 AFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEV 175
A+L +NRH + L D ++ L V L + IYW D I
Sbjct: 2 AYLFFTNRHEVRKMTL-----DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICS 56
Query: 176 CDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST 235
+ + S+ T+IS
Sbjct: 57 TQLDRAH------------------------------------------GVSSYDTVISR 74
Query: 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLK 295
I P+GL +D +Y+ DS L
Sbjct: 75 DIQAPDGLAVDWIHSNIYWTDSVLG----------------------------------T 100
Query: 296 IGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG 353
+ A+ G L + A+ +D +G +++WTDWG +I++ G
Sbjct: 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHG-----------FMYWTDWGTPAKIKKGG 149
Query: 354 MDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVE 413
++G + ++++ I WPNG+TLD+ + R+Y+ DSKL I + +G R+ ++ +
Sbjct: 150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE---- 205
Query: 414 FTNDLMGDNGVPALALDLENGMLYYS 439
+L + ++++
Sbjct: 206 -------KRLAHPFSLAVFEDKVFWT 224
Score = 77.8 bits (191), Expect = 5e-16
Identities = 29/153 (18%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 295 KIGKANMDGSNASILVSGQLY-EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG 353
++ K +D S + L+ AL ++ + +Y W+D + I
Sbjct: 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIY-----------WSDLSQR-MICSTQ 58
Query: 354 MDGSNRST----IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILID 409
+D ++ + +IS I P+GL +D +Y+ DS L + + G R+ + +
Sbjct: 59 LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 118
Query: 410 LMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+ A+ +D +G +Y++ G
Sbjct: 119 G-----------SKPRAIVVDPVHGFMYWTDWG 140
Score = 40.8 bits (95), Expect = 5e-04
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 56 PPGEILSNDSVTCQDMNECEQP----GYCSQMCTNT------KGSYICSCNEGYVLEYDN 105
P +L ++ + +N CE+ G C +C + C+C +G +L D
Sbjct: 252 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 311
Query: 106 HTC 108
+C
Sbjct: 312 RSC 314
Score = 34.3 bits (78), Expect = 0.063
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 117 FLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVC 176
+ + S HSI D+ G + + I+ L + ++W D I
Sbjct: 179 YWVDSKLHSISSIDVN--GGNRKT--ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 234
Query: 177 DENGTNRIVLAKDNITQPRGM 197
+ + + L +N+ P M
Sbjct: 235 NRLTGSDVNLLAENLLSPEDM 255
Score = 33.9 bits (77), Expect = 0.086
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 31 AECKHKFGLCSNTCHPTPL------GALCTCPPGEILSNDSVTC 68
G C C P P C CP G +L+ D +C
Sbjct: 271 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 171 bits (435), Expect = 2e-47
Identities = 74/374 (19%), Positives = 131/374 (35%), Gaps = 66/374 (17%)
Query: 12 CDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGAL-CTCPPGEILSNDSVTCQD 70
EC G CS+ C P+G C CP L+ D+ TC
Sbjct: 247 HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 306
Query: 71 MNECE---QPGYCSQMCTNTKGSY-----ICSCNEGYVLEYDNHTCKAINHSAAFLIISN 122
Q ++M + + S I S ++YD + + I S
Sbjct: 307 PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQL------YWIDSR 360
Query: 123 RHSILVADLEEKGKDHRAQDIVVS--GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180
++ I A + V S L+ D +IYW N I V +G
Sbjct: 361 QNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420
Query: 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYW 239
+ V+ K +PR ++++P ++++T+ +P+IER +DG+ R + + +
Sbjct: 421 RSVGVVLKGEQDRPRAVVVNPE--KGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSK 478
Query: 240 PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299
P L LD ++++ADS L +I +
Sbjct: 479 PIALALDSRLGKLFWADSDLR----------------------------------RIESS 504
Query: 300 NMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR 359
++ G+N +L + + + L + LY W D + IE+I M G
Sbjct: 505 DLSGANRIVLEDSNILQPVGLTVFENWLY-----------WIDKQQQ-MIEKIDMTGREG 552
Query: 360 STIISTKIYWPNGL 373
T + +I + +
Sbjct: 553 RTKVQARIAQLSDI 566
Score = 171 bits (434), Expect = 3e-47
Identities = 81/369 (21%), Positives = 153/369 (41%), Gaps = 64/369 (17%)
Query: 122 NRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGT 181
+ +I A + + +V GLD EG+A DW+G ++YW D+ NRIEV +G
Sbjct: 57 SLKTISRAFMNGSAL----EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112
Query: 182 NRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPN 241
+R VL ++ PR + LDP+ +++WT+WG P+I+R MDGS R+T++ + N
Sbjct: 113 HRQVLVWKDLDSPRALALDPA--EGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRAN 169
Query: 242 GLTLDIATRRVYFADSKLDFIDCKSLE------IKTNVNYS---TIFRK-LYWIDEGGNG 291
GLT+D A RR+Y+ D + I+ ++ I ++ + T ++ +YW D
Sbjct: 170 GLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRR- 228
Query: 292 VPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTR--------------- 336
I +AN ++ G L + + + + +C
Sbjct: 229 ---SIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVG 285
Query: 337 ---------------------WLFWTDWGENPRIERIGMDGSNRSTII--STKIYWPNGL 373
+ + + I R+ +D II + +
Sbjct: 286 GFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAI 345
Query: 374 TLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLEN 433
D +++Y+ DS+ + I DG+ V++ + + L++D+ +
Sbjct: 346 DYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSV-----PSQNLEIQPYDLSIDIYS 400
Query: 434 GMLYYSTEG 442
+Y++ E
Sbjct: 401 RYIYWTCEA 409
Score = 151 bits (381), Expect = 5e-40
Identities = 70/381 (18%), Positives = 128/381 (33%), Gaps = 107/381 (28%)
Query: 53 CTCPPGEILSNDSVTCQDMNECEQP-GYCSQMCTNT-KGSYICSCNEGYVLEYDNHTCKA 110
+IL S NEC G+CS +C G ++C C Y L DN TC A
Sbjct: 247 HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 306
Query: 111 INHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRL 170
F S + +I ++ + + + L V + YD + +YW+DSR
Sbjct: 307 PTTFLLF---SQKSAINRMVID--EQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR- 360
Query: 171 NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230
I + DGS
Sbjct: 361 ---------------------------------------------QNMIRKAQEDGSQGF 375
Query: 231 TIISTKI------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYW 284
T++ + + P L++DI +R +Y+ +
Sbjct: 376 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATN------------------------ 411
Query: 285 IDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWLFWTD 342
I +DG + +++ G+ A+ ++ E G +Y +T+
Sbjct: 412 ----------VINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMY-----------FTN 450
Query: 343 WG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTG 401
+P+IER +DG+ R + + + P L LD ++++ADS L I+ + G
Sbjct: 451 LQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510
Query: 402 RQQVILIDLMVEFTNDLMGDN 422
R + +++ + +
Sbjct: 511 RIVLEDSNILQPVGLTVFENW 531
Score = 145 bits (366), Expect = 5e-38
Identities = 78/297 (26%), Positives = 108/297 (36%), Gaps = 55/297 (18%)
Query: 116 AFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEV 175
AFL+ S R I LE ++ I ++G+ L +D IYW D L I
Sbjct: 7 AFLLFSRRADIRRISLE---TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 63
Query: 176 CDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST 235
NG+ + + + P GM +D + L+W D G N RIE +DG +R ++
Sbjct: 64 AFMNGSALEHVVEFGLDYPEGMAVDWL--GKNLYWADTGTN-RIEVSKLDGQHRQVLVWK 120
Query: 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLK 295
+ P L LD A +YW + GG K
Sbjct: 121 DLDSPRALALDPAE------------------------------GFMYWTEWGGKP---K 147
Query: 296 IGKANMDGSNASILVSG-QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM 354
I +A MDGS + LV L +D LY WTD N IE M
Sbjct: 148 IDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLY-----------WTDLDTN-LIESSNM 195
Query: 355 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLM 411
G NR I + P GLT +Y+ D I+ N + +I L
Sbjct: 196 LGLNREVIADD-LPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQNRTIIQGHLD 249
Score = 113 bits (284), Expect = 4e-27
Identities = 62/332 (18%), Positives = 116/332 (34%), Gaps = 51/332 (15%)
Query: 135 GKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQP 194
D + +V + GL D+ +YW D N IE + G NR V+A D++ P
Sbjct: 152 AMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA-DDLPHP 210
Query: 195 RGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 254
G+ +++WTDW IER TII + + + + ++R+ +
Sbjct: 211 FGLTQYQ----DYIYWTDWS-RRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGW 265
Query: 255 ADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL------------KIGKANMD 302
+ C L + V ++ N I + +D
Sbjct: 266 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVID 325
Query: 303 GSNASILV----SGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN 358
+ ++ S + A+ D + LY W D I + DGS
Sbjct: 326 EQQSPDIILPIHSLRNVRAIDYDPLDKQLY-----------WIDS-RQNMIRKAQEDGSQ 373
Query: 359 RSTIISTKI------YWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMV 412
T++ + + P L++DI +R +Y+ + I+ DG V+ +
Sbjct: 374 GFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQ-- 431
Query: 413 EFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444
+ A+ ++ E G +Y++
Sbjct: 432 ---------DRPRAVVVNPEKGYMYFTNLQER 454
Score = 95.3 bits (236), Expect = 4e-21
Identities = 58/352 (16%), Positives = 111/352 (31%), Gaps = 69/352 (19%)
Query: 121 SNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180
+ + I +++ G + ++ L GL +IYW D IE ++
Sbjct: 185 LDTNLIESSNML--GLNRE---VIADDLPHPFGLTQY--QDYIYWTDWSRRSIERANKTS 237
Query: 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 240
+ + ++ +++ + W E + P
Sbjct: 238 GQNRTIIQGHLDYVMDILVF-----HSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCP 292
Query: 241 NGLTLDIATRRVYFADSKLDFIDC--------------------KSLEIKTNVNYSTIFR 280
+L+ R + L F SL ++Y + +
Sbjct: 293 AHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDK 352
Query: 281 KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--------YEALALDLENGMLYYSTL 332
+LYWID N I KA DGS +V + L++D+ + +Y
Sbjct: 353 QLYWIDSRQN----MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIY---- 404
Query: 333 KCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF- 391
WT N I +DG + ++ + P + ++ +YF + +
Sbjct: 405 -------WTCEATN-VINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSP 456
Query: 392 -IDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
I+ DGT R+ + + L LALD G L+++
Sbjct: 457 KIERAALDGTEREVLF--------FSGLSKPIA---LALDSRLGKLFWADSD 497
Score = 52.5 bits (125), Expect = 2e-07
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 337 WLFWTDWGENPRIERIGMDGSNRSTII-STKIYWPNGLTLDIATRRVYFADSKLDFIDFC 395
+L ++ + I RI ++ +N + I T + + L D+ R+Y+ D L I
Sbjct: 8 FLLFSRRAD---IRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRA 64
Query: 396 NYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+G+ + V+ L + +A+D LY++ G
Sbjct: 65 FMNGSALEHVVEFGL-----------DYPEGMAVDWLGKNLYWADTG 100
Score = 39.0 bits (90), Expect = 0.003
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 74 CEQPGYCSQMCTNT-KGSYICSCNEGYVLEYDNHTCKAINH 113
+ G CS +C G+ CSC VL D +C H
Sbjct: 583 AQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKH 623
Score = 35.9 bits (82), Expect = 0.031
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 33 CKHKFGLCSNTCHPTPLG-ALCTCPPGEILSNDSVTCQDMNECEQ 76
C G CS+ C G C+CP +L D ++C
Sbjct: 582 CAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKHHHH 626
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 119 bits (300), Expect = 8e-33
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPG--CDLAECKHKFGLCSNTCHPTPLGALCTCPPGEIL 61
+ D P + EC G CS C+ +G C CP G L
Sbjct: 5 HHHH----PMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQL 60
Query: 62 SNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109
C+D++EC+ P CSQ+C N +G Y C C EG+ L+ CK
Sbjct: 61 VAQR-RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 36.5 bits (85), Expect = 0.003
Identities = 3/31 (9%), Positives = 4/31 (12%), Gaps = 4/31 (12%)
Query: 82 QMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
+ Y E N
Sbjct: 4 HHHHHPMSDYDIPTTEN----LYFQGAMGTN 30
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 95.0 bits (237), Expect = 4e-24
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 32 ECKHKFGLCSN-TCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGS 90
EC K +C C P C CP G + S +C+D++EC + C+Q+C N G
Sbjct: 5 ECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE-NMCAQLCVNYPGG 63
Query: 91 YICSCN--EGYVLEYDNHTCKAIN 112
Y C C+ +G+ L D +C+ ++
Sbjct: 64 YTCYCDGKKGFKLAQDQKSCEVVS 87
Score = 62.7 bits (153), Expect = 1e-12
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 69 QDMNEC-EQPGYC-SQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
+D++EC +P C + +C N G + C C EGY + +C+ I+
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDID 46
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 92.4 bits (230), Expect = 6e-23
Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 5 CVNLTKVCDGKTDCPNGADEGP-GCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
C L C G P + C C P A C CP G IL +
Sbjct: 16 CQPLD-QTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-QASCECPEGYIL-D 72
Query: 64 DSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDN-HTC 108
D C D++ECE G+CS +C N G++ C C L C
Sbjct: 73 DGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 48.5 bits (116), Expect = 2e-07
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 69 QDMNECEQPGYCSQMCTN-TKGSYICSCNEGYVL-EYDNHTCKAIN 112
+ ++ C + C C + SY+C C EG+ ++ H C+
Sbjct: 2 EPVDPCFRAN-CEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFC 46
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 93.6 bits (232), Expect = 2e-21
Identities = 29/264 (10%), Positives = 76/264 (28%), Gaps = 43/264 (16%)
Query: 160 GGHIYWLDSRL-NRIEVCDENGTNRIVLAKDNITQ--PRGMML---DPSPGTRWLFWTDW 213
G +++ ++ R+ + +G+N L+ D + +
Sbjct: 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFS 84
Query: 214 GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF--------IDCK 265
+ + RI +G + + + + +Y+ ID +
Sbjct: 85 YDRNSLCRIKRNGHGSTVLDPDPCIYA-----SLIGNYIYYLHYDTQTATSLYRIRIDGE 139
Query: 266 SLEIKTNVNYSTIF---RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDL 322
+ N T R Y+ + ++ + + + ++ Y+ + LD
Sbjct: 140 EKKKIKNHYLFTCNTSDRYFYYNNPKNG----QLYRYDTASQSEALFYDCNCYKPVVLD- 194
Query: 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382
+++ D + I + ++ N + I N +
Sbjct: 195 ------------DTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIF 238
Query: 383 YFADSKLDFIDFCNYDGTGRQQVI 406
Y + DGTG +++
Sbjct: 239 YQRGGDNPALCVVKNDGTGFKELA 262
Score = 85.5 bits (211), Expect = 1e-18
Identities = 41/326 (12%), Positives = 97/326 (29%), Gaps = 57/326 (17%)
Query: 96 NEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGK----DHRAQDIVVSGLDLV 151
N G E D F ++ + +++ + A I +
Sbjct: 17 NAGLFCESDGEVF--------FSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVY 68
Query: 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT 211
+ + N + NG VL D + S ++++
Sbjct: 69 YVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP-------CIYASLIGNYIYYL 121
Query: 212 DWGENP--RIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI-----DC 264
+ + RI +DG + I + ++ T + + R Y+ + K +
Sbjct: 122 HYDTQTATSLYRIRIDGEEKKKIKNHYLF-----TCNTSDRYFYYNNPKNGQLYRYDTAS 176
Query: 265 KSLEIKTNVNYSTIF----RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALAL 320
+S + + N +Y++D + I N++ N +L +
Sbjct: 177 QSEALFYDCNCYKPVVLDDTNVYYMDVNRDN---AIVHVNINNPNPVVLTEANIEHYNVY 233
Query: 321 DLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR 380
+F+ G+NP + + DG+ + + +++ ++
Sbjct: 234 G--------------SLIFYQRGGDNPALCVVKNDGTGFKELAKGEFCN-----INVTSQ 274
Query: 381 RVYFADSKLDFIDFCNYDGTGRQQVI 406
VYF D + + + +
Sbjct: 275 YVYFTDFVSNKEYCTSTQNPDTIKAL 300
Score = 50.1 bits (119), Expect = 6e-07
Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 58/239 (24%)
Query: 207 WLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKS 266
+F+++ +N R+ + +DGSN + + + ++ VY+ + I ++
Sbjct: 27 EVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMY-----INADKNYVYYVRNNNQKITSQT 81
Query: 267 LEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGM 326
+ + + +G +++L + L
Sbjct: 82 FFSYDRNS---------------------LCRIKRNGHGSTVLDPDP---CIYASLIGNY 117
Query: 327 LYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386
+YY + + RI +DG + I + ++ T + + R Y+ +
Sbjct: 118 IYYLH--------YDTQTAT-SLYRIRIDGEEKKKIKNHYLF-----TCNTSDRYFYYNN 163
Query: 387 SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEF 445
K + + + + L++ +YY +
Sbjct: 164 PKNGQLYRYDTASQSEALFYDCNC---------------YKPVVLDDTNVYYMDVNRDN 207
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 87.8 bits (218), Expect = 1e-20
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 18 CPNG---ADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74
G + C L + + + LC G + +V +D++EC
Sbjct: 66 NEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDEC 125
Query: 75 EQ-PGYCS-QMCTNTKGSYICSCNEGYVLEYDNHTC 108
++ PG C C NT GS+ C C GY L D C
Sbjct: 126 QELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 80.9 bits (200), Expect = 3e-18
Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC S C TP +C CPP L+ V C D Y G
Sbjct: 5 ECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG--NCYLDIRPRGDNGDT 62
Query: 92 ICSCNEGYVLEYDNHTC 108
CS G + + C
Sbjct: 63 ACSNEIGVGVSKASCCC 79
Score = 79.7 bits (197), Expect = 8e-18
Identities = 16/100 (16%), Positives = 24/100 (24%), Gaps = 7/100 (7%)
Query: 17 DCPNG---ADEGPGC-DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMN 72
DCP GC D C+ G +S S C
Sbjct: 27 DCPPDFELNPTRVGCVDTRSGNCY---LDIRPRGDNGDTACSNEIGVGVSKASCCCSLGK 83
Query: 73 ECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
P ++ +C EG+ + I+
Sbjct: 84 AWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDID 123
Score = 58.1 bits (141), Expect = 3e-10
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 70 DMNECEQPGY-CSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
D+NEC P S C NT GSYIC C + L C
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTR 45
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 80.8 bits (200), Expect = 4e-19
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 32 ECKHKFGLCSN-TCHPTPLGALCTCPPG-EILSNDSVTCQDMNECEQ-PGYC-SQMCTNT 87
EC+ LC C TP C C G E C D++EC++ P C +C NT
Sbjct: 5 ECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNT 64
Query: 88 KGSYICSCNEGYVLEYDNHTC 108
+GSY C C G+ L + C
Sbjct: 65 EGSYRCECPPGHQLSPNISAC 85
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 76.1 bits (188), Expect = 2e-17
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQP-GYCSQMCTNT 87
D+ ECK C T C CP G IL C D +EC + C N
Sbjct: 4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGNGTCKNV 61
Query: 88 KGSYICSCNEGYVLEYDNHTCK 109
G + C+C EG+ TC+
Sbjct: 62 IGGFECTCEEGFEP-GPMMTCE 82
Score = 61.1 bits (149), Expect = 3e-12
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 67 TCQDMNECEQPGYC-SQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
+ DM+EC++P C C NT GSY C C GY+L + C +
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTD 45
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 77.8 bits (192), Expect = 2e-17
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 8/108 (7%)
Query: 3 DRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
+ V DG+ + ++C G + T C G
Sbjct: 45 IKGTCWQTVIDGRCEININ----GATLKSQCCSSLG-AAWGSPCTLCQVDPICGKGYSR- 98
Query: 63 NDSVTCQDMNECEQ-PGYCS-QMCTNTKGSYICSCNEGYVLEYDNHTC 108
C+D++ECE PG C +C NT+GS+ C C G L+ C
Sbjct: 99 IKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 57.7 bits (140), Expect = 2e-10
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 70 DMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
D++ECE + +C N+ GS+IC C+ L+ C
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETI 45
Score = 55.0 bits (133), Expect = 2e-09
Identities = 13/97 (13%), Positives = 21/97 (21%), Gaps = 25/97 (25%)
Query: 40 CSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE-QPGYCSQMC-------------- 84
+ C +P +C C L C + + C
Sbjct: 13 INGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCC 72
Query: 85 ---------TNTKGSYICSCNEGYVLEYDNHTCKAIN 112
T C +GY C+ I+
Sbjct: 73 SSLGAAWGSPCTLCQVDPICGKGYSR-IKGTQCEDID 108
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 73.1 bits (180), Expect = 1e-14
Identities = 47/241 (19%), Positives = 91/241 (37%), Gaps = 38/241 (15%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220
G +++ ++ N+I + G + + + P G+ P+ G +++T+ RI
Sbjct: 68 GEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GD--IWFTEMN-GNRIG 123
Query: 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI-----DCKSLEIKTNVNY 275
RI DG R + K +P+ +TL + ++F +++ + I E K
Sbjct: 124 RITDDGKIREYELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPA 182
Query: 276 STIFR-------KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDLENGM 326
S L++++ GN KIG+ G + A+
Sbjct: 183 SGPVGITKGNDDALWFVEIIGN----KIGRITTSGEITEFKIPTPNARPHAITAG-AGID 237
Query: 327 LYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386
L++ T+WG N +I R+ + I K P+G+ D ++FA
Sbjct: 238 LWF-----------TEWGAN-KIGRLTSNNIIEEYPIQIKSAEPHGICFD--GETIWFAM 283
Query: 387 S 387
Sbjct: 284 E 284
Score = 64.7 bits (158), Expect = 9e-12
Identities = 37/285 (12%), Positives = 76/285 (26%), Gaps = 67/285 (23%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220
G ++ + N I + +G + + + G +++T+ +I
Sbjct: 26 GKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSD-GE--VWFTENA-ANKIG 81
Query: 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFR 280
RI G + + P G+T ++F +
Sbjct: 82 RITKKGIIKEYTLPNPDSAPYGITEG-PNGDIWFTEM----------------------- 117
Query: 281 KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWL 338
+IG+ DG + + + L + L++
Sbjct: 118 --------NGN---RIGRITDDGKIREYELPNKGSYPSFITLG-SDNALWF--------- 156
Query: 339 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398
T+ N I RI G I T P G+T ++F +
Sbjct: 157 --TENQNN-AIGRITESGDITEFKIPTPASGPVGITKG-NDDALWFVEI----------- 201
Query: 399 GTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443
+ I + + A+ L+++ GA
Sbjct: 202 IGNKIGRITTSGEITEFKIPTPNARPHAITAG-AGIDLWFTEWGA 245
Score = 28.8 bits (65), Expect = 3.4
Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
+ + + G +++ + N+I N + +P G+ D
Sbjct: 220 IPTPNARPHAITAG-AGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDG 276
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 66.7 bits (163), Expect = 2e-14
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 70 DMNECEQP---------GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110
D++EC C +C N G Y CSC GY L+ D H+C+A
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
Score = 35.9 bits (83), Expect = 0.001
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 29 DLAEC--------KHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69
DL EC + C + CH G C+C PG L D +CQ
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 71.2 bits (175), Expect = 6e-14
Identities = 47/241 (19%), Positives = 91/241 (37%), Gaps = 37/241 (15%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220
G I++ ++ N+I + G + P G+ + G W T RI
Sbjct: 73 GDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWF--TQLN-GDRIG 128
Query: 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI-----DCKSLEIKTNVNY 275
++ DG+ + K +P +TL + ++F +++ + I K E N
Sbjct: 129 KLTADGTIYEYDLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEEYPLPTNA 187
Query: 276 STIFR-------KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDLENGM 326
+ L++++ GN KIG+ G + + A+ +N
Sbjct: 188 AAPVGITSGNDGALWFVEIMGN----KIGRITTTGEISEYDIPTPNARPHAITAG-KNSE 242
Query: 327 LYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386
+++ T+WG N +I RI D + + + T+ P+G+T V+FA
Sbjct: 243 IWF-----------TEWGAN-QIGRITNDNTIQEYQLQTENAEPHGITFG-KDGSVWFAL 289
Query: 387 S 387
Sbjct: 290 K 290
Score = 67.7 bits (166), Expect = 9e-13
Identities = 38/301 (12%), Positives = 92/301 (30%), Gaps = 57/301 (18%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220
G +++ + N+I D++G + + +++ G +++T+ G N +I
Sbjct: 31 GKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSL-GD--IWFTENGAN-KIG 86
Query: 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFR 280
++ G + P G+T ++F D I ++ +
Sbjct: 87 KLSKKGGFTEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRI----GKLTADGTIYEYDL 141
Query: 281 ----------------KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDL 322
L++ + N IG+ G + +
Sbjct: 142 PNKGSYPAFITLGSDNALWFTENQNN----SIGRITNTGKLEEYPLPTNAAAPVGITSG- 196
Query: 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382
+G L++ + N +I RI G I T P+ +T +
Sbjct: 197 NDGALWF-----------VEIMGN-KIGRITTTGEISEYDIPTPNARPHAITAG-KNSEI 243
Query: 383 YFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+F + G + I D ++ + + ++G ++++ +
Sbjct: 244 WFTEW-----------GANQIGRITNDNTIQEYQLQTENAEPHGITFG-KDGSVWFALKC 291
Query: 443 A 443
Sbjct: 292 K 292
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 67.2 bits (164), Expect = 1e-13
Identities = 33/131 (25%), Positives = 43/131 (32%), Gaps = 28/131 (21%)
Query: 5 CVNLTKVCDGKTDCPNG--------ADEGPGC-DLAECKHKFGLC---SNTCHPTPLGAL 52
CVN C C G C D+ EC + + C T
Sbjct: 15 CVN-ATACR----CNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYD 69
Query: 53 CTCPPG--------EILSNDSVTCQDMNECEQ-PGYC--SQMCTNTKGSYICSCNEGYVL 101
C C PG + TCQD++EC C S +C NT GSY C C G+
Sbjct: 70 CVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP 129
Query: 102 EYDNHTCKAIN 112
+ +
Sbjct: 130 RHGIPNNQKDT 140
Score = 39.4 bits (92), Expect = 5e-04
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 23 DEGPGC-DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75
+ C D+ EC C + C T C C PG + Q CE
Sbjct: 88 ESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
Score = 37.1 bits (86), Expect = 0.003
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 70 DMNECEQPGYCSQMCTNTKGSYICSCNEGY-----VLEYDNHTCKAIN 112
D C + C N + C CN G+ ++ TC IN
Sbjct: 1 DSRGCARWCPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCDDIN 45
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 64.7 bits (156), Expect = 2e-12
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 28 CDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS-NDSVTCQDMNECEQ---PGYCSQM 83
C C + G C A C+C G + + D C E +++
Sbjct: 94 CQYXNC-GESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEV 152
Query: 84 CTNTKGSYICSCNEGYVLEYDNHTCKAINH 113
C N +G Y C C EG+ + + + C +H
Sbjct: 153 CXNVEGVYXCQCMEGFTFDXEXNVCLGPHH 182
Score = 51.6 bits (122), Expect = 7e-08
Identities = 20/107 (18%), Positives = 26/107 (24%), Gaps = 3/107 (2%)
Query: 13 DGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMN 72
+ C + C N C C G L D+
Sbjct: 36 LSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ 95
Query: 73 E--CEQPGYCSQMCTNTKGSYICSCNEGYVLE-YDNHTCKAINHSAA 116
C + G C + S CSC G V D C +A
Sbjct: 96 YXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETAC 142
Score = 46.2 bits (108), Expect = 4e-06
Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 12/84 (14%)
Query: 40 CSN-TCHPTPLGALCTCPPGEILSNDSVTCQDMNEC----------EQPGYCSQMCTNTK 88
C N C C G + +++ TC++ NEC E
Sbjct: 13 CXNGQLVQMSNHFXCMCNEGLVHLSEN-TCEEXNECXXETLGXACGEFGQCIENPDPAQV 71
Query: 89 GSYICSCNEGYVLEYDNHTCKAIN 112
Y C C EGY L D
Sbjct: 72 NMYXCGCIEGYTLXEDTCVLDVCQ 95
Score = 43.9 bits (102), Expect = 3e-05
Identities = 8/64 (12%), Positives = 12/64 (18%)
Query: 13 DGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMN 72
G P C+ + C C C G + C +
Sbjct: 122 IGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPH 181
Query: 73 ECEQ 76
Sbjct: 182 HHHH 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 65.3 bits (160), Expect = 4e-12
Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 57/244 (23%)
Query: 146 SGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGT 205
+GL +GLA D G +Y D + + N+ VL D + P G+ +D G
Sbjct: 64 NGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAA-GSNNQTVLPFDGLNYPEGLAVDTQ-GA 120
Query: 206 RWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCK 265
++ D G N R+ ++ ++ + T + P+G+ +D + VY D+
Sbjct: 121 --VYVADRG-NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDT-------- 168
Query: 266 SLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDLE 323
N ++ K + +N +L + +A+D E
Sbjct: 169 -----------------------DNN---RVVKLEAESNNQVVLPFTDITAPWGIAVD-E 201
Query: 324 NGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY 383
G +Y + + N ++ ++ + + + T + P + +D + R VY
Sbjct: 202 AGTVYVT-----------EHNTN-QVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVY 248
Query: 384 FADS 387
AD
Sbjct: 249 VADR 252
Score = 54.2 bits (131), Expect = 2e-08
Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 99 YVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDW 158
YV + N+ + + + + +GL+ +G+A D
Sbjct: 122 YVADRGNNRVVKLAAGSKTQTV----------------------LPFTGLNDPDGVAVD- 158
Query: 159 IGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPR 218
G++Y D+ NR+ + N++VL +IT P G+ +D + GT ++ T+ N +
Sbjct: 159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GT--VYVTEHNTN-Q 214
Query: 219 IERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 257
+ ++ + + + T + P + +D + R VY AD
Sbjct: 215 VVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADR 252
Score = 52.6 bits (127), Expect = 7e-08
Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 47/257 (18%)
Query: 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY 253
P G+ +D + G ++ T G R+ ++ + + + +Y P GL +D VY
Sbjct: 26 PSGVAVDSA-GN--VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVY 81
Query: 254 FADSKLDFIDCKSLEIKTNVNYSTIFR-----------KLYWIDEGGNGVPLKIGKANMD 302
D + + V +Y D G N ++ K
Sbjct: 82 VTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNN----RVVKLAAG 137
Query: 303 GSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRS 360
++L L + +A+D +G +Y TD N R+ ++ + +N+
Sbjct: 138 SKTQTVLPFTGLNDPDGVAVD-NSGNVYV-----------TDTD-NNRVVKLEAESNNQV 184
Query: 361 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMG 420
+ T I P G+ +D VY + T + +L G
Sbjct: 185 VLPFTDITAPWGIAVD-EAGTVYVTEH-----------NTNQVVKLLAGSTTSTVLPFTG 232
Query: 421 DNGVPALALDLENGMLY 437
N A+A+D + +Y
Sbjct: 233 LNTPLAVAVD-SDRTVY 248
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 60.9 bits (148), Expect = 1e-11
Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 43 TCHPTPLGALCTCPPGEILSNDSVTCQDMNECE-QPGYCSQMCTNTKGSYICSCNEGYVL 101
TC C C G C G C+ C G CSC GY L
Sbjct: 27 TCIDGIGSFSCDCRSGWEGRFCQ-REVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKL 85
Query: 102 EYDNHTC 108
D C
Sbjct: 86 GDDLLQC 92
Score = 42.0 bits (99), Expect = 4e-05
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 17 DCPNGADEGPGC----DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMN 72
DC +G EG C C G C++ C C+C PG L +D + C
Sbjct: 38 DCRSGW-EGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 96
Query: 73 E--CEQPGYC 80
+ C +P
Sbjct: 97 KFPCGRPWKR 106
Score = 33.5 bits (77), Expect = 0.028
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 9/42 (21%)
Query: 67 TCQDMNECEQPGYCSQ---------MCTNTKGSYICSCNEGY 99
D ++C C + GS+ C C G+
Sbjct: 2 KHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW 43
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 55.1 bits (133), Expect = 2e-10
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 67 TCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
C N G C Q C + S +CSC GY L + C
Sbjct: 3 LCSLDN-----GDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 43
Score = 45.1 bits (107), Expect = 7e-07
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74
C G C CH +C+C G L+++ C
Sbjct: 3 LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 54.3 bits (131), Expect = 4e-10
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 68 CQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI 111
C N G C Q C + CSC GYVL D+ +C +
Sbjct: 1 CSLDN-----GGCDQFCREERSEVRCSCAHGYVLGDDSKSCVST 39
Score = 44.7 bits (106), Expect = 1e-06
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74
C G C C C+C G +L +DS +C
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 55.9 bits (135), Expect = 3e-09
Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 10/103 (9%)
Query: 11 VCDGKTDCPNGADEGPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
+ D +E D +C+ C CTC G N C
Sbjct: 22 AREVFEDSDKT-NEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKN----C 76
Query: 69 Q-DMNEC--EQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
+ + G C Q C + S +CSC GY L + C
Sbjct: 77 ELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 44.4 bits (105), Expect = 2e-05
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 18 CPNGADEGPGCDLA---ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNE- 73
C G EG C+L C G C CH +C+C G L+++ C
Sbjct: 67 CLEGF-EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 125
Query: 74 -CEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
C + + + + + G D+ T K +
Sbjct: 126 PCGKQT----LERRKRSVAQATSSSGEA--PDSITWKPYD 159
Score = 33.2 bits (76), Expect = 0.11
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 5/64 (7%)
Query: 40 CSN--TCHPTPLGALCTCPPGEILSNDSVTCQDMNECE-QPGYCSQMCTNTKGSYICSCN 96
C A T GE + DS+T + + + P + + +
Sbjct: 127 CGKQTLERRKRSVAQATSSSGE--APDSITWKPYDAADLDPTENPFDLLDFNQTQPERGD 184
Query: 97 EGYV 100
Sbjct: 185 NNLT 188
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 53.1 bits (128), Expect = 1e-08
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 12 CDGKTDCPNGADEGPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69
+ + +E D +C+ L C C C G N C+
Sbjct: 29 REVFENTEKT-NEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKN----CE 83
Query: 70 -DMNECEQPGYCSQMCTNTKGS-YICSCNEGYVLEYDNHTC 108
D + G C Q C S +CSC GY L D +C
Sbjct: 84 LDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
Score = 31.2 bits (71), Expect = 0.29
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 18 CPNGADEGPGCDLA-ECKHKFGLCSNTCHPTPLGA-LCTCPPGEILSNDSVTCQDMNECE 75
C G EG C+L C K G C C LC+C G L+ D +C
Sbjct: 73 CQVGF-EGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC---KPAV 128
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 50.2 bits (120), Expect = 2e-08
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 68 CQDMNECE-QPGYCSQMCTNTKGS-YICSCNEGYVLEYDNHTCKAI 111
D C + G C Q C++ G+ C C+EGY L D +C
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 47
Score = 37.1 bits (86), Expect = 6e-04
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 29 DLAECKHKFGLCSNTCHPTPLG-ALCTCPPGEILSNDSVTCQDMNEC 74
D C ++ G C C C C G L D V+C E
Sbjct: 4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 51.5 bits (124), Expect = 3e-08
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 11 VCDGKTDCPNGADEGPGC--DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSV 66
+ D +E D +C+ C N C CTC G +
Sbjct: 22 AREVFEDSDKT-NEFWNKYKDGDQCET--SPCQNQGKCKDGLGEYTCTCLEGF----EGK 74
Query: 67 TCQ-DMNEC--EQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
C+ + G C Q C + S +CSC GY L + C
Sbjct: 75 NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 32.6 bits (75), Expect = 0.088
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 24 EGPGCDLA---ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75
EG C+L C G C CH +C+C G L+++ C
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC---IPTG 123
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 52.0 bits (125), Expect = 1e-07
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 39 LCSN--TCHPTPLGALCTCPPGEILSNDSVTCQ-DMNEC--EQPGYCSQMCTNTKGSYIC 93
C + +C + G CTC PG + C+ NEC E+ C C + SY C
Sbjct: 12 PCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHFCLPGQESYTC 67
Query: 94 SCNEGYVLEYDNHTC 108
SC +GY L D+ C
Sbjct: 68 SCAQGYRLGEDHKQC 82
Score = 35.1 bits (81), Expect = 0.044
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 17 DCPNGADEGPGCDLAE---CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNE 73
C G EG C+LA+ + C + C P C+C G L D C ++
Sbjct: 29 TCSPG-YEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQ 87
Query: 74 C 74
C
Sbjct: 88 C 88
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 47.1 bits (112), Expect = 2e-07
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 67 TCQDMNECEQPGYCSQMCTNTKG-SYICSCNEGYVLEYDNHTCKAI 111
TC N G C Q C N+ +CSC EGY L + +C+
Sbjct: 1 TCNIKN-----GRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPA 41
Score = 33.2 bits (76), Expect = 0.013
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 33 CKHKFGLCSNTCHPTPLG-ALCTCPPGEILSNDSVTCQDMNEC 74
C K G C C + +C+C G L+ + +C+
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 48.9 bits (117), Expect = 3e-07
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 17 DCPNGADEGPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ-DMNE 73
D +C +C +C C P N C+ ++
Sbjct: 32 KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRN----CETHKDD 87
Query: 74 CE----QPGYCSQMCTNTKGS-YICSCNEGYVLEYDNHTC 108
+ G C Q C++ G+ C C+EGY L D +C
Sbjct: 88 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE-QPGYCSQMCTNTKGS 90
ECK CS + ++ D ++C P C + S
Sbjct: 16 ECKE--EQCSFEE----AREIFKDAERT--KLFWISYSDGDQCASSPCQNGGSCKDQLQS 67
Query: 91 YICSCNEGY 99
YIC C +
Sbjct: 68 YICFCLPAF 76
Score = 30.8 bits (70), Expect = 0.40
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 6/49 (12%)
Query: 28 CDLAECKHKFGLCSNTCHPTPLGA-LCTCPPGEILSNDSVTCQDMNECE 75
+ ++ G C C C C G L D V+C
Sbjct: 88 QLICVNEN--GGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC---TPTV 131
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 8e-07
Identities = 60/344 (17%), Positives = 111/344 (32%), Gaps = 109/344 (31%)
Query: 46 PTP-LGALCTCP---PGEI----LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNE 97
TP L + P P I L++ VT + + PG ++ + KG+ S +
Sbjct: 224 NTPDKDYLLSIPISCPL-IGVIQLAHYVVTAKLLGF--TPG---ELRSYLKGATGHS--Q 275
Query: 98 GYVL-----------EYDNHTCKAINHSAAFLI---------ISNRHSILVADLEEKGKD 137
G V + KAI + F I ++ ++ D E +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 138 HRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRL---NRIEVCDENGTNRIVL-------- 186
+ + +S L + + ++ +S L ++E+ NG +V+
Sbjct: 334 VPSPMLSISNLTQEQ------VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 187 ----------AKDNITQPRGMMLD--PSPGTRWL-----FWTDWGENPRIERIGMDGSNR 229
A + Q R + R+L F + P + I D
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV-PASDLINKD---- 442
Query: 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSL-EIKTNVNYS---TIFRK-LYW 284
++ + + N + I VY D D L + +++ I R + W
Sbjct: 443 --LVKNNVSF-NAKDIQIP---VY------DTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 285 -----------IDEGGNGVPLKIGK---ANMDGSNASILVSGQL 314
+D G G +G N DG+ ++V+G L
Sbjct: 491 ETTTQFKATHILDFGPGGAS-GLGVLTHRNKDGTGVRVIVAGTL 533
Score = 40.0 bits (93), Expect = 0.002
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 27/122 (22%)
Query: 356 GSNRSTI-ISTKIYWP-NGL------TLDIATRRVYFAD---SKLD----FIDFCNY--- 397
GS + + T ++ + L L T D + + F+ + +
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 398 -DGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKTPLFCITRN 456
G+ +L + EF N + N + ALA L +KT + +N
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL------QENDTTLVKTKE--LIKN 125
Query: 457 YF 458
Y
Sbjct: 126 YI 127
Score = 38.1 bits (88), Expect = 0.006
Identities = 51/311 (16%), Positives = 96/311 (30%), Gaps = 107/311 (34%)
Query: 193 QPRGMMLD---PSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS---TKIYWPNGLTLD 246
Q +GM +D S + ++ + +N + G + I+ + G
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVW--NRADNHFKDTYGFSILD---IVINNPVNLTIHFGGEKG 1681
Query: 247 IATRRVYFA---DSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGV--------P-- 293
R Y A ++ +D K+ +I +N + + G+ P
Sbjct: 1682 KRIRENYSAMIFETIVDG-KLKTEKIFKEINEHS--TSYTF--RSEKGLLSATQFTQPAL 1736
Query: 294 ----------LK-IGKANMDGSNA--SILVSGQLYEALA-----LDLENGM--LYYSTLK 333
LK G D + A S+ G+ Y ALA + +E+ + ++Y
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSL---GE-YAALASLADVMSIESLVEVVFY---- 1788
Query: 334 CTRWLFWTDWGENPRIE----RIGMDGSNRSTIIST-----------KIYWPNGLTLDIA 378
R + PR E GM N + ++ ++ G ++I
Sbjct: 1789 --RGMTMQV--AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 379 TRRVYFADSKLDFIDFCNYDGTGRQQVIL------IDLMVEFTNDLMGDNGVPALALD-- 430
NY+ QQ + +D + N + + + L
Sbjct: 1845 -----------------NYNVEN-QQYVAAGDLRALDTVTNVLNFI-KLQKIDIIELQKS 1885
Query: 431 --LEN--GMLY 437
LE G L+
Sbjct: 1886 LSLEEVEGHLF 1896
Score = 32.3 bits (73), Expect = 0.43
Identities = 39/237 (16%), Positives = 59/237 (24%), Gaps = 104/237 (43%)
Query: 247 IATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWI--------------------- 285
IA DS F + L++I
Sbjct: 283 IAE-----TDSWESFFV----------SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 286 DEGGNGVP---L------------KIGKANM---DGSNASI-L--------VSG---QLY 315
E GVP L + K N G I L VSG LY
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTK---IYWP-- 370
L L L K L + RI S R S + + P
Sbjct: 388 -GLNLTLRK-------AKAPSGL------DQSRIP-----FSERKLKFSNRFLPVASPFH 428
Query: 371 --------NGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQV------ILIDLMVE 413
+ + D+ V F + + +DG+ + + ++D ++
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Score = 31.9 bits (72), Expect = 0.60
Identities = 44/304 (14%), Positives = 84/304 (27%), Gaps = 115/304 (37%)
Query: 212 DWGENPRIERIGMDGSNRSTIISTKIYWP-NGLTLDIATRRVYFADSKLDFIDCKSLEIK 270
+W ENP + ++ ++S I P G+ +A Y + K L
Sbjct: 217 EWLENPS------NTPDKDYLLSIPISCPLIGVI-QLAH---YV-------VTAKLL--- 256
Query: 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYS 330
+ L G+ ++ + A E+ + S
Sbjct: 257 -GFTPGELRSYLKGATGHSQGLV------------TAVAI------AETDSWES--FFVS 295
Query: 331 TLKCTRWLFW----------------------TDWGEN-P----------------RIER 351
K LF+ + E P + +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 352 IGMDGSNRSTI-ISTKIYWPNG-----LT--------LDIATRRVYFADSKLD--FIDFC 395
+ IS NG ++ L++ R+ A S LD I F
Sbjct: 356 TNSHLPAGKQVEISLV----NGAKNLVVSGPPQSLYGLNLTLRKA-KAPSGLDQSRIPF- 409
Query: 396 NYDGTGRQQVILID-LMVE--FTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKTPLFC 452
+ R+ L V F + L+ + DL + ++ A+ ++ P++
Sbjct: 410 ----SERKLKFSNRFLPVASPFHSHLLVP-ASDLINKDLVKNNVSFN---AKDIQIPVYD 461
Query: 453 ITRN 456
T +
Sbjct: 462 -TFD 464
Score = 30.4 bits (68), Expect = 1.6
Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 66/176 (37%)
Query: 45 HPTPLG---ALCTCPPGEILS-NDSV--------TCQDMNECEQPGYCSQMCTNTKGSY- 91
H LG AL + +++S V T Q ++ G + +Y
Sbjct: 1762 HS--LGEYAALASL--ADVMSIESLVEVVFYRGMTMQVAVPRDELG---------RSNYG 1808
Query: 92 ICSCNEGYVLEYDNHTCKAINHSAAFLI---ISNRHSILVADLEEKGKDHRAQDIV---V 145
+ + N G V + + A + + R LV E IV V
Sbjct: 1809 MIAINPGRV-------AASFSQEALQYVVERVGKRTGWLV----E---------IVNYNV 1848
Query: 146 SGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
V G + LD + V + +I + + + + L+
Sbjct: 1849 ENQQYV-------AAGDLRALD-TV--TNVLNFIKLQKIDIIELQKS----LSLEE 1890
Score = 29.6 bits (66), Expect = 2.7
Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 65/181 (35%)
Query: 310 VSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 369
+ L E + L+ ++ L WL ENP + ++ ++S I
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWL------ENPS------NTPDKDYLLSIPISC 238
Query: 370 P-NGLTLDIATRRVYFADSKLDFIDFCNYDG-------------TGRQQVILIDLMV--- 412
P G+ +A ++ G TG Q ++ + +
Sbjct: 239 PLIGVI-QLAH-----------YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 413 ----EFTNDLMGDNGVPALAL---------------DLENGMLYYSTEGAEFLKTPLFCI 453
F + A+ + L +L S E E + +P+ I
Sbjct: 287 DSWESFF-----VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 454 T 454
+
Sbjct: 342 S 342
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 47.5 bits (113), Expect = 1e-06
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 65 SVTCQDMNECEQP--GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109
D+NEC CS C N G Y CSC Y L D C
Sbjct: 111 YYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157
Score = 39.8 bits (93), Expect = 4e-04
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 27 GCDLAECKHKFGL-CSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70
D+ EC + CS+ C+ G C+CPP L +D C
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 44.3 bits (105), Expect = 2e-06
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 80 CSQMCTNTKGS-YICSCNEGYVLEYDNHTCKAI 111
C Q C++ G+ C C+EGY L D +C
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 41
Score = 33.9 bits (78), Expect = 0.006
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 33 CKHKFGLCSNTCHPTPLG-ALCTCPPGEILSNDSVTCQ 69
C ++ G C C C C G L D V+C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 46.1 bits (109), Expect = 4e-06
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 65 SVTCQDMNECEQP----GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
+D++EC+ C C N G + CSC GYVL + TC +
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
Score = 35.3 bits (81), Expect = 0.018
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 40 CSNTCHPTPLGALCTCPPGEILSNDSVTCQDMN 72
C + CH G C+C G +L + TC + +
Sbjct: 137 CDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 45.6 bits (107), Expect = 9e-06
Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 10/142 (7%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
+C++ VCDG DC NG DE C L + C
Sbjct: 68 QCISKLFVCDGHNDCRNGEDE-KDCTLPTKAGDKFIGDVCFD--------HCTKRRPEHM 118
Query: 64 DSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNR 123
S + D A +H
Sbjct: 119 TLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFA-DHRLTIHPPEED 177
Query: 124 HSILVADLEEKGKDHRAQDIVV 145
LV + + D IV
Sbjct: 178 GLGLVGEFDGYNFDRFVGHIVH 199
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 46.5 bits (110), Expect = 9e-06
Identities = 31/259 (11%), Positives = 69/259 (26%), Gaps = 46/259 (17%)
Query: 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFW 210
+E LA G I+ + + I +G +I + + G+ G
Sbjct: 34 LENLASAP-DGTIFVTNHEVGEIVSITPDGNQQIHATVEG--KVSGLAFTS-NGDLVATG 89
Query: 211 TDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIK 270
+ P + + DG+ + + + NG+T + + ADS I
Sbjct: 90 WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWL------ 142
Query: 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYS 330
++ ++ + +G L
Sbjct: 143 --IDVVQPSGSIWLEHPMLARSNSESVFPAANG--------------LKRF--------- 177
Query: 331 TLKCTRWLFWTDWGENPRIERIGMD--GSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388
+L+ ++ + + RI +D I + + D +Y A
Sbjct: 178 ----GNFLYVSNTEKM-LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD-VEGNLYGATHI 231
Query: 389 LDFIDFCNYDGTGRQQVIL 407
+ + +I
Sbjct: 232 YNSVV--RIAPDRSTTIIA 248
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 45.4 bits (107), Expect = 3e-05
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 23/77 (29%)
Query: 41 SNTCHPTPLGALCT-----------CPPGEILSNDSVTCQDMNECE------QPGYCSQM 83
SN C P GA C+ CP G + C+D++EC
Sbjct: 8 SNPCFP---GAQCSSFPDGSWSCGFCPVG--FLGNGTHCEDLDECALVPDICFSTSKVPR 62
Query: 84 CTNTKGSYIC-SCNEGY 99
C NT+ + C C Y
Sbjct: 63 CVNTQPGFHCLPCPPRY 79
Score = 35.8 bits (82), Expect = 0.034
Identities = 27/111 (24%), Positives = 35/111 (31%), Gaps = 26/111 (23%)
Query: 16 TDCPNGAD-EGPGC-DLAECKHKFGLCSN-----TCHPTPLGALC-TCPPG--------- 58
CP G G C DL EC +C + C T G C CPP
Sbjct: 28 GFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGV 87
Query: 59 --EILSNDSVTCQDMNECEQPGY-------CSQMCTNTKGSYICSCNEGYV 100
E + C+ N C+ + C + + Y C C GY
Sbjct: 88 GLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYA 138
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 43.7 bits (102), Expect = 4e-05
Identities = 23/145 (15%), Positives = 37/145 (25%), Gaps = 14/145 (9%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
C++ CDG+ DC +G+DE P C ++ C N
Sbjct: 67 ECIHDLLFCDGEKDCRDGSDEDP----ETCSLNITHVGSSYTGLATWTSC------EDLN 116
Query: 64 DSVTCQDMNECEQPGYCSQMC-TNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISN 122
+ + + SY ++ V L
Sbjct: 117 PDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLK 176
Query: 123 RHS---ILVADLEEKGKDHRAQDIV 144
S ++ D DH IV
Sbjct: 177 GQSEGYGVICDFNLGDDDHADCKIV 201
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 44.0 bits (104), Expect = 5e-05
Identities = 42/325 (12%), Positives = 85/325 (26%), Gaps = 88/325 (27%)
Query: 99 YVLEYDNHTCKAINHSAAFLI------ISNRHSILVADLE--------EKGKDHRAQDIV 144
+ +H + + F+ +ILV D K + +
Sbjct: 38 VIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS 97
Query: 145 VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLA----------KDNITQP 194
+ G+ + D L+++ D + +L +++ QP
Sbjct: 98 IDT------------DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQP 145
Query: 195 RGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS---------NRSTIISTKIYWPNGLTL 245
+ ++PS G +F +D N RI + G + S+ + P+ L L
Sbjct: 146 TDVAVEPSTGA--VFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLAL 203
Query: 246 DIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305
++ AD + I C +I A+ +
Sbjct: 204 VPHLDQLCVADRENGRIQC--------------------FKTDTKEFVREIKHASFGRNV 243
Query: 306 ASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIST 365
+I NG Y+ D + + +
Sbjct: 244 FAI----SYIPGFLFA-VNGKPYFG-----------DQE-PVQGFVMNFSSGEIIDVFKP 286
Query: 366 ---KIYWPNGLTLDIATRRVYFADS 387
P+ + VY D+
Sbjct: 287 VRKHFDMPHDIVAS-EDGTVYIGDA 310
Score = 39.8 bits (93), Expect = 0.001
Identities = 40/291 (13%), Positives = 82/291 (28%), Gaps = 74/291 (25%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKD-NITQPRGMMLDPSPGTRWLFWTDWGENPRI 219
++ + + + I + +++DP+ G+N
Sbjct: 35 NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE---ILQSSGKN--- 88
Query: 220 ERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIF 279
Y P+GL++D + D L + K + +
Sbjct: 89 ----------------LFYLPHGLSID-TDGNYWVTDVALHQV------FKLDPH----- 120
Query: 280 RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRW 337
G L +G++ GS+ + +A++ G ++ S
Sbjct: 121 --------SKEGPLLILGRSMQPGSDQ-----NHFCQPTDVAVEPSTGAVFVS------- 160
Query: 338 LFWTDWGENPRIERIGMDGS---------NRSTIISTKIYWPNGLTLDIATRRVYFADSK 388
D N RI + G + S+ + P+ L L ++ AD +
Sbjct: 161 ----DGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE 216
Query: 389 LDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYS 439
I D + I F ++ + +P NG Y+
Sbjct: 217 NGRIQCFKTDTKEFVREIKHA---SFGRNVFAISYIPGFLFA-VNGKPYFG 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 43.9 bits (103), Expect = 8e-05
Identities = 39/339 (11%), Positives = 82/339 (24%), Gaps = 66/339 (19%)
Query: 85 TNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDI- 143
T G+ + + + C + H+ L G+ H + I
Sbjct: 110 TTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLV----GEQHPTRLID 165
Query: 144 --------VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIE----VCDENGTNRIVLAKDNI 191
V SGL V + + + + + N + +++
Sbjct: 166 FEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKG 225
Query: 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTI-ISTKIYWPNGLTLDIATR 250
G P G L++ W ++ R + + W + +
Sbjct: 226 QNCNGAETHPING--ELYFNSWN-AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN 282
Query: 251 RVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI-- 308
Y +I ++++ ++ T +I G G + G A +
Sbjct: 283 YAYIVVVNQHYI------LRSDYDWKTKRLTTPYIVCGQQGAK---DWVDGVGKKARMHA 333
Query: 309 ---LVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII-- 363
+ + Y+ D N I + G +T
Sbjct: 334 PRQGTFVKNPAYKGSS-DEYDFYFC-----------DRE-NHCIRILTPQG-RVTTFAGR 379
Query: 364 ---------------STKIYWPNGLTLDIATRRVYFADS 387
+ P G+ D + D
Sbjct: 380 GSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR 418
Score = 34.3 bits (78), Expect = 0.070
Identities = 24/212 (11%), Positives = 44/212 (20%), Gaps = 45/212 (21%)
Query: 190 NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIAT 249
+ DP L+ E I + ST+ S +
Sbjct: 135 GFGGAVWLSFDPK-NHNHLYLVG--EQHPTRLIDFEKEYVSTVYSGLSK-VRTICWTHEA 190
Query: 250 RRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309
+ + + N + + I + L
Sbjct: 191 DSMIITNDQ------------NNNDRPNNY----------------ILTRESGFKVITEL 222
Query: 310 VSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTI-ISTKIY 368
GQ NG LY+ W ++ R + +
Sbjct: 223 TKGQNCNGAETHPINGELYF-----------NSWN-AGQVFRYDFTTQETTPLFTIQDSG 270
Query: 369 WPNGLTLDIATRRVYFADSKLDFIDFCNYDGT 400
W + + Y +I +YD
Sbjct: 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK 302
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 43.9 bits (103), Expect = 9e-05
Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 8/104 (7%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
V +T CD C+ + G+C C P LG+ C C + +
Sbjct: 426 IVQVTFDCDCACQAQ-AEPNSHRCNNGNGTFECGVCR--CGPGWLGSQCECSEEDYRPSQ 482
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
C CSQ G C C+ + C
Sbjct: 483 QDECSPREG---QPVCSQRGECLCGQ--CVCHSSDFGKITGKYC 521
Score = 33.9 bits (77), Expect = 0.11
Identities = 21/123 (17%), Positives = 30/123 (24%), Gaps = 15/123 (12%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHK--FGLCSNTCHPTPLG----------A 51
C+N +V G C E K + + P+G
Sbjct: 373 TCLN-NEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTF 431
Query: 52 LCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI 111
C C +S C + N + G C C C C+E C
Sbjct: 432 DCDCACQAQAEPNSHRCNNGNGTFECGVCR--CGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 112 NHS 114
Sbjct: 490 EGQ 492
Score = 33.9 bits (77), Expect = 0.12
Identities = 17/104 (16%), Positives = 27/104 (25%), Gaps = 12/104 (11%)
Query: 13 DGKTDCPNGADEGPGCDLAECKHKFGLCSN-----TCHPTPLGALCTCPPGEILSNDSVT 67
G C G C+ +C C+ C GAL D
Sbjct: 583 CGSCVCIQPGSYGDTCE--KCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRD--E 638
Query: 68 CQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI 111
+ + E + G + CT C + D+ +
Sbjct: 639 IESVKELKDTGKDAVNCTYKN---EDDCVVRFQYYEDSSGKSIL 679
Score = 31.6 bits (71), Expect = 0.62
Identities = 24/128 (18%), Positives = 34/128 (26%), Gaps = 38/128 (29%)
Query: 4 RCVNLTKVCDGKTDCPNGA---DEGPG---------CDLAECKHKFG-LCSN-------- 42
VC + +C G CD C G +CS
Sbjct: 487 SPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD 546
Query: 43 -TCHPTPLGALC--TCPPGEILSNDSVTCQDMNECE-------QPGY----CSQMCTNTK 88
C G C T +S++ + C +CE QPG C + T
Sbjct: 547 CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPD 606
Query: 89 GSYICSCN 96
C+
Sbjct: 607 A---CTFK 611
Score = 29.7 bits (66), Expect = 2.2
Identities = 12/83 (14%), Positives = 18/83 (21%), Gaps = 3/83 (3%)
Query: 16 TDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75
C N L C + + C + + V +D +
Sbjct: 372 ATCLNN---EVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ 428
Query: 76 QPGYCSQMCTNTKGSYICSCNEG 98
C C CN G
Sbjct: 429 VTFDCDCACQAQAEPNSHRCNNG 451
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 42.4 bits (100), Expect = 2e-04
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 72 NEC--EQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNR 123
NEC E+ C C + SY CSC +GY L D+ C + A ++ S +
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEK 56
Score = 36.2 bits (84), Expect = 0.015
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 14 GKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNE 73
K +C +G C + C P C+C G L D C ++
Sbjct: 1 AKNECHPERTDG--------------CQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQ 46
Query: 74 C 74
C
Sbjct: 47 C 47
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding
module, COMP repeat, calcium, cell membrane, coated
PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 38.7 bits (90), Expect = 3e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTP 48
CV +CDG DC +GADE A C + + T
Sbjct: 21 VCVPERWLCDGDKDCADGADE-SIA--AGCLYNSTGSGSGSGSTE 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 54/360 (15%), Positives = 108/360 (30%), Gaps = 102/360 (28%)
Query: 130 DLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRI--EVCDENGTNRIVLA 187
D E ++ +DI+ + ++ + D + + E D I+++
Sbjct: 8 DFETGEHQYQYKDIL---SVFEDAFVDNFDCKDV--QDMPKSILSKEEIDH-----IIMS 57
Query: 188 KDNITQPRGMMLDPSPGTRWLFWT--DWGENPRIERI--GMDGSNRSTIISTKIYWPNGL 243
KD ++ T LFWT E +++ + N ++S
Sbjct: 58 KDAVSG-----------TLRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 244 TLD----IATRRVYFADSKLDFIDCKSLEIKTNVN----YSTIFRKLYWIDEGGNGVPLK 295
++ I R + D+++ F K NV+ Y + + L + N V +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQV-F-------AKYNVSRLQPYLKLRQALLELRPAKN-VLID 156
Query: 296 IGKANMDGSNASILVSGQLYEALALDLENGMLYYSTL-KCTR------------------ 336
G + GS + + + +++ L C
Sbjct: 157 -G---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 337 WLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGL-TLD------------------I 377
W +D N ++ RI + ++ +K Y N L L +
Sbjct: 213 WTSRSDHSSNIKL-RIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 378 ATRRVYFADSKL-DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGML 436
TR ++ DF+ + L + T D + + LD L
Sbjct: 271 TTR-----FKQVTDFL-----SAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRPQDL 318
Score = 41.4 bits (96), Expect = 7e-04
Identities = 61/399 (15%), Positives = 115/399 (28%), Gaps = 120/399 (30%)
Query: 100 VLE--YDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYD 157
VL + A N S L+ + R + L H + D L E +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL- 306
Query: 158 WIGGHIYWLDSRLNRI--EVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE 215
+ +LD R + EV TN L+ I + W W +
Sbjct: 307 ----LLKYLDCRPQDLPREVLT---TNPRRLSI--I----AESIRDGL-ATWDNW----K 348
Query: 216 NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI-KTNVN 274
+ +++ +TII + + L+ A R F L + + +
Sbjct: 349 HVNCDKL-------TTIIESSL-----NVLEPAEYRKMF----------DRLSVFPPSAH 386
Query: 275 YSTIFRKLYWIDEGGNGVPLKIGK------ANMDGSNASILVSGQLYEALALDLEN---- 324
TI L W D + V + + K ++I + +Y L + LEN
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYAL 445
Query: 325 --GML-YYSTLKCTRWLFWTDWGENPRIER------IG--MDGSNRSTIIS--TKIYWPN 371
++ +Y+ K + P IG + ++ ++
Sbjct: 446 HRSIVDHYNIPKT-----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--- 497
Query: 372 GLTLDIATRRVYFADSKL---------------DFIDFCNYDGTGRQQVILIDLMVE-FT 415
LD F + K+ Y + + D E
Sbjct: 498 ---LDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPKYERLV 545
Query: 416 NDLM------GDNGVPA-------LALDLENGMLYYSTE 441
N ++ +N + + +AL E+ ++
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 33.3 bits (75), Expect = 0.20
Identities = 42/284 (14%), Positives = 85/284 (29%), Gaps = 85/284 (29%)
Query: 136 KDHRAQDIVVSGLD------LVEGLAYDW-----IGGHIYWLD-SRLNRIEVCDENGTNR 183
+ A+++++ G+ + + + + I+WL+ N E E
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 184 IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGL 243
+ N T +D N ++ RI + ++ +K Y N L
Sbjct: 206 LYQIDPNWTSR----------------SDHSSNIKL-RIHSIQAELRRLLKSKPY-ENCL 247
Query: 244 -TLD-IATRRVYFADSKLDF-IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKAN 300
L + + + A F + CK L + T + + L +
Sbjct: 248 LVLLNVQNAKAWNA-----FNLSCKIL-LTT--RFKQVTDFL---------SAATTTHIS 290
Query: 301 MDGSNASILVSGQLYEALA--LDLENGMLYYSTLKC----------------TRWLFWTD 342
+D + + L ++ L LD L L W W
Sbjct: 291 LDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-- 347
Query: 343 WGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386
++ +++ +TII + + L+ A R F
Sbjct: 348 --KHVNCDKL-------TTIIESSL-----NVLEPAEYRKMFDR 377
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 41.3 bits (97), Expect = 4e-04
Identities = 41/277 (14%), Positives = 88/277 (31%), Gaps = 35/277 (12%)
Query: 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP--------SPG 204
G + +++ ++ + + D T + + R + P
Sbjct: 93 GATINNTTQTLWFGNTVNSAVTAIDAK-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDA 151
Query: 205 TRWLFWTDWGENPRIERIGMDGSNRSTIISTKI--YWPNGLTLDIATRRVYFA--DSKLD 260
T ++ + G+ I + DG N + + GL LD +R+Y D +L
Sbjct: 152 TNTVYISGIGKESVIWVV--DGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELI 209
Query: 261 FIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI--LVSGQLYEAL 318
ID +I + ++ ++I+ + + + + + +G + +
Sbjct: 210 TIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269
Query: 319 ALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTI--ISTKIYWPNGLTLD 376
A +L+ + T ++ I D + + T + PN L L
Sbjct: 270 AAPESLAVLFNPA---RNEAYVTHRQAG-KVSVI--DAKSYKVVKTFDTPTH-PNSLALS 322
Query: 377 IATRRVYFA---DSKLDFIDFCNYDGTGRQQVILIDL 410
+ +Y + S T VI I L
Sbjct: 323 ADGKTLYVSVKQKSTKQQEA------TQPDDVIRIAL 353
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 40.6 bits (94), Expect = 4e-04
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 11/131 (8%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPG-CDLAECKHKFGLCSNTCHPTPLG---------ALC 53
C++ VCDG DC N DE P CD + K + L
Sbjct: 66 ECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITA 125
Query: 54 TCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINH 113
+ + + +E E+ G N KG Y + +L + +
Sbjct: 126 SKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYY-NFASRRLILLPTDDHDDHLAV 184
Query: 114 SAAFLIISNRH 124
+F N
Sbjct: 185 VCSFNRGDNER 195
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 37.0 bits (86), Expect = 4e-04
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
+C+ C+G DC N ADE
Sbjct: 19 KCLPQLLHCNGVDDCGNQADE 39
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 38.0 bits (89), Expect = 4e-04
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN 42
+C++ VCD DC +G+DE C + C C++
Sbjct: 14 KCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNS 51
Score = 33.4 bits (77), Expect = 0.018
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
C+ CD DC +G+DE
Sbjct: 53 TCIPQLWACDNDPDCEDGSDE 73
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 41.0 bits (97), Expect = 5e-04
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 161 GHIYWLDSRLNRIEVCDENGT-----NRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE 215
I D+ +RI++ D+ G + P + + + G + T+
Sbjct: 41 NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIV--TERSP 98
Query: 216 NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 258
+I+ G +T + P G+T+D R+ + K
Sbjct: 99 THQIQIYNQYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECK 140
Score = 32.5 bits (75), Expect = 0.20
Identities = 24/151 (15%), Positives = 57/151 (37%), Gaps = 21/151 (13%)
Query: 119 IISNRHSILVADLEEKGKDHRAQ----------DIVVSGLDLVEGLAYDWIGGHIYWLDS 168
++ N I+V + + H+ Q + L G+ D G I ++
Sbjct: 84 VVRNSGDIIVTE---RSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVEC 139
Query: 169 RLNRIEVCDENGTN-RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227
++ R+ + D+NG ++ P G++++ +F +D ++ +G
Sbjct: 140 KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK-QE--IFISDNR-AHCVKVFNYEGQ 195
Query: 228 NRSTIIST-KIYWPNGLTLDIATRRVYFADS 257
I +P G+ ++ + + AD+
Sbjct: 196 YLRQIGGEGITNYPIGVGIN-SNGEILIADN 225
Score = 32.2 bits (74), Expect = 0.29
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQ-PRGMMLDPSPGTRWLFWTDWGENPRI 219
I+ D+R + ++V + G + + IT P G+ ++ + G + D N +
Sbjct: 175 QEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN-GE--ILIADNHNNFNL 231
Query: 220 ERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADS 257
DG S + S K + L V A
Sbjct: 232 TIFTQDGQLISALESKVKHAQCFDVALM-DDGSVVLASK 269
Score = 30.2 bits (69), Expect = 1.4
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 12/71 (16%)
Query: 318 LALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 377
+A+ +G + T+ +I+ G +T + P G+T+D
Sbjct: 82 VAVVRNSGDIIV-----------TERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVD- 129
Query: 378 ATRRVYFADSK 388
R+ + K
Sbjct: 130 NKGRIIVVECK 140
>2fyj_A Low-density lipoprotein receptor-related protein 1; double
module, complement type repeat, calcium, beta-2
hairpin, loop-structures; NMR {Homo sapiens} PDB:
2fyl_B
Length = 82
Score = 37.6 bits (88), Expect = 7e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAEC 33
RC+ ++ CD DC + +DE C C
Sbjct: 16 RCIPISWTCDLDDDCGDRSDESASCAYPTC 45
Score = 33.8 bits (78), Expect = 0.015
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
RC+N+ CD DC + +DE
Sbjct: 57 RCININWRCDNDNDCGDNSDE 77
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 40.5 bits (94), Expect = 7e-04
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 9/93 (9%)
Query: 28 CDLAECKHKFGLCS--NTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQP-----GYC 80
C + CS C G C C + + C ++ G
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCVAEGSPQRVNGKVKGRI 60
Query: 81 SQMCTNTKGSYICSCNEGYVLEYDNHTCKAINH 113
+ + + YV+ + AI+
Sbjct: 61 FVGSSQVPVVFENTDLHSYVVMNHGRSYTAIST 93
Score = 38.2 bits (88), Expect = 0.004
Identities = 9/49 (18%), Positives = 12/49 (24%), Gaps = 5/49 (10%)
Query: 69 QDMNECEQ-PGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTCKAINHS 114
C CS C + + C C Y + C A
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTG--NGRQCVAEGSP 49
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 38.3 bits (90), Expect = 0.001
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 29 DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQ-DMNECE-QPGYCSQ-- 82
D+ EC C + C T C C G C+ D+NEC P C
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPR----CEIDVNECVSNP--CQNDA 57
Query: 83 MCTNTKGSYICSCNEGY 99
C + G + C C GY
Sbjct: 58 TCLDQIGEFQCICMPGY 74
Score = 36.0 bits (84), Expect = 0.006
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 67 TCQDMNECEQPGY-CSQ--MCTNTKGSYICSCNEGY 99
+ QD++EC C C NT GS+ C C +GY
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGY 36
Score = 34.5 bits (80), Expect = 0.021
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 17 DCPNGADEGPGC--DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQ-DM 71
C G GP C D+ EC C N TC C C PG + V C+ +
Sbjct: 31 QCLQGY-TGPRCEIDVNECVSN--PCQNDATCLDQIGEFQCICMPG----YEGVHCEVNT 83
Query: 72 NECE-QPGYCSQ--MCTNTKGSYICSCNEGY 99
+EC P C C + + C C G+
Sbjct: 84 DECASSP--CLHNGRCLDKINEFQCECPTGF 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 40.3 bits (94), Expect = 0.001
Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 14/172 (8%)
Query: 110 AINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSR 169
+S+ + + + L+++G HR +G + + + +
Sbjct: 85 GFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQ-PKSVRFID-NTRLAIPLLE 142
Query: 170 LNRIEVCDENGTNRIVLAKDNITQPRGM---MLDPSPGTRWLFWTDWGENPRIERIGMDG 226
++V D N + + V + + P L+ + N + D
Sbjct: 143 DEGMDVLDIN-SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN-AVHVF--DL 198
Query: 227 SNRSTI--ISTKIYWPNGLTLDIATRRVYFA---DSKLDFIDCKSLEIKTNV 273
+ + W L D VY + + ID K+
Sbjct: 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT 250
Score = 34.5 bits (79), Expect = 0.062
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 21/121 (17%)
Query: 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT---QPRGMMLDPSPGTRWLF 209
+ IY D ++IEV D ++ +I +P + L SP ++L+
Sbjct: 307 HIVSGNTENKIYVSDMCCSKIEVYDLK-EKKVQ---KSIPVFDKPNTIAL--SPDGKYLY 360
Query: 210 WTDWGENPRIERIGMDGSNRSTI--ISTKIY----------WPNGLTLDIATRRVYFADS 257
+ G N E G + I T P GL + R + +D
Sbjct: 361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDF 420
Query: 258 K 258
Sbjct: 421 L 421
Score = 31.8 bits (72), Expect = 0.43
Identities = 40/279 (14%), Positives = 74/279 (26%), Gaps = 69/279 (24%)
Query: 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT----QPRGMMLDPSPGTR 206
++ + N + V D T + + ++ DP
Sbjct: 171 FVETISIPEHNELWVSQMQANAVHVFDLK-TLAYK---ATVDLTGKWSKILLYDPI--RD 224
Query: 207 WLFWTDWGENPRIERIGMDGSNRSTI--ISTKIYWPNGLTLDIATRRVYFA--------- 255
++ ++W I I D + I P GL L + +Y A
Sbjct: 225 LVYCSNWISE-DISVI--DRKTKLEIRKTDKIGL-PRGLLLSKDGKELYIAQFSASNQES 280
Query: 256 -DSKLDFIDCKSLEIKTNVN-----YSTIF----RKLYWIDEGGNGVPLKIGKANMDGSN 305
+L ++ + + K+Y D + + D
Sbjct: 281 GGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKI-EVY-----DLKE 334
Query: 306 ----ASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRST 361
SI V + +AL +G ++L+ + G N E G
Sbjct: 335 KKVQKSIPVFDKPN-TIALS-PDG----------KYLYVSCRGPNHPTEGYLKKGLVLGK 382
Query: 362 I--ISTKIY----------WPNGLTLDIATRRVYFADSK 388
+ I T P GL + R + +D
Sbjct: 383 VYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL 421
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 35.9 bits (83), Expect = 0.001
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
C +CDG DC +G DE
Sbjct: 23 ECYPQDWLCDGHPDCDDGRDE 43
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 40.3 bits (94), Expect = 0.001
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
+ ++ K CDG DC + +DE C C+ K C + C P + N
Sbjct: 215 KYISQMKACDGINDCGDQSDE-LCCK--ACQGKGFHCKSG----------VCIPSQYQCN 261
Query: 64 DSVTCQDMN-ECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
V C E G+ S T+ E ++
Sbjct: 262 GEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPKL 307
Score = 30.7 bits (69), Expect = 1.2
Identities = 13/106 (12%), Positives = 16/106 (15%), Gaps = 15/106 (14%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
C + G D + D F C N +
Sbjct: 177 ECTFTKRRTMGYQDFADVVCYTQKAD--SPMDDFFQCVNG----------KYISQMKACD 224
Query: 64 DSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109
C D E C C C
Sbjct: 225 GINDCGD-QSDEL--CCKACQGKGFHCKSGVCIPSQYQCNGEVDCI 267
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800
and PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 35.9 bits (83), Expect = 0.001
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
C +CDG DC +G DE
Sbjct: 21 ECYPQDWLCDGHPDCDDGRDE 41
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 35.0 bits (81), Expect = 0.002
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
+C+ ++ CDG+ DC +G DE
Sbjct: 14 QCIPVSWRCDGENDCDSGEDE 34
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 39.6 bits (92), Expect = 0.002
Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 32/132 (24%)
Query: 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIV-------------LAKDNITQPRGMML 199
+ Y + + Y D L+ + +G + QP GM +
Sbjct: 272 LIYYF-VDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTV 330
Query: 200 DPSPGTRWLFWTDWGENPRIERIGMDGSNRSTII--------------STKIYWPNGLTL 245
D G + D + + ++ + ST+ +P +
Sbjct: 331 DED-GN--FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICY 387
Query: 246 DIATRRVYFADS 257
D + A++
Sbjct: 388 D-GEGGYWIAEA 398
Score = 37.2 bits (86), Expect = 0.009
Identities = 33/306 (10%), Positives = 74/306 (24%), Gaps = 79/306 (25%)
Query: 118 LIISNRHSILVADLEEKGKDHRAQDIVVSG----------LDLVEGLAYDWIGGHIYWLD 167
+ +++L D R + I V + D + +
Sbjct: 136 IAAVGNNTVLAYQ----RDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE 191
Query: 168 SRLNRIEVCDENGTNRIVLAKDNIT---QPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224
+G + + T + + LD + WL++ D
Sbjct: 192 GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSN-KNFGRFNVK 248
Query: 225 DGSNRSTIISTKIYW-------PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYST 277
+ I ++ P + Y +D N S+
Sbjct: 249 TQEV-TLIKQLELSGSLGTNPGPYLIYYF-VDSNFYMSDQ----------------NLSS 290
Query: 278 IFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCT 335
+++ I G G A + + + +D E+G Y
Sbjct: 291 VYK----ITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVD-EDGNFYIV----- 339
Query: 336 RWLFWTDWGENPRIERIGMDGSNRSTII--------------STKIYWPNGLTLDIATRR 381
D + + ++ + ST+ +P + D
Sbjct: 340 ------DGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYD-GEGG 392
Query: 382 VYFADS 387
+ A++
Sbjct: 393 YWIAEA 398
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 38.5 bits (89), Expect = 0.003
Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 42/238 (17%)
Query: 160 GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRI 219
G + + + + I D N T + V T PR + + T + RI
Sbjct: 53 DGIGWIVVNNSHVIFAIDIN-TFKEVGRITGFTSPRYIHFLSD---EKAYVTQIWDY-RI 107
Query: 220 ERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIF 279
I + I+ I P+ +T ++ + +Y
Sbjct: 108 FII--NPKTYE--ITGYIECPDMDMESGSTEQMVQYGKYVYV---------NCWSYQN-- 152
Query: 280 RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLF 339
++ ID + V + + G +L +D + ++ T +
Sbjct: 153 -RILKIDTETDKVV------------DELTI-GIQPTSLVMD-KYNKMWTIT--DGGYEG 195
Query: 340 WTDWGENPRIERIGMDGSNRSTIISTKI---YWPNGLTLDIATRRVYFADSKLDFIDF 394
E P + RI D + K WP+ + L+ +Y+ ++ + +
Sbjct: 196 SPYGYEAPSLYRI--DAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPV 251
Score = 31.2 bits (70), Expect = 0.77
Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 35/223 (15%)
Query: 91 YICSCNEGYVLEYDNHTCKAIN--------HSAAF-----LIISNR--HSILVADLEEKG 135
+I N + D +T K + F ++ + I + + +
Sbjct: 57 WIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE 116
Query: 136 KDHRAQDIVVSGLDLVEGLAYDWI--GGHIYWLDSRL-NRIEVCDENGTNRIVLAKDNIT 192
I +D+ G + G ++Y NRI D T+++V
Sbjct: 117 ITGY---IECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTE-TDKVVDELTIGI 172
Query: 193 QPRGMMLDPSPGTRWL-------FWTDWGENPRIERIGMDGSNRSTIISTKI---YWPNG 242
QP +++D W E P + RI D + K WP+
Sbjct: 173 QPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRI--DAETFTVEKQFKFKLGDWPSE 229
Query: 243 LTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWI 285
+ L+ +Y+ ++ + + ++ + K Y +
Sbjct: 230 VQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGL 272
Score = 30.0 bits (67), Expect = 1.5
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 13/117 (11%)
Query: 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
+ EG Y + +Y +D+ + + + P + L+
Sbjct: 184 KMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-------EKQFKFKLGD--WPSEVQLNG 234
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 258
+ L+W + + R+ + D + + GLT++ VY AD+
Sbjct: 235 T--RDTLYWIN-NDIWRMP-VEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAI 287
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 37.3 bits (87), Expect = 0.003
Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 11 VCDGKTDCPNGADEGPGCDLAECK----HKFGLCSNTCHPTPLGALCTCPPGEILSNDSV 66
G C G +G CD +C G+C+ C C
Sbjct: 80 KLPGDCRCQYG-WQGLYCD--KCIPHPGCVHGICNE-------PWQCLCETNW----GGQ 125
Query: 67 TC-QDMNECEQPGYCSQ--MCTNT-KGSYICSCNEGY 99
C +D+N C C C+NT Y CSC EGY
Sbjct: 126 LCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY 162
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 34.7 bits (80), Expect = 0.003
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 3 DRCVNLTKVCDGKTDCPNGADEGPGC 28
CV +CDG DC +GADE
Sbjct: 18 HVCVPERWLCDGDKDCADGADESIAA 43
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 38.2 bits (88), Expect = 0.005
Identities = 23/118 (19%), Positives = 32/118 (27%), Gaps = 30/118 (25%)
Query: 4 RCVNLTKVC-------DGKTDCPNGADEGPG-------CDLAECKHKFG-LCSNTCHPTP 48
R N + +C G+ C G CD C+ G +C
Sbjct: 476 RKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLC 535
Query: 49 LGALCTCPPG-------EILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGY 99
C C PG + + EC G C +C C+ GY
Sbjct: 536 FCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCR--------CNVCECHSGY 585
Score = 33.9 bits (77), Expect = 0.11
Identities = 16/114 (14%), Positives = 27/114 (23%), Gaps = 19/114 (16%)
Query: 3 DRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTC-----------HPTPLGA 51
C + G C G G C+ +C +
Sbjct: 435 SLCHGKGFLECGICRCDTG-YIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG 493
Query: 52 LCTCPPGEILSNDS--VTCQDMNECEQPGYCSQMCTNTKG----SYICSCNEGY 99
C C ++ C+ + Y Q+C C C+ G+
Sbjct: 494 QCLCHTSDVPGKLIYGQYCE-CDTINCERYNGQVCGGPGRGLCFCGKCRCHPGF 546
Score = 33.9 bits (77), Expect = 0.12
Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 11/94 (11%)
Query: 16 TDCPNGADEGPGCDLAECKH-------KFGLCSNTCHPTPLGALCTCPPG-EILSNDSVT 67
+ C NG +C F + + G + V
Sbjct: 362 SFCSNGV-THRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 420
Query: 68 CQDMNECEQPGYCSQMCTN--TKGSYICSCNEGY 99
Q C +C IC C+ GY
Sbjct: 421 PQCECRCRDQSRDRSLCHGKGFLECGICRCDTGY 454
Score = 33.5 bits (76), Expect = 0.18
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 20/107 (18%)
Query: 13 DGKTDCPNGADEGPGCDLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQD 70
+C +G + P C EC C +C G N S C
Sbjct: 576 CNVCECHSGY-QLPLCQ--ECPGCPSPCGKYISCAEC-----LKFEKGPFGKNCSAACPG 627
Query: 71 M---NECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHS 114
+ N + C + + C Y LE + + + +
Sbjct: 628 LQLSNNPVKGRTCKERDS-------EGCWVAYTLEQQDGMDRYLIYV 667
Score = 30.5 bits (68), Expect = 1.5
Identities = 14/69 (20%), Positives = 18/69 (26%), Gaps = 6/69 (8%)
Query: 28 CDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNT 87
C + LC +C C G I N C+ + C
Sbjct: 425 CRCRDQSRDRSLCHGKGFLEC--GICRCDTGYIGKN----CECQTQGRSSQELEGSCRKD 478
Query: 88 KGSYICSCN 96
S ICS
Sbjct: 479 NNSIICSGL 487
>1cr8_A Protein (LOW density lipoprotein receptor related protein);
ligand binding, calcium binding, LDLR, LRP, lipid
binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 33.4 bits (77), Expect = 0.007
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
C+ L CDG TDC + +DE
Sbjct: 16 LCIPLRWRCDGDTDCMDSSDE 36
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 37.5 bits (86), Expect = 0.007
Identities = 16/140 (11%), Positives = 40/140 (28%), Gaps = 10/140 (7%)
Query: 157 DWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGEN 216
+Y + S + + G+ +D ++ D +
Sbjct: 213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD-HN--IYVGDLAHS 269
Query: 217 PRIERIGMDGSNRSTIIST-KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNY 275
I I +++ K+ W + + +YF ++L S + N
Sbjct: 270 -AIGVITSADRAYKLLVTDEKLSWTDSFNFG-SDGYLYFDCNQLH----HSAPLNAGENI 323
Query: 276 STIFRKLYWIDEGGNGVPLK 295
S ++ + G+ +
Sbjct: 324 SAPPYYIFRLKPLAAGIVGR 343
Score = 32.1 bits (72), Expect = 0.35
Identities = 37/280 (13%), Positives = 79/280 (28%), Gaps = 63/280 (22%)
Query: 189 DNITQPRGMMLDPSPGTRWLFWTDWGEN----PRIERIGMDGSNRSTIIS------TKIY 238
G+ D + G W+ D G P++ + S +I
Sbjct: 64 ITFDTVLGIKSDGN-GIVWM--LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNS 120
Query: 239 WPNGLTLDIATRRVYFADS---------KLDFIDCKSLEIKTN--------VNYSTIFRK 281
+ N L +D+ VY +D ++D + + ++
Sbjct: 121 FVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVP 180
Query: 282 LYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTR-WLFW 340
+ G + +G + LD EN LY S + T +
Sbjct: 181 VQIGQPDGTVIRPHLGVNGI-----------------VLDAENEWLYLSPMHSTSMYRIK 223
Query: 341 TDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGT 400
+ N ++ + + +G+++D +Y D I
Sbjct: 224 SADLSNLQLTDAELGSKIERYS---EKPICDGISID-KDHNIYVGDLAHSAIGVITSA-D 278
Query: 401 GRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYST 440
++++ D + +T+ +G LY+
Sbjct: 279 RAYKLLVTDEKLSWTDSFNFG----------SDGYLYFDC 308
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor,
cysteine-rich module, calcium; 1.70A {Homo sapiens}
SCOP: g.12.1.1
Length = 37
Score = 33.3 bits (77), Expect = 0.007
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
C++ + CDG DC + +DE
Sbjct: 13 ECIHSSWRCDGGPDCKDKSDE 33
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 37.1 bits (86), Expect = 0.009
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 33/109 (30%)
Query: 17 DCPNGADEGPGCDLAECKHKFGLCSN--TCHPTPLGALCTCPPG------EILSNDSV-- 66
+CP+G GP C+ A C C N C C CPPG + + +
Sbjct: 168 ECPDGF-HGPHCEKALC---TPRCMNGGLCVTP---GFCICPPGFYGVNCDKANCSTTCF 220
Query: 67 ---TCQDMNECE-QPGY---------CSQMCTNT---KGSYICSCNEGY 99
TC +C PG C Q C N G C C++GY
Sbjct: 221 NGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGY 269
Score = 34.1 bits (78), Expect = 0.074
Identities = 29/109 (26%), Positives = 33/109 (30%), Gaps = 33/109 (30%)
Query: 17 DCPNGADEGPGCDLAECKHKFGLCSN--TCHPTPLGALCTCPPG------EILSNDSV-- 66
CP G G CD A C C N TC C CPPG EI
Sbjct: 200 ICPPGF-YGVNCDKANCSTT---CFNGGTCFYPGK---CICPPGLEGEQCEISKCPQPCR 252
Query: 67 ---TCQDMNECE-QPGY---------CSQMCTNT---KGSYICSCNEGY 99
C ++C+ GY C C C C EG+
Sbjct: 253 NGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGW 301
Score = 34.1 bits (78), Expect = 0.075
Identities = 15/120 (12%), Positives = 24/120 (20%), Gaps = 33/120 (27%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPG----- 58
+ V C D G F + + L T
Sbjct: 95 TVPHKASVVQVGFPCLGKQD-GVAA--------FEVDVIVMNSEGNTILKTPQNAIFFKT 145
Query: 59 -EILSNDSV-----TCQDMNECE-QPGY----CSQMCTNTK--------GSYICSCNEGY 99
+ C + CE G+ C + + C C G+
Sbjct: 146 CQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGF 205
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 37.0 bits (85), Expect = 0.010
Identities = 43/324 (13%), Positives = 88/324 (27%), Gaps = 47/324 (14%)
Query: 110 AINHSAAFLIISNR-HSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDS 168
A+ ++I++N +++ V D+ D + V+ Y L++
Sbjct: 6 ALKAGHEYMIVTNYPNNLHVVDVA---SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 62
Query: 169 RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP-----SPGTRWLFWTDWGENPRIERIG 223
I D + T + + + P + SP + ++ T +
Sbjct: 63 HYGDIYGIDLD-TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121
Query: 224 MDGSNRSTIISTK----------IYWPNGLTLDIATR--RVYFADSKLDFIDCKSLEIKT 271
+ R + ST P + L A +Y A + +D K+ +
Sbjct: 122 VK-PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTV 180
Query: 272 NVNYSTIFR---------KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDL 322
+ R + + + A + LY L++DL
Sbjct: 181 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240
Query: 323 ENG-MLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIY----------WPN 371
+ G T F +P+ NR K
Sbjct: 241 KTGKTHTQEFADLTELYF--TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYY 298
Query: 372 GLTLDIATRRVYFA--DSKLDFID 393
+ D ++Y + L +
Sbjct: 299 CVAFDKKGDKLYLGGTFNDLAVFN 322
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 33.1 bits (76), Expect = 0.011
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 3 DRCVNLTKVCDGKTDCPNGADE 24
C+N CDG DC + +DE
Sbjct: 18 SSCINSRYRCDGVYDCRDNSDE 39
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 32.7 bits (75), Expect = 0.013
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKH 35
RC+ CDG DC + +DE P A C
Sbjct: 17 RCIQERWKCDGDNDCLDNSDEAP----ALCHQ 44
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 36.6 bits (84), Expect = 0.013
Identities = 20/104 (19%), Positives = 24/104 (23%), Gaps = 18/104 (17%)
Query: 12 CDGKTDCPNGADEGPGCDL-------AECKHKFGLCSN--TCHPTPLGALCTCPPG---- 58
+ A EC H C N CH C CPPG
Sbjct: 170 RYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDT--GECICPPGFMGR 227
Query: 59 ---EILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGY 99
+ + C C Y CSC G+
Sbjct: 228 TCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGW 271
Score = 29.3 bits (65), Expect = 3.2
Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 22/103 (21%)
Query: 12 CDGKTDCPNGADEGPGCDLAECKHKFGLCSN--TCHPTPLGALCTCPP---GEILSNDSV 66
C+ C G GP C L C C+N C C C P G + +
Sbjct: 276 CN--EACHPG-FYGPDCKL-RCS-----CNNGEMCDRFQG---CLCSPGWQGLQCEREGI 323
Query: 67 TCQDMNECEQPGYCSQMCTNTKGSYICSCN-EGYVLEYDNHTC 108
+ P + G + C G+ L +
Sbjct: 324 PRMTPKIVDLPDHIEVNS----GKFNPICKASGWPLPTNEEMT 362
Score = 28.9 bits (64), Expect = 3.6
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 12/86 (13%)
Query: 25 GPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGY----C 80
E + P G G L + T + C + C
Sbjct: 140 IHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRC-EAQKWGPEC 198
Query: 81 SQMCTN-------TKGSYICSCNEGY 99
+ +CT + + C C G+
Sbjct: 199 NHLCTACMNNGVCHEDTGECICPPGF 224
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 32.2 bits (74), Expect = 0.022
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
RC+ CD DC + +DE
Sbjct: 19 RCIPSVWRCDEDDDCLDHSDE 39
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 35.8 bits (82), Expect = 0.024
Identities = 20/97 (20%), Positives = 27/97 (27%), Gaps = 25/97 (25%)
Query: 12 CDGKTDCPNGADEGPGCDL---AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
C DC + C L A+C C C A C
Sbjct: 233 CGSPADCQSACCNATTCKLQHEAQCDS--EECCEKCKFKGARAEC--------------R 276
Query: 69 QDMNECEQPGYC---SQMC---TNTKGSYICSCNEGY 99
++C+ P C S C + C N+GY
Sbjct: 277 AAKDDCDLPELCTGQSAECPTDVFQRNGLPCQNNQGY 313
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand
binding, calcium binding, complement-like repeat, LRP
receptor, signaling protein; 1.85A {Homo sapiens} SCOP:
g.12.1.1
Length = 44
Score = 31.9 bits (73), Expect = 0.025
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHK 36
RC+ CDG DC + +DE A C ++
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDETH----ANCTNQ 44
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 35.5 bits (82), Expect = 0.026
Identities = 11/160 (6%), Positives = 38/160 (23%), Gaps = 23/160 (14%)
Query: 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-DNITQPRGMMLDPSPGTRWLFWT 211
A ++ + + V+A + + + + +P ++
Sbjct: 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDI--TPDDQFAVTV 101
Query: 212 DWGENP-RIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS----KLDFIDCKS 266
+P ++ + + I G+ + + D + +
Sbjct: 102 TGLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDA 160
Query: 267 LEIKTNVNYSTIF--------------RKLYWIDEGGNGV 292
+ + I + + GN +
Sbjct: 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSI 200
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 34.9 bits (80), Expect = 0.044
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 67 TCQDMNECEQPGY----CSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
D++EC++ C C N G Y CSC GY+L DN TC
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 35.2 bits (80), Expect = 0.045
Identities = 25/124 (20%), Positives = 34/124 (27%), Gaps = 18/124 (14%)
Query: 3 DRCVNLTKVCDG-KTDCPNGADEGPG-CDLAECKHKFGLCSN-----TCHPTPLGALC-- 53
+RC + T C + G C +EC + C L C
Sbjct: 180 ERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVE 239
Query: 54 TCPPGEILSNDSVTCQDMNECEQ-----PGYCSQMCTNTK---GSYICSCNEGYVLEYDN 105
TCPP C + + C+ Q C I C GY + N
Sbjct: 240 TCPPPYY-HFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSN 298
Query: 106 HTCK 109
C
Sbjct: 299 LLCT 302
Score = 31.4 bits (70), Expect = 0.74
Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 7 NLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSV 66
C + C + + C H++ + +N C P CP G +++ ++
Sbjct: 248 FQDWRCVNFSFCQDLHHKCKNSRRQGC-HQYVIHNNKCIPE-------CPSGYTMNSSNL 299
Query: 67 TCQ-------DMNECEQPGYCSQMCTNTKGSYICSCNEGYVL 101
C + + T+ + C+ G ++
Sbjct: 300 LCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLI 341
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 34.9 bits (79), Expect = 0.053
Identities = 24/209 (11%), Positives = 48/209 (22%), Gaps = 51/209 (24%)
Query: 96 NEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLA 155
E Y Y+ ++ F I N S + + Q ++ +
Sbjct: 259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV--KNNPNTFKQLFTIADPSWEFQIF 316
Query: 156 YDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT-------------------QPRG 196
G + Y+ + D + + + N P
Sbjct: 317 IHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376
Query: 197 MMLDPSPGTRW-----LFWTDWGENPRIERIGMDGSNRSTII------------------ 233
+ +P ++ D N + ++ +G ST
Sbjct: 377 GVFVKNPDYTGEEEYDFYFVDRL-NFCVRKVTPEG-IVSTYAGRGASTSLADGNQWGTDD 434
Query: 234 -----STKIYWPNGLTLDIATRRVYFADS 257
+ +GL D Y D
Sbjct: 435 GDLREVARFRDVSGLVYDDVKEMFYVHDQ 463
Score = 30.7 bits (68), Expect = 1.1
Identities = 40/325 (12%), Positives = 79/325 (24%), Gaps = 52/325 (16%)
Query: 86 NTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVV 145
+ K + S + + A N + I+ D + KG + + I+
Sbjct: 168 DLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIK 227
Query: 146 SGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGT 205
D G D + + N + NG + Q + L T
Sbjct: 228 RNAD---GTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKG--QVFRLDLVDYFKT 282
Query: 206 RWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCK 265
G + + + W + + + YF +
Sbjct: 283 IK-----NGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYF--- 334
Query: 266 SLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENG 325
++++ + + GG G + G+ A + Q D
Sbjct: 335 ---MRSDYDEIKKEFITPYNFVGGYKQS---GYRDDVGTEARMNNPCQGVFVKNPDYTGE 388
Query: 326 MLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII---------------------- 363
Y ++ D N + ++ +G ST
Sbjct: 389 EEY--------DFYFVDRL-NFCVRKVTPEG-IVSTYAGRGASTSLADGNQWGTDDGDLR 438
Query: 364 -STKIYWPNGLTLDIATRRVYFADS 387
+ +GL D Y D
Sbjct: 439 EVARFRDVSGLVYDDVKEMFYVHDQ 463
Score = 29.9 bits (66), Expect = 1.8
Identities = 25/211 (11%), Positives = 55/211 (26%), Gaps = 7/211 (3%)
Query: 191 ITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT-LDIAT 249
+ + DP + G + I+ I + S+ ++ N + +
Sbjct: 138 FSDNGRLAFDPLNKDHL-YICYDG-HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNK 195
Query: 250 RRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309
+ +AD I + K + + S K +G I
Sbjct: 196 KIEGYADEAEYMIVAIDYDGKGDESPSVYIIK--RNADGTFDDRSDIQLIAAYKQCNGAT 253
Query: 310 VSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 369
+ E E G ++ L +P ++ + + W
Sbjct: 254 IHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK--NNPNTFKQLFTIADPSW 311
Query: 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGT 400
+ + + YF + +YD
Sbjct: 312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl,
rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP
signaling protein; 2.01A {Mus musculus} PDB: 3me2_R
3qbq_B 3nzy_B
Length = 216
Score = 34.1 bits (77), Expect = 0.055
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 2/99 (2%)
Query: 16 TDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75
D N D+ + + + T C C G ++D C+ EC
Sbjct: 76 LDTWNEEDKCLLHKVCDAGKALVAVDP-GNHTA-PRRCACTAGYHWNSDCECCRRNTECA 133
Query: 76 QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHS 114
K + C G+ + + T K +
Sbjct: 134 PGFGAQHPLQLNKDTVCTPCLLGFFSDVFSSTDKCKPWT 172
Score = 29.8 bits (66), Expect = 1.5
Identities = 16/90 (17%), Positives = 21/90 (23%), Gaps = 11/90 (12%)
Query: 19 PNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPG 78
+ L + P C + C C +PG
Sbjct: 3 SSHHHHHHSSGLVPRGSHMHMQVTLQVTPP------CTQERHYEHLGRCCS---RC-EPG 52
Query: 79 -YCSQMCTNTKGSYICSCNEGYVLEYDNHT 107
Y S CT T S C L+ N
Sbjct: 53 KYLSSKCTPTSDSVCLPCGPDEYLDTWNEE 82
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 35.2 bits (80), Expect = 0.055
Identities = 17/105 (16%), Positives = 24/105 (22%), Gaps = 20/105 (19%)
Query: 18 CPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALC--TCPPGEILSNDSVTCQDMN--- 72
C G + P+G C PG S++C +
Sbjct: 1346 CELSVRAGHCKTPEQFPFASPTIPINDFEFPVGTSLNYECRPGYFGKMFSISCLENLVWS 1405
Query: 73 ---------ECEQPGYCSQMCTNTKGSY------ICSCNEGYVLE 102
C P + SCNEG+ L
Sbjct: 1406 SVEDNCRRKSCGPPPEPFNGMVHINTDTQFGSTVNYSCNEGFRLI 1450
Score = 32.5 bits (73), Expect = 0.41
Identities = 14/82 (17%), Positives = 19/82 (23%), Gaps = 20/82 (24%)
Query: 40 CSNTCHPTPLGALCT--CPPGEILSNDSVTCQDM------NECEQPGYCSQMCTNTKGSY 91
P+G C P S+TC D + + C G
Sbjct: 465 TQTNASDFPIGTSLKYECRPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMV 524
Query: 92 IC------------SCNEGYVL 101
SC G+ L
Sbjct: 525 HVITDIQVGSRINYSCTTGHRL 546
Score = 31.7 bits (71), Expect = 0.67
Identities = 19/111 (17%), Positives = 24/111 (21%), Gaps = 22/111 (19%)
Query: 13 DGKTDCPNGADEGPGCDLAECKHKFG--LCSNTCHPTPLGALCT--CPPGEILSNDSVTC 68
+G P G A F P+G C P S+TC
Sbjct: 886 NGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFPIGTSLKYECRPEYYGRPFSITC 945
Query: 69 QDMNE------CEQPGYCSQMCTNTKGSYIC------------SCNEGYVL 101
D + C G SC G+ L
Sbjct: 946 LDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQVGSRINYSCTTGHRL 996
Score = 30.2 bits (67), Expect = 2.1
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 11/120 (9%)
Query: 2 ADRCVNLTKVCDGKTDCPNGADEGPGCDLA-ECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
C + +G N G + +C CT ++
Sbjct: 1475 IISCEPPPTISNGDFYSNNRTSFHNGTVVTYQCHTGPDGEQLFELVGERSIYCTSKDDQV 1534
Query: 61 L--SNDSVTCQDMNECEQPGY-CSQMCTNTKGSY------ICSCNEGYVLEYDNH-TCKA 110
S+ C N+C P + + + C G+V+ + C+
Sbjct: 1535 GVWSSPPPRCISTNKCTAPEVENAIRVPGNRSFFSLTEIIRFRCQPGFVMVGSHTVQCQT 1594
Score = 29.0 bits (64), Expect = 3.9
Identities = 16/94 (17%), Positives = 22/94 (23%), Gaps = 23/94 (24%)
Query: 38 GLCSNTCHPTPLGALCT--CPPGEILS-NDSVTCQ-------DMNECEQPGYCSQMCTNT 87
G C PG L S+ C CE M
Sbjct: 716 ERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSPAAPTCEVKSCDDFMGQLL 775
Query: 88 KGSYIC------------SCNEGYVLEYDNH-TC 108
G + C+EG+ L+ + C
Sbjct: 776 NGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASYC 809
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 33.5 bits (76), Expect = 0.061
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 16 TDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75
T N C + S+ C +C C + S C
Sbjct: 51 TASENHLRHCLSCSKCRKEMGQVEISS-CTVDR-DTVCGCRKNQYRHYWSENLFQCFNCS 108
Query: 76 Q--PGYCSQMCTNTKGSYICSCNEGY 99
G C + + +C+C+ G+
Sbjct: 109 LCLNGTVHLSCQEKQNT-VCTCHAGF 133
Score = 33.1 bits (75), Expect = 0.089
Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 16 TDCPNGADEGPGCDLAECKHKFGLC------SNTCHPTPLGALCT-CPPGEILS--NDSV 66
+ CP G P + C C N C C C G + N
Sbjct: 3 SVCPQGKYIHPQNNSICCT----KCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLR 58
Query: 67 TCQDMNECEQPG--YCSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109
C ++C + CT + + +C C + Y +
Sbjct: 59 HCLSCSKCRKEMGQVEISSCTVDRDT-VCGCRKNQYRHYWSENLF 102
Score = 28.1 bits (62), Expect = 4.1
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 20/74 (27%)
Query: 12 CDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDM 71
C + C G C+ K NT CTC G L + C
Sbjct: 104 CFNCSLCL------NGTVHLSCQEK----QNTV--------CTCHAGFFLREN--ECVSC 143
Query: 72 NECEQPGYCSQMCT 85
+ C++ C+++C
Sbjct: 144 SNCKKSLECTKLCL 157
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 33.8 bits (77), Expect = 0.10
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 65 SVTCQDMNECEQPGY----CSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109
D++EC++ C C N G Y CSC GY+L DN TC+
Sbjct: 115 HYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCR 163
Score = 31.1 bits (70), Expect = 0.83
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 74 CEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
SQ K + SC+ GY + DN
Sbjct: 289 VHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEM 323
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 34.1 bits (77), Expect = 0.10
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 21/102 (20%)
Query: 16 TDCPNG-ADEGPGCDLAECKH---------KFGLCSNTCHPTPLGALCTCPPGEILSNDS 65
+ C EG D +C H L + C P P + ++
Sbjct: 391 SQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQATHCLPEPH----LLRLRALGFSEE 446
Query: 66 VTCQDMN----ECEQPGYCSQMCTNTKGSY---ICSCNEGYV 100
+ + C + C++ +G +CSC G +
Sbjct: 447 LIVELHTLCDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRL 488
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural
genomics, midwest center for structu genomics,
TOLB-like, Ca binding; 2.55A {Escherichia coli}
Length = 255
Score = 33.1 bits (75), Expect = 0.15
Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 12/120 (10%)
Query: 97 EGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAY 156
EG +HT + + +L + + + G +
Sbjct: 124 EGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV---SGAEF 180
Query: 157 DWIGGHIYWLDSRLNRIEVCDENGTNRIVLA--------KDNITQPRGMMLDPSPGTRWL 208
+ + L ++ G ++ NI Q G+ +D S G ++
Sbjct: 181 NQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS-GNIYI 239
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 32.0 bits (73), Expect = 0.16
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 40 CSN--TCHPTPLGAL-------CTCPPGEILSNDSVTCQ-DMNECEQPGYCSQ--MCTNT 87
C N TC + C CP G + + CQ ++NECE C +CT+
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGF----NGIHCQHNINECE-VEPCKNGGICTDL 114
Query: 88 KGSYICSCNEGY 99
+Y C C +
Sbjct: 115 VANYSCECPGEF 126
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 33.5 bits (76), Expect = 0.17
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 5/90 (5%)
Query: 12 CDGKTDCPNGADEGPGCDLAECK----HKFGLCSNTCHPTPLGALCTCPPGEILSNDSVT 67
C+ E D C+ G + G+ V
Sbjct: 357 CEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVE 416
Query: 68 CQDMNECEQPGYCSQMCTNTKGSYICSCNE 97
+ + C + G+ + G C+CN
Sbjct: 417 GERCDVC-KEGFYDLSAEDPYGCKSCACNP 445
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 33.3 bits (75), Expect = 0.18
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 17 DCPNGADEGPGCDLAECKHKFGL--CSN-TCHPTPLGALCTCPPGEILSNDSVTCQDMNE 73
+C + GP C +CK + S + P P GA C P +V ++
Sbjct: 316 ECEHNT-TGPDCG--KCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLH 372
Query: 74 CEQPGYCSQMCTNTKGSYICSCNEGY 99
C+ G C + C C Y
Sbjct: 373 CQNGGTCH-------NNVRCLCPAAY 391
>1ccv_A AMCI, chymotrypsin inhibitor; protein inhibitor, hemolymph,
canonical inhibitor, hydrolase inhibitor; NMR {Apis
mellifera} SCOP: g.22.1.1
Length = 56
Score = 29.7 bits (67), Expect = 0.21
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 55 CPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNH 106
C P E+ + C + C+ C C C EG++ +
Sbjct: 3 CGPNEVFNTCGSACAPTCAQPKTRICTMQCRIG-----CQCQEGFLRNGEGA 49
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 32.7 bits (74), Expect = 0.26
Identities = 12/98 (12%), Positives = 22/98 (22%), Gaps = 18/98 (18%)
Query: 17 DCPNGADEGPGCDLAECKHKFG--------LCSNTCHPTPLGALCT----------CPPG 58
+ G + + C + +C P G C
Sbjct: 237 NLTFGPEYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGKCVDKT 296
Query: 59 EILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCN 96
+ + + + G CS+ C CN
Sbjct: 297 KKKYYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYRHCN 334
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold,
WHEY acidic protein fold, fibronectin type III fold,
hormone- growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 33.0 bits (74), Expect = 0.26
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 35 HKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNT--KGSYI 92
+ + H G+L C + S C++ + C C K SY
Sbjct: 34 QITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLR-KHQCQSFCEPLFPKKSYE 92
Query: 93 CSCN 96
C +
Sbjct: 93 CLTS 96
Score = 28.4 bits (62), Expect = 6.1
Identities = 19/105 (18%), Positives = 27/105 (25%), Gaps = 32/105 (30%)
Query: 3 DRCVNLTKVCDGKTDCPNG----------ADEGPGCDLAECK-------HKFGLCSNTCH 45
+C + C D + C L C+ K G C
Sbjct: 58 KQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYEC-LTSCEFLKYILLVKQGDCPAPEK 116
Query: 46 PTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGS 90
+ A C +C+ NEC C C+N G
Sbjct: 117 ASGFAAACV-----------ESCEVDNECSGVKKC---CSNGCGH 147
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 31.5 bits (71), Expect = 0.27
Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 11/97 (11%)
Query: 12 CDGKTDCPNGADEGPGCDLAECKHKFGLCSNT---CHPTPLGALCTCPPGEILSNDSVTC 68
C C + A G C +C ++G C C G C C
Sbjct: 40 CWTSKRCGSQAG-GATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLC 98
Query: 69 QDMNECEQPG-------YCSQMCTNTKGSYICSCNEG 98
+ C Q G +C C + S C +
Sbjct: 99 PNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKD 135
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 32.3 bits (72), Expect = 0.33
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 8/87 (9%)
Query: 10 KVCDGK-TDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
+C G D + + A+C F C T +C D +
Sbjct: 42 TICSGDIWDQASCSSSTTCVRQAQCGQDFQ-CKETGRCLKRHLVCNGD------QDCLDG 94
Query: 69 QDMNECEQPGYCSQMCTNTKGSYICSC 95
D ++CE + C+ +
Sbjct: 95 SDEDDCEDVRAIDEDCSQYEPIPGSQK 121
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 32.4 bits (73), Expect = 0.33
Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 21/102 (20%)
Query: 28 CDLAECKHKFGLCSNTCHPT-PLGALCT--CPPGEILS-NDSVTCQDMNECEQPGYCSQM 83
+ +H S + + G + C G +S + TC P
Sbjct: 853 SQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWSSPPQCEGLP 912
Query: 84 C-----------TNTKGSY------ICSCNEGYVLEYDNHTC 108
C + SY C EG+ ++
Sbjct: 913 CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAK 954
Score = 31.3 bits (70), Expect = 0.97
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 20/95 (21%)
Query: 26 PGCDLAECKHKFGLCSNTCHPTPLGALCT--CPPGEILS-NDSVTCQD-----MNECE-- 75
D+ E +H G + P G C + + S+TC + +C
Sbjct: 672 TCGDIPELEH--GWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHGVWTQLPQCVAI 729
Query: 76 --------QPGYCSQMCTNTKGSYICSCNEGYVLE 102
+ K + + N Y
Sbjct: 730 DKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCR 764
Score = 30.9 bits (69), Expect = 1.1
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 26/115 (22%)
Query: 20 NGADEGPGCDLAECKH----KFGLCSNTCHPTPLGALCT--CPPGEILSNDSVTCQDMNE 73
P C+ CK G+ ++ G T C G + ++ +
Sbjct: 900 GKWSSPPQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEK 959
Query: 74 CEQPGYC-------------SQMCTNTKGSY------ICSCNEGYVLEYDNH-TC 108
P C + K Y +C Y ++ ++ TC
Sbjct: 960 WSHPPSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTC 1014
Score = 29.3 bits (65), Expect = 3.2
Identities = 9/76 (11%), Positives = 19/76 (25%), Gaps = 20/76 (26%)
Query: 53 CTCPPGEILS-NDSVTCQDMNECEQPGYCSQMCT-------------NTKGSYI------ 92
C P ++ + + C D P + T + Y
Sbjct: 639 YYCNPRFLMKGPNKIQCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVE 698
Query: 93 CSCNEGYVLEYDNHTC 108
+C+E + +
Sbjct: 699 FNCSESFTMIGHRSIT 714
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 30.9 bits (70), Expect = 0.40
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 68 CQDMNECEQPGYCSQMCTNTKGSYICSCNEGY 99
C C T +Y C C+ G+
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGF 148
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 31.6 bits (71), Expect = 0.46
Identities = 16/143 (11%), Positives = 42/143 (29%), Gaps = 18/143 (12%)
Query: 306 ASILVSGQLY--EALALDLENGMLYYSTL--KCTRWLF----WTDWGENPRIERIGMDGS 357
IL+ Y + D N Y S + ++ + D+ +
Sbjct: 10 KEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCEN 69
Query: 358 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLM-VEFTN 416
+ ++ ++ ++Y D + G Q +D + ++
Sbjct: 70 STDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLY 129
Query: 417 DLMGDNGVPALALDLENGMLYYS 439
+ +D G++Y++
Sbjct: 130 A---------VTVDQRTGIVYFT 143
Score = 30.0 bits (67), Expect = 1.7
Identities = 14/129 (10%), Positives = 35/129 (27%), Gaps = 28/129 (21%)
Query: 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQ------------------ 193
+D Y + R+ + + + A +
Sbjct: 22 NSFTFDSTNKGFY-TSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCG 80
Query: 194 -PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS----TKIYWPNGLTLDIA 248
+ + ++ + + +G +G + + + + W +T+D
Sbjct: 81 RTYDISYNLQNNQLYIVDCYYH----LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR 136
Query: 249 TRRVYFADS 257
T VYF D
Sbjct: 137 TGIVYFTDV 145
Score = 29.7 bits (66), Expect = 1.9
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 24/132 (18%)
Query: 318 LALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 377
++ +L+N LY + ++ G ++ +++ W +T+D
Sbjct: 85 ISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA---------TSVDGVPFKWLYAVTVDQ 135
Query: 378 ATRRVYFADSKLDF------IDFCNYDGTGRQQVILIDL----MVEFTNDLMGDNGVPAL 427
T VYF D + D TGR +I D +L G
Sbjct: 136 RTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR--LIKYDPSTKETTLLLKELHVPGGA--- 190
Query: 428 ALDLENGMLYYS 439
+ ++ + +
Sbjct: 191 EVSADSSFVLVA 202
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 31.7 bits (71), Expect = 0.51
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 18 CPNGADE-GPGCDL---AECKHKFGLCSNTCHPTPLGALCT----CPPGEILSNDSVTCQ 69
C NG E G CD AEC + C C T + C+ C + +V +
Sbjct: 215 CGNGFIETGEECDCGTPAECVLEGAECCKKCTLTQ-DSQCSDGLCCKKCKFQPMGTVCRE 273
Query: 70 DMNECEQPGYC---SQMC---TNTKGSYICSCNEGY 99
+N+C+ C S C + Y C +G
Sbjct: 274 AVNDCDIRETCSGNSSQCAPNIHKMDGYSCDGVQGI 309
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 31.2 bits (71), Expect = 0.59
Identities = 38/241 (15%), Positives = 67/241 (27%), Gaps = 43/241 (17%)
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPS 202
+ G EG Y + + D R NR ++G + + G L+
Sbjct: 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSH--HQNGHCLNKQ 79
Query: 203 PGTRWLFWTDWGENPRIERIGMDGSNRSTIIST----KIYWPNGLTLDIATRRVYFADSK 258
L G R+ER G +I + K+ PN + L ++F+D
Sbjct: 80 ---GHLIACSHGLR-RLERQREPGGEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPT 134
Query: 259 LDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEAL 318
+ R ++ + G L + N L
Sbjct: 135 YGIDKPEEGYGGEMELP---GRWVFRLAPDGT---LSAPIRDRVKPN-----------GL 177
Query: 319 ALDLENGMLYYS-TLKCTRWLFWTDWGENPRIERIGMDG--SNRSTIISTKIYWPNGLTL 375
A +G L S T + + G + + + +GL +
Sbjct: 178 AFL-PSGNLLVSDTGDNATHRY-----------CLNARGETEYQGVHFTVEPGKTDGLRV 225
Query: 376 D 376
D
Sbjct: 226 D 226
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth
factor, NGF, neurotrophin, common neurotrophin receptor;
2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1
g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Length = 161
Score = 30.5 bits (68), Expect = 0.65
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 16 TDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75
+D + + C EC + + C A+C C G ++ C+ + CE
Sbjct: 46 SDVVSATEPCKPCT--ECLGLQSMSAP-CVEAD-DAVCRCAYGYYQDEETGHCEACSVCE 101
Query: 76 QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHT 107
C + + + C EG + NH
Sbjct: 102 VGSGLVFSCQDKQNTVCEECPEGTYSDEANHV 133
Score = 28.6 bits (63), Expect = 3.0
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 7/85 (8%)
Query: 9 TKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN---TCHPTPLGALCT-CPPGEIL--S 62
+ D C G + E + S +C +C CP G +
Sbjct: 72 VEADDAVCRCAYGYYQDEETGHCEACSVCEVGSGLVFSCQDKQ-NTVCEECPEGTYSDEA 130
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNT 87
N C CE + CT
Sbjct: 131 NHVDPCLPCTVCEDTERQLRECTPW 155
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.99
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 402 RQQVILIDLMVEFTNDLMGDNGVPALALD--LE 432
+Q + ++ + L D+ PALA+ +E
Sbjct: 19 KQAL----KKLQASLKLYADDSAPALAIKATME 47
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Length = 508
Score = 30.7 bits (70), Expect = 1.00
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 139 RAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIE 174
+ I S + EG Y + D L +
Sbjct: 288 KPAKIAFSAQGVREGYLYSLLTEAERESDPLLVAAD 323
>2xrb_A Complement regulatory protein CRRY; immune system, immunology;
2.50A {Rattus norvegicus} PDB: 2xrd_A
Length = 290
Score = 30.4 bits (68), Expect = 1.2
Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 35 HKFGLCSNTCHPTPLGALCT--CPPGEILSNDSVTCQDMNE------------CEQP--- 77
+ + P+G C PG I S+TC+ + CE P
Sbjct: 46 YAKPINPTDESTFPVGTSLKYECRPGYIKRQFSITCEVNSVWTSPQDVCIRKQCETPLDP 105
Query: 78 --GYCSQMCTNTKGSYI-CSCNEGYVLEYDNH-TC 108
G GS I +CNEGY L + C
Sbjct: 106 QNGIVHVNTDIRFGSSITYTCNEGYRLIGSSSAMC 140
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 29.4 bits (66), Expect = 1.3
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 68 CQDMNECEQPGYCSQMCTNTKGSYICSCNEGY 99
C + C +Y C+C+ GY
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGY 148
>1hx2_A BSTI; beta-sheet disulfide-rich, hydrolase inhibitor; NMR {Bombina
bombina} SCOP: g.22.1.2
Length = 60
Score = 27.6 bits (61), Expect = 1.5
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 8/35 (22%)
Query: 67 TCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVL 101
TC+ N+ C + C C C G VL
Sbjct: 20 TCETRNK---LVLCDKKCNQR-----CGCISGTVL 46
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP:
g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R
1d4v_A
Length = 130
Score = 28.9 bits (64), Expect = 1.6
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 22/77 (28%)
Query: 44 CHPTPLGALCT--CPPGEILS-------------------NDSVTCQDMNECEQPGYCSQ 82
+ CPPG +S ND + C C+
Sbjct: 15 APQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELS 74
Query: 83 MCTNTKGSYICSCNEGY 99
CT T+ + +C C EG
Sbjct: 75 PCTTTRNT-VCQCEEGT 90
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 29.6 bits (66), Expect = 1.7
Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 22/111 (19%)
Query: 11 VCDGKTDCPNGA------DEGPGCDLAECKHKFGLCSNTCHPTPLGALC----TCPPGEI 60
+C GK G G C+ +C +C C G+
Sbjct: 97 LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQC 156
Query: 61 LSNDSVTCQD--------MNECEQPGYCSQMCTNTKG----SYICSCNEGY 99
L + S + Y Q+C C C+ G+
Sbjct: 157 LCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGF 207
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 29.8 bits (66), Expect = 1.7
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 32/117 (27%)
Query: 6 VNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN---TCHPTPLGALCTCPPGEILS 62
V + C+ C + + + C H G C +G C C S
Sbjct: 178 VQVLPQCE--CRCRDQSRDRSLC------HGKGFLECGICRCDTGYIGKNCECQTQGRSS 229
Query: 63 ND-SVTCQDMNE---CEQPGYCSQMCTNTKGSYICSCNEGYVL---------EYDNH 106
+ +C+ N C G C C C C+ V E+ +H
Sbjct: 230 QELEGSCRKDNNSIICSGLGDCV--CGQ------CLCHTSDVPGKLIYGQYCEHHHH 278
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor
complex, cytokine, cytokine-cytokine recepto; 3.00A
{Homo sapiens}
Length = 173
Score = 29.4 bits (65), Expect = 1.8
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 53 CTCPPGEILSNDSVTCQDMNECEQPG-YCSQMCTNTKGSYICSCNEGYVLEYDNH 106
TC E + C C PG + CT T + SC + + N
Sbjct: 6 STCRLREYYDQTAQMCCSK--C-SPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNW 57
Score = 29.0 bits (64), Expect = 2.2
Identities = 14/84 (16%), Positives = 19/84 (22%), Gaps = 13/84 (15%)
Query: 38 GLCSNTCHP-TPLGALCT---------CPPGEILS--NDSVTCQD-MNECEQPGYCSQMC 84
+C + C P CT C N C + C +Q C
Sbjct: 19 QMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQAC 78
Query: 85 TNTKGSYICSCNEGYVLEYDNHTC 108
T + Y C
Sbjct: 79 TREQNRICTCRPGWYCALSKQEGC 102
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor
immunomodulator, TNF alpha receptor; 2.0A {Vaccinia
virus}
Length = 142
Score = 28.9 bits (64), Expect = 1.9
Identities = 21/108 (19%), Positives = 31/108 (28%), Gaps = 18/108 (16%)
Query: 8 LTKVCDGKTD-----CPNG-----ADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPP 57
CD +D CP+ + P C T +C C
Sbjct: 26 SDHRCDKYSDTICGHCPSDTFTSIYNRSPWCHSCRGPCGTNRVEVTPCTPTTNRICHCDS 85
Query: 58 G-----EILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICS-CNEGY 99
+ + VTC +C GY + G+ IC C +G
Sbjct: 86 NSYCLLKASDGNCVTCAPKTKC-GRGYGKKGEDEM-GNTICKKCRKGT 131
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 30.0 bits (67), Expect = 2.0
Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 19/116 (16%)
Query: 12 CDGKTDCPNGADEGPGCDL---AECKHKFGLCSNTCHPTPLGALC-----TCPPGEILSN 63
C C + + C L A+C GLC + C G C C ++ +
Sbjct: 236 CGSPRTCRDPCCDATTCKLRQGAQCAE--GLCCDQCRFKGAGTECRAAKDECDMADVCTG 293
Query: 64 DSVTC-----QDMNECEQP-GYC-SQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
S C ++ C+ GYC + C + C G C N
Sbjct: 294 RSAECTDRFQRNGQPCKNNNGYCYNGKCPI--MADQCIALFGPGATVSQDACFQFN 347
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 29.9 bits (66), Expect = 2.2
Identities = 18/81 (22%), Positives = 23/81 (28%), Gaps = 6/81 (7%)
Query: 34 KHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQ--PGYCSQMCTNTKGSY 91
K C + C T G CP I C + C++ P C +G
Sbjct: 149 KDDNEECGDICPGTAKGK-TNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGL- 206
Query: 92 IC--SCNEGYVLEYDNHTCKA 110
C C D C A
Sbjct: 207 CCHSECLGNCSQPDDPTKCVA 227
Score = 28.3 bits (62), Expect = 6.2
Identities = 27/119 (22%), Positives = 36/119 (30%), Gaps = 27/119 (22%)
Query: 3 DRCVNLTK---VCDGKTDCPNGADEGPGCDLAECKHKFGLCSN--------TCHPTPLGA 51
+RC + VC EG C +EC G CS C L
Sbjct: 180 ERCWTHSHCQKVCPTICKSHGCTAEGLCCH-SEC---LGNCSQPDDPTKCVACRNFYLDG 235
Query: 52 LC--TCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
C TCPP D C +C + K S C++ + N+ C
Sbjct: 236 RCVETCPPPYYHFQD-------WRCVNFSFCQDLHHKCKNSRRQGCHQYVI---HNNKC 284
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9
PDB: 1xpw_A
Length = 153
Score = 28.6 bits (63), Expect = 2.3
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLA-KDNITQPRGMMLDPSPGTRWL--------FWT 211
GH + S + +I++C + + ++LA + P ++D +P T W F
Sbjct: 2 GHHHHHHSHMRKIDLCLSSEGSEVILATSSDEKHPPENIIDGNPETFWTTTGMFPQEFII 61
Query: 212 DWGENPRIERIGMDGSN 228
+ ++ RIER+ +
Sbjct: 62 CFHKHVRIERLVIQSYF 78
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 29.8 bits (66), Expect = 2.3
Identities = 15/107 (14%), Positives = 24/107 (22%), Gaps = 19/107 (17%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
C G P+ C + + C P CPP
Sbjct: 197 NNECCHPECLGSCSAPDNDTACVAC-------RHYYYAGVCVPA-------CPPNTY-RF 241
Query: 64 DSVTCQDMNECEQPGYCSQMCTN----TKGSYICSCNEGYVLEYDNH 106
+ C D + C + G + C G++
Sbjct: 242 EGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQS 288
>2jmv_A Scytovirin; protein, sugar binding protein, antiviral protein;
NMR {Scytonema varium} PDB: 2qsk_A 2qt4_A
Length = 95
Score = 27.9 bits (61), Expect = 2.6
Identities = 17/70 (24%), Positives = 20/70 (28%), Gaps = 8/70 (11%)
Query: 19 PNGADEGPGCDLAECKHKFGLCSNTCHPT---PLGAL-----CTCPPGEILSNDSVTCQD 70
PN CD A G C T P G P G ++S C
Sbjct: 17 PNRCSNNKQCDGARTCSSSGFCQGTSRKPDPGPKGPTYCWDEAKNPGGPNRCSNSKQCDG 76
Query: 71 MNECEQPGYC 80
C G+C
Sbjct: 77 ARTCSSSGFC 86
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 27.1 bits (59), Expect = 2.6
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 83 MCTNTKGSYICSCNEGYVLEYD---NHTC 108
C T YIC CN+GY + D N TC
Sbjct: 26 TCKETNSGYICRCNQGYRISLDGTGNVTC 54
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 29.2 bits (66), Expect = 2.7
Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 47/201 (23%)
Query: 136 KDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCD-ENGTNR----------I 184
+ + + + L EG +D G +W + + +G +
Sbjct: 36 FPFAGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSAL 95
Query: 185 VLAKDN---ITQPRGM-MLDPSPGTRWLFWTDWGENP-------RIERIG------MD-- 225
D+ I G+ + D + G L + P R+ G M
Sbjct: 96 AKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK 155
Query: 226 -----GS------NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN-- 272
GS + T + I PN + YF D+K++ + L+ +T
Sbjct: 156 AETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP 215
Query: 273 VNYSTIFRKLYWIDEGGNGVP 293
+ +F G G
Sbjct: 216 TGKAEVFIDS----TGIKGGM 232
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 29.3 bits (66), Expect = 2.8
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 351 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDL 410
+ D + II I NG+ L + ++ ++ + + + G I
Sbjct: 166 YVSPDFRTVTPIIQN-ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV----TIQP 220
Query: 411 MVEFTNDLMGDNGVP-ALALDLENGMLY 437
+ P + +D + LY
Sbjct: 221 FGATIPYYFTGHEGPDSCCID-SDDNLY 247
>2ao7_A ADAM 10; extracellular, protease, disintegrin, hydrolase; 2.90A
{Bos taurus}
Length = 192
Score = 28.5 bits (63), Expect = 3.2
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 25/98 (25%)
Query: 12 CDGKTDCPNGADEGPGCDL---AECKHKFGL-CSNTCHPTPLGALCTCPPGEILSNDSVT 67
C + EG C L +C G C+ C
Sbjct: 25 CKDECCYDANQPEGKKCKLKPGKQCSPSQGPCCTAHCAFKSKT---------------EK 69
Query: 68 CQDMNECEQPGYC---SQMC---TNTKGSYICSCNEGY 99
C+D ++C + G C + +C C+ +
Sbjct: 70 CRDDSDCAKEGICNGITALCPASDPKPNFTDCNRHTQV 107
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 27.4 bits (61), Expect = 3.2
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 11/64 (17%)
Query: 41 SNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQP-----GYCSQMCTNTKGSYICSC 95
+ C C G + C +P G C Q ++C C
Sbjct: 22 LRPVLRSNRVEYCWCNSGR----AQCHSVPVKSCSEPRCFNGGTCQQA--LYFSDFVCQC 75
Query: 96 NEGY 99
EG+
Sbjct: 76 PEGF 79
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 29.4 bits (65), Expect = 3.3
Identities = 23/127 (18%), Positives = 33/127 (25%), Gaps = 33/127 (25%)
Query: 5 CVNLTKVCDGKTDCP-------NGADEGPGCDLAECKHKFGLCSN-------------TC 44
CV L V CP + + G D G C + C
Sbjct: 193 CVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHC 252
Query: 45 HPT-----PLGALCTCPPGEILSNDSVTCQDMNECEQPGYCS-------QMCTNTKGSYI 92
P+G C C G D+ + S + +G+
Sbjct: 253 AVDGEWLVPIGQ-CLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATS 311
Query: 93 CSCNEGY 99
C C EG+
Sbjct: 312 CECEEGF 318
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 25.9 bits (58), Expect = 3.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 70 DMNECE-QPGYCSQ--MCTNTKGSYICSCNEGY 99
D ++CE P C C + SY C C G+
Sbjct: 2 DGDQCESNP--CLNGGSCKDDINSYECWCPFGF 32
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Length = 315
Score = 29.1 bits (66), Expect = 3.3
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 125 SILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGG 161
++ L+ + I VS L EG+ Y + G
Sbjct: 278 CLIEHVLKLVSTNA----ITVSTYSLKEGVLYTMLDG 310
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 28.8 bits (65), Expect = 3.4
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 351 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398
+ D ++ NGL + + Y+ DS +D +YD
Sbjct: 134 SLFPDHH--VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179
Score = 27.6 bits (62), Expect = 9.2
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFR 280
+ D ++ NGL + + Y+ DS +D +++T I
Sbjct: 134 SLFPDHH--VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG----QISN 187
Query: 281 KLYWID-EGGNGVP 293
+ E +P
Sbjct: 188 RRSVYKLEKEEQIP 201
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 29.4 bits (65), Expect = 3.6
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 42 NTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQ--MCTNTKGSYICSC-NEG 98
+ P+ + E ++ + + E + G C +C+ +C C G
Sbjct: 160 QSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTG 219
Query: 99 YVLEYDNHTCKAINHSAAF 117
+ + + + A F
Sbjct: 220 FRGKD--CSQGKEEYIATF 236
Score = 28.3 bits (62), Expect = 7.5
Identities = 8/81 (9%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN--TCHPTPLGALCTCPPG 58
+ + ++ ++ + G + A+ C N C +C C
Sbjct: 591 IDGQSKDIRQM--AEVQSTAGVKPSCSRETAKPCLS-NPCKNNGMCRDGWNRYVCDCSGT 647
Query: 59 EILSNDSVTCQDMNECEQPGY 79
L + + +
Sbjct: 648 GYLGRSCEREATVLSYDGSMF 668
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 29.0 bits (65), Expect = 3.9
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 13/68 (19%)
Query: 55 CPPGEILSNDSVTCQDMN--------ECEQPGYCSQMCTNTKGSYICSCN---EGYVLEY 103
C E + N V + CE+P Y M G Y C+ N VL
Sbjct: 4 CGIPESIENGKVEDPESTLFGSVIRYTCEEPYYY--MENGGGGEYHCAGNGSWVNEVLGP 61
Query: 104 DNHTCKAI 111
+ C +
Sbjct: 62 ELPKCVPV 69
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 28.9 bits (64), Expect = 3.9
Identities = 15/89 (16%), Positives = 21/89 (23%), Gaps = 18/89 (20%)
Query: 38 GLCSNTCHPTPLGALCT--CPPG-EILSNDSVTCQDMNE------------CEQPG---Y 79
G C PG ++ +S+ C CE G
Sbjct: 400 QKEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPPVPQCKVAACEATGRQLL 459
Query: 80 CSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
+ SC EGY L +
Sbjct: 460 TKPQHQFVRPDVNSSCGEGYKLSGSVYQE 488
Score = 27.8 bits (61), Expect = 9.0
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 54 TCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYI-CSCNEGYVLEYDN 105
C + C+ ++ ++ + SC +GY L
Sbjct: 623 RCKADNTWDPEIPVCEKETCQHVRQSLQELPAGSRVELVNTSCQDGYQLTGHA 675
>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1
Length = 128
Score = 27.9 bits (62), Expect = 4.1
Identities = 16/83 (19%), Positives = 21/83 (25%), Gaps = 22/83 (26%)
Query: 40 CSNTCHPTPLGALCT--CPPGEILSNDSVTCQD-------MNECEQPGYCSQMCTNTKGS 90
T P+G C P S+TC D + C + C G
Sbjct: 19 TQTTASDFPIGTSLKYECRPEYYGRPFSITCLDNLVWSSPKDVC-KRKSCKTPPDPVNGM 77
Query: 91 YIC------------SCNEGYVL 101
SC G+ L
Sbjct: 78 VHVITDIQVGSRITYSCTTGHRL 100
>1ntj_A Complement receptor related protein; immunology, glycoprotein, SCR,
CCP, immune system; NMR {Rattus norvegicus}
Length = 320
Score = 28.4 bits (63), Expect = 4.3
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 20/87 (22%)
Query: 39 LCSNTCHPTPLGALCT--CPPGEILSNDSVTCQDMNE------------CEQP-----GY 79
+ P+G C PG I S+TC+ + CE P G
Sbjct: 17 INPTDESTFPVGTSLKYECRPGYIKRQFSITCEVNSVWTSPQDVCIRKQCETPLDPQNGI 76
Query: 80 CSQMCTNTKGSYIC-SCNEGYVLEYDN 105
GS I +CNEGY L +
Sbjct: 77 VHVNTDIRFGSSITYTCNEGYRLIGSS 103
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 28.4 bits (62), Expect = 4.5
Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 12/117 (10%)
Query: 8 LTKVCDGKTD-----CPNG-----ADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPP 57
+++ C + CP G + C + + CTCPP
Sbjct: 35 VSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPP 94
Query: 58 GEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHS 114
G SN TC C + T T+ C G + + K ++
Sbjct: 95 GMFQSNA--TCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYT 149
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 28.4 bits (63), Expect = 4.9
Identities = 14/97 (14%), Positives = 23/97 (23%), Gaps = 23/97 (23%)
Query: 9 TKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
+C E C + + TC C
Sbjct: 212 PPICGNYFVEVG---EECDCGSPQACQSACCNAATCQFKGAETEC--------------R 254
Query: 69 QDMNECEQPGYC---SQMCTN---TKGSYICSCNEGY 99
++C+ P C S C + + C N+ Y
Sbjct: 255 VAKDDCDLPELCTGQSAECPTDSLQRNGHPCQNNQSY 291
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich
domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo
sapiens}
Length = 171
Score = 27.9 bits (61), Expect = 4.9
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 38 GLCSNTCHP-TPLGALCT---------CPPGEILS--NDSVTCQD-MNECEQPGYCSQMC 84
L + C P T L CT CP + S C C++ Y Q C
Sbjct: 17 QLLCDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQEC 76
Query: 85 TNTKGSYICSCNEGY 99
T +C C EG
Sbjct: 77 NRTHNR-VCECKEGR 90
Score = 27.5 bits (60), Expect = 6.0
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 9/105 (8%)
Query: 16 TDCPNGADEGPGCDLAECKHKFGLCSN------TCHPTPLGALCTCPPGEILSNDSVTCQ 69
CP+ EC + +C C+ T +C C G L + C
Sbjct: 42 APCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRT-HNRVCECKEGRYLEIE--FCL 98
Query: 70 DMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHS 114
C Q T + + C +G+ + H+
Sbjct: 99 KHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHT 143
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 27.8 bits (61), Expect = 5.1
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 51 ALCTCPPGEILSNDSVTCQDMNECEQPG-YCSQMCTNTKGSYICSCNEGYVLEYDNHT 107
+ C SND C EC +PG C+ ++ + C G+ + +
Sbjct: 3 HMLHCVGDTYPSND-RCCH---EC-RPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSK 55
>1j2l_A Disintegrin triflavin; RGD motif, trimestatin, snake venom,
toxin; 1.70A {Trimeresurus flavoviridis} SCOP: g.20.1.1
PDB: 1fvl_A 2pji_A 1n4y_A 2pjf_A 2pjg_A 1q7i_A 1q7j_A
1l3x_A 3c05_A 3c05_B
Length = 70
Score = 26.2 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 17 DCPNGADEGPGCDLAECKHK------FGLCSNTCHPTPLGALC 53
DC G+ P CD A CK + GLC + C +C
Sbjct: 5 DC--GSPSNPCCDAATCKLRPGAQCADGLCCDQCRFKKKRTIC 45
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR
superfamily, viral protein; HET: NAG; 2.65A {Human
herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Length = 167
Score = 27.8 bits (61), Expect = 5.2
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 19/78 (24%)
Query: 12 CDGKTDCPNGADEGPGCDLAECKHKFGLCSNT-CHPTPLGALCTCPPGEILSNDS-VTCQ 69
C G G +T C CPPG N + CQ
Sbjct: 100 CRAYATSSPGQRVQKGG---------TESQDTLCQN--------CPPGTFSPNGTLEECQ 142
Query: 70 DMNECEQPGYCSQMCTNT 87
+C + T++
Sbjct: 143 HQTKCSWLVTKAGAGTSS 160
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2,
X-RAY, structure, structural genomics, PSI-2; 2.40A
{Bifidobacterium longum NCC2705}
Length = 343
Score = 28.4 bits (64), Expect = 5.3
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 127 LVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIG 160
V++ + V S L++G+ D+
Sbjct: 305 RVSEAAKADHGEAIDSFVASEHGLLDGIVLDYGR 338
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 28.0 bits (61), Expect = 5.5
Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 17/96 (17%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
+ V C D G + NT TP A+
Sbjct: 95 TVPHXASVVQVGFPCLGXQD-GVAAFEVDVIV-MNSEGNTILXTPQNAIFFK-------- 144
Query: 64 DSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGY 99
+ C G+C+ IC C +G+
Sbjct: 145 TCQQAECPGGCRNGGFCN-------ERRICECPDGF 173
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 28.4 bits (63), Expect = 5.6
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 25/97 (25%)
Query: 12 CDGKTDCPNGADEGPGCDL---AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
C +C N + C L AEC + LC C G +C
Sbjct: 229 CGSPANCQNPCCDAATCKLKPGAECGNG--LCCYQCKIKTAGTVC--------------R 272
Query: 69 QDMNECEQPGYC---SQMCTNT---KGSYICSCNEGY 99
+ +EC+ P +C S C + C N GY
Sbjct: 273 RARDECDVPEHCTGQSAECPRDQLQQNGKPCQNNRGY 309
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase;
1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB:
1t6d_A 2j4r_A*
Length = 315
Score = 28.3 bits (64), Expect = 6.1
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 140 AQDIVVSGLDLVEGLAYDWIGGH 162
++VS L EG+ +
Sbjct: 290 KDCLIVSDWGLREGVLVSEVLKE 312
>1rid_A Complement control protein; regulation, SCR, immune system; HET:
IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1
g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A
1vvc_A 1vvd_A 1vve_A
Length = 244
Score = 27.9 bits (62), Expect = 6.2
Identities = 16/99 (16%), Positives = 24/99 (24%), Gaps = 26/99 (26%)
Query: 28 CDLAEC----KHKFGLCSNTCHPTPLGALCT--CPPG-EILSNDSVTCQ-------DMNE 73
C + K K + ++ +G C PG + + N+
Sbjct: 2 CTIPSRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTGWTLFNQ 61
Query: 74 CEQPGYCSQMCTNTKGSYICS-----------CNEGYVL 101
C C G CN GY L
Sbjct: 62 C-IKRRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYHL 99
>3iyp_F Complement decay-accelerating factor; virus, receptor, complex,
echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo
sapiens}
Length = 381
Score = 28.1 bits (62), Expect = 7.1
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 15/106 (14%)
Query: 9 TKVCDGKTDCPNGADEGPGCDLAECKHKFG-LCSNTCHP-----TPLGALCTCPPGEILS 62
+ C+ T + + + P + G + C P L TC S
Sbjct: 95 NRSCEVPTRLNSASLKQPYIT--QNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWS 152
Query: 63 NDSVTCQDMNECEQP-----GYCSQMCTNTKGSYI-CSCNEGYVLE 102
C+ + C P G G+ I SCN GY L
Sbjct: 153 TAVEFCKKKS-CPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLF 197
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 27.8 bits (61), Expect = 8.0
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 324 NGMLYYSTLKCTRWLFWTDWGENPRIERIGM--DGSNRSTIISTKIYWPNGLTLDIATRR 381
Y + + W + + + N +++ + NG+ + +
Sbjct: 175 PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKY 234
Query: 382 VYFADS 387
VY A+
Sbjct: 235 VYIAEL 240
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 27.8 bits (62), Expect = 8.1
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
+ EG A+ + W D R+ E+GT ++L G +D
Sbjct: 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATA--FTNGNAVDA 95
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 27.1 bits (60), Expect = 8.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 68 CQDMNECEQPGYCSQMCTNTKGSYICSCNEGY 99
C + + C T G+Y CSC G+
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGF 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.448
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,455,539
Number of extensions: 464135
Number of successful extensions: 2118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1442
Number of HSP's successfully gapped: 478
Length of query: 461
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,993,456
Effective search space: 1453617984
Effective search space used: 1453617984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.9 bits)