BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17326
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 41/255 (16%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD SSR II+++IYWPNGLTLD +++Y+A++KL+FI N DGT+RQ
Sbjct: 157 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--------- 207
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
VV GS L HP +LT+FED LYWTD + +L+ +K+ G+ + I P+ IH
Sbjct: 208 ---VVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 262
Query: 121 HHPSLQPITRNDC-VNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGR-CVEEETPVLLV 178
QP N C ++ Y C C G ++ ++G+ C + T +LL+
Sbjct: 263 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322
Query: 179 MKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFD 238
+ + + +SL +TP D+ L+ D + + + +++D
Sbjct: 323 ARRTDLRRISL------DTP--------DFTDIVLQLED-----------IRHAIAIDYD 357
Query: 239 KKAAMLYWLEGTKKA 253
+YW + +A
Sbjct: 358 PVEGYIYWTDDEVRA 372
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 17/165 (10%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
+D S R +++T + WPNGL LD ++Y+ ++K D I+ N DGT R+
Sbjct: 465 LDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR---------- 514
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
V + H T+ D +YWTD Q + HK + + ++ L P + +
Sbjct: 515 ----VLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQL---PDLMGL 567
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKD 165
++ + ++ G C C GF + D
Sbjct: 568 KATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISD 612
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 32/126 (25%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQ----QDT--- 53
+D S +++ +I P+G+ +D R +Y+ ++ D I+ +GT R+ +D
Sbjct: 378 IDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEP 437
Query: 54 -----------LYWTD------------RQLNRVVAGSHYLLHPHSLTI--FEDTLYWTD 88
+YWTD +RVV + L P+ L + E +YW D
Sbjct: 438 RAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGD 497
Query: 89 RQLNRV 94
+ +++
Sbjct: 498 AKTDKI 503
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 41/255 (16%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD SSR II+++IYWPNGLTLD +++Y+A++KL+FI N DGT+RQ
Sbjct: 149 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--------- 199
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
VV GS L HP +LT+FED LYWTD + +L+ +K+ G+ + I P+ IH
Sbjct: 200 ---VVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 254
Query: 121 HHPSLQPITRNDC-VNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGR-CVEEETPVLLV 178
QP N C ++ Y C C G ++ ++G+ C + T +LL+
Sbjct: 255 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 314
Query: 179 MKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFD 238
+ + + +SL +TP D+ L+ D + + + +++D
Sbjct: 315 ARRTDLRRISL------DTP--------DFTDIVLQLED-----------IRHAIAIDYD 349
Query: 239 KKAAMLYWLEGTKKA 253
+YW + +A
Sbjct: 350 PVEGYIYWTDDEVRA 364
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 18/177 (10%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
+D S R +++T + WPNGL LD ++Y+ ++K D I+ N DGT R+
Sbjct: 457 LDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR---------- 506
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
V + H T+ D +YWTD Q + HK + + ++ L P + +
Sbjct: 507 ----VLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQL---PDLMGL 559
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGR-CVEEETPVL 176
++ + ++ G C C GF + D + C+ E +L
Sbjct: 560 KATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCIVPEAFLL 616
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 32/126 (25%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQ----QDT--- 53
+D S +++ +I P+G+ +D R +Y+ ++ D I+ +GT R+ +D
Sbjct: 370 IDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEP 429
Query: 54 -----------LYWTD------------RQLNRVVAGSHYLLHPHSLTI--FEDTLYWTD 88
+YWTD +RVV + L P+ L + E +YW D
Sbjct: 430 RAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGD 489
Query: 89 RQLNRV 94
+ +++
Sbjct: 490 AKTDKI 495
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD S R I T ++WPNGLT+D A RR+Y+ ++K I+ N DG+ R+
Sbjct: 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---------- 238
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
S L HP ++T+FED+LYWTD + SA+KF GKNQ ++ + + P+ IH
Sbjct: 239 ----AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEE 171
HP QP +N C + YTC C GFR C E
Sbjct: 295 LHPQRQPAGKNRCGDNNGGCTHLCLPSGQN-YTCACPTGFRKINSHACALE 344
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD S R I T ++WPNGLT+D A RR+Y+ ++K I+ N DG+ R+
Sbjct: 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---------- 281
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
S L HP ++T+FED+LYWTD + SA+KF GKNQ ++ + + P+ IH
Sbjct: 282 ----AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVE 170
HP QP +N C + YTC C GFR C +
Sbjct: 338 LHPQRQPAGKNRCGDNNGGCTHLCLPSGQN-YTCACPTGFRKINSHACAQ 386
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 98/182 (53%), Gaps = 16/182 (8%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD SSR II+++IYWPNGLTLD +++Y+A++KL+FI N DGT+RQ
Sbjct: 149 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--------- 199
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
VV GS L HP +LT+FED LYWTD + +L+ +K+ G+ + I P+ IH
Sbjct: 200 ---VVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 254
Query: 121 HHPSLQPITRNDC-VNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGR-CVEEETPVLLV 178
QP N C ++ Y C C G ++ ++G+ C + T +LL+
Sbjct: 255 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 314
Query: 179 MK 180
+
Sbjct: 315 AR 316
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD SSR II+++IYWPNGLTLD +++Y+A++KL+FI N DGT+RQ
Sbjct: 152 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--------- 202
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
VV GS L HP +LT+FED LYWTD + +L+ +K+ G+ + I P+ IH
Sbjct: 203 ---VVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257
Query: 121 HHPSLQPITRNDC-VNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEE 171
QP N C ++ Y C C G ++ ++G+ ++
Sbjct: 258 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 309
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 42/252 (16%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD S R+T++ + NGLT+D A RR+Y+ + + I+ N G +R+
Sbjct: 153 MDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---------- 201
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
V+A L HP LT ++D +YWTD + A+K G+N+T++ + + I V
Sbjct: 202 ---VIADD--LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 256
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
H S Q N+C ++ G+ C C A + + D R T LL +
Sbjct: 257 FHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ 315
Query: 181 GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
S I + + D++++P II P+ + N +++D
Sbjct: 316 KSAINRMVI---DEQQSP----------------------DIILPIHSLRNVRAIDYDPL 350
Query: 241 AAMLYWLEGTKK 252
LYW++ +
Sbjct: 351 DKQLYWIDSRQN 362
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
+D + R + + + P L LD ++++A+S L I+ + G
Sbjct: 463 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA------------- 509
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIH- 119
NR+V +L P LT+FE+ LYW D+Q + + +T V I+Q IH
Sbjct: 510 -NRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 568
Query: 120 VHHPSLQPITRNDCV 134
V +LQ ++ C
Sbjct: 569 VKELNLQEYRQHPCA 583
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 42/252 (16%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD S R+T++ + NGLT+D A RR+Y+ + + I+ N G +R+
Sbjct: 151 MDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---------- 199
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
V+A L HP LT ++D +YWTD + A+K G+N+T++ + + I V
Sbjct: 200 ---VIADD--LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 254
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
H S Q N+C ++ G+ C C A + + D R T LL +
Sbjct: 255 FHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ 313
Query: 181 GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
S I + + D++++P II P+ + N +++D
Sbjct: 314 KSAINRMVI---DEQQSP----------------------DIILPIHSLRNVRAIDYDPL 348
Query: 241 AAMLYWLEGTKK 252
LYW++ +
Sbjct: 349 DKQLYWIDSRQN 360
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
+D + R + + + P L LD ++++A+S L I+ + G
Sbjct: 461 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA------------- 507
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIH- 119
NR+V +L P LT+FE+ LYW D+Q + + +T V I+Q IH
Sbjct: 508 -NRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 566
Query: 120 VHHPSLQPITRNDCV 134
V +LQ ++ C
Sbjct: 567 VKELNLQEYRQHPCA 581
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 42/252 (16%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD S R+T++ + NGLT+D A RR+Y+ + + I+ N G +R+
Sbjct: 158 MDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---------- 206
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
V+A L HP LT ++D +YWTD + A+K G+N+T++ + + I V
Sbjct: 207 ---VIADD--LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 261
Query: 121 HHPSLQPITRNDCVNAXXXXXXXXXXXXXTGYTCKCIAGFRVTKDGRCVEEETPVLLVMK 180
H S Q N+C ++ G+ C C A + + D R T LL +
Sbjct: 262 FHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ 320
Query: 181 GSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKK 240
S I + + D++++P II P+ + N +++D
Sbjct: 321 KSAINRMVI---DEQQSP----------------------DIILPIHSLRNVRAIDYDPL 355
Query: 241 AAMLYWLEGTKK 252
LYW++ +
Sbjct: 356 DKQLYWIDSRQN 367
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
+D + R + + + P L LD ++++A+S L I+ + G
Sbjct: 468 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA------------- 514
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIH- 119
NR+V +L P LT+FE+ LYW D+Q + + +T V I+Q IH
Sbjct: 515 -NRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 573
Query: 120 VHHPSLQPITRNDCV 134
V +LQ ++ C
Sbjct: 574 VKELNLQEYRQHPCA 588
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG 67
++++ I WPNG+TLD+ + R+Y+ +SKL I + +G +R+ ++
Sbjct: 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILED 286
Query: 68 SHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
L HP SL +FED ++WTD + SA++ G + +++ + P + + H QP
Sbjct: 287 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 346
Query: 128 ITRNDCVNAXXXXXXXXXXXXXT--------GYTCKCIAGFRVTKDGR-CVEE 171
N C +TC C G + +D R C+ E
Sbjct: 347 RGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 399
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 34/151 (22%)
Query: 4 SSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQ------------- 50
SS T+IS I P+GL +D +Y+ +S L + + G R+
Sbjct: 148 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 207
Query: 51 -----QDTLYWTD---------RQLNRVVAGS---HYLLHPHSLT--IFEDTLYWTDRQL 91
+YWTD LN V S + P+ +T + LYW D +L
Sbjct: 208 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267
Query: 92 NRVLSAHKFRGKNQTVV--SHLISQPLSIHV 120
+ + S G +T++ ++ P S+ V
Sbjct: 268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAV 298
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG 67
++++ I WPNG+TLD+ + R+Y+ +SKL I + +G +R+ ++
Sbjct: 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILED 204
Query: 68 SHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
L HP SL +FED ++WTD + SA++ G + +++ + P + + H QP
Sbjct: 205 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 264
Query: 128 ITRNDCVNAXXXXX--------XXXXXXXXTGYTCKCIAGFRVTKDGR 167
N C +TC C G + +D R
Sbjct: 265 RGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMR 312
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 34/151 (22%)
Query: 4 SSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQ------------- 50
SS T+IS I P+GL +D +Y+ +S L + + G R+
Sbjct: 66 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 125
Query: 51 -----QDTLYWTD---------RQLNRVVAGS---HYLLHPHSLT--IFEDTLYWTDRQL 91
+YWTD LN V S + P+ +T + LYW D +L
Sbjct: 126 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185
Query: 92 NRVLSAHKFRGKNQTVV--SHLISQPLSIHV 120
+ + S G +T++ ++ P S+ V
Sbjct: 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAV 216
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Query: 8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG 67
++++ I WPNG+TLD+ + R+Y+ +SKL I + +G +R+ ++
Sbjct: 279 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILED 326
Query: 68 SHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
L HP SL +FED ++WTD + SA++ G + +++ + P + + H QP
Sbjct: 327 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 386
Query: 128 ITRNDC 133
N C
Sbjct: 387 RGVNWC 392
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 34/151 (22%)
Query: 4 SSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQ------------- 50
SS T+IS I P+GL +D +Y+ +S L + + G R+
Sbjct: 188 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 247
Query: 51 -----QDTLYWTD---------RQLNRVVAGS---HYLLHPHSLT--IFEDTLYWTDRQL 91
+YWTD LN V S + P+ +T + LYW D +L
Sbjct: 248 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 307
Query: 92 NRVLSAHKFRGKNQTVV--SHLISQPLSIHV 120
+ + S G +T++ ++ P S+ V
Sbjct: 308 HSISSIDVNGGNRKTILEDEKRLAHPFSLAV 338
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Query: 8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG 67
++++ I WPNG+TLD+ + R+Y+ +SKL I + +G +R+ ++
Sbjct: 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILED 598
Query: 68 SHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
L HP SL +FED ++WTD + SA++ G + +++ + P + + H QP
Sbjct: 599 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 658
Query: 128 ITRNDC 133
N C
Sbjct: 659 RGVNWC 664
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 34/151 (22%)
Query: 4 SSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQ------------- 50
SS T+IS I P+GL +D +Y+ +S L + + G R+
Sbjct: 460 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 519
Query: 51 -----QDTLYWTD---------RQLNRVVAGS---HYLLHPHSLT--IFEDTLYWTDRQL 91
+YWTD LN V S + P+ +T + LYW D +L
Sbjct: 520 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 579
Query: 92 NRVLSAHKFRGKNQTVV--SHLISQPLSIHV 120
+ + S G +T++ ++ P S+ V
Sbjct: 580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAV 610
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Query: 8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG 67
++++ I WPNG+TLD+ + R+Y+ +SKL I + +G +R+ ++
Sbjct: 533 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------ILED 580
Query: 68 SHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
L HP SL +FED ++WTD + SA++ G + +++ + P + + H QP
Sbjct: 581 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQP 640
Query: 128 ITRNDC 133
N C
Sbjct: 641 RGVNWC 646
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 34/151 (22%)
Query: 4 SSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQ------------- 50
SS T+IS I P+GL +D +Y+ +S L + + G R+
Sbjct: 442 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAI 501
Query: 51 -----QDTLYWTD---------RQLNRVVAGS---HYLLHPHSLT--IFEDTLYWTDRQL 91
+YWTD LN V S + P+ +T + LYW D +L
Sbjct: 502 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 561
Query: 92 NRVLSAHKFRGKNQTVV--SHLISQPLSIHV 120
+ + S G +T++ ++ P S+ V
Sbjct: 562 HSISSIDVNGGNRKTILEDEKRLAHPFSLAV 592
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 33/121 (27%)
Query: 7 STIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQ---------------- 50
+TII + P G+ LD R +++ +S+LD I+ DGT R+
Sbjct: 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD 130
Query: 51 --QDTLYWTDRQ-------------LNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNR 93
+ LYWTD NR + L P+ LT F L W D +R
Sbjct: 131 PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190
Query: 94 V 94
Sbjct: 191 A 191
>pdb|3CVZ|A Chain A, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|B Chain B, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|C Chain C, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|D Chain D, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
Length = 273
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 167 RCVEEETPVLLVMKGSQIVDVS---LKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGII 223
+ + E + K ++ DV+ LK G ++T ++ MK + D K GD ++GI
Sbjct: 129 KTQDSEGKNVAATKALKVKDVATFGLKSGGSEDTGYVVEMKAGAVEDKYGKVGDSTAGIA 188
Query: 224 T--PVVGVE---NGLQVEFDK 239
P G+E G ++F+K
Sbjct: 189 INLPSTGLEYAGKGTTIDFNK 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,237,676
Number of Sequences: 62578
Number of extensions: 268860
Number of successful extensions: 725
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 73
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)