Query psy17326
Match_columns 264
No_of_seqs 253 out of 1343
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:15:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 100.0 2.6E-29 5.6E-34 239.9 11.4 156 1-162 1054-1287(1289)
2 KOG1215|consensus 99.9 3.2E-24 7E-29 217.8 21.2 230 1-251 553-798 (877)
3 KOG1215|consensus 99.8 6.8E-20 1.5E-24 186.3 12.2 200 2-259 24-228 (877)
4 KOG1214|consensus 99.4 5.6E-12 1.2E-16 122.1 13.2 114 7-122 1017-1165(1289)
5 PF00058 Ldl_recept_b: Low-den 99.1 6E-10 1.3E-14 70.8 6.5 40 27-80 1-41 (42)
6 smart00135 LY Low-density lipo 99.0 8.3E-10 1.8E-14 69.7 6.1 42 8-49 2-43 (43)
7 PF14670 FXa_inhibition: Coagu 98.9 1.3E-09 2.7E-14 66.7 2.7 31 135-168 5-36 (36)
8 PF00058 Ldl_recept_b: Low-den 98.3 2.6E-06 5.7E-11 54.0 6.5 39 82-121 1-41 (42)
9 PF08450 SGL: SMP-30/Gluconola 98.2 0.00016 3.5E-09 62.7 18.1 70 16-104 1-72 (246)
10 PF08450 SGL: SMP-30/Gluconola 98.2 3.4E-05 7.4E-10 67.0 12.2 100 8-120 127-232 (246)
11 PLN02919 haloacid dehalogenase 97.8 0.0003 6.5E-09 73.5 13.3 83 9-103 562-657 (1057)
12 smart00135 LY Low-density lipo 97.7 9E-05 1.9E-09 46.2 5.4 36 226-261 5-43 (43)
13 PF12662 cEGF: Complement Clr- 97.5 9.2E-05 2E-09 40.9 2.1 22 151-172 1-23 (24)
14 PLN02919 haloacid dehalogenase 97.4 0.0032 7E-08 66.0 13.6 78 14-103 623-716 (1057)
15 COG3386 Gluconolactonase [Carb 97.2 0.004 8.6E-08 56.4 11.3 88 5-105 153-247 (307)
16 PF03088 Str_synth: Strictosid 97.0 0.0056 1.2E-07 45.2 7.7 73 18-98 1-85 (89)
17 KOG4499|consensus 96.6 0.035 7.6E-07 48.2 11.2 88 8-107 151-248 (310)
18 PF07645 EGF_CA: Calcium-bindi 96.6 0.0017 3.8E-08 40.8 2.4 35 131-168 3-42 (42)
19 PF09064 Tme5_EGF_like: Thromb 96.4 0.0033 7.2E-08 37.4 2.6 32 133-168 3-34 (34)
20 PF01436 NHL: NHL repeat; Int 96.1 0.015 3.2E-07 33.2 4.2 27 14-41 1-27 (28)
21 smart00181 EGF Epidermal growt 96.1 0.0069 1.5E-07 36.0 3.0 29 132-163 1-31 (35)
22 smart00179 EGF_CA Calcium-bind 95.8 0.012 2.6E-07 35.6 3.2 33 131-168 3-38 (39)
23 KOG1520|consensus 95.6 0.038 8.3E-07 50.9 6.9 65 15-92 115-182 (376)
24 cd01475 vWA_Matrilin VWA_Matri 95.6 0.0088 1.9E-07 51.4 2.6 33 130-165 187-221 (224)
25 TIGR02604 Piru_Ver_Nterm putat 95.6 1.5 3.2E-05 40.5 17.7 72 13-101 12-99 (367)
26 KOG4659|consensus 95.4 1.3 2.7E-05 47.0 17.5 75 13-102 363-439 (1899)
27 TIGR03032 conserved hypothetic 95.0 0.44 9.6E-06 43.2 11.5 99 12-128 200-320 (335)
28 COG3386 Gluconolactonase [Carb 94.9 0.28 6.1E-06 44.5 10.2 44 6-49 16-60 (307)
29 PF01731 Arylesterase: Arylest 94.9 0.083 1.8E-06 38.7 5.5 42 2-44 42-83 (86)
30 cd00053 EGF Epidermal growth f 94.8 0.035 7.5E-07 32.4 2.9 26 135-163 5-32 (36)
31 PF00008 EGF: EGF-like domain 94.4 0.031 6.8E-07 32.9 2.0 26 131-161 4-29 (32)
32 TIGR02604 Piru_Ver_Nterm putat 94.2 0.91 2E-05 42.0 12.2 99 6-121 63-192 (367)
33 PF03022 MRJP: Major royal jel 93.2 0.63 1.4E-05 41.7 9.0 63 15-90 186-255 (287)
34 PF07995 GSDH: Glucose / Sorbo 93.1 6 0.00013 36.0 15.4 54 14-81 1-58 (331)
35 PF03088 Str_synth: Strictosid 92.6 0.21 4.6E-06 36.8 4.3 43 5-47 47-89 (89)
36 cd00054 EGF_CA Calcium-binding 92.4 0.18 4E-06 29.7 3.1 29 131-162 3-34 (38)
37 PF10282 Lactonase: Lactonase, 91.7 4.1 8.8E-05 37.2 12.5 78 16-103 246-327 (345)
38 PF07995 GSDH: Glucose / Sorbo 91.6 11 0.00023 34.4 15.7 225 13-255 47-331 (331)
39 PF10282 Lactonase: Lactonase, 91.5 11 0.00024 34.4 21.1 79 13-100 142-222 (345)
40 TIGR03866 PQQ_ABC_repeats PQQ- 91.4 5 0.00011 34.4 12.3 89 16-120 208-298 (300)
41 KOG4659|consensus 90.4 0.53 1.2E-05 49.6 5.7 85 11-97 529-688 (1899)
42 PF06977 SdiA-regulated: SdiA- 88.4 2.9 6.2E-05 36.8 8.2 66 13-89 169-240 (248)
43 PF12661 hEGF: Human growth fa 86.0 0.72 1.6E-05 21.5 1.7 9 153-161 1-9 (13)
44 COG3391 Uncharacterized conser 85.4 14 0.0003 34.3 11.6 95 16-121 161-261 (381)
45 KOG1520|consensus 85.1 1.7 3.8E-05 40.2 5.2 80 13-97 159-246 (376)
46 PF01436 NHL: NHL repeat; Int 84.9 2.2 4.8E-05 24.0 3.8 24 72-95 2-26 (28)
47 PF12947 EGF_3: EGF domain; I 84.8 0.81 1.7E-05 27.7 2.0 24 136-162 6-31 (36)
48 COG3391 Uncharacterized conser 83.9 16 0.00034 34.0 11.2 93 13-121 72-168 (381)
49 KOG1219|consensus 82.9 1 2.2E-05 50.3 3.1 20 141-163 3916-3935(4289)
50 TIGR03032 conserved hypothetic 81.5 8.6 0.00019 35.0 8.0 48 71-119 202-249 (335)
51 KOG1219|consensus 81.1 1.1 2.5E-05 50.0 2.7 31 130-162 3864-3896(4289)
52 PRK11028 6-phosphogluconolacto 79.5 45 0.00098 29.7 22.6 74 14-99 34-109 (330)
53 PRK11028 6-phosphogluconolacto 75.9 40 0.00086 30.1 10.9 74 15-101 80-157 (330)
54 COG2133 Glucose/sorbosone dehy 74.3 27 0.00058 32.9 9.4 113 7-121 231-375 (399)
55 TIGR02658 TTQ_MADH_Hv methylam 72.1 71 0.0015 29.6 11.6 78 16-108 246-338 (352)
56 TIGR02276 beta_rpt_yvtn 40-res 69.3 21 0.00046 21.1 6.1 39 81-120 3-41 (42)
57 PF06977 SdiA-regulated: SdiA- 67.3 83 0.0018 27.6 10.5 72 14-99 21-93 (248)
58 KOG4289|consensus 65.3 4.7 0.0001 43.5 2.5 20 141-161 1729-1748(2531)
59 TIGR03606 non_repeat_PQQ dehyd 64.1 51 0.0011 31.7 9.1 41 8-49 23-63 (454)
60 PF03022 MRJP: Major royal jel 62.6 1E+02 0.0022 27.5 10.3 36 16-51 62-103 (287)
61 PF01826 TIL: Trypsin Inhibito 58.3 3.5 7.6E-05 27.0 0.1 18 154-171 35-52 (55)
62 PF08290 Hep_core_N: Hepatitis 55.4 6.4 0.00014 22.0 0.8 14 140-160 5-18 (27)
63 PF01731 Arylesterase: Arylest 54.4 52 0.0011 23.9 5.8 29 71-99 53-83 (86)
64 PRK04043 tolB translocation pr 53.2 79 0.0017 29.9 8.4 69 23-107 152-228 (419)
65 PRK04792 tolB translocation pr 52.9 1.8E+02 0.004 27.5 11.0 88 2-103 206-297 (448)
66 PHA02887 EGF-like protein; Pro 51.1 11 0.00024 29.1 1.8 26 141-170 98-123 (126)
67 PHA03099 epidermal growth fact 51.0 9.4 0.0002 30.0 1.5 34 129-170 49-82 (139)
68 COG4257 Vgb Streptogramin lyas 49.8 1.6E+02 0.0035 26.7 9.1 87 14-103 103-221 (353)
69 PF05345 He_PIG: Putative Ig d 49.6 18 0.00039 23.3 2.5 24 12-35 8-31 (49)
70 TIGR02658 TTQ_MADH_Hv methylam 47.9 2.3E+02 0.005 26.2 20.5 80 15-106 47-142 (352)
71 PRK03629 tolB translocation pr 46.3 2.6E+02 0.0056 26.3 11.7 88 1-104 186-279 (429)
72 PF02425 GBP_PSP: Paralytic/GB 45.4 8.2 0.00018 20.5 0.3 16 155-170 6-21 (23)
73 KOG4499|consensus 42.4 56 0.0012 28.8 5.0 45 4-49 195-245 (310)
74 PF00954 S_locus_glycop: S-loc 41.8 1.4E+02 0.0031 22.1 6.9 28 130-161 77-107 (110)
75 PF05096 Glu_cyclase_2: Glutam 40.8 2.6E+02 0.0057 24.8 10.2 38 71-108 174-211 (264)
76 KOG3514|consensus 40.2 2.3E+02 0.0049 30.5 9.6 35 129-172 627-662 (1591)
77 PF04942 CC: CC domain; Inter 38.6 25 0.00055 21.2 1.7 15 155-169 19-33 (36)
78 KOG4260|consensus 36.8 55 0.0012 29.2 4.2 31 130-163 236-270 (350)
79 PRK05137 tolB translocation pr 34.2 2.8E+02 0.0061 25.9 9.0 66 24-104 163-238 (435)
80 COG2133 Glucose/sorbosone dehy 33.9 40 0.00086 31.8 3.0 74 12-88 64-147 (399)
81 smart00051 DSL delta serrate l 28.9 38 0.00082 23.1 1.5 25 137-161 29-59 (63)
82 TIGR03606 non_repeat_PQQ dehyd 28.9 78 0.0017 30.4 4.2 31 6-37 221-251 (454)
83 PF07974 EGF_2: EGF-like domai 28.4 57 0.0012 19.0 2.0 11 151-161 18-28 (32)
84 TIGR03118 PEPCTERM_chp_1 conse 28.4 3.5E+02 0.0076 24.8 7.9 74 25-111 197-290 (336)
85 PF01683 EB: EB module; Inter 28.2 47 0.001 21.2 1.9 17 151-168 36-52 (52)
86 KOG4649|consensus 26.4 1.6E+02 0.0034 26.5 5.2 41 18-58 34-79 (354)
87 PF13449 Phytase-like: Esteras 25.9 82 0.0018 28.5 3.7 35 16-51 86-126 (326)
88 PRK04043 tolB translocation pr 25.7 5.7E+02 0.012 24.1 11.7 49 1-51 176-227 (419)
89 TIGR03118 PEPCTERM_chp_1 conse 24.2 5.6E+02 0.012 23.5 8.9 61 16-90 139-207 (336)
90 KOG4289|consensus 24.1 81 0.0018 34.8 3.5 34 130-169 1501-1536(2531)
91 TIGR03866 PQQ_ABC_repeats PQQ- 23.6 4.4E+02 0.0095 22.0 13.8 75 14-103 30-106 (300)
92 PRK04922 tolB translocation pr 22.9 6.3E+02 0.014 23.6 10.4 49 2-51 192-242 (433)
93 PF02333 Phytase: Phytase; In 22.7 6.5E+02 0.014 23.7 10.1 66 15-93 208-283 (381)
94 PF02239 Cytochrom_D1: Cytochr 22.6 4.7E+02 0.01 24.2 8.1 90 15-120 269-365 (369)
95 PF08309 LVIVD: LVIVD repeat; 22.2 2.1E+02 0.0045 17.7 5.4 27 74-101 4-30 (42)
96 PF13449 Phytase-like: Esteras 21.7 4.9E+02 0.011 23.4 7.9 87 13-104 18-123 (326)
97 PRK04792 tolB translocation pr 21.1 4.9E+02 0.011 24.6 8.1 69 23-104 180-254 (448)
98 PRK01742 tolB translocation pr 20.9 5.2E+02 0.011 24.1 8.2 71 24-107 166-243 (429)
99 PF02239 Cytochrom_D1: Cytochr 20.8 6.7E+02 0.014 23.1 9.9 76 17-108 39-116 (369)
100 COG4257 Vgb Streptogramin lyas 20.6 1.7E+02 0.0036 26.6 4.3 49 72-120 62-111 (353)
101 PRK03629 tolB translocation pr 20.1 6.7E+02 0.014 23.5 8.7 15 37-51 179-193 (429)
No 1
>KOG1214|consensus
Probab=99.96 E-value=2.6e-29 Score=239.86 Aligned_cols=156 Identities=31% Similarity=0.576 Sum_probs=133.7
Q ss_pred CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE------------------eEEEeeccc--
Q psy17326 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ------------------DTLYWTDRQ-- 60 (264)
Q Consensus 1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~------------------~~lfwtd~~-- 60 (264)
|.|.+.++||.++|..|.|||||+..+.+||+|+.+++||++.|||+.|++ |+||||||+
T Consensus 1054 L~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe 1133 (1289)
T KOG1214|consen 1054 LEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE 1133 (1289)
T ss_pred ccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeecccccc
Confidence 568999999999999999999999999999999999999999999999987 899999995
Q ss_pred ---c---------ee-------------------------------------------EEeCCcccccceeeeeeCCEEE
Q psy17326 61 ---L---------NR-------------------------------------------VVAGSHYLLHPHSLTIFEDTLY 85 (264)
Q Consensus 61 ---~---------~~-------------------------------------------vl~~~~~l~~P~~l~v~~d~lY 85 (264)
| +| ++.+ .|.+||+|+-+++.+|
T Consensus 1134 nPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~--~LqYPF~itsy~~~fY 1211 (1289)
T KOG1214|consen 1134 NPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQN--NLQYPFSITSYADHFY 1211 (1289)
T ss_pred CCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhh--cccCceeeeeccccce
Confidence 1 11 2222 4789999999999999
Q ss_pred EEcCCCCeEEEEEccCCceeE-EEeccCCCceeEEEecccCCCccccccc--cCCcccceecCCCCCCCeeeecCCCeEE
Q psy17326 86 WTDRQLNRVLSAHKFRGKNQT-VVSHLISQPLSIHVHHPSLQPITRNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRV 162 (264)
Q Consensus 86 wtD~~~~~i~~~~k~~g~~~~-~i~~~~~~p~~i~v~~~~~qp~~~npC~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L 162 (264)
||||+.++|.+++|+.++... .+.....+.|||..+- ...|.+++||+ |+||.||||+. .++..|.||+..+.
T Consensus 1212 ~TDWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~-~~Cp~gstpCSedNGGCqHLCLpg---qngavcecpdnvkv 1287 (1289)
T KOG1214|consen 1212 HTDWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVY-PYCPTGSTPCSEDNGGCQHLCLPG---QNGAVCECPDNVKV 1287 (1289)
T ss_pred eeccccCceEEeeccccccccccccccccceEEEEecc-ccCCCCCCcccccCCcceeecccC---cCCccccCCcccee
Confidence 999999999999999887653 4556667799998773 45688999998 56999999975 36899999997653
No 2
>KOG1215|consensus
Probab=99.92 E-value=3.2e-24 Score=217.75 Aligned_cols=230 Identities=31% Similarity=0.521 Sum_probs=175.0
Q ss_pred CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCC-eEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee
Q psy17326 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLD-FIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI 79 (264)
Q Consensus 1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~-~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v 79 (264)
|||+.+++++..++.||+||++|..++++||+|.... .|++++++|.+|++ +... .+.|||++++
T Consensus 553 ~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~------------~~~~--~~~~p~~~~~ 618 (877)
T KOG1215|consen 553 LDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRV------------VDSE--DLPHPFGLSV 618 (877)
T ss_pred CCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEE------------eccc--cCCCceEEEE
Confidence 8999999999999999999999999999999999999 89999999999985 4444 4899999999
Q ss_pred eCCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEe-cccCCCcccccccc--CCcccceecCCCCCCCeeeec
Q psy17326 80 FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVH-HPSLQPITRNDCVN--APCQQLCLLSPSSSTGYTCKC 156 (264)
Q Consensus 80 ~~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~-~~~~qp~~~npC~~--~~CshlCl~~p~~~~~~~C~C 156 (264)
|++++||+||....+.+.++..|.+...+......|..++++ +...||.+.|+|.. ++|+|+|++.|. +.+|+|
T Consensus 619 ~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p~---~~~c~c 695 (877)
T KOG1215|consen 619 FEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRPQ---GSTCAC 695 (877)
T ss_pred ecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEeccccCCCCCCcccccCCCCCeeeecCCC---CCeeeC
Confidence 999999999999999999988876612344566778877766 77778889999985 599999999984 339999
Q ss_pred CCCeEEcC-CCCCCCCCccEEEEEeCCeEEEEEcCCCCCCCcc--eeEeeeC-------c--eeEEeeeCCCCCCCceEE
Q psy17326 157 IAGFRVTK-DGRCVEEETPVLLVMKGSQIVDVSLKPGDKKETP--VLLVMKG-------S--QIVDVSLKPGDKSSGIIT 224 (264)
Q Consensus 157 p~G~~L~~-~~tC~~~~~~~ll~~~~~~i~~i~~~~~~~~~~~--~~~~~~~-------~--~~~~~~l~~~~~~~~~~~ 224 (264)
|.|+.|.. +++|.. ...+++++.++.|..++.........| .....+. . .......+.... .. +
T Consensus 696 ~~~~~l~~~~~~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~ 771 (877)
T KOG1215|consen 696 PEGYRLSPDGKSCSS-PEGYLLITSRTGIPCISLDSELSPDQPLEDGDTIDRLEYWTDVRVGVAAVSSQNCAPG--YD-L 771 (877)
T ss_pred CCCCeecCCCCeecC-cccccccccccccceeecCcccCCCcccCCCcccccceecccccceeeEEEecCCCCc--cc-c
Confidence 99999988 568988 446899999999999987654332222 1111110 0 000011111110 11 2
Q ss_pred EecCCCCcEEEEEECCCCEEEEEeCCC
Q psy17326 225 PVVGVENGLQVEFDKKAAMLYWLEGTK 251 (264)
Q Consensus 225 ~~~~~~~~~~id~D~~~~~iYW~D~~~ 251 (264)
...+......+.+|+..+.|||+..-.
T Consensus 772 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 798 (877)
T KOG1215|consen 772 VGEGEPPPEGSAVDEAEDTLYWTCSAT 798 (877)
T ss_pred ccccCCCCCCceeehhhcceEEEeecc
Confidence 333455667899999999999999643
No 3
>KOG1215|consensus
Probab=99.82 E-value=6.8e-20 Score=186.27 Aligned_cols=200 Identities=34% Similarity=0.635 Sum_probs=165.7
Q ss_pred CCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeC
Q psy17326 2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFE 81 (264)
Q Consensus 2 DGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~ 81 (264)
||+.++.++...+.||||++||+..+++||+|++.+.|+++++||+.|+ +|++|+
T Consensus 24 dg~~~~~~~~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~-------------------------~l~~~~ 78 (877)
T KOG1215|consen 24 DGGERKILEKEEFEWPNGLTIDLAWQRIYWADAKNDLIESANYDGSGRR-------------------------ALTLFE 78 (877)
T ss_pred cCcceEEeeccceeCCCcceecchhheeeeccccCCceEEeccCCccce-------------------------eeeeec
Confidence 7888899999999999999999999999999999999999999999873 689999
Q ss_pred CEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEEecccCCCccccccccC---CcccceecCCCCCCCeeeecCC
Q psy17326 82 DTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVNA---PCQQLCLLSPSSSTGYTCKCIA 158 (264)
Q Consensus 82 d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~npC~~~---~CshlCl~~p~~~~~~~C~Cp~ 158 (264)
+.+||+| +.|..++|.+|+..+.+......|+.++++++..||...++|... +|+|+|+....- ..++|+|+.
T Consensus 79 ~~~y~~d---~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c-~~~~~~Cip 154 (877)
T KOG1215|consen 79 DGLYWTD---KSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPLAPDPCAESGNGPCSHCCLDKFSC-RTGSCKCIP 154 (877)
T ss_pred cceeecc---chhhhhccCCCCcceeehhcCCCCcceeEEecCCCCCCCCcccccCCCCCccccCCCCCC-cCccccCCC
Confidence 9999999 678899999999998887765559999999999999999999864 899999997632 244899999
Q ss_pred CeEEcCC-CCCCCCCccEEEEEeCCeEEEEEcCCCCCCCcceeEeeeCceeEEeeeCCCCCCCceEEEecCCCCcEEEEE
Q psy17326 159 GFRVTKD-GRCVEEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEF 237 (264)
Q Consensus 159 G~~L~~~-~tC~~~~~~~ll~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~id~ 237 (264)
+..+..+ ..|.+...+.+++.....++...+ +. ....++.++.+..++++
T Consensus 155 ~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~------------------------~~-----~~~~~~~d~~~~~~~~~ 205 (877)
T KOG1215|consen 155 GDWLCDGEADCPDGSDELNCAVRRCEPRGASL------------------------DC-----IVAIKVCDIQHDCADDY 205 (877)
T ss_pred CceeCCCCCccccchhhhcccccccCcccccc------------------------cc-----ceeeeecCccccccccc
Confidence 9998774 589988776665544454555422 11 34567778888999999
Q ss_pred ECCCCEEEEEeCC-CeeeccCCC
Q psy17326 238 DKKAAMLYWLEGT-KKANEEDGG 259 (264)
Q Consensus 238 D~~~~~iYW~D~~-~~~~~~~~~ 259 (264)
|...+.+||++.+ ....+.+|+
T Consensus 206 d~~~~~~~~~~~~~~~~~~c~g~ 228 (877)
T KOG1215|consen 206 DESEGRIYWTDDSRIEVTRCDGS 228 (877)
T ss_pred ccccCcccccCCcceeEEEecCC
Confidence 9999999999985 455555554
No 4
>KOG1214|consensus
Probab=99.38 E-value=5.6e-12 Score=122.07 Aligned_cols=114 Identities=23% Similarity=0.443 Sum_probs=90.6
Q ss_pred EEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE------------------eEEEeecccc-------
Q psy17326 7 STIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ------------------DTLYWTDRQL------- 61 (264)
Q Consensus 7 ~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~------------------~~lfwtd~~~------- 61 (264)
++++.-.-.-|-||+.|-.++++||+|.....|.++.|+|...++ .++||+|+.+
T Consensus 1017 k~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~ 1096 (1289)
T KOG1214|consen 1017 KTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVAL 1096 (1289)
T ss_pred hceEecccceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheee
Confidence 344444455689999999999999999999999999999998765 5799999852
Q ss_pred -----eeEEeCCcccccceeeee--eCCEEEEEcCCCC--eEEEEEccCCceeEEEe-ccCCCceeEEEec
Q psy17326 62 -----NRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLN--RVLSAHKFRGKNQTVVS-HLISQPLSIHVHH 122 (264)
Q Consensus 62 -----~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~~~--~i~~~~k~~g~~~~~i~-~~~~~p~~i~v~~ 122 (264)
+++|... .|.+|-+|++ ++..||||||.+. .|.++.. +|++++++. ..+.-|.|+++.-
T Consensus 1097 LdG~~rkvLf~t-dLVNPR~iv~D~~rgnLYwtDWnRenPkIets~m-DG~NrRilin~DigLPNGLtfdp 1165 (1289)
T KOG1214|consen 1097 LDGSERKVLFYT-DLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSM-DGENRRILINTDIGLPNGLTFDP 1165 (1289)
T ss_pred cCCceeeEEEee-cccCcceEEeecccCceeeccccccCCcceeecc-CCccceEEeecccCCCCCceeCc
Confidence 3344332 5889998887 8999999999986 6777775 688877654 4788899998763
No 5
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=99.06 E-value=6e-10 Score=70.81 Aligned_cols=40 Identities=28% Similarity=0.567 Sum_probs=37.0
Q ss_pred CeEEEEeCCCC-eEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee
Q psy17326 27 RRVYFAESKLD-FIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF 80 (264)
Q Consensus 27 ~rLYW~D~~~~-~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~ 80 (264)
++|||+|...+ .|+++++||++|++ ++.+ .+.+|+||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~------------vi~~--~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRT------------VISD--DLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEE------------EEES--STSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEE------------EEEC--CCCCcCEEEEC
Confidence 58999999999 99999999999998 8887 48999999985
No 6
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=99.02 E-value=8.3e-10 Score=69.70 Aligned_cols=42 Identities=40% Similarity=0.703 Sum_probs=39.0
Q ss_pred EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCce
Q psy17326 8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR 49 (264)
Q Consensus 8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r 49 (264)
+++..++..|+|||+|+..++|||+|.....|++++++|+++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence 466779999999999999999999999999999999999874
No 7
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.88 E-value=1.3e-09 Score=66.68 Aligned_cols=31 Identities=32% Similarity=1.058 Sum_probs=25.4
Q ss_pred cCCcccceecCCCCCCCeeeecCCCeEEcCC-CCC
Q psy17326 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKD-GRC 168 (264)
Q Consensus 135 ~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~-~tC 168 (264)
|++|+|+|++.| ++++|+||.||.|.+| ++|
T Consensus 5 NGgC~h~C~~~~---g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 5 NGGCSHICVNTP---GSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp GGGSSSEEEEET---TSEEEE-STTEEE-TTSSSE
T ss_pred CCCcCCCCccCC---CceEeECCCCCEECcCCCCC
Confidence 569999999996 5899999999999985 566
No 8
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.33 E-value=2.6e-06 Score=53.97 Aligned_cols=39 Identities=33% Similarity=0.586 Sum_probs=32.1
Q ss_pred CEEEEEcCCCC-eEEEEEccCCcee-EEEeccCCCceeEEEe
Q psy17326 82 DTLYWTDRQLN-RVLSAHKFRGKNQ-TVVSHLISQPLSIHVH 121 (264)
Q Consensus 82 d~lYwtD~~~~-~i~~~~k~~g~~~-~~i~~~~~~p~~i~v~ 121 (264)
++|||+|+..+ .|.+++. +|+++ .++...+..|.||+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~-dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANL-DGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEET-TSTSEEEEEESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEEC-CCCCeEEEEECCCCCcCEEEEC
Confidence 58999999999 8888886 55554 5566689999999987
No 9
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.23 E-value=0.00016 Score=62.75 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=55.0
Q ss_pred CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCCCCe
Q psy17326 16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQLNR 93 (264)
Q Consensus 16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~~~~ 93 (264)
+|+|.+.|..+++|||+|...+.|.+.+.++...+. +.. ..|.|+++. ++.+|.++....
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-------------~~~----~~~~G~~~~~~~g~l~v~~~~~~- 62 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-------------IDL----PGPNGMAFDRPDGRLYVADSGGI- 62 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-------------EES----SSEEEEEEECTTSEEEEEETTCE-
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-------------Eec----CCCceEEEEccCCEEEEEEcCce-
Confidence 589999999999999999999999999999886653 332 349999986 789999997644
Q ss_pred EEEEEccCCce
Q psy17326 94 VLSAHKFRGKN 104 (264)
Q Consensus 94 i~~~~k~~g~~ 104 (264)
...+..+|+-
T Consensus 63 -~~~d~~~g~~ 72 (246)
T PF08450_consen 63 -AVVDPDTGKV 72 (246)
T ss_dssp -EEEETTTTEE
T ss_pred -EEEecCCCcE
Confidence 3346555543
No 10
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.16 E-value=3.4e-05 Score=66.98 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=72.8
Q ss_pred EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCc-----eeEeEEEeecccceeEEeCCcccccceeeee-eC
Q psy17326 8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTS-----RQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-FE 81 (264)
Q Consensus 8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~-----r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-~~ 81 (264)
..+..++..||||++++.++.||++|+..++|.+.+++... +++ +..-......|=||++ -+
T Consensus 127 ~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 127 TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV------------FIDFPGGPGYPDGLAVDSD 194 (246)
T ss_dssp EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE------------EEE-SSSSCEEEEEEEBTT
T ss_pred EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeee------------EEEcCCCCcCCCcceEcCC
Confidence 33445799999999999999999999999999999997433 333 3332212246999999 56
Q ss_pred CEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEE
Q psy17326 82 DTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120 (264)
Q Consensus 82 d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v 120 (264)
+.||.+++..++|.+++.. |+-...+.....+|..+++
T Consensus 195 G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp S-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred CCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 7999999999999999985 7766655544445555554
No 11
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.80 E-value=0.0003 Score=73.55 Aligned_cols=83 Identities=18% Similarity=0.351 Sum_probs=65.6
Q ss_pred EEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEe-CC----------cccccceee
Q psy17326 9 IISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVA-GS----------HYLLHPHSL 77 (264)
Q Consensus 9 iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~-~~----------~~l~~P~~l 77 (264)
++.+.+..|.|+++|..+++||++|...++|.+.+.+|.-... +-. +. ..+..|.||
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~------------ig~~g~~G~~dG~~~~a~f~~P~GI 629 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQ------------IGSTGEEGLRDGSFEDATFNRPQGL 629 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEE------------EccCCCcCCCCCchhccccCCCcEE
Confidence 4456889999999999999999999999999999999875433 211 00 125689999
Q ss_pred eee--CCEEEEEcCCCCeEEEEEccCCc
Q psy17326 78 TIF--EDTLYWTDRQLNRVLSAHKFRGK 103 (264)
Q Consensus 78 ~v~--~d~lYwtD~~~~~i~~~~k~~g~ 103 (264)
++- ++.||++|...+.|.+++..++.
T Consensus 630 avd~~gn~LYVaDt~n~~Ir~id~~~~~ 657 (1057)
T PLN02919 630 AYNAKKNLLYVADTENHALREIDFVNET 657 (1057)
T ss_pred EEeCCCCEEEEEeCCCceEEEEecCCCE
Confidence 995 57899999998888888865543
No 12
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.74 E-value=9e-05 Score=46.15 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=28.5
Q ss_pred ecCCCCcEEEEEECCCCEEEEEeCCC-eee--ccCCCCC
Q psy17326 226 VVGVENGLQVEFDKKAAMLYWLEGTK-KAN--EEDGGNE 261 (264)
Q Consensus 226 ~~~~~~~~~id~D~~~~~iYW~D~~~-~~~--~~~~~~~ 261 (264)
..++..+.++++|+.+++|||+|... .|. .++|+|+
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~ 43 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence 34667788999999999999999765 444 5899874
No 13
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.46 E-value=9.2e-05 Score=40.89 Aligned_cols=22 Identities=27% Similarity=0.887 Sum_probs=18.5
Q ss_pred CeeeecCCCeEEcC-CCCCCCCC
Q psy17326 151 GYTCKCIAGFRVTK-DGRCVEEE 172 (264)
Q Consensus 151 ~~~C~Cp~G~~L~~-~~tC~~~~ 172 (264)
+|+|.|+.||+|.+ +++|.+..
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCC
Confidence 58999999999988 56898753
No 14
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.35 E-value=0.0032 Score=65.98 Aligned_cols=78 Identities=13% Similarity=0.233 Sum_probs=62.1
Q ss_pred CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeC--------------Ccccccceeeee
Q psy17326 14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG--------------SHYLLHPHSLTI 79 (264)
Q Consensus 14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~--------------~~~l~~P~~l~v 79 (264)
+..|.||++|..++.||++|...++|.++++.+...++ +... ...+.+|.+|++
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~t------------lag~G~~g~~~~gg~~~~~~~ln~P~gVa~ 690 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRT------------LAGNGTKGSDYQGGKKGTSQVLNSPWDVCF 690 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEE------------EeccCcccCCCCCChhhhHhhcCCCeEEEE
Confidence 56899999999889999999999999999998765554 2110 012568999999
Q ss_pred e--CCEEEEEcCCCCeEEEEEccCCc
Q psy17326 80 F--EDTLYWTDRQLNRVLSAHKFRGK 103 (264)
Q Consensus 80 ~--~d~lYwtD~~~~~i~~~~k~~g~ 103 (264)
. ++.||++|...+.|...+..+|.
T Consensus 691 dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 691 EPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred ecCCCeEEEEECCCCeEEEEECCCCe
Confidence 5 68999999999999988876654
No 15
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.004 Score=56.44 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=60.4
Q ss_pred CcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC---CC--ceeEeEEEeecccceeEEeCCcccccceeeee
Q psy17326 5 SRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD---GT--SRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI 79 (264)
Q Consensus 5 ~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld---G~--~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v 79 (264)
..+.++...+..||||++++.++.||++|+...+|.+.+++ |. +++. | +... ..-..|=|+++
T Consensus 153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~---~--------~~~~-~~~G~PDG~~v 220 (307)
T COG3386 153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG---F--------VDFD-EEPGLPDGMAV 220 (307)
T ss_pred CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce---E--------EEcc-CCCCCCCceEE
Confidence 44556666799999999999999999999999999999998 32 2221 0 2222 12368999999
Q ss_pred eCCEEEE--EcCCCCeEEEEEccCCcee
Q psy17326 80 FEDTLYW--TDRQLNRVLSAHKFRGKNQ 105 (264)
Q Consensus 80 ~~d~lYw--tD~~~~~i~~~~k~~g~~~ 105 (264)
-.+-.|| .-|....|.+.+.. |+..
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l~ 247 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKLL 247 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcEE
Confidence 6655555 44443366666654 5433
No 16
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=96.95 E-value=0.0056 Score=45.19 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=42.6
Q ss_pred cEEEEeCCCCeEEEEeCCCCeEEEEecCCC--------ceeEeEEEeecccce--eEEeCCcccccceeeee--eCCEEE
Q psy17326 18 NGLTLDIATRRVYFAESKLDFIDFCNYDGT--------SRQQDTLYWTDRQLN--RVVAGSHYLLHPHSLTI--FEDTLY 85 (264)
Q Consensus 18 ~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~--------~r~~~~lfwtd~~~~--~vl~~~~~l~~P~~l~v--~~d~lY 85 (264)
|+|+|+..++.|||+|+... ++-. .+..|+|+.=|...+ +|+.. .|..|.|+++ -+++|+
T Consensus 1 ndldv~~~~g~vYfTdsS~~------~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~--~L~fpNGVals~d~~~vl 72 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSR------YDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD--GLYFPNGVALSPDESFVL 72 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--------TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--EESSEEEEEE-TTSSEEE
T ss_pred CceeEecCCCEEEEEeCccc------cCccceeeeeecCCCCcCEEEEECCCCeEEEehh--CCCccCeEEEcCCCCEEE
Confidence 58999998899999999642 1111 011144444333321 13433 3899999999 456999
Q ss_pred EEcCCCCeEEEEE
Q psy17326 86 WTDRQLNRVLSAH 98 (264)
Q Consensus 86 wtD~~~~~i~~~~ 98 (264)
.++..+.+|.+.-
T Consensus 73 v~Et~~~Ri~ryw 85 (89)
T PF03088_consen 73 VAETGRYRILRYW 85 (89)
T ss_dssp EEEGGGTEEEEEE
T ss_pred EEeccCceEEEEE
Confidence 9998888887654
No 17
>KOG4499|consensus
Probab=96.63 E-value=0.035 Score=48.19 Aligned_cols=88 Identities=25% Similarity=0.291 Sum_probs=69.7
Q ss_pred EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCC-----CceeEeEEEeecccceeEEeC--C--cccccceeee
Q psy17326 8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDG-----TSRQQDTLYWTDRQLNRVVAG--S--HYLLHPHSLT 78 (264)
Q Consensus 8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG-----~~r~~~~lfwtd~~~~~vl~~--~--~~l~~P~~l~ 78 (264)
.++.+.+.-||||+-|...+..|.+|+..-.|..-+||- +||++ ++.- + ..-.-|=||+
T Consensus 151 ~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~------------i~dlrk~~~~e~~~PDGm~ 218 (310)
T KOG4499|consen 151 ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKV------------IFDLRKSQPFESLEPDGMT 218 (310)
T ss_pred eeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcce------------eEEeccCCCcCCCCCCcce
Confidence 345568889999999999999999999999998888763 46776 4421 1 1124688999
Q ss_pred e-eCCEEEEEcCCCCeEEEEEccCCceeEE
Q psy17326 79 I-FEDTLYWTDRQLNRVLSAHKFRGKNQTV 107 (264)
Q Consensus 79 v-~~d~lYwtD~~~~~i~~~~k~~g~~~~~ 107 (264)
+ -++.||-+-|...+|++++..+|+-...
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 8 6789999999999999999999986543
No 18
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=96.59 E-value=0.0017 Score=40.85 Aligned_cols=35 Identities=23% Similarity=0.862 Sum_probs=26.2
Q ss_pred ccccc--CCcc--cceecCCCCCCCeeeecCCCeEEcC-CCCC
Q psy17326 131 NDCVN--APCQ--QLCLLSPSSSTGYTCKCIAGFRVTK-DGRC 168 (264)
Q Consensus 131 npC~~--~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~-~~tC 168 (264)
|+|.. +.|. +.|+..+ ++|+|.|+.||.+.. +++|
T Consensus 3 dEC~~~~~~C~~~~~C~N~~---Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTE---GSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp STTTTTSSSSSTTSEEEEET---TEEEEEESTTEEECTTSSEE
T ss_pred cccCCCCCcCCCCCEEEcCC---CCEEeeCCCCcEECCCCCcC
Confidence 56764 3576 7999986 689999999999765 3344
No 19
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=96.40 E-value=0.0033 Score=37.36 Aligned_cols=32 Identities=22% Similarity=0.602 Sum_probs=24.5
Q ss_pred cccCCcccceecCCCCCCCeeeecCCCeEEcCCCCC
Q psy17326 133 CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRC 168 (264)
Q Consensus 133 C~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC 168 (264)
|....|.+.|-+.. ...|.||+||.|.++.-|
T Consensus 3 Cn~t~CpA~CDpn~----~~~C~CPeGyIlde~~~c 34 (34)
T PF09064_consen 3 CNQTECPADCDPNS----PGQCFCPEGYILDEGSMC 34 (34)
T ss_pred cccccCCCccCCCC----CCceeCCCceEecCCccC
Confidence 55667888998863 579999999999765433
No 20
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.11 E-value=0.015 Score=33.25 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=23.5
Q ss_pred CCCccEEEEeCCCCeEEEEeCCCCeEEE
Q psy17326 14 IYWPNGLTLDIATRRVYFAESKLDFIDF 41 (264)
Q Consensus 14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~ 41 (264)
+..|.||++| .++.||-+|...++|..
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 4689999999 78999999998888753
No 21
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.09 E-value=0.0069 Score=35.99 Aligned_cols=29 Identities=34% Similarity=1.072 Sum_probs=22.5
Q ss_pred cccc-CCccc-ceecCCCCCCCeeeecCCCeEEc
Q psy17326 132 DCVN-APCQQ-LCLLSPSSSTGYTCKCIAGFRVT 163 (264)
Q Consensus 132 pC~~-~~Csh-lCl~~p~~~~~~~C~Cp~G~~L~ 163 (264)
+|.. +.|.+ .|+..+ +++.|.|+.||.+.
T Consensus 1 ~C~~~~~C~~~~C~~~~---~~~~C~C~~g~~g~ 31 (35)
T smart00181 1 ECASGGPCSNGTCINTP---GSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCcCCCCCCEEECCC---CCeEeECCCCCccC
Confidence 3555 57777 899874 68999999999763
No 22
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.80 E-value=0.012 Score=35.56 Aligned_cols=33 Identities=30% Similarity=1.009 Sum_probs=23.8
Q ss_pred ccccc-CCccc--ceecCCCCCCCeeeecCCCeEEcCCCCC
Q psy17326 131 NDCVN-APCQQ--LCLLSPSSSTGYTCKCIAGFRVTKDGRC 168 (264)
Q Consensus 131 npC~~-~~Csh--lCl~~p~~~~~~~C~Cp~G~~L~~~~tC 168 (264)
++|.. ..|.+ .|+..+ +++.|.|+.||. .+.+|
T Consensus 3 ~~C~~~~~C~~~~~C~~~~---g~~~C~C~~g~~--~g~~C 38 (39)
T smart00179 3 DECASGNPCQNGGTCVNTV---GSYRCECPPGYT--DGRNC 38 (39)
T ss_pred ccCcCCCCcCCCCEeECCC---CCeEeECCCCCc--cCCcC
Confidence 45655 56765 899775 589999999997 34456
No 23
>KOG1520|consensus
Probab=95.59 E-value=0.038 Score=50.89 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=44.9
Q ss_pred CCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC--cccccceeeee-eCCEEEEEcCCC
Q psy17326 15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS--HYLLHPHSLTI-FEDTLYWTDRQL 91 (264)
Q Consensus 15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~--~~l~~P~~l~v-~~d~lYwtD~~~ 91 (264)
++|-||+.|-.++.||-+|++.+ +..++..|..-+. +.... ....-.-++++ -++.|||||..+
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~------------l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSs 181 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAEL------------LADEAEGKPFKFLNDLDIDPEGVVYFTDSSS 181 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee-eEEECCCCCccee------------ccccccCeeeeecCceeEcCCCeEEEecccc
Confidence 78999999999999999999887 5667777766432 21110 01222334555 478999999886
Q ss_pred C
Q psy17326 92 N 92 (264)
Q Consensus 92 ~ 92 (264)
+
T Consensus 182 k 182 (376)
T KOG1520|consen 182 K 182 (376)
T ss_pred c
Confidence 3
No 24
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=95.58 E-value=0.0088 Score=51.43 Aligned_cols=33 Identities=33% Similarity=0.934 Sum_probs=26.7
Q ss_pred ccccc--cCCcccceecCCCCCCCeeeecCCCeEEcCC
Q psy17326 130 RNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKD 165 (264)
Q Consensus 130 ~npC~--~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~ 165 (264)
.++|. ++.|.|.|...+ ++|.|+|+.||.|.++
T Consensus 187 ~~~C~~~~~~c~~~C~~~~---g~~~c~c~~g~~~~~~ 221 (224)
T cd01475 187 PDLCATLSHVCQQVCISTP---GSYLCACTEGYALLED 221 (224)
T ss_pred chhhcCCCCCccceEEcCC---CCEEeECCCCccCCCC
Confidence 45675 358999999875 5899999999998764
No 25
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.58 E-value=1.5 Score=40.54 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=50.3
Q ss_pred CCCCccEEEEeCCCCeEEEEeCC-----------C-CeEEEEec---CCCc-eeEeEEEeecccceeEEeCCccccccee
Q psy17326 13 KIYWPNGLTLDIATRRVYFAESK-----------L-DFIDFCNY---DGTS-RQQDTLYWTDRQLNRVVAGSHYLLHPHS 76 (264)
Q Consensus 13 ~l~~P~gLaiD~~~~rLYW~D~~-----------~-~~Ie~~~l---dG~~-r~~~~lfwtd~~~~~vl~~~~~l~~P~~ 76 (264)
.+..|.+|++|.. ++||-++.. . ++|....- ||.- ..+ ++.. .+..|.|
T Consensus 12 ~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~------------vfa~--~l~~p~G 76 (367)
T TIGR02604 12 LLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN------------VFAE--ELSMVTG 76 (367)
T ss_pred ccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE------------Eeec--CCCCccc
Confidence 5999999999974 789999852 2 37766654 4542 333 5554 3789999
Q ss_pred eeeeCCEEEEEcCCCCeEEEEEccC
Q psy17326 77 LTIFEDTLYWTDRQLNRVLSAHKFR 101 (264)
Q Consensus 77 l~v~~d~lYwtD~~~~~i~~~~k~~ 101 (264)
|++..+-||-++.. .|.++....
T Consensus 77 i~~~~~GlyV~~~~--~i~~~~d~~ 99 (367)
T TIGR02604 77 LAVAVGGVYVATPP--DILFLRDKD 99 (367)
T ss_pred eeEecCCEEEeCCC--eEEEEeCCC
Confidence 99976669998744 577775433
No 26
>KOG4659|consensus
Probab=95.43 E-value=1.3 Score=46.99 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=59.2
Q ss_pred CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCC
Q psy17326 13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQ 90 (264)
Q Consensus 13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~ 90 (264)
.|..|.+||.-+ .+.||-.|. ..|.++..||.-+.+ +--+.....|-+-||+ ..+.||-+|..
T Consensus 363 ~L~aPvala~a~-DGSl~VGDf--NyIRRI~~dg~v~tI------------l~L~~t~~sh~Yy~AvsPvdgtlyvSdp~ 427 (1899)
T KOG4659|consen 363 SLFAPVALAYAP-DGSLIVGDF--NYIRRISQDGQVSTI------------LTLGLTDTSHSYYIAVSPVDGTLYVSDPL 427 (1899)
T ss_pred eeeceeeEEEcC-CCcEEEccc--hheeeecCCCceEEE------------EEecCCCccceeEEEecCcCceEEecCCC
Confidence 567899998876 578998885 789999999988775 3222234578888888 78999999999
Q ss_pred CCeEEEEEccCC
Q psy17326 91 LNRVLSAHKFRG 102 (264)
Q Consensus 91 ~~~i~~~~k~~g 102 (264)
++.|+|+....+
T Consensus 428 s~qv~rv~sl~~ 439 (1899)
T KOG4659|consen 428 SKQVWRVSSLEP 439 (1899)
T ss_pred cceEEEeccCCc
Confidence 999999976554
No 27
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=95.00 E-value=0.44 Score=43.17 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=68.9
Q ss_pred CCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC-CCceeEeEEEeecccceeEEeCCcccccceeeeeeCCEEEEEcCC
Q psy17326 12 TKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD-GTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQ 90 (264)
Q Consensus 12 ~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld-G~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d~lYwtD~~ 90 (264)
+++..|++--.. +++||..|++.+.|..++.+ |....+ ..- -..|.||++.+++++-+=.+
T Consensus 200 ~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~V-------------a~v---pG~~rGL~f~G~llvVgmSk 261 (335)
T TIGR03032 200 SGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPV-------------AFL---PGFTRGLAFAGDFAFVGLSK 261 (335)
T ss_pred cCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEE-------------EEC---CCCCcccceeCCEEEEEecc
Confidence 477777776554 79999999999999999998 665543 221 25778888888877776544
Q ss_pred CC-------------------eEEEEEccCCceeEEEe--ccCCCceeEEEecccCCCc
Q psy17326 91 LN-------------------RVLSAHKFRGKNQTVVS--HLISQPLSIHVHHPSLQPI 128 (264)
Q Consensus 91 ~~-------------------~i~~~~k~~g~~~~~i~--~~~~~p~~i~v~~~~~qp~ 128 (264)
.+ +|..+|..+|.-...+. ......|++.|.-..++|.
T Consensus 262 ~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~P~ 320 (335)
T TIGR03032 262 LRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRRPE 320 (335)
T ss_pred ccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCCCcc
Confidence 32 35556766776555433 3467788888886667774
No 28
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.87 E-value=0.28 Score=44.47 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=36.6
Q ss_pred cEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecC-CCce
Q psy17326 6 RSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYD-GTSR 49 (264)
Q Consensus 6 r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld-G~~r 49 (264)
...++.....+.+|-+-|...+.|||+|...++|.+.+.. |..+
T Consensus 16 ~~~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~ 60 (307)
T COG3386 16 PVTLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKR 60 (307)
T ss_pred ceeEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceE
Confidence 3456667888999999999999999999999999999986 5444
No 29
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.86 E-value=0.083 Score=38.69 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=34.4
Q ss_pred CCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEec
Q psy17326 2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNY 44 (264)
Q Consensus 2 DGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~l 44 (264)
||+..+++ .+++..||||++|+..+.||-++...+.|.....
T Consensus 42 d~~~~~~v-a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 42 DGKEVKVV-ASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eCCEeEEe-eccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 56665554 4589999999999999999999998888876653
No 30
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=94.79 E-value=0.035 Score=32.44 Aligned_cols=26 Identities=31% Similarity=0.911 Sum_probs=19.5
Q ss_pred cCCcc--cceecCCCCCCCeeeecCCCeEEc
Q psy17326 135 NAPCQ--QLCLLSPSSSTGYTCKCIAGFRVT 163 (264)
Q Consensus 135 ~~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~ 163 (264)
...|. +.|+..+ ++++|.|+.||...
T Consensus 5 ~~~C~~~~~C~~~~---~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTP---GSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCC---CCeEeECCCCCccc
Confidence 34555 6888875 57999999999654
No 31
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=94.43 E-value=0.031 Score=32.94 Aligned_cols=26 Identities=42% Similarity=1.023 Sum_probs=19.0
Q ss_pred cccccCCcccceecCCCCCCCeeeecCCCeE
Q psy17326 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFR 161 (264)
Q Consensus 131 npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~ 161 (264)
+||.+++ .|+..+ .++|.|.|+.||+
T Consensus 4 ~~C~n~g---~C~~~~--~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 4 NPCQNGG---TCIDLP--GGGYTCECPPGYT 29 (32)
T ss_dssp TSSTTTE---EEEEES--TSEEEEEEBTTEE
T ss_pred CcCCCCe---EEEeCC--CCCEEeECCCCCc
Confidence 4666542 677765 2589999999996
No 32
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.16 E-value=0.91 Score=41.97 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=64.1
Q ss_pred cEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEE-ecCCC-----ceeEeEEEeecccceeEEeCCcc-----cccc
Q psy17326 6 RSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFC-NYDGT-----SRQQDTLYWTDRQLNRVVAGSHY-----LLHP 74 (264)
Q Consensus 6 r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~-~ldG~-----~r~~~~lfwtd~~~~~vl~~~~~-----l~~P 74 (264)
+.+++-+++..|+||+++.. + ||-++. ..|.+. +.+|. .+++ ++..-.. ...+
T Consensus 63 ~~~vfa~~l~~p~Gi~~~~~-G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~------------l~~~~~~~~~~~~~~~ 126 (367)
T TIGR02604 63 KSNVFAEELSMVTGLAVAVG-G-VYVATP--PDILFLRDKDGDDKADGEREV------------LLSGFGGQINNHHHSL 126 (367)
T ss_pred eeEEeecCCCCccceeEecC-C-EEEeCC--CeEEEEeCCCCCCCCCCccEE------------EEEccCCCCCcccccc
Confidence 34455567899999999864 4 998874 457666 44442 3333 4432111 1237
Q ss_pred eeeee-eCCEEEEEcCCC-------------------CeEEEEEccCCceeEEEeccCCCceeEEEe
Q psy17326 75 HSLTI-FEDTLYWTDRQL-------------------NRVLSAHKFRGKNQTVVSHLISQPLSIHVH 121 (264)
Q Consensus 75 ~~l~v-~~d~lYwtD~~~-------------------~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~ 121 (264)
.++++ -.++||+++... +.|++++.. |+..+++..++..|.++.+-
T Consensus 127 ~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd-g~~~e~~a~G~rnp~Gl~~d 192 (367)
T TIGR02604 127 NSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD-GGKLRVVAHGFQNPYGHSVD 192 (367)
T ss_pred cCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC-CCeEEEEecCcCCCccceEC
Confidence 78888 455999988732 357788764 55567777888889999764
No 33
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.22 E-value=0.63 Score=41.72 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=48.7
Q ss_pred CCccEEEEeCCCCeEEEEeCCCCeEEEEecCC----CceeEeEEEeecccceeEEeCCcccccceeeeeeC---CEEEEE
Q psy17326 15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYDG----TSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFE---DTLYWT 87 (264)
Q Consensus 15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG----~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~---d~lYwt 87 (264)
..-.|+++|. ++.||+++.....|.+.+.++ .+.++ +...+..+..|-+|++.+ ++||..
T Consensus 186 ~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~------------l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 186 SQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEI------------LAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp -SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEE------------EEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred CCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchhe------------eEEcCceeeccceeeeccccCceEEEE
Confidence 4568999999 899999999999999999998 45555 666654489999999977 899987
Q ss_pred cCC
Q psy17326 88 DRQ 90 (264)
Q Consensus 88 D~~ 90 (264)
..+
T Consensus 253 snr 255 (287)
T PF03022_consen 253 SNR 255 (287)
T ss_dssp E-S
T ss_pred ECc
Confidence 644
No 34
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.06 E-value=6 Score=36.04 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=38.5
Q ss_pred CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC----cccccceeeeeeC
Q psy17326 14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS----HYLLHPHSLTIFE 81 (264)
Q Consensus 14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~----~~l~~P~~l~v~~ 81 (264)
|..|.+|++.+. ++||.++. .++|...+-+|..... +..-. .....+.+|++..
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~------------v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTP------------VADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEE------------EEE-TTTBTSTTBSEEEEEE-T
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcce------------ecccccccccccCCcccceecc
Confidence 467999999986 79999988 8999999988887232 22211 1235679999866
No 35
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=92.65 E-value=0.21 Score=36.79 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=35.8
Q ss_pred CcEEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCC
Q psy17326 5 SRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGT 47 (264)
Q Consensus 5 ~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~ 47 (264)
....++-.+|..|||+++...+..|..++....+|.+.-+.|.
T Consensus 47 ~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~Gp 89 (89)
T PF03088_consen 47 KETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWLKGP 89 (89)
T ss_dssp TEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEESSST
T ss_pred CeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEEeCC
Confidence 3444555689999999999999999999999999999988874
No 36
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=92.39 E-value=0.18 Score=29.68 Aligned_cols=29 Identities=31% Similarity=0.948 Sum_probs=20.9
Q ss_pred ccccc-CCcc--cceecCCCCCCCeeeecCCCeEE
Q psy17326 131 NDCVN-APCQ--QLCLLSPSSSTGYTCKCIAGFRV 162 (264)
Q Consensus 131 npC~~-~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L 162 (264)
++|.. ..|. ..|...+ +++.|.|+.||..
T Consensus 3 ~~C~~~~~C~~~~~C~~~~---~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASGNPCQNGGTCVNTV---GSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCCCCcCCCCEeECCC---CCeEeECCCCCcC
Confidence 45654 4663 5788765 5799999999863
No 37
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.65 E-value=4.1 Score=37.21 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=55.7
Q ss_pred CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCCCCe
Q psy17326 16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNR 93 (264)
Q Consensus 16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~~~~ 93 (264)
+|.+|++++..+.||-+....+.|...++|+...+...+ . .+.. .-.+|.++++ -+++||-+....+.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~-------~-~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLV-------Q-TVPT--GGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEE-------E-EEEE--SSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEE-------E-EEeC--CCCCccEEEEeCCCCEEEEEecCCCe
Confidence 799999999999999999999999999997553211000 0 1111 1357988888 78899999999886
Q ss_pred EE--EEEccCCc
Q psy17326 94 VL--SAHKFRGK 103 (264)
Q Consensus 94 i~--~~~k~~g~ 103 (264)
|. +++..+|.
T Consensus 316 v~vf~~d~~tG~ 327 (345)
T PF10282_consen 316 VSVFDIDPDTGK 327 (345)
T ss_dssp EEEEEEETTTTE
T ss_pred EEEEEEeCCCCc
Confidence 65 45555665
No 38
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.55 E-value=11 Score=34.43 Aligned_cols=225 Identities=14% Similarity=0.152 Sum_probs=105.6
Q ss_pred CCCCccEEEEeC---CCCeEEEEeCCC--------CeEEEEecCCCc-----eeEeEEEeecccceeEEeCC----cccc
Q psy17326 13 KIYWPNGLTLDI---ATRRVYFAESKL--------DFIDFCNYDGTS-----RQQDTLYWTDRQLNRVVAGS----HYLL 72 (264)
Q Consensus 13 ~l~~P~gLaiD~---~~~rLYW~D~~~--------~~Ie~~~ldG~~-----r~~~~lfwtd~~~~~vl~~~----~~l~ 72 (264)
...-+.|||+|+ .++.||.+-... .+|.+..++... .++ ++... ...+
T Consensus 47 ~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~------------l~~~~p~~~~~~H 114 (331)
T PF07995_consen 47 GERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEV------------LVTGLPDTSSGNH 114 (331)
T ss_dssp TTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEE------------EEEEEES-CSSSS
T ss_pred ccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceE------------EEEEeCCCCCCCC
Confidence 345678999999 467888766532 467777776551 222 33221 1123
Q ss_pred cceeeee-eCCEEEEEcCC-------------CCeEEEEEccCCc-------------eeEEEeccCCCceeEEEecccC
Q psy17326 73 HPHSLTI-FEDTLYWTDRQ-------------LNRVLSAHKFRGK-------------NQTVVSHLISQPLSIHVHHPSL 125 (264)
Q Consensus 73 ~P~~l~v-~~d~lYwtD~~-------------~~~i~~~~k~~g~-------------~~~~i~~~~~~p~~i~v~~~~~ 125 (264)
+-.+|++ -.++||++--. ..+|.|++.. |+ ..++...++..|++++.. +..
T Consensus 115 ~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d-~~t 192 (331)
T PF07995_consen 115 NGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFD-PNT 192 (331)
T ss_dssp -EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEE-TTT
T ss_pred CCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCCCCCccccCCCceEEEEEeCCCccccEEEE-CCC
Confidence 3455676 35799997322 3478899863 43 456777788899999765 321
Q ss_pred CCccccccccCCc---ccceecCCCCCCCee-ee---cCCCeEEcCCCCCCCCCccEEEEEeCCeEEEEEcCCCCCCC-c
Q psy17326 126 QPITRNDCVNAPC---QQLCLLSPSSSTGYT-CK---CIAGFRVTKDGRCVEEETPVLLVMKGSQIVDVSLKPGDKKE-T 197 (264)
Q Consensus 126 qp~~~npC~~~~C---shlCl~~p~~~~~~~-C~---Cp~G~~L~~~~tC~~~~~~~ll~~~~~~i~~i~~~~~~~~~-~ 197 (264)
+.=-+..++- ..|.+..+....|+- |. +..|........|.....|.+.+.......++..-.+..-| +
T Consensus 193 ---g~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~ 269 (331)
T PF07995_consen 193 ---GRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEY 269 (331)
T ss_dssp ---TEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGG
T ss_pred ---CcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccc
Confidence 1111222111 345555443211211 21 22222221122333333456666555555555432222211 1
Q ss_pred -ceeEeee--CceeEEeeeCCCCCCCceEEEecCCC-CcEEEEEECCCCEEEEEeC-CCeeec
Q psy17326 198 -PVLLVMK--GSQIVDVSLKPGDKSSGIITPVVGVE-NGLQVEFDKKAAMLYWLEG-TKKANE 255 (264)
Q Consensus 198 -~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~id~D~~~~~iYW~D~-~~~~~~ 255 (264)
-..++.+ +.++....++...........+.+.. .+++|++++. +.||-+|. ..+|.|
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD-G~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD-GALYVSDDSDGKIYR 331 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT-SEEEEEE-TTTTEEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC-CeEEEEECCCCeEeC
Confidence 1244444 45677667654321111222234555 6789999996 67888875 456654
No 39
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.47 E-value=11 Score=34.38 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=53.9
Q ss_pred CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeC--CEEEEEcCC
Q psy17326 13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFE--DTLYWTDRQ 90 (264)
Q Consensus 13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~--d~lYwtD~~ 90 (264)
.-..|..+.+++.++.||-+|.+.++|...+++........ ...+.-. .-..|..|++.. .++|.....
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~--------~~~~~~~-~G~GPRh~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP--------VDSIKVP-PGSGPRHLAFSPDGKYAYVVNEL 212 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE--------EEEEECS-TTSSEEEEEE-TTSSEEEEEETT
T ss_pred ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE--------eeccccc-cCCCCcEEEEcCCcCEEEEecCC
Confidence 34678999999999999999999999999999876521100 0012111 235788888854 499999988
Q ss_pred CCeEEEEEcc
Q psy17326 91 LNRVLSAHKF 100 (264)
Q Consensus 91 ~~~i~~~~k~ 100 (264)
.+.|...+..
T Consensus 213 s~~v~v~~~~ 222 (345)
T PF10282_consen 213 SNTVSVFDYD 222 (345)
T ss_dssp TTEEEEEEEE
T ss_pred CCcEEEEeec
Confidence 8877766544
No 40
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=91.36 E-value=5 Score=34.43 Aligned_cols=89 Identities=15% Similarity=0.030 Sum_probs=60.5
Q ss_pred CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCCCCe
Q psy17326 16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNR 93 (264)
Q Consensus 16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~~~~ 93 (264)
.|.++++++..+.+|.+....++|...+++...... .+.. -..|+++++ -+.+||-+....+.
T Consensus 208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~------------~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~ 272 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD------------YLLV---GQRVWQLAFTPDEKYLLTTNGVSND 272 (300)
T ss_pred CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE------------EEEe---CCCcceEEECCCCCEEEEEcCCCCe
Confidence 567888998888888887777778877775433222 2221 134677777 55688877666677
Q ss_pred EEEEEccCCceeEEEeccCCCceeEEE
Q psy17326 94 VLSAHKFRGKNQTVVSHLISQPLSIHV 120 (264)
Q Consensus 94 i~~~~k~~g~~~~~i~~~~~~p~~i~v 120 (264)
|...+..+++..+.+..+ ..|.+|.+
T Consensus 273 i~v~d~~~~~~~~~~~~~-~~~~~~~~ 298 (300)
T TIGR03866 273 VSVIDVAALKVIKSIKVG-RLPWGVVV 298 (300)
T ss_pred EEEEECCCCcEEEEEEcc-cccceeEe
Confidence 888888777766655443 67888875
No 41
>KOG4659|consensus
Probab=90.37 E-value=0.53 Score=49.61 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=62.6
Q ss_pred eCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE------------------------------------eEE
Q psy17326 11 STKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ------------------------------------DTL 54 (264)
Q Consensus 11 ~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~------------------------------------~~l 54 (264)
+-.+.||+.||||+..+.||-.|. +.|.+++.++.-|.. |.|
T Consensus 529 ~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~l 606 (1899)
T KOG4659|consen 529 DLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGAL 606 (1899)
T ss_pred heeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceE
Confidence 346789999999999999999995 678888877655532 788
Q ss_pred Eeeccc---ce-----------------------------------eEEeCCcccccceeeee-eCCEEEEEcCCCCeEE
Q psy17326 55 YWTDRQ---LN-----------------------------------RVVAGSHYLLHPHSLTI-FEDTLYWTDRQLNRVL 95 (264)
Q Consensus 55 fwtd~~---~~-----------------------------------~vl~~~~~l~~P~~l~v-~~d~lYwtD~~~~~i~ 95 (264)
|-++.. ++ .+.+.+-.+..|++|+| -.+.+|-+|...-+|.
T Consensus 607 yvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 607 YVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred EEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhh
Confidence 988753 11 12222234678999999 5679999999877665
Q ss_pred EE
Q psy17326 96 SA 97 (264)
Q Consensus 96 ~~ 97 (264)
.+
T Consensus 687 ~V 688 (1899)
T KOG4659|consen 687 KV 688 (1899)
T ss_pred hh
Confidence 43
No 42
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=88.39 E-value=2.9 Score=36.77 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=41.5
Q ss_pred CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCC-----cccccceeeee-eCCEEEE
Q psy17326 13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGS-----HYLLHPHSLTI-FEDTLYW 86 (264)
Q Consensus 13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~-----~~l~~P~~l~v-~~d~lYw 86 (264)
.+..|.||++|+.++.||-.....+.|...+.+|.-... + -+... ..+.+|-|||+ -++.||-
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~--~---------~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSS--L---------SLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEE--E---------E-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEE--E---------EeCCcccCcccccCCccEEEECCCCCEEE
Confidence 456799999999999999999999999999999985543 0 22221 13578999999 5568887
Q ss_pred EcC
Q psy17326 87 TDR 89 (264)
Q Consensus 87 tD~ 89 (264)
+..
T Consensus 238 vsE 240 (248)
T PF06977_consen 238 VSE 240 (248)
T ss_dssp EET
T ss_pred EcC
Confidence 764
No 43
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=86.00 E-value=0.72 Score=21.52 Aligned_cols=9 Identities=44% Similarity=1.283 Sum_probs=7.0
Q ss_pred eeecCCCeE
Q psy17326 153 TCKCIAGFR 161 (264)
Q Consensus 153 ~C~Cp~G~~ 161 (264)
+|.|+.||+
T Consensus 1 ~C~C~~G~~ 9 (13)
T PF12661_consen 1 TCQCPPGWT 9 (13)
T ss_dssp EEEE-TTEE
T ss_pred CccCcCCCc
Confidence 599999996
No 44
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=85.40 E-value=14 Score=34.33 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=64.5
Q ss_pred CccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCCC--
Q psy17326 16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQL-- 91 (264)
Q Consensus 16 ~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~~-- 91 (264)
.|.++++|+...++|=+|...++|...+..+..... + +..........|.++++ -+.++|-++..+
T Consensus 161 ~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~------~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 161 TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----G------SVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred CcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----c------ccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 699999999999999999999999999977665430 0 00000012467888888 677899999988
Q ss_pred CeEEEEEccCCceeEE--EeccCCCceeEEEe
Q psy17326 92 NRVLSAHKFRGKNQTV--VSHLISQPLSIHVH 121 (264)
Q Consensus 92 ~~i~~~~k~~g~~~~~--i~~~~~~p~~i~v~ 121 (264)
+.+..++-.++..... ..... .|+++.+-
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~ 261 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSG-APRGVAVD 261 (381)
T ss_pred ceEEEEeCCCceEEEeccccccC-CCCceeEC
Confidence 4777777655554432 22233 56666543
No 45
>KOG1520|consensus
Probab=85.06 E-value=1.7 Score=40.21 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=49.2
Q ss_pred CCCCccEEEEeCCCCeEEEEeCCC----CeEEEEecCCCceeEeEEEeecccc--eeEEeCCcccccceeeee--eCCEE
Q psy17326 13 KIYWPNGLTLDIATRRVYFAESKL----DFIDFCNYDGTSRQQDTLYWTDRQL--NRVVAGSHYLLHPHSLTI--FEDTL 84 (264)
Q Consensus 13 ~l~~P~gLaiD~~~~rLYW~D~~~----~~Ie~~~ldG~~r~~~~lfwtd~~~--~~vl~~~~~l~~P~~l~v--~~d~l 84 (264)
.+...|+|+||. ++.|||+|+.. ..+.-+-+.|.. .|+||==|... -+|+-. .+.-|.|+++ -++++
T Consensus 159 ~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~--~GRl~~YD~~tK~~~VLld--~L~F~NGlaLS~d~sfv 233 (376)
T KOG1520|consen 159 PFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDP--TGRLFRYDPSTKVTKVLLD--GLYFPNGLALSPDGSFV 233 (376)
T ss_pred eeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCC--ccceEEecCcccchhhhhh--cccccccccCCCCCCEE
Confidence 455689999999 99999999965 224444444421 13332222211 113333 3778888887 67788
Q ss_pred EEEcCCCCeEEEE
Q psy17326 85 YWTDRQLNRVLSA 97 (264)
Q Consensus 85 YwtD~~~~~i~~~ 97 (264)
-.++-...+|.+.
T Consensus 234 l~~Et~~~ri~ry 246 (376)
T KOG1520|consen 234 LVAETTTARIKRY 246 (376)
T ss_pred EEEeeccceeeee
Confidence 8888776655544
No 46
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=84.92 E-value=2.2 Score=23.99 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.5
Q ss_pred ccceeeee-eCCEEEEEcCCCCeEE
Q psy17326 72 LHPHSLTI-FEDTLYWTDRQLNRVL 95 (264)
Q Consensus 72 ~~P~~l~v-~~d~lYwtD~~~~~i~ 95 (264)
..|.||++ -++.||-+|...++|.
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEE
Confidence 57999999 7789999999888765
No 47
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=84.78 E-value=0.81 Score=27.72 Aligned_cols=24 Identities=29% Similarity=0.790 Sum_probs=16.5
Q ss_pred CCcc--cceecCCCCCCCeeeecCCCeEE
Q psy17326 136 APCQ--QLCLLSPSSSTGYTCKCIAGFRV 162 (264)
Q Consensus 136 ~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L 162 (264)
++|. -.|...+ ++++|.|+.||..
T Consensus 6 ~~C~~nA~C~~~~---~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 6 GGCHPNATCTNTG---GSYTCTCKPGYEG 31 (36)
T ss_dssp GGS-TTCEEEE-T---TSEEEEE-CEEEC
T ss_pred CCCCCCcEeecCC---CCEEeECCCCCcc
Confidence 3665 4788876 4899999999975
No 48
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=83.92 E-value=16 Score=34.00 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=63.9
Q ss_pred CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCC
Q psy17326 13 KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQ 90 (264)
Q Consensus 13 ~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~ 90 (264)
...+|+|+++...+.++|=.+...+.|..++........ .+..+ ..|.++++ .+.++|-++..
T Consensus 72 g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~-----------~~~vG----~~P~~~~~~~~~~~vYV~n~~ 136 (381)
T COG3391 72 GGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG-----------SIPVG----LGPVGLAVDPDGKYVYVANAG 136 (381)
T ss_pred CCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-----------Eeeec----cCCceEEECCCCCEEEEEecc
Confidence 347899999999999999999999999999954433222 01222 26666666 67799999994
Q ss_pred --CCeEEEEEccCCceeEEEeccCCCceeEEEe
Q psy17326 91 --LNRVLSAHKFRGKNQTVVSHLISQPLSIHVH 121 (264)
Q Consensus 91 --~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v~ 121 (264)
.+.+..++..+++....+..+. .|.++.+-
T Consensus 137 ~~~~~vsvid~~t~~~~~~~~vG~-~P~~~a~~ 168 (381)
T COG3391 137 NGNNTVSVIDAATNKVTATIPVGN-TPTGVAVD 168 (381)
T ss_pred cCCceEEEEeCCCCeEEEEEecCC-CcceEEEC
Confidence 5778888876666554433332 45566543
No 49
>KOG1219|consensus
Probab=82.88 E-value=1 Score=50.35 Aligned_cols=20 Identities=25% Similarity=0.748 Sum_probs=14.0
Q ss_pred ceecCCCCCCCeeeecCCCeEEc
Q psy17326 141 LCLLSPSSSTGYTCKCIAGFRVT 163 (264)
Q Consensus 141 lCl~~p~~~~~~~C~Cp~G~~L~ 163 (264)
.|++.+ +++.|.||.||+..
T Consensus 3916 tCip~~---n~f~CnC~~gyTG~ 3935 (4289)
T KOG1219|consen 3916 TCIPFY---NGFLCNCPNGYTGK 3935 (4289)
T ss_pred EEEecC---CCeeEeCCCCccCc
Confidence 455543 68999999998743
No 50
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=81.51 E-value=8.6 Score=35.03 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=36.6
Q ss_pred cccceeeeeeCCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEE
Q psy17326 71 LLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIH 119 (264)
Q Consensus 71 l~~P~~l~v~~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~ 119 (264)
+..|.+--.++++||..|+.++.+.+++..+|+...+ ..-...|.||.
T Consensus 202 LsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~V-a~vpG~~rGL~ 249 (335)
T TIGR03032 202 LSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPV-AFLPGFTRGLA 249 (335)
T ss_pred ccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEE-EECCCCCcccc
Confidence 7889999999999999999999999999877765544 22233444443
No 51
>KOG1219|consensus
Probab=81.14 E-value=1.1 Score=50.01 Aligned_cols=31 Identities=35% Similarity=0.999 Sum_probs=25.2
Q ss_pred ccccccCCccc--ceecCCCCCCCeeeecCCCeEE
Q psy17326 130 RNDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGFRV 162 (264)
Q Consensus 130 ~npC~~~~Csh--lCl~~p~~~~~~~C~Cp~G~~L 162 (264)
..+|..++|.| .|...|. ++|.|.||.-|..
T Consensus 3864 ~d~C~~npCqhgG~C~~~~~--ggy~CkCpsqysG 3896 (4289)
T KOG1219|consen 3864 TDPCNDNPCQHGGTCISQPK--GGYKCKCPSQYSG 3896 (4289)
T ss_pred ccccccCcccCCCEecCCCC--CceEEeCcccccC
Confidence 37788888886 8999884 6999999998863
No 52
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=79.48 E-value=45 Score=29.70 Aligned_cols=74 Identities=11% Similarity=-0.041 Sum_probs=50.3
Q ss_pred CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCCC
Q psy17326 14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQL 91 (264)
Q Consensus 14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~~ 91 (264)
...|+.|++++..+.||.+....+.|...++++...-+ .+.......+|..|++. +.+||-+....
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~------------~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~ 101 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT------------FAAESPLPGSPTHISTDHQGRFLFSASYNA 101 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE------------EeeeecCCCCceEEEECCCCCEEEEEEcCC
Confidence 36799999999999999998777888777776432222 12211112478888885 66899888776
Q ss_pred CeEEEEEc
Q psy17326 92 NRVLSAHK 99 (264)
Q Consensus 92 ~~i~~~~k 99 (264)
+.|...+.
T Consensus 102 ~~v~v~~~ 109 (330)
T PRK11028 102 NCVSVSPL 109 (330)
T ss_pred CeEEEEEE
Confidence 66655443
No 53
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.90 E-value=40 Score=30.08 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=51.7
Q ss_pred CCccEEEEeCCCCeEEEEeCCCCeEEEEecC--CCceeEeEEEeecccceeEEeCCcccccceeeeee--CCEEEEEcCC
Q psy17326 15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYD--GTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQ 90 (264)
Q Consensus 15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld--G~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~--~d~lYwtD~~ 90 (264)
..|.+|++|+.+++||=+....+.|...+++ |.-... + ..+. ...+|+++++. +.++|-++..
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~--~--------~~~~---~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP--I--------QIIE---GLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc--e--------eecc---CCCcccEeEeCCCCCEEEEeeCC
Confidence 4799999999999999888777888888775 322111 0 0111 23578888875 5699999998
Q ss_pred CCeEEEEEccC
Q psy17326 91 LNRVLSAHKFR 101 (264)
Q Consensus 91 ~~~i~~~~k~~ 101 (264)
.+.|...+..+
T Consensus 147 ~~~v~v~d~~~ 157 (330)
T PRK11028 147 EDRIRLFTLSD 157 (330)
T ss_pred CCEEEEEEECC
Confidence 88777666533
No 54
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=74.31 E-value=27 Score=32.94 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=65.4
Q ss_pred EEEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE-------eEEEeecccc----------eeEEeCC-
Q psy17326 7 STIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ-------DTLYWTDRQL----------NRVVAGS- 68 (264)
Q Consensus 7 ~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~-------~~lfwtd~~~----------~~vl~~~- 68 (264)
..|.+.++..|.||+.|+.+++||-+|...+.+ .--|--|+-. ...||.+-.. .......
T Consensus 231 ~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~--~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~ 308 (399)
T COG2133 231 SEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL--RGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVY 308 (399)
T ss_pred cceEEeccCCccceeecCCCCcEEEEecCCCcc--cCcccccccccCCccCCceeccCcccCccccCCCcccccccCCce
Confidence 346677999999999999999999999988655 2222222211 3456543210 0011000
Q ss_pred --cccccceeeeeeC--------CEEEEEcCCCCeEEEEEccCCcee---EEEec-cCCCceeEEEe
Q psy17326 69 --HYLLHPHSLTIFE--------DTLYWTDRQLNRVLSAHKFRGKNQ---TVVSH-LISQPLSIHVH 121 (264)
Q Consensus 69 --~~l~~P~~l~v~~--------d~lYwtD~~~~~i~~~~k~~g~~~---~~i~~-~~~~p~~i~v~ 121 (264)
....-|.||++|. +.+|-.......+.+.++..+... ..+.. .-.+|.++.+.
T Consensus 309 ~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~ 375 (399)
T COG2133 309 TWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVA 375 (399)
T ss_pred eeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEEC
Confidence 0124579999984 477777777666777555333121 12221 12467777665
No 55
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=72.15 E-value=71 Score=29.58 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=53.6
Q ss_pred CccE---EEEeCCCCeEEEEeCC-C--------CeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eC
Q psy17326 16 WPNG---LTLDIATRRVYFAESK-L--------DFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FE 81 (264)
Q Consensus 16 ~P~g---LaiD~~~~rLYW~D~~-~--------~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~ 81 (264)
.|.| ++++...++||-+-.+ . +.|..+|.....+.. ++..+ ..|.+|++ -+
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~-----------~i~vG----~~~~~iavS~Dg 310 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR-----------KIELG----HEIDSINVSQDA 310 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE-----------EEeCC----CceeeEEECCCC
Confidence 4666 9999999999985322 2 477777765443332 12222 46788888 45
Q ss_pred C-EEEEEcCCCCeEEEEEccCCceeEEE
Q psy17326 82 D-TLYWTDRQLNRVLSAHKFRGKNQTVV 108 (264)
Q Consensus 82 d-~lYwtD~~~~~i~~~~k~~g~~~~~i 108 (264)
. +||-+.+..+.|..++..+++....+
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 6 88999988888888888777766555
No 56
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.30 E-value=21 Score=21.14 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEE
Q psy17326 81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120 (264)
Q Consensus 81 ~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v 120 (264)
+++||-+++..+.|..++..++.....+.- -..|.+|.+
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 568999999988888888756655444433 355776653
No 57
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=67.30 E-value=83 Score=27.58 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=48.5
Q ss_pred CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeCC-EEEEEcCCCC
Q psy17326 14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFED-TLYWTDRQLN 92 (264)
Q Consensus 14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d-~lYwtD~~~~ 92 (264)
...++|||.|+.+++||=+.-....|...+++|.-.+. +--. ...-|-||++.++ .+.-++...+
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~------------i~l~--g~~D~EgI~y~g~~~~vl~~Er~~ 86 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRR------------IPLD--GFGDYEGITYLGNGRYVLSEERDQ 86 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEE------------EE-S--S-SSEEEEEE-STTEEEEEETTTT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEE------------EeCC--CCCCceeEEEECCCEEEEEEcCCC
Confidence 34589999999999999998889999999999876554 3221 2467899998765 4444565566
Q ss_pred eEEEEEc
Q psy17326 93 RVLSAHK 99 (264)
Q Consensus 93 ~i~~~~k 99 (264)
.++.+..
T Consensus 87 ~L~~~~~ 93 (248)
T PF06977_consen 87 RLYIFTI 93 (248)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 6665544
No 58
>KOG4289|consensus
Probab=65.27 E-value=4.7 Score=43.49 Aligned_cols=20 Identities=45% Similarity=1.183 Sum_probs=15.3
Q ss_pred ceecCCCCCCCeeeecCCCeE
Q psy17326 141 LCLLSPSSSTGYTCKCIAGFR 161 (264)
Q Consensus 141 lCl~~p~~~~~~~C~Cp~G~~ 161 (264)
.|+.+|.. .||+|.||.||.
T Consensus 1729 ~Cv~sp~a-~GY~C~C~~g~~ 1748 (2531)
T KOG4289|consen 1729 TCVRSPGA-HGYTCECPPGYT 1748 (2531)
T ss_pred eeecCCCC-CceeEECCCccc
Confidence 55555544 699999999985
No 59
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=64.12 E-value=51 Score=31.67 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=32.3
Q ss_pred EEEeCCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCce
Q psy17326 8 TIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR 49 (264)
Q Consensus 8 ~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r 49 (264)
.++-++|..|.+|++.+ .++||-++...++|.+++-++...
T Consensus 23 ~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~ 63 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEV 63 (454)
T ss_pred EEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCce
Confidence 34556899999999988 468999987778999888665443
No 60
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=62.60 E-value=1e+02 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=28.1
Q ss_pred CccEEEEeCCC-----CeEEEEeCCCCeEEEEecCC-CceeE
Q psy17326 16 WPNGLTLDIAT-----RRVYFAESKLDFIDFCNYDG-TSRQQ 51 (264)
Q Consensus 16 ~P~gLaiD~~~-----~rLYW~D~~~~~Ie~~~ldG-~~r~~ 51 (264)
..+.|+||... ..+|-+|+...-|-+.++.. +.+|+
T Consensus 62 ~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv 103 (287)
T PF03022_consen 62 FLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRV 103 (287)
T ss_dssp GEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEE
T ss_pred ccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEE
Confidence 45679999865 48999999999999999864 44554
No 61
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=58.29 E-value=3.5 Score=27.00 Aligned_cols=18 Identities=39% Similarity=0.990 Sum_probs=15.0
Q ss_pred eecCCCeEEcCCCCCCCC
Q psy17326 154 CKCIAGFRVTKDGRCVEE 171 (264)
Q Consensus 154 C~Cp~G~~L~~~~tC~~~ 171 (264)
|.|+.||.+..+++|++.
T Consensus 35 C~C~~G~v~~~~~~CV~~ 52 (55)
T PF01826_consen 35 CFCPPGYVRNDNGRCVPP 52 (55)
T ss_dssp EEETTTEEEETTSEEEEG
T ss_pred CCCCCCeeEcCCCCEEcH
Confidence 999999998877678754
No 62
>PF08290 Hep_core_N: Hepatitis core protein, putative zinc finger; InterPro: IPR013195 This entry represent a short region found at the N terminus of some viral capsid (HBcAg) proteins from various Hepatitis B virus (HBV), which is a major human pathogen. The conservation of four Cys residues suggests that this region acts as a zinc binding domain. Hepatitis virus is composed of an outer envelope of host-derived lipid containing the surface proteins, and an inner protein capsid that contains genomic DNA. The capsid is composed of a single polypeptide, HBcAg, also known as the core antigen. The capsid has a 5-helical fold, where two long helices form a hairpin that dimerises into a 4-helical bundle []; this fold is unusual for icosahedral viruses. The monomer fold is stabilised by a hydrophobic core that is highly conserved among human viral variants. The capsid is assembled from dimers via interactions involving a highly conserved arginine-rich region near the C terminus. This viral capsid acts as a core antigen, the major immunodominant region lying at the tips of the alpha-helical hairpins that form spikes on the capsid surface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005198 structural molecule activity, 0009405 pathogenesis
Probab=55.38 E-value=6.4 Score=21.98 Aligned_cols=14 Identities=36% Similarity=0.940 Sum_probs=10.8
Q ss_pred cceecCCCCCCCeeeecCCCe
Q psy17326 140 QLCLLSPSSSTGYTCKCIAGF 160 (264)
Q Consensus 140 hlCl~~p~~~~~~~C~Cp~G~ 160 (264)
|+|+. -+|.||++.
T Consensus 5 ~lcli-------iscscpt~q 18 (27)
T PF08290_consen 5 HLCLI-------ISCSCPTVQ 18 (27)
T ss_pred eeeee-------eeccCCcch
Confidence 78886 469999874
No 63
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=54.36 E-value=52 Score=23.92 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=24.1
Q ss_pred cccceeeee--eCCEEEEEcCCCCeEEEEEc
Q psy17326 71 LLHPHSLTI--FEDTLYWTDRQLNRVLSAHK 99 (264)
Q Consensus 71 l~~P~~l~v--~~d~lYwtD~~~~~i~~~~k 99 (264)
+..|.||++ -+.+||-++...+.|+...+
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 789999999 46899999998888776554
No 64
>PRK04043 tolB translocation protein TolB; Provisional
Probab=53.19 E-value=79 Score=29.85 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=43.9
Q ss_pred eCCCCeEEEEeC-C--CCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCE-EEEEcCC--CCeE
Q psy17326 23 DIATRRVYFAES-K--LDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDT-LYWTDRQ--LNRV 94 (264)
Q Consensus 23 D~~~~rLYW~D~-~--~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~-lYwtD~~--~~~i 94 (264)
++.++.+|.+.. + ...|..+++||.+.++ +..+. .. ..... -+++ +|.+... ...|
T Consensus 152 ~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~------------~~~~~-~~---~~p~wSpDG~~~i~y~s~~~~~~~I 215 (419)
T PRK04043 152 DWMKRKVVFSKYTGPKKSNIVLADYTLTYQKV------------IVKGG-LN---IFPKWANKEQTAFYYTSYGERKPTL 215 (419)
T ss_pred CceeeEEEEEEccCCCcceEEEECCCCCceeE------------EccCC-Ce---EeEEECCCCCcEEEEEEccCCCCEE
Confidence 566788999873 3 5799999999999887 55542 11 11222 3454 6665544 3468
Q ss_pred EEEEccCCceeEE
Q psy17326 95 LSAHKFRGKNQTV 107 (264)
Q Consensus 95 ~~~~k~~g~~~~~ 107 (264)
+..+..+|....+
T Consensus 216 yv~dl~tg~~~~l 228 (419)
T PRK04043 216 YKYNLYTGKKEKI 228 (419)
T ss_pred EEEECCCCcEEEE
Confidence 8888766655443
No 65
>PRK04792 tolB translocation protein TolB; Provisional
Probab=52.90 E-value=1.8e+02 Score=27.48 Aligned_cols=88 Identities=7% Similarity=-0.078 Sum_probs=49.2
Q ss_pred CCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCC--CCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee
Q psy17326 2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESK--LDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI 79 (264)
Q Consensus 2 DGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~--~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v 79 (264)
||.+.+.|.... ......+..+..++|+|+... ...|...++++..++. +.... ........+-
T Consensus 206 dG~~~~~l~~~~-~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~------------lt~~~-g~~~~~~wSP 271 (448)
T PRK04792 206 DGYNEQMLLRSP-EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK------------VTSFP-GINGAPRFSP 271 (448)
T ss_pred CCCCceEeecCC-CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE------------ecCCC-CCcCCeeECC
Confidence 677766665532 223456788888999998543 3478899988776654 32211 1111122222
Q ss_pred eCCEEEEEcCCCC--eEEEEEccCCc
Q psy17326 80 FEDTLYWTDRQLN--RVLSAHKFRGK 103 (264)
Q Consensus 80 ~~d~lYwtD~~~~--~i~~~~k~~g~ 103 (264)
-+++|+++....+ .|+.++..+|.
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 4567777533322 46666665443
No 66
>PHA02887 EGF-like protein; Provisional
Probab=51.12 E-value=11 Score=29.11 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=17.6
Q ss_pred ceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326 141 LCLLSPSSSTGYTCKCIAGFRVTKDGRCVE 170 (264)
Q Consensus 141 lCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~ 170 (264)
.|...+. -....|.|+.||. +.+|..
T Consensus 98 ~C~yI~d-L~epsCrC~~GYt---G~RCE~ 123 (126)
T PHA02887 98 ECMNIID-LDEKFCICNKGYT---GIRCDE 123 (126)
T ss_pred EEEcccc-CCCceeECCCCcc---cCCCCc
Confidence 4444443 2579999999996 557864
No 67
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=51.02 E-value=9.4 Score=29.99 Aligned_cols=34 Identities=24% Similarity=0.686 Sum_probs=23.3
Q ss_pred cccccccCCcccceecCCCCCCCeeeecCCCeEEcCCCCCCC
Q psy17326 129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE 170 (264)
Q Consensus 129 ~~npC~~~~CshlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~~ 170 (264)
..+-|-++.|-. .+. -+.+.|.|+.||. +.+|+.
T Consensus 49 y~~YClHG~C~y----I~d-l~~~~CrC~~GYt---GeRCEh 82 (139)
T PHA03099 49 GDGYCLHGDCIH----ARD-IDGMYCRCSHGYT---GIRCQH 82 (139)
T ss_pred hCCEeECCEEEe----ecc-CCCceeECCCCcc---cccccc
Confidence 456677765543 343 2579999999996 568964
No 68
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=49.82 E-value=1.6e+02 Score=26.67 Aligned_cols=87 Identities=13% Similarity=0.188 Sum_probs=59.2
Q ss_pred CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE--------------------eEEEeeccc-c-------e---
Q psy17326 14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ--------------------DTLYWTDRQ-L-------N--- 62 (264)
Q Consensus 14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~--------------------~~lfwtd~~-~-------~--- 62 (264)
-..|.|+.+++. +....+|... .|-+.+-.--..+. |+|.+|.+. . +
T Consensus 103 Ga~Phgiv~gpd-g~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i 180 (353)
T COG4257 103 GASPHGIVVGPD-GSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVI 180 (353)
T ss_pred CCCCceEEECCC-CCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCce
Confidence 457999999985 5566788766 67666542111111 677666542 1 1
Q ss_pred eEEeCCcccccceeeee-eCCEEEEEcCCCCeEEEEEccCCc
Q psy17326 63 RVVAGSHYLLHPHSLTI-FEDTLYWTDRQLNRVLSAHKFRGK 103 (264)
Q Consensus 63 ~vl~~~~~l~~P~~l~v-~~d~lYwtD~~~~~i~~~~k~~g~ 103 (264)
+|+... +-.-|+||.+ -++.||++....+.|-+++.++|.
T Consensus 181 ~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 181 SVFPAP-QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred eeeccC-CCCCCcceEECCCCcEEEEeccccceEEcccccCC
Confidence 244433 3467999998 677999999999999999998884
No 69
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=49.56 E-value=18 Score=23.27 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=20.1
Q ss_pred CCCCCccEEEEeCCCCeEEEEeCC
Q psy17326 12 TKIYWPNGLTLDIATRRVYFAESK 35 (264)
Q Consensus 12 ~~l~~P~gLaiD~~~~rLYW~D~~ 35 (264)
..-..|.||.+|..++.|.|+-..
T Consensus 8 ~~~~LP~gLs~d~~tG~isGtp~~ 31 (49)
T PF05345_consen 8 TGGGLPSGLSLDPSTGTISGTPTS 31 (49)
T ss_pred CCCCCCCcEEEeCCCCEEEeecCC
Confidence 356789999999999999998543
No 70
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=47.92 E-value=2.3e+02 Score=26.23 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=52.0
Q ss_pred CCccEEEEeCCCCeEEEEeC---------CCCeEEEEecCCCceeEeEEEeecccceeEEeCCc----ccccc--eeeee
Q psy17326 15 YWPNGLTLDIATRRVYFAES---------KLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSH----YLLHP--HSLTI 79 (264)
Q Consensus 15 ~~P~gLaiD~~~~rLYW~D~---------~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~----~l~~P--~~l~v 79 (264)
..|+|+ +.+..+.||=+.. ..+.|+..|..-..... ++-.... ...+| |+++-
T Consensus 47 ~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-----------~i~~p~~p~~~~~~~~~~~~ls~ 114 (352)
T TIGR02658 47 FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-----------DIELPEGPRFLVGTYPWMTSLTP 114 (352)
T ss_pred CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-----------EEccCCCchhhccCccceEEECC
Confidence 589997 9999999999999 67788888765433211 0221110 12334 44444
Q ss_pred eCCEEEEEcCC-CCeEEEEEccCCceeE
Q psy17326 80 FEDTLYWTDRQ-LNRVLSAHKFRGKNQT 106 (264)
Q Consensus 80 ~~d~lYwtD~~-~~~i~~~~k~~g~~~~ 106 (264)
-+.+||-+.+. ...+-.++..+++-..
T Consensus 115 dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 115 DNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 67799988887 7778778876665443
No 71
>PRK03629 tolB translocation protein TolB; Provisional
Probab=46.26 E-value=2.6e+02 Score=26.28 Aligned_cols=88 Identities=7% Similarity=-0.044 Sum_probs=53.7
Q ss_pred CCCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeC--CCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeee
Q psy17326 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAES--KLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLT 78 (264)
Q Consensus 1 mDGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~--~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~ 78 (264)
.||.+++.|.... ......+..+.+++|.|+.. ....|...++++..++. +.... .+..+++
T Consensus 186 ~dg~~~~~lt~~~-~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~------------l~~~~---~~~~~~~ 249 (429)
T PRK03629 186 YDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ------------VASFP---RHNGAPA 249 (429)
T ss_pred CCCCCCEEeecCC-CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE------------ccCCC---CCcCCeE
Confidence 3788888776532 34567788888889988743 34578888888766654 33221 1222233
Q ss_pred e--eCCEEEEEcCCCC--eEEEEEccCCce
Q psy17326 79 I--FEDTLYWTDRQLN--RVLSAHKFRGKN 104 (264)
Q Consensus 79 v--~~d~lYwtD~~~~--~i~~~~k~~g~~ 104 (264)
+ -+.+|+++....+ .|+.++..+|..
T Consensus 250 ~SPDG~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 250 FSPDGSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 3 5668888744332 477777655543
No 72
>PF02425 GBP_PSP: Paralytic/GBP/PSP peptide; InterPro: IPR003463 This family includes insect peptides that are short (23 amino acids) and contain 1 disulphide bridge. The family includes growth-blocking peptide (GBP) of Pseudaletia separata (Oriental armyworm) and the paralytic peptides from Manduca sexta (Tobacco hawkmoth), Heliothis virescens (Noctuid moth), and Spodoptera exigua (Beet armyworm) [] as well as plasmatocyte-spreading peptide (PSP1) []. These peptides function to halt metamorphosis from larvae to pupae.; PDB: 1V28_A 2DJC_A 2EQQ_A 2EQH_A 2EQT_A 1BQF_A 2DJ9_A 1HRL_A 1IRR_A 1B5N_A ....
Probab=45.41 E-value=8.2 Score=20.55 Aligned_cols=16 Identities=44% Similarity=0.949 Sum_probs=13.0
Q ss_pred ecCCCeEEcCCCCCCC
Q psy17326 155 KCIAGFRVTKDGRCVE 170 (264)
Q Consensus 155 ~Cp~G~~L~~~~tC~~ 170 (264)
.|..||.-.++++|.+
T Consensus 6 gc~~gy~rtadgrckp 21 (23)
T PF02425_consen 6 GCATGYMRTADGRCKP 21 (23)
T ss_dssp SSSTTEEEETTTEEEE
T ss_pred cccccceEcCCccccC
Confidence 3889998888888875
No 73
>KOG4499|consensus
Probab=42.39 E-value=56 Score=28.81 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=35.8
Q ss_pred CCcEEEEeC------CCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCce
Q psy17326 4 SSRSTIIST------KIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR 49 (264)
Q Consensus 4 s~r~~iv~~------~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r 49 (264)
|+|++|++- +-.-|.|++||- ++.||-+-...++|.+.++....+
T Consensus 195 snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 195 SNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred cCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcE
Confidence 788888862 344699999997 789999998889999988865444
No 74
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=41.75 E-value=1.4e+02 Score=22.11 Aligned_cols=28 Identities=25% Similarity=0.793 Sum_probs=18.3
Q ss_pred cccccc-CCcc--cceecCCCCCCCeeeecCCCeE
Q psy17326 130 RNDCVN-APCQ--QLCLLSPSSSTGYTCKCIAGFR 161 (264)
Q Consensus 130 ~npC~~-~~Cs--hlCl~~p~~~~~~~C~Cp~G~~ 161 (264)
..+|.. +.|- .+|... ....|.|+.||+
T Consensus 77 ~d~Cd~y~~CG~~g~C~~~----~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 77 KDQCDVYGFCGPNGICNSN----NSPKCSCLPGFE 107 (110)
T ss_pred ccCCCCccccCCccEeCCC----CCCceECCCCcC
Confidence 356764 4554 477543 356799999996
No 75
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=40.76 E-value=2.6e+02 Score=24.82 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=28.9
Q ss_pred cccceeeeeeCCEEEEEcCCCCeEEEEEccCCceeEEE
Q psy17326 71 LLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVV 108 (264)
Q Consensus 71 l~~P~~l~v~~d~lYwtD~~~~~i~~~~k~~g~~~~~i 108 (264)
+..-.-|...+++||---|.+..|.+++..+|.-...+
T Consensus 174 v~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 174 VSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp ---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred CCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 34445577789999999999999999999999866554
No 76
>KOG3514|consensus
Probab=40.22 E-value=2.3e+02 Score=30.47 Aligned_cols=35 Identities=29% Similarity=0.673 Sum_probs=21.3
Q ss_pred cccccccCCcccceecCCCCCCCeeeecCC-CeEEcCCCCCCCCC
Q psy17326 129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCIA-GFRVTKDGRCVEEE 172 (264)
Q Consensus 129 ~~npC~~~~CshlCl~~p~~~~~~~C~Cp~-G~~L~~~~tC~~~~ 172 (264)
..|||.|++ .|.-. =+.+.|.|.. || .+++|+...
T Consensus 627 ~~nPC~N~g---~C~eg---wNrfiCDCs~T~~---~G~~CerE~ 662 (1591)
T KOG3514|consen 627 ESNPCQNGG---KCSEG---WNRFICDCSGTGF---EGRTCEREA 662 (1591)
T ss_pred CCCcccCCC---Ccccc---ccccccccccCcc---cCcccccee
Confidence 456666642 34432 2578999974 44 377998653
No 77
>PF04942 CC: CC domain; InterPro: IPR007026 This short domain contains four conserved cysteines that are probably required for the formation of two disulphide bonds. The domain is only found in proteins from Caenorhabditis species. The domain is named after the characteristic CC motif.
Probab=38.56 E-value=25 Score=21.20 Aligned_cols=15 Identities=27% Similarity=0.749 Sum_probs=11.5
Q ss_pred ecCCCeEEcCCCCCC
Q psy17326 155 KCIAGFRVTKDGRCV 169 (264)
Q Consensus 155 ~Cp~G~~L~~~~tC~ 169 (264)
+||.|+.+..+..|-
T Consensus 19 ~CP~G~~~i~g~~CC 33 (36)
T PF04942_consen 19 VCPSGYTVITGNGCC 33 (36)
T ss_pred cCCCCCEEECCCccC
Confidence 599999998755554
No 78
>KOG4260|consensus
Probab=36.83 E-value=55 Score=29.24 Aligned_cols=31 Identities=32% Similarity=0.868 Sum_probs=23.4
Q ss_pred cccccc--CCcc--cceecCCCCCCCeeeecCCCeEEc
Q psy17326 130 RNDCVN--APCQ--QLCLLSPSSSTGYTCKCIAGFRVT 163 (264)
Q Consensus 130 ~npC~~--~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~ 163 (264)
.|.|++ ..|+ ++|+.+. ++|+|.|.+||+..
T Consensus 236 vnEC~~ep~~c~~~qfCvNte---GSf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 236 VNECQNEPAPCKAHQFCVNTE---GSFKCEDKEGYKKG 270 (350)
T ss_pred HHHHhcCCCCCChhheeecCC---CceEecccccccCC
Confidence 466764 3676 7999974 68999998888753
No 79
>PRK05137 tolB translocation protein TolB; Provisional
Probab=34.19 E-value=2.8e+02 Score=25.90 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=39.4
Q ss_pred CCCCeEEEEeCC------CCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCC--CCe
Q psy17326 24 IATRRVYFAESK------LDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQ--LNR 93 (264)
Q Consensus 24 ~~~~rLYW~D~~------~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~--~~~ 93 (264)
+...||+|+... ...|..++++|.+.+. +..+...+ ...++ -+++|+++... ...
T Consensus 163 ~f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~------------lt~~~~~v---~~p~wSpDG~~lay~s~~~g~~~ 227 (435)
T PRK05137 163 YFDTRIVYVAESGPKNKRIKRLAIMDQDGANVRY------------LTDGSSLV---LTPRFSPNRQEITYMSYANGRPR 227 (435)
T ss_pred cCCCeEEEEEeeCCCCCcceEEEEECCCCCCcEE------------EecCCCCe---EeeEECCCCCEEEEEEecCCCCE
Confidence 456788887543 3489999999999876 44332111 22222 45677776543 236
Q ss_pred EEEEEccCCce
Q psy17326 94 VLSAHKFRGKN 104 (264)
Q Consensus 94 i~~~~k~~g~~ 104 (264)
|+..+..+|..
T Consensus 228 i~~~dl~~g~~ 238 (435)
T PRK05137 228 VYLLDLETGQR 238 (435)
T ss_pred EEEEECCCCcE
Confidence 77777655543
No 80
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=33.85 E-value=40 Score=31.81 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=43.6
Q ss_pred CCCCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE---eEEEeecc--c-----ceeEEeCCcccccceeeeeeC
Q psy17326 12 TKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ---DTLYWTDR--Q-----LNRVVAGSHYLLHPHSLTIFE 81 (264)
Q Consensus 12 ~~l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~---~~lfwtd~--~-----~~~vl~~~~~l~~P~~l~v~~ 81 (264)
.++..|-+++..+.. ++--+....+.+..+...+.-... ....++.- + +.+.+.+ .+..||+++..+
T Consensus 64 ~gLe~p~~~~~lP~G-~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~--~~~~~~~~a~~~ 140 (399)
T COG2133 64 QGLEHPWGLARLPDG-VLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQ--GRLVYFGISEPG 140 (399)
T ss_pred ccccCchhheecCCc-eEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccc--cceeeeEEEeec
Confidence 368899999999877 666666555777766654432211 11111111 0 1223333 367889999988
Q ss_pred CEEEEEc
Q psy17326 82 DTLYWTD 88 (264)
Q Consensus 82 d~lYwtD 88 (264)
+.+|-..
T Consensus 141 ~~~~~~n 147 (399)
T COG2133 141 GGLYVAN 147 (399)
T ss_pred CCceEEE
Confidence 8887653
No 81
>smart00051 DSL delta serrate ligand.
Probab=28.94 E-value=38 Score=23.08 Aligned_cols=25 Identities=28% Similarity=0.748 Sum_probs=14.9
Q ss_pred CcccceecCCCCCCCeee------ecCCCeE
Q psy17326 137 PCQQLCLLSPSSSTGYTC------KCIAGFR 161 (264)
Q Consensus 137 ~CshlCl~~p~~~~~~~C------~Cp~G~~ 161 (264)
.|+.+|.+.....+.++| .|+.|++
T Consensus 29 ~C~~~C~~~~d~~~~~~Cd~~G~~~C~~Gw~ 59 (63)
T smart00051 29 GCNKFCRPRDDFFGHYTCDENGNKGCLEGWM 59 (63)
T ss_pred ccCCEeCcCccccCCccCCcCCCEecCCCCc
Confidence 789999874221234554 4777664
No 82
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=28.91 E-value=78 Score=30.43 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=26.5
Q ss_pred cEEEEeCCCCCccEEEEeCCCCeEEEEeCCCC
Q psy17326 6 RSTIISTKIYWPNGLTLDIATRRVYFAESKLD 37 (264)
Q Consensus 6 r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~~~ 37 (264)
+..|...++..|-||++|+ +++||.+|.+.+
T Consensus 221 ~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 221 VSHIFTYGHRNPQGLAFTP-DGTLYASEQGPN 251 (454)
T ss_pred cceEEEEeccccceeEECC-CCCEEEEecCCC
Confidence 3457788999999999999 799999998765
No 83
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=28.41 E-value=57 Score=18.98 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=9.5
Q ss_pred CeeeecCCCeE
Q psy17326 151 GYTCKCIAGFR 161 (264)
Q Consensus 151 ~~~C~Cp~G~~ 161 (264)
..+|.|..||.
T Consensus 18 ~g~C~C~~g~~ 28 (32)
T PF07974_consen 18 CGRCVCDSGYT 28 (32)
T ss_pred CCEEECCCCCc
Confidence 47899999986
No 84
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=28.37 E-value=3.5e+02 Score=24.82 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=49.0
Q ss_pred CCCeEEEEeCCC-------------CeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee-------eCCEE
Q psy17326 25 ATRRVYFAESKL-------------DFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI-------FEDTL 84 (264)
Q Consensus 25 ~~~rLYW~D~~~-------------~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v-------~~d~l 84 (264)
..++||-+-++. +.|..-+++|.-.+. +- +...|..|+||++ |.+.|
T Consensus 197 ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r------------~a-s~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 197 LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRR------------VA-SSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEE------------ec-cCCcccCCceeeeChhhhCCCCCCe
Confidence 368888765542 467777777776554 43 3346889999998 55677
Q ss_pred EEEcCCCCeEEEEEccCCceeEEEecc
Q psy17326 85 YWTDRQLNRVLSAHKFRGKNQTVVSHL 111 (264)
Q Consensus 85 YwtD~~~~~i~~~~k~~g~~~~~i~~~ 111 (264)
.--.-..++|-..+..+|...-.+...
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCC
Confidence 777777777776666666655444433
No 85
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=28.15 E-value=47 Score=21.18 Aligned_cols=17 Identities=35% Similarity=0.962 Sum_probs=12.1
Q ss_pred CeeeecCCCeEEcCCCCC
Q psy17326 151 GYTCKCIAGFRVTKDGRC 168 (264)
Q Consensus 151 ~~~C~Cp~G~~L~~~~tC 168 (264)
..+|.|+.||... +++|
T Consensus 36 ~g~C~C~~g~~~~-~~~C 52 (52)
T PF01683_consen 36 NGRCQCPPGYVEV-GGRC 52 (52)
T ss_pred CCEeECCCCCEec-CCCC
Confidence 3589999998754 3444
No 86
>KOG4649|consensus
Probab=26.43 E-value=1.6e+02 Score=26.54 Aligned_cols=41 Identities=10% Similarity=-0.046 Sum_probs=29.3
Q ss_pred cEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeE-----eEEEeec
Q psy17326 18 NGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ-----DTLYWTD 58 (264)
Q Consensus 18 ~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~-----~~lfwtd 58 (264)
.=++||+.+++|||-.....+||..-+==.+..+ |.||+-+
T Consensus 34 ~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 34 IVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred eEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEE
Confidence 4479999999999999888999976654223322 5666544
No 87
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=25.91 E-value=82 Score=28.51 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=31.0
Q ss_pred CccEEEEeCCCCeEEEEeCCC------CeEEEEecCCCceeE
Q psy17326 16 WPNGLTLDIATRRVYFAESKL------DFIDFCNYDGTSRQQ 51 (264)
Q Consensus 16 ~P~gLaiD~~~~rLYW~D~~~------~~Ie~~~ldG~~r~~ 51 (264)
.++||++ ...+.+||++.+. ..|.+.+.+|.-.+.
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~ 126 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRR 126 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccce
Confidence 7889999 6789999999999 999999999887554
No 88
>PRK04043 tolB translocation protein TolB; Provisional
Probab=25.66 E-value=5.7e+02 Score=24.05 Aligned_cols=49 Identities=6% Similarity=-0.030 Sum_probs=30.6
Q ss_pred CCCCCcEEEEeCCCCCccEEEEeCCCCe-EEEEeCC--CCeEEEEecCCCceeE
Q psy17326 1 MDESSRSTIISTKIYWPNGLTLDIATRR-VYFAESK--LDFIDFCNYDGTSRQQ 51 (264)
Q Consensus 1 mDGs~r~~iv~~~l~~P~gLaiD~~~~r-LYW~D~~--~~~Ie~~~ldG~~r~~ 51 (264)
.||.+.+++...+ .-..-...+..++ +|.+... ...|...++.+..++.
T Consensus 176 ~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~ 227 (419)
T PRK04043 176 YTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK 227 (419)
T ss_pred CCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE
Confidence 3788888776653 1123344555564 6665443 4678999988777665
No 89
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=24.24 E-value=5.6e+02 Score=23.52 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=42.4
Q ss_pred CccEEEEeCC--CCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeC----C--cccccceeeeeeCCEEEEE
Q psy17326 16 WPNGLTLDIA--TRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAG----S--HYLLHPHSLTIFEDTLYWT 87 (264)
Q Consensus 16 ~P~gLaiD~~--~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~----~--~~l~~P~~l~v~~d~lYwt 87 (264)
--.||||-.. ..+||=+|...++|++- |++-++. .+.+ . ..-.-||.|...+++||-+
T Consensus 139 vYkGLAi~~~~~~~~LYaadF~~g~IDVF--d~~f~~~------------~~~g~F~DP~iPagyAPFnIqnig~~lyVt 204 (336)
T TIGR03118 139 VYKGLAVGPTGGGDYLYAANFRQGRIDVF--KGSFRPP------------PLPGSFIDPALPAGYAPFNVQNLGGTLYVT 204 (336)
T ss_pred eeeeeEEeecCCCceEEEeccCCCceEEe--cCccccc------------cCCCCccCCCCCCCCCCcceEEECCeEEEE
Confidence 3478888754 68999999999999875 5655543 2211 1 0124699999999999987
Q ss_pred cCC
Q psy17326 88 DRQ 90 (264)
Q Consensus 88 D~~ 90 (264)
=.+
T Consensus 205 YA~ 207 (336)
T TIGR03118 205 YAQ 207 (336)
T ss_pred EEe
Confidence 444
No 90
>KOG4289|consensus
Probab=24.05 E-value=81 Score=34.82 Aligned_cols=34 Identities=29% Similarity=0.793 Sum_probs=24.7
Q ss_pred ccccccCCcc--cceecCCCCCCCeeeecCCCeEEcCCCCCC
Q psy17326 130 RNDCVNAPCQ--QLCLLSPSSSTGYTCKCIAGFRVTKDGRCV 169 (264)
Q Consensus 130 ~npC~~~~Cs--hlCl~~p~~~~~~~C~Cp~G~~L~~~~tC~ 169 (264)
.|-|..+.|+ ..|+..= +++.|.||.|+- ++.|.
T Consensus 1501 k~fCdsg~C~n~g~CvnrW---g~~~C~CP~~fg---gk~c~ 1536 (2531)
T KOG4289|consen 1501 KNFCDSGQCSNGGTCVNRW---GGFSCECPLGFG---GKGCC 1536 (2531)
T ss_pred hcccCCCccCCCCeeeccc---CcEeecCccccC---Ccchh
Confidence 4667777786 5888764 689999999983 34454
No 91
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=23.58 E-value=4.4e+02 Score=22.04 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=47.0
Q ss_pred CCCccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCCC
Q psy17326 14 IYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQL 91 (264)
Q Consensus 14 l~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~~ 91 (264)
-..|.++++++..+.||-+....+.|...+.++..... .+.. ...|..+++ -++.+|-+....
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~------------~~~~---~~~~~~~~~~~~g~~l~~~~~~~ 94 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG------------TLPS---GPDPELFALHPNGKILYIANEDD 94 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE------------eccC---CCCccEEEECCCCCEEEEEcCCC
Confidence 34588999998888888888777888888877543322 2222 123444555 345677766555
Q ss_pred CeEEEEEccCCc
Q psy17326 92 NRVLSAHKFRGK 103 (264)
Q Consensus 92 ~~i~~~~k~~g~ 103 (264)
+.+...+..++.
T Consensus 95 ~~l~~~d~~~~~ 106 (300)
T TIGR03866 95 NLVTVIDIETRK 106 (300)
T ss_pred CeEEEEECCCCe
Confidence 666666654443
No 92
>PRK04922 tolB translocation protein TolB; Provisional
Probab=22.85 E-value=6.3e+02 Score=23.56 Aligned_cols=49 Identities=10% Similarity=0.016 Sum_probs=31.5
Q ss_pred CCCCcEEEEeCCCCCccEEEEeCCCCeEEEEeCC--CCeEEEEecCCCceeE
Q psy17326 2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESK--LDFIDFCNYDGTSRQQ 51 (264)
Q Consensus 2 DGs~r~~iv~~~l~~P~gLaiD~~~~rLYW~D~~--~~~Ie~~~ldG~~r~~ 51 (264)
||.+.+.|...+ ....+.+..+.+++|+++... ...|...++++..++.
T Consensus 192 ~g~~~~~lt~~~-~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~ 242 (433)
T PRK04922 192 DGYNPQTILRSA-EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL 242 (433)
T ss_pred CCCCceEeecCC-CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE
Confidence 466666655421 223455777778889988643 3468888888776654
No 93
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=22.66 E-value=6.5e+02 Score=23.66 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=40.2
Q ss_pred CCccEEEEeCCCCeEEEEeCCCCeEEEEecC--C-CceeEeEEEeecccceeEEe--CCcccccceeeeeeC-----CEE
Q psy17326 15 YWPNGLTLDIATRRVYFAESKLDFIDFCNYD--G-TSRQQDTLYWTDRQLNRVVA--GSHYLLHPHSLTIFE-----DTL 84 (264)
Q Consensus 15 ~~P~gLaiD~~~~rLYW~D~~~~~Ie~~~ld--G-~~r~~~~lfwtd~~~~~vl~--~~~~l~~P~~l~v~~-----d~l 84 (264)
..|+|+++|-..++||-.+... -|.+...+ + ..++. +.. +.....-.-||+++. +||
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~-GIW~y~Aep~~~~~~~~------------v~~~~g~~l~aDvEGlaly~~~~g~gYL 274 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDV-GIWRYDAEPEGGNDRTL------------VASADGDGLVADVEGLALYYGSDGKGYL 274 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTT-EEEEEESSCCC-S--EE------------EEEBSSSSB-S-EEEEEEEE-CCC-EEE
T ss_pred CcceEEEEecccCCEEEecCcc-EEEEEecCCCCCCccee------------eecccccccccCccceEEEecCCCCeEE
Confidence 4799999999999999999864 57777776 3 33443 321 211223567888752 356
Q ss_pred EEEcCCCCe
Q psy17326 85 YWTDRQLNR 93 (264)
Q Consensus 85 YwtD~~~~~ 93 (264)
.-++...++
T Consensus 275 ivSsQG~~s 283 (381)
T PF02333_consen 275 IVSSQGDNS 283 (381)
T ss_dssp EEEEGGGTE
T ss_pred EEEcCCCCe
Confidence 666555443
No 94
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=22.65 E-value=4.7e+02 Score=24.15 Aligned_cols=90 Identities=6% Similarity=-0.041 Sum_probs=47.6
Q ss_pred CCccEEEEeCCCCeEEEEe----CCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEc
Q psy17326 15 YWPNGLTLDIATRRVYFAE----SKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTD 88 (264)
Q Consensus 15 ~~P~gLaiD~~~~rLYW~D----~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD 88 (264)
+.|-.+..++.++ --|+| ...+.|..+|..--.... -+... .-..+..+.+ -++++|.+.
T Consensus 269 G~glFi~thP~s~-~vwvd~~~~~~~~~v~viD~~tl~~~~------------~i~~~-~~~~~~h~ef~~dG~~v~vS~ 334 (369)
T PF02239_consen 269 GGGLFIKTHPDSR-YVWVDTFLNPDADTVQVIDKKTLKVVK------------TITPG-PGKRVVHMEFNPDGKEVWVSV 334 (369)
T ss_dssp SSS--EE--TT-S-EEEEE-TT-SSHT-EEEEECCGTEEEE-------------HHHH-HT--EEEEEE-TTSSEEEEEE
T ss_pred CCcceeecCCCCc-cEEeeccCCCCCceEEEEECcCcceeE------------EEecc-CCCcEeccEECCCCCEEEEEE
Confidence 4456667766554 44777 334678777766442211 11100 0011444444 678999999
Q ss_pred CCCC-eEEEEEccCCceeEEEeccCCCceeEEE
Q psy17326 89 RQLN-RVLSAHKFRGKNQTVVSHLISQPLSIHV 120 (264)
Q Consensus 89 ~~~~-~i~~~~k~~g~~~~~i~~~~~~p~~i~v 120 (264)
|..+ .|...+-.+.+....+. ...|.|+--
T Consensus 335 ~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G~f~ 365 (369)
T PF02239_consen 335 WDGNGAIVVYDAKTLKEKKRIP--VPTPTGKFN 365 (369)
T ss_dssp E--TTEEEEEETTTTEEEEEEE----SEEEEEE
T ss_pred ecCCCEEEEEECCCcEEEEEEE--eeCCCeEec
Confidence 9999 88888877777776665 667777753
No 95
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=22.20 E-value=2.1e+02 Score=17.73 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=19.8
Q ss_pred ceeeeeeCCEEEEEcCCCCeEEEEEccC
Q psy17326 74 PHSLTIFEDTLYWTDRQLNRVLSAHKFR 101 (264)
Q Consensus 74 P~~l~v~~d~lYwtD~~~~~i~~~~k~~ 101 (264)
..++++.++++|-+++..+ +.-++..+
T Consensus 4 a~~v~v~g~yaYva~~~~G-l~IvDISn 30 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNG-LVIVDISN 30 (42)
T ss_pred EEEEEEECCEEEEEeCCCC-EEEEECCC
Confidence 4578899999999988754 55566533
No 96
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=21.72 E-value=4.9e+02 Score=23.40 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=48.6
Q ss_pred CCCCccEEEEeCCCCeEEEEeCCCCe------EEEEecCCCceeEeEEEeecccceeEEeCCc--cc----ccceeeee-
Q psy17326 13 KIYWPNGLTLDIATRRVYFAESKLDF------IDFCNYDGTSRQQDTLYWTDRQLNRVVAGSH--YL----LHPHSLTI- 79 (264)
Q Consensus 13 ~l~~P~gLaiD~~~~rLYW~D~~~~~------Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~--~l----~~P~~l~v- 79 (264)
.++--+||+.|...+ .||+=+-.+. +....++......+.+=..+ ...+.... .+ .-+-||++
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~G~~~~~~~~D~Egi~~~ 93 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILD---MIPLRDPDGQPFPKNGLDPEGIAVP 93 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEecc---ceeccCCCCCcCCcCCCChhHeEEe
Confidence 455568999998555 4666555544 66666554211100000000 00111110 00 14458998
Q ss_pred eCCEEEEEcCCC------CeEEEEEccCCce
Q psy17326 80 FEDTLYWTDRQL------NRVLSAHKFRGKN 104 (264)
Q Consensus 80 ~~d~lYwtD~~~------~~i~~~~k~~g~~ 104 (264)
-++.+||++... ..|.+.+.. |..
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~ 123 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLD-GRV 123 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCC-Ccc
Confidence 888999999999 899988865 654
No 97
>PRK04792 tolB translocation protein TolB; Provisional
Probab=21.12 E-value=4.9e+02 Score=24.61 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=37.9
Q ss_pred eCCCCeEEEEeCCC----CeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeCCEEEEEcCCC--CeEEE
Q psy17326 23 DIATRRVYFAESKL----DFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQL--NRVLS 96 (264)
Q Consensus 23 D~~~~rLYW~D~~~----~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d~lYwtD~~~--~~i~~ 96 (264)
-..++-.|.+.... ..|..++.||.+.+. +..+...+..| ..+--+++|+|+.... ..|+.
T Consensus 180 ~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~------------l~~~~~~~~~p-~wSPDG~~La~~s~~~g~~~L~~ 246 (448)
T PRK04792 180 AFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQM------------LLRSPEPLMSP-AWSPDGRKLAYVSFENRKAEIFV 246 (448)
T ss_pred cccCEEEEEEeeCCCCCceEEEEEeCCCCCceE------------eecCCCcccCc-eECCCCCEEEEEEecCCCcEEEE
Confidence 33344456554432 378889999998876 55543211111 1222456777764432 35777
Q ss_pred EEccCCce
Q psy17326 97 AHKFRGKN 104 (264)
Q Consensus 97 ~~k~~g~~ 104 (264)
.+..+|..
T Consensus 247 ~dl~tg~~ 254 (448)
T PRK04792 247 QDIYTQVR 254 (448)
T ss_pred EECCCCCe
Confidence 77655543
No 98
>PRK01742 tolB translocation protein TolB; Provisional
Probab=20.89 E-value=5.2e+02 Score=24.08 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCeEEEEeCCCC-----eEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeeeeCCEEEEEcCCCC--eEEE
Q psy17326 24 IATRRVYFAESKLD-----FIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLN--RVLS 96 (264)
Q Consensus 24 ~~~~rLYW~D~~~~-----~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v~~d~lYwtD~~~~--~i~~ 96 (264)
....||.++....+ .|..+++||.+++. +..+...+..|. .+--+++|+|+....+ .|+.
T Consensus 166 ~f~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~------------lt~~~~~v~~p~-wSPDG~~la~~s~~~~~~~i~i 232 (429)
T PRK01742 166 AFRTRIAYVVQKNGGSQPYEVRVADYDGFNQFI------------VNRSSQPLMSPA-WSPDGSKLAYVSFENKKSQLVV 232 (429)
T ss_pred ccCCEEEEEEEEcCCCceEEEEEECCCCCCceE------------eccCCCccccce-EcCCCCEEEEEEecCCCcEEEE
Q ss_pred EEccCCceeEE
Q psy17326 97 AHKFRGKNQTV 107 (264)
Q Consensus 97 ~~k~~g~~~~~ 107 (264)
.+..+|....+
T Consensus 233 ~dl~tg~~~~l 243 (429)
T PRK01742 233 HDLRSGARKVV 243 (429)
T ss_pred EeCCCCceEEE
No 99
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=20.83 E-value=6.7e+02 Score=23.12 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=46.8
Q ss_pred ccEEEEeCCCCeEEEEeCCCCeEEEEecCCCceeEeEEEeecccceeEEeCCcccccceeeee--eCCEEEEEcCCCCeE
Q psy17326 17 PNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNRV 94 (264)
Q Consensus 17 P~gLaiD~~~~rLYW~D~~~~~Ie~~~ldG~~r~~~~lfwtd~~~~~vl~~~~~l~~P~~l~v--~~d~lYwtD~~~~~i 94 (264)
+.+++.....+++|-+.. .+.|..+|+.-..... ++-.+ ..|.++++ -+.++|-+.+..+.+
T Consensus 39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~-----------~i~~G----~~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVA-----------TIKVG----GNPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEE-----------EEE-S----SEEEEEEE--TTTEEEEEEEETTEE
T ss_pred eeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEE-----------EEecC----CCcceEEEcCCCCEEEEEecCCCce
Confidence 344666666778888864 5788888886443221 03222 57888888 466999888887877
Q ss_pred EEEEccCCceeEEE
Q psy17326 95 LSAHKFRGKNQTVV 108 (264)
Q Consensus 95 ~~~~k~~g~~~~~i 108 (264)
.-++-.+.+-.+.+
T Consensus 103 ~v~D~~tle~v~~I 116 (369)
T PF02239_consen 103 SVIDAETLEPVKTI 116 (369)
T ss_dssp EEEETTT--EEEEE
T ss_pred eEeccccccceeec
Confidence 77775555444433
No 100
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=20.62 E-value=1.7e+02 Score=26.58 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=37.5
Q ss_pred ccceeeeee-CCEEEEEcCCCCeEEEEEccCCceeEEEeccCCCceeEEE
Q psy17326 72 LHPHSLTIF-EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120 (264)
Q Consensus 72 ~~P~~l~v~-~d~lYwtD~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~v 120 (264)
..||.++.. .+.+++++..++.|-+.+..+|+..++-...-..|.+|.+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~ 111 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVV 111 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEE
Confidence 578999984 5579999999999999999888876665544456666654
No 101
>PRK03629 tolB translocation protein TolB; Provisional
Probab=20.14 E-value=6.7e+02 Score=23.46 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=13.3
Q ss_pred CeEEEEecCCCceeE
Q psy17326 37 DFIDFCNYDGTSRQQ 51 (264)
Q Consensus 37 ~~Ie~~~ldG~~r~~ 51 (264)
..|..+++||.+++.
T Consensus 179 ~~l~~~d~dg~~~~~ 193 (429)
T PRK03629 179 YELRVSDYDGYNQFV 193 (429)
T ss_pred eeEEEEcCCCCCCEE
Confidence 489999999999886
Done!