RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17326
(264 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 185 bits (469), Expect = 7e-54
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 20/208 (9%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
++ ++++ I WPNG+TLD+ + R+Y+ +SKL I + +G +R+
Sbjct: 544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--------- 594
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
++ L HP SL +FED ++WTD + SA++ G + +++ + P + +
Sbjct: 595 ---ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 651
Query: 121 HHPSLQPITRNDCV-----NAPCQQLCLLSP---SSSTGYTCKCIAGFRVTKDGRCVEEE 172
H QP N C N CQ LCL +P S +TC C G + +D R E
Sbjct: 652 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 711
Query: 173 TPVLLVMKGSQIVDVSLKPGDKKETPVL 200
+ + + V + + +
Sbjct: 712 AEAAVATQETSTVRLKVSSTAVRTQHTT 739
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 178 bits (451), Expect = 1e-51
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
++ ++++ I WPNG+TLD+ + R+Y+ +SKL I + +G +R+
Sbjct: 526 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--------- 576
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
++ L HP SL +FED ++WTD + SA++ G + +++ + P + +
Sbjct: 577 ---ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633
Query: 121 HHPSLQPITRNDCV-----NAPCQQLCLLSP---SSSTGYTCKCIAGFRVTKDGR-CVEE 171
H QP N C N CQ LCL +P S +TC C G + +D R C+ E
Sbjct: 634 FHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 693
Query: 172 ET 173
Sbjct: 694 AE 695
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 168 bits (425), Expect = 5e-50
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
++ ++++ I WPNG+TLD+ + R+Y+ +SKL I + +G +R+
Sbjct: 232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--------- 282
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
++ L HP SL +FED ++WTD + SA++ G + +++ + P + +
Sbjct: 283 ---ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339
Query: 121 HHPSLQPITRNDCV-----NAPCQQLCLLSP---SSSTGYTCKCIAGFRVTKDGR-CVEE 171
H QP N C N CQ LCL +P S +TC C G + +D R C+ E
Sbjct: 340 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 399
Score = 37.9 bits (87), Expect = 0.002
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 131 NDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE 170
N+C+ N C +C GY C C GF++ RC +
Sbjct: 1 NECLDNNGGCSHVCNDLK---IGYECLCPDGFQLVAQRRCED 39
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 154 bits (389), Expect = 9e-45
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD S R I T ++WPNGLT+D A RR+Y+ ++K I+ N DG+
Sbjct: 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------- 278
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
+R S L HP ++T+FED+LYWTD + SA+KF GKNQ ++ + + P+ IH
Sbjct: 279 -HRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337
Query: 121 HHP--SLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE 170
HP R N C LCL S YTC C GFR C +
Sbjct: 338 LHPQRQPAGKNRCGDNNGGCTHLCLPSG---QNYTCACPTGFRKINSHACAQ 386
Score = 40.9 bits (95), Expect = 2e-04
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 131 NDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETP 174
+C N C Q C + C C G+R+T+DGR ++
Sbjct: 4 ENCNVNNGGCAQKCQMIR---GAVQCTCHTGYRLTEDGRTCQDVNE 46
Score = 30.9 bits (69), Expect = 0.45
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 20/135 (14%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVMKGSQIVDVSLKPGDK 194
C Q C S + + C C AG+ + D R + P +++ ++I + P
Sbjct: 50 EGYCSQGCTNSEGA---FQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRS 106
Query: 195 KETPVLLVMKGSQIVDVSLKPG-----DKSSGII--------TPVVGVENGL----QVEF 237
+ T +L ++ + +D + D + I V GL +
Sbjct: 107 EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 166
Query: 238 DKKAAMLYWLEGTKK 252
D LYW +
Sbjct: 167 DWVHDKLYWTDSGTS 181
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 148 bits (374), Expect = 3e-43
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 21/178 (11%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
++ ++++ I WPNG+TLD+ + R+Y+ +SKL I + +G +R+
Sbjct: 150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--------- 200
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
++ L HP SL +FED ++WTD + SA++ G + +++ + P + +
Sbjct: 201 ---ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257
Query: 121 HHPSLQPITRNDC-----VNAPCQQLCLLSP---SSSTGYTCKCIAGFRVTKDGR-CV 169
H QP N C N CQ LCL +P S +TC C G + +D R C+
Sbjct: 258 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
Score = 53.1 bits (127), Expect = 2e-08
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 3 ESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLN 62
+ S T + + L ++A+ R+Y+++ I D
Sbjct: 18 DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------- 67
Query: 63 RVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
S + P L + +YWTD L V A K +T+ S+P +I V
Sbjct: 68 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 127
Query: 121 H 121
Sbjct: 128 D 128
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 143 bits (361), Expect = 3e-41
Identities = 65/176 (36%), Positives = 93/176 (52%), Gaps = 18/176 (10%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD SSR II+++IYWPNGLTLD +++Y+A++KL+FI N DGT
Sbjct: 152 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT------------- 198
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
NR L HP +LT+FED LYWTD + +L+ +K+ G+ + I P+ IH
Sbjct: 199 -NRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257
Query: 121 HHPSLQPITRND--CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEET 173
QP N N C LCL+SP Y C C G ++ ++G+ C + +
Sbjct: 258 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKP-FYQCACPTGVKLLENGKTCKDGNS 312
Score = 58.5 bits (141), Expect = 3e-10
Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Query: 2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQL 61
+ +TI+ + + + +Y+++ + I ++ T Q+ +
Sbjct: 22 NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV------- 74
Query: 62 NRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIH 119
LL P L + LYWTD + NR+ ++ + + + QP +I
Sbjct: 75 ------VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIA 128
Query: 120 VH 121
+
Sbjct: 129 LD 130
Score = 28.1 bits (62), Expect = 2.7
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 198 PVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYWLEGTKKA 253
P+LL + V G V G+E+ V+F ++YW + +++A
Sbjct: 5 PLLLYANRRDLRLVDATNG--KENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA 58
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 134 bits (337), Expect = 2e-37
Identities = 68/174 (39%), Positives = 90/174 (51%), Gaps = 19/174 (10%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD S R I T ++WPNGLT+D A RR+Y+ ++K I+ N DG+
Sbjct: 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------- 235
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
+R S L HP ++T+FED+LYWTD + SA+KF GKNQ ++ + + P+ IH
Sbjct: 236 -HRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294
Query: 121 HHPSLQPITRNDC--VNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEE 172
HP QP +N C N C LCL S YTC C GFR C E
Sbjct: 295 LHPQRQPAGKNRCGDNNGGCTHLCLPSG---QNYTCACPTGFRKINSHACALEV 345
Score = 38.7 bits (89), Expect = 0.001
Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 25/142 (17%)
Query: 131 NDCV-NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE--EETPVLLVMKGSQIVDV 187
N+C C Q C S + + C C AG+ + D R + PVLL I V
Sbjct: 2 NECAEEGYCSQGCTNSEGA---FQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 188 SLKPGDKKETPVLLVMKGSQIVDVSLKPG-----------------DKSSGIITPVVGVE 230
+ T +L ++ + +D + + S+ G+E
Sbjct: 59 LPH--RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 116
Query: 231 NGLQVEFDKKAAMLYWLEGTKK 252
+ + D LYW +
Sbjct: 117 SPGGLAVDWVHDKLYWTDSGTS 138
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 121 bits (304), Expect = 2e-31
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 20/171 (11%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
+D S R +++T + WPNGL LD ++Y+ ++K D I+ N DGT
Sbjct: 465 LDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT------------- 511
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
R V + H T+ D +YWTD Q + HK + + ++ + + +
Sbjct: 512 -GRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQ-LPDLMGLKA 569
Query: 121 HHPSLQPITRNDCV-NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CV 169
+ + N C LCL P G C C GF + D + C+
Sbjct: 570 TNVHRVIGSNPCAEENGGCSHLCLYRP---QGLRCACPIGFELISDMKTCI 617
Score = 116 bits (291), Expect = 9e-30
Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 41/255 (16%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD SSR II+++IYWPNGLTLD +++Y+A++KL+FI N DGT
Sbjct: 157 MDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT------------- 203
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
NR L HP +LT+FED LYWTD + +L+ +K+ G+ + I P+ IH
Sbjct: 204 -NRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 262
Query: 121 HHPSLQPITRND--CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLV 178
QP N N C LCL+SP Y C C G ++ ++G+ ++ LL+
Sbjct: 263 FSQQRQPNATNPCGIDNGGCSHLCLMSP-VKPFYQCACPTGVKLLENGKTCKDGATELLL 321
Query: 179 MKGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFD 238
+ + + + +SL D + I+ + + + + +++D
Sbjct: 322 L-----------------------ARRTDLRRISLDTPD-FTDIVLQLEDIRHAIAIDYD 357
Query: 239 KKAAMLYWLEGTKKA 253
+YW + +A
Sbjct: 358 PVEGYIYWTDDEVRA 372
Score = 58.3 bits (140), Expect = 6e-10
Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 33/156 (21%)
Query: 2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ---------- 51
+ +TI+ + + + +Y+++ + I ++ T Q
Sbjct: 27 NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 86
Query: 52 ---------DTLYWTDRQLNRV-----------VAGSHYLLHPHSLTI--FEDTLYWTDR 89
+ LYWTD + NR+ V L P ++ + +YWTD
Sbjct: 87 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW 146
Query: 90 QLNRVLSAHKFRGKNQTV-VSHLISQPLSIHVHHPS 124
+ G ++ + ++ I P + + +
Sbjct: 147 GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEE 182
Score = 45.2 bits (106), Expect = 1e-05
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 16/113 (14%)
Query: 11 STKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHY 70
I + D +Y+ + ++ I DG+ Q VV
Sbjct: 345 LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ------------FVVTAQ-- 390
Query: 71 LLHPHSLTI--FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVH 121
+ HP + + LYWTD +R+ + ++S + +P +I +
Sbjct: 391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLD 443
Score = 32.5 bits (73), Expect = 0.14
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 40 DFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIF--EDTLYWTDRQLNRVLSA 97
+ +V + H ++ E +YWTD ++ + +
Sbjct: 317 TELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRS 376
Query: 98 HKFRGKNQTVVSHLISQPLSIHVHHPS 124
+Q VV+ I+ P I V +
Sbjct: 377 FIDGSGSQFVVTAQIAHPDGIAVDWVA 403
Score = 29.0 bits (64), Expect = 1.7
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 198 PVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYW 246
P+LL + V G V G+E+ V+F ++YW
Sbjct: 10 PLLLYANRRDLRLVDATNG--KENATIVVGGLEDAAAVDFVFSHGLIYW 56
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 113 bits (285), Expect = 1e-30
Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 16/127 (12%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD ++R + + PNGLT D + ++ + ++ + N R++
Sbjct: 153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK--------- 203
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKN-QTVVSHLISQPLSIH 119
V+ G +P ++T + LY+TD + N V++ K T H ++ I
Sbjct: 204 ---VLEGLQ---YPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGIT 257
Query: 120 VHHPSLQ 126
+
Sbjct: 258 IALSQCP 264
Score = 84.1 bits (208), Expect = 2e-19
Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 34/155 (21%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSR----------- 49
+ +TII + P G+ LD R +++ +S+LD I+ DGT R
Sbjct: 65 LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNP 124
Query: 50 -------QQDTLYWTDRQL-------------NRVVAGSHYLLHPHSLTI--FEDTLYWT 87
+ LYWTD NR + L P+ LT F L W
Sbjct: 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV 184
Query: 88 DRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHH 122
D +R + + V + P ++ +
Sbjct: 185 DAGTHRAECLN-PAQPGRRKVLEGLQYPFAVTSYG 218
Score = 56.8 bits (137), Expect = 1e-09
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 33/157 (21%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ--------- 51
M ++ + GL D + VY+ + I + G
Sbjct: 22 MKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81
Query: 52 ---------DTLYWTDRQLNRV-VA---GSHY-------LLHPHSLTI--FEDTLYWTDR 89
T++WTD QL+R+ VA G+ L++P + LYWTD
Sbjct: 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141
Query: 90 QLN--RVLSAHKFRGKNQTVVSHLISQPLSIHVHHPS 124
+ ++ ++H + + + P + S
Sbjct: 142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS 178
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 116 bits (292), Expect = 8e-30
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 20/176 (11%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
+D + R + + + P L LD ++++A+S L I+ + G
Sbjct: 463 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA------------- 509
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
NR+V +L P LT+FE+ LYW D+Q + + +T V I+Q IH
Sbjct: 510 -NRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 568
Query: 121 HHPSLQP---ITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
N C +CL+ C C + +D C +
Sbjct: 569 VKELNLQEYRQHPCAQDNGGCSHICLVKGDG--TTRCSCPMHLVLLQDELSCGGTK 622
Score = 112 bits (281), Expect = 2e-28
Identities = 62/254 (24%), Positives = 100/254 (39%), Gaps = 44/254 (17%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD S R+T++ + NGLT+D A RR+Y+ + + I+ N G +R+
Sbjct: 153 MDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV--------- 202
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
+ HP LT ++D +YWTD + A+K G+N+T++ + + I V
Sbjct: 203 ---IADDLP---HPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 256
Query: 121 HHPSLQPITRN-DCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETPVLLVM 179
H S Q N C LCL P + C C A + + D R T LL
Sbjct: 257 FHSSRQSGWNECASSNGHCSHLCLAVPVGG--FVCGCPAHYSLNADNRTCSAPTTFLLFS 314
Query: 180 KGSQIVDVSLKPGDKKETPVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDK 239
+ S I + + S II P+ + N +++D
Sbjct: 315 QKSAINRMVIDEQQ-------------------------SPDIILPIHSLRNVRAIDYDP 349
Query: 240 KAAMLYWLEGTKKA 253
LYW++ +
Sbjct: 350 LDKQLYWIDSRQNM 363
Score = 52.9 bits (126), Expect = 4e-08
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 31/155 (20%)
Query: 4 SSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ------------ 51
++ I T + + L D+ R+Y+ + L I +G++ +
Sbjct: 26 NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85
Query: 52 ------DTLYWTDRQLNRV-----------VAGSHYLLHPHSLTI--FEDTLYWTDRQLN 92
LYW D NR+ V L P +L + E +YWT+
Sbjct: 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGK 145
Query: 93 RVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP 127
+ G +T + + + + + + +
Sbjct: 146 PKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRL 180
Score = 52.1 bits (124), Expect = 6e-08
Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 3 ESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLN 62
+S + + + D +++Y+ +S+ + I DG+ T+ +
Sbjct: 328 QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF--TVVVSSVPS- 384
Query: 63 RVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
+ + P+ L+I + +YWT N + V+ +P ++ V
Sbjct: 385 -----QNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVV 439
Query: 121 H 121
+
Sbjct: 440 N 440
Score = 33.2 bits (75), Expect = 0.091
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 47 TSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI--FEDTLYWTDRQLNRVLSAHKFRGKN 104
+ R + N V + +L ++ +YWTD L + A
Sbjct: 12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL 71
Query: 105 QTVVSHLISQPLSIHVHH 122
+ VV + P + V
Sbjct: 72 EHVVEFGLDYPEGMAVDW 89
Score = 29.4 bits (65), Expect = 1.2
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 198 PVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYW 246
LL + + I +SL+ + + + P+ GV+ ++FD +YW
Sbjct: 7 AFLLFSRRADIRRISLETNNNN--VAIPLTGVKEASALDFDVTDNRIYW 53
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 45.9 bits (108), Expect = 4e-06
Identities = 11/107 (10%), Positives = 25/107 (23%), Gaps = 21/107 (19%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
++ + + I N + Y + DGT +
Sbjct: 214 INNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPALCVVKNDGTGFK---------- 259
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTV 107
+ G ++ + +Y+TD N+
Sbjct: 260 --ELAKGE-----FCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKA 299
Score = 29.3 bits (65), Expect = 1.2
Identities = 14/141 (9%), Positives = 42/141 (29%), Gaps = 28/141 (19%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQ--------- 51
+D + I + ++ T + + R Y+ K + + S
Sbjct: 136 IDGEEKKKIKNHYLF-----TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKP 190
Query: 52 -----DTLYWTDR----QLNRV-VAGSHYLL----HPHSLTIFEDTLYWTDRQLNRVLSA 97
+Y+ D + V + + ++ + ++ +++ N L
Sbjct: 191 VVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYGSLIFYQRGGDNPALCV 250
Query: 98 HKFRGKNQTVVSHLISQPLSI 118
K G ++ +++
Sbjct: 251 VKNDGTGFKELAKGEFCNINV 271
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 1e-05
Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 57/216 (26%)
Query: 13 KIYWPNGLTLDIATRRVYFAESKLDFI-DFC-----NY----DGTSRQQDTLYWTDRQLN 62
KI+W L L + E+ L+ + N+ D +S + ++ +L
Sbjct: 183 KIFW---LNL----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 63 RVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVV----SHLISQPLSI 118
R++ Y + L + + + +A F + ++ + +
Sbjct: 236 RLLKSKPY---ENCLLVLLNV--QN----AKAWNA--FNLSCKILLTTRFKQVTDFLSAA 284
Query: 119 HVHHPSLQPITRN-----------DCVNAPCQQL----CLLSPSSSTGYTCKCIAGFRVT 163
H SL + ++ Q L +P IA
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----RRLSIIA--ESI 337
Query: 164 KDGRCVEEETPVLLVMKGSQIVDVS---LKPGDKKE 196
+DG + + K + I++ S L+P + ++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Score = 39.8 bits (92), Expect = 7e-04
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 40/147 (27%)
Query: 45 DGTSRQQDTLYWTDRQLNRVVAGSHYLLHP-------HSLTIFED---------TLYWTD 88
DG + + + +L ++ S +L P L++F +L W D
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 89 ----------RQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV-----HHPSLQPITRNDC 133
+L++ K + K T+ I L + + H S+ + D
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSI--V---DH 452
Query: 134 VNAPCQQLCL--LSPSSSTGYTCKCIA 158
N P + L P Y I
Sbjct: 453 YNIP-KTFDSDDLIPPYLDQYFYSHIG 478
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 38.6 bits (90), Expect = 1e-04
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 138 CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEET 173
C+Q C + +C+C G+ + DG C
Sbjct: 15 CEQYCSDHTGT--KRSCRCHEGYSLLADGVSCTPTVE 49
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 38.8 bits (91), Expect = 2e-04
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV 169
N C +C Y C C GF++ RC
Sbjct: 36 NGGCSYVCNDLKIG---YECLCPDGFQLVAQRRCE 67
Score = 34.6 bits (80), Expect = 0.007
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 131 NDC-VNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
++C C QLC+ Y C+C GF++ +
Sbjct: 70 DECQDPDTCSQLCVNLEGG---YKCQCEEGFQLDPHTK 104
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 37.4 bits (87), Expect = 2e-04
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 138 CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEET 173
C+Q C + +C+C G+ + DG C
Sbjct: 9 CEQYCSDHTGT--KRSCRCHEGYSLLADGVSCTPTVE 43
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 37.4 bits (87), Expect = 2e-04
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 138 CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
C+Q C S + C C G+R+ ++ + C
Sbjct: 9 CEQFCKNSADNK--VVCSCTEGYRLAENQKSCEPAV 42
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 36.6 bits (85), Expect = 4e-04
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 130 RNDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
R C N C Q C +S C C G+ + +G+ C+
Sbjct: 1 RKLCSLDNGDCDQFCHEEQNS---VVCSCARGYTLADNGKACIPTG 43
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 35.8 bits (83), Expect = 8e-04
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
N C Q C S C C G+ + D + CV E
Sbjct: 5 NGGCDQFCREERSE---VRCSCAHGYVLGDDSKSCVSTE 40
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 36.2 bits (84), Expect = 0.002
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRC 168
+ C A C+ C P T Y C C GF
Sbjct: 5 DPCFRANCEYQCQ--PLDQTSYLCVCAEGFAPIPHEPH 40
Score = 30.0 bits (68), Expect = 0.28
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 133 CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV 169
C C C +T +C+C G+ + C
Sbjct: 46 CNQTACPADC----DPNTQASCECPEGYILDDGFICT 78
Score = 28.9 bits (65), Expect = 0.76
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 4/34 (11%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVT-KDGR 167
C +C P + + C C + + G
Sbjct: 86 GGFCSGVCHNLPGT---FECICGPDSALAGQIGT 116
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 35.7 bits (83), Expect = 0.002
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIA--GFRVTKDGR 167
++C C QLC+ P YTC C GF++ +D +
Sbjct: 46 DECSENMCAQLCVNYPGG---YTCYCDGKKGFKLAQDQK 81
Score = 32.6 bits (75), Expect = 0.020
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 131 NDCVNAP---CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CV 169
++C P +C P + C+C G+R + C
Sbjct: 4 DECSLKPSICGTAVCKNIPGD---FECECPEGYRYNLKSKSCE 43
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 32.8 bits (75), Expect = 0.008
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 124 SLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
+ + + + CQ LC Y C C G+ + +D
Sbjct: 8 ASRSKSGEEDPQPQCQHLCHNYVGG---YFCSCRPGYELQEDRH 48
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 34.3 bits (79), Expect = 0.015
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 118 IHVHHPSLQPITRNDCVNAPCQQ--LCLLSPSSST----GYTCKCIAGF 160
+ V +P + C PC C +S + GY CKC GF
Sbjct: 40 VEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGF 88
Score = 28.5 bits (64), Expect = 1.3
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 132 DCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
C PC+ +CL + ++C+C GF
Sbjct: 2 ICDPNPCENGGICLPGLADG-SFSCECPDGF 31
Score = 27.8 bits (62), Expect = 2.1
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
N+C PC+ +C Y+C+C F
Sbjct: 98 NECEVEPCKNGGICT---DLVANYSCECPGEF 126
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 33.8 bits (78), Expect = 0.017
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 131 NDCVNAPCQ-----QLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEE 171
+D + + Q C + +C+C G+ + DG
Sbjct: 86 DDQLICVNENGGCEQYCSDHTGT--KRSCRCHEGYSLLADGVSCTP 129
Score = 28.1 bits (63), Expect = 1.8
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQ--QLCLLSPSSSTGYTCKCIAGF 160
+ C ++PCQ C S Y C C+ F
Sbjct: 48 DQCASSPCQNGGSCKDQLQS---YICFCLPAF 76
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 33.9 bits (78), Expect = 0.022
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 131 NDCVNAPCQ-QLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETP 174
+ Q C S C C G+R+ D + + P
Sbjct: 87 TCNIKNGRCKQFCKTGADS--KVLCSCTTGYRLAPDQKSCKPAVP 129
Score = 28.1 bits (63), Expect = 1.9
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQ--QLCLLSPSSSTGYTCKCIAGF 160
+ C PC LC +S Y C C GF
Sbjct: 49 DQCEPNPCLNGGLCKDDINS---YECWCQVGF 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.024
Identities = 49/275 (17%), Positives = 82/275 (29%), Gaps = 105/275 (38%)
Query: 29 VYFAE-SKLDFIDFCNYDGTSRQ--QDTLYWTDRQLNRVVAGSHYL--LHPHSLTIFEDT 83
YF E L Y T D + ++ L+ ++ + + L +
Sbjct: 168 DYFEELRDL-------YQ-TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL----NI 215
Query: 84 LYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQP-ITRNDCVN--APCQQ 140
L W L + +L+S P+S P I + +
Sbjct: 216 LEW----LENPSNTPD--------KDYLLSIPISC--------PLIGVIQLAHYVVTAKL 255
Query: 141 LCLLSP-------SSSTGY-----TCKCIAG------------------FRVTKDG-RCV 169
L +P +TG+ T IA F + G RC
Sbjct: 256 LGF-TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI---GVRC- 310
Query: 170 EEETPVLLVMKGSQIVDVSLKPGDKKETPVLLVMKG---SQI----------------VD 210
E P + I++ SL+ + +P+L + Q+ V+
Sbjct: 311 YEAYPNTSL--PPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 211 VSLKPGDKS---SGIITPVVGVENGLQVEFDKKAA 242
+SL G K+ SG P + GL + K A
Sbjct: 368 ISLVNGAKNLVVSG---PPQSLY-GLNLTLRKAKA 398
Score = 32.3 bits (73), Expect = 0.18
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 29/93 (31%)
Query: 20 LTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI 79
+ D+ V F + + +DG D RV++GS + I
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDG----SDL---------RVLSGS--ISERIVDCI 483
Query: 80 FEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLI 112
+ W + +F+ +H++
Sbjct: 484 IRLPVKWE--------TTTQFK------ATHIL 502
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 31.5 bits (72), Expect = 0.051
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 131 NDCVNAPC---QQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CV 169
++C P +C + S Y C+C G +++ + C+
Sbjct: 47 DECQRDPLLCRGGVCHNTEGS---YRCECPPGHQLSPNISACI 86
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 32.7 bits (75), Expect = 0.054
Identities = 6/38 (15%), Positives = 7/38 (18%), Gaps = 4/38 (10%)
Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRC 168
N C G V+K C
Sbjct: 45 RSG-NCYLDIRPRGDNGD---TACSNEIGVGVSKASCC 78
Score = 31.9 bits (73), Expect = 0.10
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEE 171
C+ +P S Y C C F + CV+
Sbjct: 10 TTCISGNCVNTPGS---YICDCPPDFELNPTRVGCVDT 44
Score = 31.2 bits (71), Expect = 0.19
Identities = 7/42 (16%), Positives = 7/42 (16%), Gaps = 6/42 (14%)
Query: 131 NDCVNAPC--QQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CV 169
PC S C GFR
Sbjct: 82 GKAWGTPCEMCPAVNTSEYK---ILCPGGEGFRPNPITVILE 120
Score = 27.7 bits (62), Expect = 2.6
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 151 GYTCKCIAGFRVTKDGRC 168
+ C+C G+ + +D R
Sbjct: 143 SFQCRCPTGYYLNEDTRV 160
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 31.6 bits (72), Expect = 0.081
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 128 ITRNDCVNAP--CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVE 170
++ +C C CL C C G+++ D C
Sbjct: 52 VSFLNCSLDNGGCTHYCLEEVGW---RRCSCAPGYKLGDDLLQCHP 94
Score = 26.2 bits (58), Expect = 5.6
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 126 QPITRNDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGFRVTKDGRCVEE 171
+ + C C+ S ++C C +G+ R V
Sbjct: 10 LVLPLEHPCASLCCGHGTCIDGIGS---FSCDCRSGWEGRFCQREVSF 54
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 30.5 bits (69), Expect = 0.12
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 128 ITRNDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
+ C C C + S + C+C GF
Sbjct: 46 VPVKSCSEPRCFNGGTCQQALYFS-DFVCQCPEGF 79
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 30.9 bits (69), Expect = 0.13
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 128 ITRNDCVNAPC--QQLCLLSPSSSTGYTCKCIAGFRVTKDG-RCVEEETP 174
I+++ CV C C CKC+ + ++G +CVE P
Sbjct: 2 ISQHQCVKKQCPQNSGCFRHLDER--EECKCLLNY--KQEGDKCVENPNP 47
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 32.2 bits (73), Expect = 0.15
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 16 WPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPH 75
+ NG+T + + A+S I + S W + + +
Sbjct: 118 FLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGS----IWLEHPMLARSNSESVFPAAN 172
Query: 76 SLTIFEDTLYWTDRQLNRVL 95
L F + LY ++ + +L
Sbjct: 173 GLKRFGNFLYVSNTEKMLLL 192
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 31.2 bits (71), Expect = 0.17
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 131 NDCVNAPCQ-QLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEE 171
++C ++PC +C SP S + C+C + + C+E
Sbjct: 5 DECESSPCINGVCKNSPGS---FICECSSESTLDPTKTICIET 44
Score = 28.1 bits (63), Expect = 1.6
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 131 NDCVNAP---CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CV 169
++C P LC+ + S + C+C +G + GR C+
Sbjct: 108 DECEVFPGVCKNGLCVNTRGS---FKCQCPSGMTLDATGRICL 147
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 30.5 bits (69), Expect = 0.29
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 117 SIHVHHPSLQPITRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
++ + D V+ PC C Y C C + + D +
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGG---YFCSCPPEYFLHDDMK 154
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 30.3 bits (69), Expect = 0.33
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
N+CV+ PCQ CL + C C+ G+
Sbjct: 46 NECVSNPCQNDATCLDQIG---EFQCICMPGY 74
Score = 29.9 bits (68), Expect = 0.45
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
++C ++PC CL + C+C GF
Sbjct: 84 DECASSPCLHNGRCL---DKINEFQCECPTGF 112
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 28.3 bits (64), Expect = 0.66
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 5/40 (12%)
Query: 131 NDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRC 168
++C N C + C C GF C
Sbjct: 45 DECSVGNPCGNGTCKNVIGG---FECTCEEGFEPGPMMTC 81
Score = 26.0 bits (58), Expect = 4.3
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 131 NDCVNAP--CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CV 169
++C C+ + S Y C+C G+ G CV
Sbjct: 6 DECKEPDVCKHGQCINTDGS---YRCECPFGY--ILAGNECV 42
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 27.9 bits (61), Expect = 0.67
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 133 CVNAPC-QQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
C + PC + +++GY C+C G+R++ DG
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGT 49
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 29.7 bits (67), Expect = 0.71
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 129 TRNDCVNAPCQ--QLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETP 174
TR C Q C +S C C G+ + +G+ P
Sbjct: 80 TRKLCSLDNGDCDQFCHEEQNS---VVCSCARGYTLADNGKACIPTGP 124
Score = 28.2 bits (63), Expect = 1.9
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQ--QLCLLSPSSSTGYTCKCIAGF 160
+ C +PCQ C YTC C+ GF
Sbjct: 43 DQCETSPCQNQGKCKDGLGE---YTCTCLEGF 71
Score = 27.8 bits (62), Expect = 2.7
Identities = 6/38 (15%), Positives = 8/38 (21%), Gaps = 3/38 (7%)
Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRC 168
PC + L S +G D
Sbjct: 120 IPTGPYPCGKQTLERRKRS-VAQATSSSGE--APDSIT 154
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 29.2 bits (66), Expect = 0.71
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 133 CVNAPCQ--QLCLLSPSSSTGYTCKCIAGFRVTKDGRCVEEETP 174
C Q C +S C C G+ + +G+ P
Sbjct: 84 CSLDNGDCDQFCHEEQNS---VVCSCARGYTLADNGKACIPTGP 124
Score = 27.3 bits (61), Expect = 2.8
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
+ C +PCQ C YTC C+ GF
Sbjct: 43 DQCETSPCQNQGKCKDGLGE---YTCTCLEGF 71
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 25.5 bits (57), Expect = 2.3
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
+ C + PC C +S Y C C GF
Sbjct: 4 DQCESNPCLNGGSCKDDINS---YECWCPFGF 32
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 27.3 bits (61), Expect = 3.3
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 8/32 (25%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
+ C+ P +C + + C C +
Sbjct: 97 DKCIPHPGCVHGIC------NEPWQCLCETNW 122
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 28.1 bits (63), Expect = 3.4
Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 30/114 (26%)
Query: 10 ISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQ-----------------QD 52
++ + P G+T+ +V+ + K + I N DG +
Sbjct: 10 LTNQDTGPYGITVS-DKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDG 68
Query: 53 TLYWTDRQLNRV-----------VAGSHYLLHPHSLTI-FEDTLYWTDRQLNRV 94
+++T+ N++ + P+ +T +++T+ NR+
Sbjct: 69 EVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRI 122
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 26.2 bits (57), Expect = 4.9
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 129 TRNDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDG-RCVEEET 173
+ + C++ + +C+ GF + G +CV
Sbjct: 9 SAHKCIDTNVPENAACYRYLDGTEEWRCLLGF--KEVGGKCVPASI 52
>1aly_A CD40 ligand; cytokine, TNF, hyper-IGM syndrome; 2.00A {Homo
sapiens} SCOP: b.22.1.1 PDB: 1i9r_A 3qd6_A* 3lkj_A*
Length = 146
Score = 26.5 bits (58), Expect = 5.9
Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 10/97 (10%)
Query: 45 DGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKN 104
+ +S+ L W ++ + L + LT+ LY+ + + F
Sbjct: 14 EASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYY-------IYAQVTFCSNR 66
Query: 105 QTVVSHLISQPLSIHVHHPSLQPIT---RNDCVNAPC 138
+ L + + + PC
Sbjct: 67 EASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPC 103
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 25.8 bits (56), Expect = 6.1
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 129 TRNDCVNAPC--QQLCLLSPSSSTGYTCKCIAGFRVTKDG-RCVEEETP 174
+ + C++ C + +C+ F +D +CV
Sbjct: 3 SEHRCIDTNVPENAACYRYLDGT--EEWRCLLYF--KEDAGKCVPAPNM 47
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A
{Clostridium cellulolyticum} SCOP: a.102.1.2 PDB:
1ia7_A*
Length = 441
Score = 27.1 bits (60), Expect = 7.6
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
Query: 21 TLDIATRRVY-FAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTI 79
A + +Y ++ + ++ + D L W L S Y+
Sbjct: 179 KCLNAAKELYAMGKANQGVGNGQSFYQATSFGDDLAWAATWLYTATNDSTYITDAEQFIT 238
Query: 80 FEDTLYWTDRQLNRVLS 96
+T+ Q +
Sbjct: 239 LGNTMNENKMQDKWTMC 255
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 26.5 bits (57), Expect = 7.7
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CV 169
++C Y C+C+ GF + C+
Sbjct: 146 CNTDNEVCXNVEGV---YXCQCMEGFTFDXEXNVCL 178
Score = 26.5 bits (57), Expect = 7.7
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 7/40 (17%)
Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCVE 170
C N Q+ S + C C G + C E
Sbjct: 11 TICXNGQLVQM-------SNHFXCMCNEGLVHLSENTCEE 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,895,606
Number of extensions: 220684
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 116
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)