RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17326
(264 letters)
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 97.3 bits (241), Expect = 1e-24
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 12/127 (9%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
++ ++++ I WPNG+TLD+ + R+Y+ +SKL I + +G +R+
Sbjct: 150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--------- 200
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHV 120
++ L HP SL +FED ++WTD + SA++ G + +++ + P + +
Sbjct: 201 ---ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257
Query: 121 HHPSLQP 127
H QP
Sbjct: 258 FHNLTQP 264
Score = 34.9 bits (79), Expect = 0.006
Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 36/159 (22%)
Query: 2 DESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDT-------- 53
SS T+IS I P+GL +D +Y+ +S L + + G R+
Sbjct: 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR 123
Query: 54 ----------LYWTDRQ------------LNRVVAGSHYLLHPHSLTIFEDT--LYWTDR 89
+YWTD ++ + + P+ +T+ + LYW D
Sbjct: 124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183
Query: 90 QLNRVLSAHKFRGKNQTVV---SHLISQPLSIHVHHPSL 125
+L+ + S G N+ + ++ P S+ V +
Sbjct: 184 KLHSISSID-VNGGNRKTILEDEKRLAHPFSLAVFEDKV 221
Score = 29.1 bits (64), Expect = 0.53
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 17/103 (16%)
Query: 50 QQDTLYWTDRQLNRVVAG---------------SHYLLHPHSLTI--FEDTLYWTDRQLN 92
+ +YW+D + + S + P L + +YWTD L
Sbjct: 40 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG 99
Query: 93 RVLSAHKFRGKNQTVVSHLISQPLSIHVHHPSLQPITRNDCVN 135
V A K +T+ S+P +I V +
Sbjct: 100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP 142
Score = 26.8 bits (58), Expect = 2.5
Identities = 6/49 (12%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 198 PVLLVMKGSQIVDVSLKPGDKSSGIITPVVGVENGLQVEFDKKAAMLYW 246
L ++ ++L S + + + N + ++ + + +YW
Sbjct: 2 AYLFFTNRHEVRKMTLD----RSEYTSLIPNLRNVVALDTEVASNRIYW 46
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 86.5 bits (213), Expect = 9e-21
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 16/125 (12%)
Query: 1 MDESSRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQ 60
MD ++R + + PNGLT D + ++ + ++ + N R
Sbjct: 153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----------- 201
Query: 61 LNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHL-ISQPLSIH 119
R V L +P ++T + LY+TD + N V++ K ++ I
Sbjct: 202 --RKVL--EGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGIT 257
Query: 120 VHHPS 124
+
Sbjct: 258 IALSQ 262
Score = 29.1 bits (64), Expect = 0.55
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 13/85 (15%)
Query: 50 QQDTLYWTDRQLNRV-----------VAGSHYLLHPHSLTI--FEDTLYWTDRQLNRVLS 96
+YWTD + L P + + T++WTD QL+R+
Sbjct: 46 VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEV 105
Query: 97 AHKFRGKNQTVVSHLISQPLSIHVH 121
A + + + + P I
Sbjct: 106 AKMDGTQRRVLFDTGLVNPRGIVTD 130
Score = 28.3 bits (62), Expect = 0.80
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 81 EDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHH 122
+ +YWTD + A G+ T++ + P I + H
Sbjct: 47 DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH 88
Score = 26.0 bits (56), Expect = 4.5
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 200 LLVMKGSQIVDVSLKPGD--KSSGIITPVVGVENGLQVEFDKKAAMLYW 246
LL + +I + L+ K+ + + + + FD ++YW
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYW 52
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 40.2 bits (94), Expect = 6e-06
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEE 171
C C + C C AG+ + ++ R C E+
Sbjct: 7 APGEAPTCDHHCHNHLGG---FYCSCRAGYVLHRNKRTCSEQ 45
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 39.9 bits (93), Expect = 9e-06
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 135 NAPCQQLCLLSP---SSSTGYTCKCIAGFRVTKDGR-CV 169
N CQ LCL +P S +TC C G + +D R C+
Sbjct: 11 NGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 39.8 bits (93), Expect = 1e-05
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 132 DCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
+C N C CL C C G+++ D C
Sbjct: 1 NCSLDNGGCTHYCLEEVGW---RRCSCAPGYKLGDDLLQCHPAV 41
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 39.4 bits (92), Expect = 1e-05
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEET 173
N C+Q C + +C+C G+ + DG C
Sbjct: 6 NGGCEQYCSDHTGTK--RSCRCHEGYSLLADGVSCTPTVE 43
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 39.4 bits (92), Expect = 2e-05
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
N C Q C S C C G+ + D + CV E
Sbjct: 5 NGGCDQFCREERSE---VRCSCAHGYVLGDDSKSCVSTE 40
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 39.0 bits (91), Expect = 2e-05
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
N C Q C +S C C G+ + +G+ C+
Sbjct: 7 NGDCDQFCHEEQNS---VVCSCARGYTLADNGKACIPTG 42
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 39.4 bits (92), Expect = 2e-05
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEEE 172
N C+Q C S + C C G+R+ ++ + C
Sbjct: 7 NGRCEQFCKNSADNK--VVCSCTEGYRLAENQKSCEPAV 43
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 38.2 bits (89), Expect = 3e-05
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 131 NDC-VNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
++C C QLC+ Y C+C GF++ +
Sbjct: 2 DECQDPDTCSQLCVNLEGG---YKCQCEEGFQLDPHTK 36
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 37.5 bits (87), Expect = 5e-05
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 132 DCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
D V+ PC C Y C C + + D +
Sbjct: 5 DFVDVPCSHFCNNFIGG---YFCSCPPEYFLHDDMK 37
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 36.3 bits (84), Expect = 1e-04
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 131 NDC--VNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRC 168
N+C N C +C Y C C GF++ RC
Sbjct: 3 NECLDNNGGCSHVCNDLKIG---YECLCPDGFQLVAQRRC 39
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 35.3 bits (81), Expect = 4e-04
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
+ + PC C Y C C G+ + ++
Sbjct: 7 SLGDSVPCDHYCHNYLGG---YYCSCRVGYILHQNKH 40
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 34.2 bits (78), Expect = 0.001
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEE 171
CQ LC Y C C G+ + +D C E
Sbjct: 19 QPQCQHLCHNYVGG---YFCSCRPGYELQEDRHSCQAE 53
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 33.3 bits (76), Expect = 0.002
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 131 NDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVE 170
N+C+ C+ +P S Y C C F + CV+
Sbjct: 4 NECLDPTTCISGNCVNTPGS---YICDCPPDFELNPTRVGCVD 43
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 43
Score = 32.9 bits (75), Expect = 0.002
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 133 CVNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDG--RC 168
C A C+ C P T Y C C GF RC
Sbjct: 7 CFRANCEYQCQ--PLDQTSYLCVCAEGFAPIPHEPHRC 42
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 31.3 bits (71), Expect = 0.008
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 131 NDCVNAP---CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR 167
++C P C+ + S + C+C G+ + +D R
Sbjct: 4 DECQELPGLCQGGKCINTFGS---FQCRCPTGYYLNEDTR 40
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 31.3 bits (71), Expect = 0.008
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 131 NDCVNAP---CQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CV 169
++C P +C + S Y C+C G +++ + C+
Sbjct: 3 DECQRDPLLCRGGVCHNTEGS---YRCECPPGHQLSPNISACI 42
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 29.4 bits (66), Expect = 0.042
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 127 PITRNDCVNAPCQQLCLLSPSSSTGYTCKC 156
P+ N C PCQ + Y C C
Sbjct: 1 PV--NPCCYYPCQHQGICVRFGLDRYQCDC 28
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 29.3 bits (66), Expect = 0.046
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 131 NDC-VNAPCQQLCLLSPSSSTGYTCKCIAGFR 161
++C C +C P + + C C
Sbjct: 3 DECENGGFCSGVCHNLPGT---FECICGPDSA 31
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.9 bits (65), Expect = 0.057
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
N+CV+ PCQ CL + C C+ G+
Sbjct: 2 NECVSNPCQNDATCL---DQIGEFQCICMPGY 30
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 28.9 bits (65), Expect = 0.058
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
+ C ++PCQ C Y C C+ F
Sbjct: 3 DQCASSPCQNGGSCK---DQLQSYICFCLPAF 31
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 29.6 bits (66), Expect = 0.061
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 4/34 (11%)
Query: 131 NDCVNAPCQQ--LCLLSPSSST--GYTCKCIAGF 160
+ C C + S Y CKC GF
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGF 40
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 28.9 bits (65), Expect = 0.062
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
+ C +PCQ C YTC C+ GF
Sbjct: 1 DQCETSPCQNQGKCK---DGLGEYTCTCLEGF 29
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 28.5 bits (64), Expect = 0.085
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 128 ITRNDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
+ + C + PC C Y C C GF
Sbjct: 1 VDGDQCESNPCLNGGSCK---DDINSYECWCPFGF 32
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 28.5 bits (64), Expect = 0.086
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
++C ++PC CL + C+C GF
Sbjct: 1 DECASSPCLHNGRCL---DKINEFQCECPTGF 29
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 27.8 bits (62), Expect = 0.14
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIA-GF 160
N C + PCQ + Y C C GF
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGF 32
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 30.6 bits (67), Expect = 0.15
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 56 WTDRQLNRVVAGSHYLLHPHSLTIFED-TLYWTDRQLNRVL 95
V L P ++ + D T+Y DR +RV+
Sbjct: 208 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 248
>d1alya_ b.22.1.1 (A:) Extracellular domain of CD40 ligand {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 29.9 bits (67), Expect = 0.17
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 9/93 (9%)
Query: 48 SRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTV 107
S+ L W ++ + L + LT+ LY+ Q+ F +
Sbjct: 17 SKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVT-------FCSNREA- 68
Query: 108 VSHLISQPLSIHVHHPSLQPITRNDCVNAPCQQ 140
S S+ + P N
Sbjct: 69 -SSQAPFIASLCLKSPGRFERILLRAANTHSSA 100
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 30.5 bits (68), Expect = 0.18
Identities = 12/120 (10%), Positives = 30/120 (25%), Gaps = 19/120 (15%)
Query: 5 SRSTIISTKIYWPNGLTLDIATRRVYFAESKLDFIDFCNYDGTSRQQDTLYWTDRQLNRV 64
+ +++ + NG+ + + VY AE + +Y
Sbjct: 196 NDVRVVAEGFDFANGINISPDGKYVYIAE-------------LLAHKIHVYEKHANWTLT 242
Query: 65 VAGSHYLL-HPHSLTIFEDTLYWTDRQLNRVLSAHKFRGKNQTVVSHLISQPLSIHVHHP 123
++++ T + + +N S+ L I
Sbjct: 243 PLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAEN-----PPGSEVLRIQDILS 297
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 26.7 bits (59), Expect = 0.42
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 11/44 (25%)
Query: 130 RNDC-VNAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CVEE 171
R+ C V+A C+ +TG+ C+C+A + T +GR CV E
Sbjct: 6 RHQCSVHAECR-------DYATGFCCRCVANY--TGNGRQCVAE 40
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 26.3 bits (58), Expect = 0.56
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 131 NDCV--NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGR-CV 169
++C + C+ + S Y C+C G+ G CV
Sbjct: 6 DECKEPDVCKHGQCINTDGS---YRCECPFGY--ILAGNECV 42
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 26.0 bits (57), Expect = 0.90
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
+ C +C+ S YTC C+ G+
Sbjct: 7 PSSYDGYCLNGGVCMHIESLD-SYTCNCVIGY 37
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 25.1 bits (55), Expect = 1.5
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
C + C + CL + YTC C GF
Sbjct: 2 ASCQDMSCSKQGECLETIG---NYTCSCYPGF 30
>d1ccva_ g.22.1.1 (A:) Chymotrypsin inhibitor AMCI {Honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 56
Score = 25.6 bits (56), Expect = 1.5
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCK----CIAGFRVTKDGRCVEEE 172
N C +A C C + C+ C GF +G CV E
Sbjct: 10 NTCGSA-CAPTCAQPKTRICTMQCRIGCQCQEGFLRNGEGACVLPE 54
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 24.3 bits (53), Expect = 2.5
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
C N C C+ + YTCKC GF
Sbjct: 2 AACTNTSCSGHGECV---ETINNYTCKCDPGF 30
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 24.5 bits (53), Expect = 2.7
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 131 NDCVNAPCQQ--LCLLSPSSSTGYTCKCIAGF 160
+ C +C+ + Y C C+ G+
Sbjct: 5 PLSHDGYCLHDGVCMYIEALD-KYACNCVVGY 35
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 24.4 bits (53), Expect = 3.1
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 131 NDCVNAP---CQQLCLLSPSSSTGYTCKCIAGFRV-TKDGR-CV 169
++C +P + C+ +P + CKC G+ + C+
Sbjct: 4 DECRISPDLCGRGQCVNTPGD---FECKCDEGYESGFMMMKNCM 44
>d1eaic_ g.22.1.1 (C:) Ascaris elastase inhibitor {Pig roundworm
(Ascaris suum) [TaxId: 6253]}
Length = 61
Score = 24.8 bits (54), Expect = 3.2
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIAGFRVTKDGRCV 169
N PC +C C G R T DG+C+
Sbjct: 26 NTPCPLMC-----RRPSCECSPGRGMRRTNDGKCI 55
>d1ataa_ g.22.1.1 (A:) Ascaris trypsin inhibitor, ATI {Pig roundworm
(Ascaris suum) [TaxId: 6253]}
Length = 62
Score = 24.9 bits (54), Expect = 3.3
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 9/37 (24%)
Query: 135 NAPCQQLCLLSPSSSTGYTCKCIA--GFRVTKDGRCV 169
PC + C P C+CIA GF G C+
Sbjct: 26 IVPCTREC--KPPR-----CECIASAGFVRDAQGNCI 55
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 46
Score = 23.2 bits (50), Expect = 6.7
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 5/30 (16%)
Query: 131 NDCVNAPCQQLCLLSPSSSTGYTCKCIAGF 160
C++ C L + C+C G+
Sbjct: 12 GYCLHGQCIYL-----VDMSQNYCRCEVGY 36
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB),
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 173
Score = 25.2 bits (55), Expect = 6.8
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 9/45 (20%)
Query: 39 IDFCNYDGTSRQQDTLYWTDRQLNRVVAGSHYLLHPHSLTIFEDT 83
I Y G + +L D + HPH L +
Sbjct: 43 IKINGYTGPGTVRISLVTKD---------PPHRPHPHELVGKDCR 78
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 23.2 bits (50), Expect = 7.5
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 131 NDCVNA--PCQQ--LCLLSPSSSTGYTCKCIAGF 160
++C PC+ C+ + S + C+C+ G+
Sbjct: 4 DECSLGANPCEHAGKCINTLGS---FECQCLQGY 34
>d2b5ib1 b.1.2.1 (B:6-103) Interleukin-2 receptor beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 24.1 bits (52), Expect = 8.4
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 137 PCQQLCLLSPSSSTGYTCKCIAG 159
QQ C L P S + C I G
Sbjct: 38 RWQQTCELLPVSQASWACNLILG 60
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm
(Ancylostoma caninum) [TaxId: 29170]}
Length = 78
Score = 23.8 bits (51), Expect = 9.6
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 14/56 (25%)
Query: 131 NDCVNAPCQQLC--LLSPSSSTGYT------------CKCIAGFRVTKDGRCVEEE 172
+ C + C + C C C GF KD +CV E
Sbjct: 8 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVCEEGFYRNKDDKCVSAE 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 947,171
Number of extensions: 41664
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 55
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)