RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17330
(184 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 126 bits (319), Expect = 1e-36
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G GGPL L+ V + +V N +C++ +S YG TI +N+LCAG L GGKD+C GDSGG
Sbjct: 130 GRTSEGGPLPDVLQEVNVPIVSNAECKRAYS-YGGTITDNMLCAGGLEGGKDACQGDSGG 188
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
PL+ + + ++G+VS+G CA +PGVYTRV++Y+ WI
Sbjct: 189 PLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 123 bits (310), Expect = 2e-35
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 2/98 (2%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
G G L L+ V + +V N CR+ +S G I +N+LCAG L GGKD+C GDSGGPL+
Sbjct: 134 EGAGSLPDTLQEVNVPIVSNATCRRAYSGGG-AITDNMLCAGGLEGGKDACQGDSGGPLV 192
Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
D ++ ++G+VS+G CA G PGVYTRV++Y+ WI
Sbjct: 193 C-NDGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 92.1 bits (229), Expect = 2e-23
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Query: 87 LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDT 146
L L+ V + VV CR S YG T+ +N++CAG +GGKD+C GDSGGPL+
Sbjct: 134 LPDTLQEVTVPVVSRETCR---SAYGGTVTDNMICAG--AGGKDACQGDSGGPLVCSDG- 187
Query: 147 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
+IG+VS+G CA +PGVYT V++Y+ WI
Sbjct: 188 --ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 65.3 bits (159), Expect = 9e-13
Identities = 39/107 (36%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENIL---CAGVLSGGKDSCGGD 135
VP P L V + V C Q A+ L CAG KD+C GD
Sbjct: 172 SDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAG--RPPKDACQGD 229
Query: 136 SGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIAD 181
SGGP+ + + GVVS+G C PGVYT V+NY WIA
Sbjct: 230 SGGPIFHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAA 276
>gnl|CDD|234319 TIGR03705, poly_P_kin, polyphosphate kinase 1. Members of this
protein family are the enzyme polyphosphate kinase 1
(PPK1). This family is found in many prokaryotes and
also in Dictyostelium. Sequences in the seed alignment
were taken from prokaryotic consecutive two-gene pairs
in which the other gene encodes an exopolyphosphatase.
It synthesizes polyphosphate from the terminal phosphate
of ATP but not GTP, in contrast to PPK2 [Central
intermediary metabolism, Phosphorus compounds].
Length = 672
Score = 32.1 bits (74), Expect = 0.13
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 12 HVIPSISDDSHYQILHLEQRKKSKACK------PSQLGGVARLPGPAGPG 55
H P + + S + LE+ + + P L RLP G G
Sbjct: 140 HPFPFLPNKSLNLAVELEKDAFGRESQLALVQVPRALPRFIRLPPEGGKG 189
>gnl|CDD|233699 TIGR02050, gshA_cyan_rel, carboxylate-amine ligase, YbdK family.
This family represents a division of a larger family,
the other branch of which is predicted to act as
glutamate--cysteine ligase (the first of two enzymes in
glutathione biosynthesis) in the cyanobacteria. Species
containing this protein, however, are generally not
believe to make glutathione, and the function is
unknown.
Length = 287
Score = 29.6 bits (67), Expect = 0.81
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILC 121
G P R + V DNP+ +++ YG + ++
Sbjct: 84 GAGTHPFARWRRQEVADNPRYQRLLERYGYVARQQLVF 121
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 28.1 bits (63), Expect = 2.7
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 129 KDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI-QWIADNIS 184
D+ G SG P+ L +K +IGV G R+T I +I NI
Sbjct: 198 ADTLPGSSGSPV---LISKDEVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNIK 251
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 27.5 bits (61), Expect = 4.6
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 133 GGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 176
+ L + Y I YGK ++ F Y ++
Sbjct: 87 SNSTRNYLHRFIFLSYQIPDTNQYGKGILDLCFVLFYMIFFTFL 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.141 0.448
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,438,084
Number of extensions: 849387
Number of successful extensions: 604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 9
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)