RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17330
(184 letters)
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 147 bits (373), Expect = 2e-44
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
G S + + + VV +C + F G + + LCAG KDSCGGDSGGPL+
Sbjct: 177 TGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGG-EKAKDSCGGDSGGPLLAE 235
Query: 144 -LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
+ ++++ G+VS+G C G+PG+YT+V Y WI NI
Sbjct: 236 RANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 139 bits (353), Expect = 7e-42
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G+V G + L+ + ++ N +C+Q I EN++CAG GG DSC GDSGG
Sbjct: 132 GTVVYQGTTADILQEADVPLLSNERCQQQM--PEYNITENMICAGYEEGGIDSCQGDSGG 189
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
PLM + ++++ GV S+G +CA PGVY RV+ + +WI +
Sbjct: 190 PLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFL 234
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 138 bits (349), Expect = 3e-41
Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G V G + L+++++ +VD C + + TI N+ CAG GG+DSC GDSGG
Sbjct: 131 GRVFHKGRSALVLQYLRVPLVDRATCLR---STKFTITNNMFCAGFHEGGRDSCQGDSGG 187
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
P + ++ ++ G++S+G++CA G G+YT+V+ Y+ WI +
Sbjct: 188 PHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 138 bits (349), Expect = 3e-41
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G G S +L+ +++ VD C+ + I +N+ CAG + +D+C GDSGG
Sbjct: 131 GRTHEKGEQSTRLKMLEVPYVDRNSCKL---SSSFIITQNMFCAGYDTKQEDACQGDSGG 187
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
P + Y++ G+VS+G+ CA G G+YT+VT +++WI ++
Sbjct: 188 PHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 136 bits (344), Expect = 2e-40
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G G + L+ V I +V N +C++ + I + ++CAG GGKD+C GDSGG
Sbjct: 133 GFSKEKGEIQNILQKVNIPLVTNEECQKRY--QDYKITQRMVCAGYKEGGKDACKGDSGG 190
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
PL+ + + ++G+ S+G+ CA PGVYT+V Y+ WI +
Sbjct: 191 PLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQ 236
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 135 bits (342), Expect = 3e-40
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G + L+ +I +V N +C++ + G I ++CAG GGKD+C GDSGG
Sbjct: 133 GYRKLRDKIQNTLQKAKIPLVTNEECQKRY--RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
PL + ++++G+ S+G+ CA+ PGVYT V Y+ WI +
Sbjct: 191 PLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 135 bits (342), Expect = 5e-40
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGA--TINENILCAGVLSGGKDSCGGDS 136
G + G + +L + + + C Q G I E + CAG G KDSC GDS
Sbjct: 133 GQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDS 192
Query: 137 GGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
GGP +Y+ G+VS+G+ CA VG GVYTRV+ YI+W+ +
Sbjct: 193 GGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR 240
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 132 bits (335), Expect = 3e-39
Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 74 GPGCL----GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGK 129
+ G+ GG L+ V + +V + CR + I ++++CAGV GGK
Sbjct: 125 TGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY--GADEILDSMICAGVPEGGK 182
Query: 130 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
DSC GDSGGPL Y+ G+VS+G CA G+PGVYT V+ ++ WI N
Sbjct: 183 DSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 132 bits (333), Expect = 8e-39
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM-- 141
L ++I +VD+ C++ ++ + +++CAG GGKD+C GDSGGP++
Sbjct: 146 LQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTL 205
Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
++Y++G VS+G C + GVY+ + + WI
Sbjct: 206 NRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVT 247
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 131 bits (332), Expect = 1e-38
Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G GG + L+ +I V++ C + I ++C G LSGG DSC GDSGG
Sbjct: 137 GHTQYGGTGALILQKGEIRVINQTTCENL---LPQQITPRMMCVGFLSGGVDSCQGDSGG 193
Query: 139 PLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
PL D + + GVVS+G CA+ PGVYTR+ + WI +N
Sbjct: 194 PLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT 239
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 130 bits (330), Expect = 1e-38
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G+ GG L + V + CR S+ + ++CAG + +D+C GDSGG
Sbjct: 118 GANREGGSQQRYLLKANVPFVSDAACRS--SSSFILVANEMICAGYDTKQEDTCQGDSGG 175
Query: 139 PLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
P+ ++ +G+VS+G+ CA G GVYT V+ + IA
Sbjct: 176 PMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAAR 222
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 130 bits (330), Expect = 2e-38
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G++ G LR Q++++D C + + Y I +LCAG L G D+C GDSGG
Sbjct: 126 GALKNDGYSQNHLRQAQVTLIDATTCNEPQA-YNDAITPRMLCAGSLEGKTDACQGDSGG 184
Query: 139 PLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
PL+ +Y+ G+VS+G +CA+ PGVYTRVT WI
Sbjct: 185 PLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 230
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 134 bits (338), Expect = 4e-38
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
G S L + + C Q Y + + LC G +DSC GDSGGPL P
Sbjct: 270 NGSSSDVLLQANVPLQPRSACSQ---AYRRAVPLSQLCVG-GGDLQDSCKGDSGGPLQAP 325
Query: 144 L------DTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
K G+VS G C ++ PG+YT V Y+QWI D ++
Sbjct: 326 AQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMA 373
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 136 bits (344), Expect = 5e-38
Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G + L+ +I +V N +C++ + G I ++CAG GGKD+C GDSGG
Sbjct: 520 GYRKLRDKIQNTLQKAKIPLVTNEECQKRY--RGHKITHKMICAGYREGGKDACKGDSGG 577
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
PL + ++++G+ S+G+ CA+ PGVYT V Y+ WI +
Sbjct: 578 PLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 129 bits (327), Expect = 8e-38
Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
S LR + +V + KC YGA I+ N+LCAG D+C GDSGGPL
Sbjct: 138 ENVSGYSSSLREALVPLVADHKCSSPEV-YGADISPNMLCAGYFDCKSDACQGDSGGPLA 196
Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+ Y+ G++S+G C + PGVYTRV NY+ WI D I
Sbjct: 197 CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 239
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 129 bits (326), Expect = 9e-38
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMY 142
G LR + ++ N KC Q T+NE+ +CAG G C GD GGPL+
Sbjct: 127 GLINYDGLLRVAHLYIMGNEKCSQHHR-GKVTLNESEICAGAEKIGSGPCEGDYGGPLVC 185
Query: 143 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
++GV+ G+ CA PG++ RV Y +WI I
Sbjct: 186 EQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIIL 227
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 129 bits (326), Expect = 9e-38
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
G + L+ Q+ V++N C + + LCAG L+GG DSC GD+GGPL+
Sbjct: 146 GTFGAGLLKEAQLPVIENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCF 204
Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
KY + GV S+G CA PGVY RV+ ++ WI +
Sbjct: 205 EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 245
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 128 bits (325), Expect = 1e-37
Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 79 GSVPGGGPLSPK-----LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCG 133
G + + L ++I VV + +C ++ ++EN+LCAG+L +D+C
Sbjct: 132 GYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV---MSNMVSENMLCAGILGDRQDACE 188
Query: 134 GDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
GDSGGP++ ++++G+VS+G+ C + GVYT+V+ Y+ WI +I
Sbjct: 189 GDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR 239
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 129 bits (326), Expect = 2e-37
Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMY 142
S LR + +V + KC YGA I+ N+LCAG D+C GDSGGPL
Sbjct: 174 NVSGYSSSLREALVPLVADHKCSSPEV-YGADISPNMLCAGYFDCKSDACQGDSGGPLAC 232
Query: 143 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+ Y+ G++S+G C + PGVYTRV NY+ WI D I
Sbjct: 233 EKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 274
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 128 bits (324), Expect = 2e-37
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 79 GSVPGGGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSG 137
G L P+ L+ + ++ + +C+Q YG+ + +LCA DSC GDSG
Sbjct: 141 GKENSTDYLYPEQLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSG 199
Query: 138 GPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
GPL+ L + + G+VS+G+ CA PGVYTRV++++ WI +
Sbjct: 200 GPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 128 bits (323), Expect = 3e-37
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSN---YGATINENILCAGVLSGGKDSCGGDSGGPL 140
G L+ L +V I +VD+ KC + ++ N+LCAG+ SGGKDSC GDSGG L
Sbjct: 134 RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 193
Query: 141 M--YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
+ ++++ G+VS+G C E G GVYT+V NYI WI + IS
Sbjct: 194 VFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 127 bits (322), Expect = 4e-37
Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGA-TINENILCAGVLSGGKDSCGGDSG 137
G G L L+ I V+ +C G I +N +C +G +C GDSG
Sbjct: 133 GRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSG 192
Query: 138 GPLMYPLDTKYYIIGVVS----YGKKCAEVGFPGVYTRVTNYIQWIADN 182
GPL P D ++GV S G +P VYTRV+ Y+ WI DN
Sbjct: 193 GPLNCP-DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN 240
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 128 bits (323), Expect = 6e-37
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
SP L+ ++ ++D C Y I +CAG G D+C GDSGGPLM
Sbjct: 146 ENARRTSPMLQEARVDLIDLGLCNSTRW-YNGRIRSTNVCAGYPEGKIDTCQGDSGGPLM 204
Query: 142 Y--PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+ Y ++G+ S+G CA PGVYT +Y+ WIA I
Sbjct: 205 CKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKIG 249
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 127 bits (321), Expect = 9e-37
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 79 GSVPGGGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSG 137
G L P+ L+ + ++ + +C+Q YG+ + +LCA DSC GDSG
Sbjct: 164 GKENSTDYLYPEQLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSG 222
Query: 138 GPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
GPL+ L + + G+VS+G+ CA PGVYTRV++++ WI +
Sbjct: 223 GPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 268
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 129 bits (326), Expect = 1e-36
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G+ G + L+ ++ ++ N C YG I + CAG GG D+C GDSGG
Sbjct: 252 GNTQYYGQQAGVLQEARVPIISNDVCNGADF-YGNQIKPKMFCAGYPEGGIDACQGDSGG 310
Query: 139 PLMYP----LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
P + ++ + G+VS+G CA PGVYT+V+++ +WI I
Sbjct: 311 PFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 125 bits (316), Expect = 2e-36
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G+ S KL+ + I ++ C ++Y I + CAG L GGKDSC GDSGG
Sbjct: 122 GNTMSSTADSNKLQCLNIPILSYSDCN---NSYPGMITNAMFCAGYLEGGKDSCQGDSGG 178
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
P++ + GVVS+G CAE G PGVY +V + W+ ++
Sbjct: 179 PVV----CNGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 125 bits (317), Expect = 2e-36
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G G G L ++V+ N +C + + E+ +C L +C GD GG
Sbjct: 125 GETKGTGN-DTVLNVALLNVISNQECNIK---HRGRVRESEMCTEGLLAPVGACEGDYGG 180
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
PL + + G++ + CA +P V+TRV+ ++ WI +
Sbjct: 181 PLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMR 226
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 125 bits (316), Expect = 2e-36
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
G +L+ + V+ KC +Y I N+ C G L GGKDSC GDSGGP++
Sbjct: 130 SSGADYPDELQCLDAPVLSQAKCEA---SYPGKITSNMFCVGFLEGGKDSCQGDSGGPVV 186
Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+ GVVS+G CA+ PGVYT+V NY++WI + I+
Sbjct: 187 ----CNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 125 bits (317), Expect = 3e-36
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 79 GSVPGGGPLSP--KLRHVQISVVDNPKCRQIFSNYGA-----TINENILCAGVLSGGKDS 131
G V L L+ +++ ++ C +++ + E+++CAG + GGKD+
Sbjct: 130 GHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDA 189
Query: 132 CGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
C GDSGGPL P++ +Y+ G+VS+G C PGVYT ++Y WI ++
Sbjct: 190 CQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 124 bits (314), Expect = 4e-36
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
P G V I++++ CR + + LCAG+L GGKD+C GDSGGPL+
Sbjct: 130 PTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLI 189
Query: 142 YPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
G+ S+G CA+ P YT+V +++ WI + I+
Sbjct: 190 C----NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIA 229
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 124 bits (314), Expect = 6e-36
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G + GP++ +L+ VVD C Q +G T+ E ++CAG G +C GDSGG
Sbjct: 145 GRLYTNGPIAAELQQGLQPVVDYATCSQRDW-WGTTVKETMVCAG-GDGVISACNGDSGG 202
Query: 139 PLMYPLDTKYYIIGVVS--YGKKCAEVGFPGVYTRVTNYIQWIADNI 183
PL D ++ + G+VS G C P V+TRV+ YI WI +
Sbjct: 203 PLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 119 bits (302), Expect = 6e-36
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 85 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL 144
+L+ + ++ N C++ +G I + ++CAG + G SC GDSGGPL+
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKY---WGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKK 55
Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+ + ++G+VS+G PGVY RVT + W+ ++
Sbjct: 56 NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 124 bits (313), Expect = 9e-36
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMY 142
+L+ + ++ N C++ +G I + ++CAG + G SC GDSGGPL+
Sbjct: 147 TNANTPDRLQQASLPLLSNTNCKKY---WGTKIKDAMICAG--ASGVSSCMGDSGGPLVC 201
Query: 143 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+ + ++G+VS+G PGVY RVT + W+ ++
Sbjct: 202 KKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 243
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 124 bits (313), Expect = 9e-36
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVL---SGGKDSCGGD 135
+ G L+ V + +V+ P C+ + I +N+ CAG D+C GD
Sbjct: 148 WTANVGKGQPSVLQVVNLPIVERPVCKD---STRIRITDNMFCAGYKPDEGKRGDACEGD 204
Query: 136 SGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
SGGP + P + ++Y +G+VS+G+ C G G YT V +WI I
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 123 bits (311), Expect = 1e-35
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G G L+ L+ + VD C +G+T+ +++CAG G + C GDSGG
Sbjct: 133 GLTRTNGQLAQTLQQAYLPTVDYAICSSSSY-WGSTVKNSMVCAG-GDGVRSGCQGDSGG 190
Query: 139 PLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTRVTNYIQWIADNIS 184
PL ++ +Y + GV S+ + C P V+TRV+ YI WI + I+
Sbjct: 191 PLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA 238
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 123 bits (311), Expect = 2e-35
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGG------KDSCGGDS 136
S +L+ + + + +C T+ +N+LCAG G D+C GDS
Sbjct: 145 LSPFYSERLKEAHVRLYPSSRCTSQHL-LNRTVTDNMLCAGDTRSGGPQANLHDACQGDS 203
Query: 137 GGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
GGPL+ D + ++G++S+G C + PGVYT+VTNY+ WI DN+
Sbjct: 204 GGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 250
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 122 bits (309), Expect = 2e-35
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
G L+ ++ ++ + C+ S Y I N+ CAG L GGKDSC GDSGGP++
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVV 182
Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+ G+VS+G CA+ PGVYT+V NY+ WI I+
Sbjct: 183 ----CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 126 bits (319), Expect = 2e-35
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSN---YGATINENILCAGVLSGGKDSCGGDSGGPL 140
G L+ L +V I +VD+ KC + ++ N+LCAG+ SGGKDSC GDSGG L
Sbjct: 295 RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 354
Query: 141 M--YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
+ ++++ G+VS+G C E G GVYT+V NYI WI + IS
Sbjct: 355 VFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 122 bits (308), Expect = 3e-35
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G GGPLS L+ + VD+ C +G+T+ ++CAG G C GDSGG
Sbjct: 133 GKTSTGGPLSDSLKQAWLPSVDHATCSSSGW-WGSTVKTTMVCAG--GGANSGCNGDSGG 189
Query: 139 PLMYPLDTKYYIIGVVS--YGKKCAEVGFPGVYTRVTNYIQWIADNI 183
PL ++ YY+ GV S C P V+TRV+ YI W+ +
Sbjct: 190 PLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 121 bits (307), Expect = 3e-35
Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
GG L V + +V CR + I + CAGV SGGKDSC GDSGGP++
Sbjct: 128 EGGSSTPVNLLKVTVPIVSRATCRAQYGTSA--ITNQMFCAGVSSGGKDSCQGDSGGPIV 185
Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
D+ +IG VS+G CA + GVY V +I
Sbjct: 186 ---DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY 223
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 123 bits (311), Expect = 4e-35
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGD 135
+ G L+ V + +V+ P C+ + I +N+ CAG D+C GD
Sbjct: 178 WTANVGKGQPSVLQVVNLPIVERPVCKD---STRIRITDNMFCAGYKPDEGKRGDACEGD 234
Query: 136 SGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
SGGP + P + ++Y +G+VS+G+ C G G YT V +WI I
Sbjct: 235 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 121 bits (307), Expect = 5e-35
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G GG LS LR + + V+D C + +++ +++C S + C GDSGG
Sbjct: 126 GLTHQGGRLSRVLRELDLQVLDTRMCNNS-RFWNGSLSPSMVCLAADSKDQAPCKGDSGG 184
Query: 139 PLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNI 183
PL+ + GV+S+ + C ++ P V T V Y+ WI
Sbjct: 185 PLVC--GKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVT 228
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 124 bits (314), Expect = 8e-35
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 83 GGGPLSPKLRHVQISVVDNPKCRQIFSN----YGATINENILCAGVLSGGKDSCGGDSGG 138
S L+ +Q+ VD KC+ N +++ +CAG GKD+C GD G
Sbjct: 276 SRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGE-QGKDTCTGDGGS 334
Query: 139 PLMYPL---DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
PL P ++Y +G+V++G C + PGVY V ++ WI +
Sbjct: 335 PLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQ 383
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 121 bits (305), Expect = 1e-34
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 83 GGGPLSPKLRHVQISVVDNPKCRQIFSN--YGATINENILCAGVLSGGKDSCGGDSGGPL 140
S L +VVD C + + I + + CAG GD+G P
Sbjct: 131 KSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPA 190
Query: 141 MYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+ ++GV SY FP V+ RV Y+ I D IS
Sbjct: 191 VQ----NGTLVGVASYISSMPS-EFPSVFLRVGYYVLDIKDIIS 229
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 120 bits (304), Expect = 2e-34
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
P L+ V + ++ N C + + + +LCAG + GG +C DSGGPL+
Sbjct: 141 PIKFKYPDDLQCVNLKLLPNEDCD---KAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLI 197
Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
+ G+ S+G + C E P VYT++ + WI + ++
Sbjct: 198 ----CDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 237
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 120 bits (304), Expect = 2e-34
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSG--GKDSCGGDSGGPL 140
GG LR+V +++ N C ++ TI ++++CA +G +DSC GDSGGPL
Sbjct: 135 GGVCCPAVLRYVTLNITTNAFCDAVY--TSDTIYDDMICATDNTGMTDRDSCQGDSGGPL 192
Query: 141 MYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+ ++G+VS+G CA G+PGVY+RV + WI D I+
Sbjct: 193 SVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITDTIT 236
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 120 bits (303), Expect = 2e-34
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
P L+ V I+++ N C Y + + +LCAG + GGKD+C DSGGPL+
Sbjct: 138 PTRWQKPDDLQCVFITLLPNENCA---KVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLI 194
Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
+ G SYG C + G P +YT + + WI D +
Sbjct: 195 C----DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 120 bits (302), Expect = 2e-34
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G P L+ Q++VVD +CR + ++ + CA G GD+G
Sbjct: 130 GDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPI--FLSLQVFCAQ--KVGVSLESGDAGD 185
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
P + + ++GV +Y K E G P V+T+V +Y+ WI D I
Sbjct: 186 PTVQ----QDTLVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDII 225
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 120 bits (303), Expect = 2e-34
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
P L+ V + ++ N +C+ + + + +LC G L GGKD+C GDSGGPLM
Sbjct: 139 PENFSFPDDLQCVDLKILPNDECK---KAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPLM 195
Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
+ GV S+G C P V RV +Y++WI D I+
Sbjct: 196 ----CDGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA 235
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 119 bits (302), Expect = 3e-34
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
L V + ++ C ++ Y + ++LCAG+ K++C GDSGGPL+
Sbjct: 125 SPDVTFPSDLMCVDVKLISPQDCTKV---YKDLLENSMLCAGIPDSKKNACNGDSGGPLV 181
Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
+ + G+VS+G C + PGVYT+V + +WI D +
Sbjct: 182 C----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMK 221
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 120 bits (302), Expect = 3e-34
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G + GGPL KL+ + VD C Q +G T+ + ++CAG + C GDSGG
Sbjct: 133 GRLYTGGPLPDKLQQALLPTVDYEHCSQWDW-WGITVKKTMVCAG--GDTRSGCNGDSGG 189
Query: 139 PLMYPL-DTKYYIIGVVS--YGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
PL P D + + GV S C + P V+TRV+ +I WI + I+
Sbjct: 190 PLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIA 238
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 119 bits (300), Expect = 4e-34
Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
G ++ I +V +C Y I +N+LCAG GKDSC GDSGGPL+
Sbjct: 127 DGDFPDTIQCAYIHLVSREECE---HAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLV-- 181
Query: 144 LDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
++ G+VS+G C PGVYT V Y WI I
Sbjct: 182 --CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 119 bits (301), Expect = 4e-34
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFS-NYGATINENILCAGVLSGGKDSCGGDSGGPL 140
P S LR V ++V+ C N I ++++CAG G KDSC GD+GGPL
Sbjct: 135 PDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPL 194
Query: 141 MYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT-NYIQWIADNI 183
+ K +VS G +C PG+YT +T Y WI N+
Sbjct: 195 IC----KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 118 bits (299), Expect = 6e-34
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
G + L+ V +SVV C Y + ++ CAG KDSC GDSGGPL+
Sbjct: 128 NGRMPTVLQCVNVSVVSEEVCS---KLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPLIC- 183
Query: 144 LDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
Y+ G+VS+G C +VG PGVYT + + +WI +
Sbjct: 184 ---NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ 222
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 118 bits (299), Expect = 8e-34
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G + G L+ Q+ VVD C + +G+T+ N++CAG G SC GDSGG
Sbjct: 133 GRLQTNGASPDILQQGQLLVVDYATCSKPGW-WGSTVKTNMICAG-GDGIISSCNGDSGG 190
Query: 139 PLMYPL-DTKYYIIGVVSYGKK--CAEVGFPGVYTRVTNYIQWIADNIS 184
PL + ++ + G+VS+G C P V+TRV+NYI WI I+
Sbjct: 191 PLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIA 239
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 118 bits (299), Expect = 8e-34
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
P KL+ V + V+ N C Q+ + + + +LCAG +GGK +C GDSGGPL+
Sbjct: 138 PEEFLTPKKLQCVDLHVISNDVCAQV---HPQKVTKFMLCAGRWTGGKSTCSGDSGGPLV 194
Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
+ G+ S+G + CA P +YT+V +Y +WI D I
Sbjct: 195 ----CNGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV 234
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 118 bits (298), Expect = 2e-33
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 10/114 (8%)
Query: 79 GSVPGGGPLSP--KLRHVQISVVDNPKCRQIFSNYG------ATINENILCAGVLSGGKD 130
G V PL P L+ V++ +++N C + I +++LCAG + +D
Sbjct: 131 GDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRD 188
Query: 131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
SC GDSGGPL+ ++ + GVVS+G+ CA+ PG+YTRVT Y+ WI +
Sbjct: 189 SCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVP 242
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 121 bits (306), Expect = 2e-33
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGD 135
+ G L+ V + +V+ P C+ + I +N+ CAG D+C GD
Sbjct: 313 WTANVGKGQPSVLQVVNLPIVERPVCKD---STRIRITDNMFCAGYKPDEGKRGDACEGD 369
Query: 136 SGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
SGGP + P + ++Y +G+VS+G+ C G G YT V +WI I
Sbjct: 370 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 420
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 118 bits (297), Expect = 2e-33
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
P I+++D+ C+ + LCAG+L GGKD+CGGDSGGPL+
Sbjct: 128 PIKVTYPDVPYCAYINLLDDAVCQAGYPEL--LTEYRTLCAGILEGGKDTCGGDSGGPLI 185
Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
G+VS+G C + PGVYT+V +Y WI I+
Sbjct: 186 C----NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 118 bits (297), Expect = 2e-33
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 85 GPLSPKLRHVQISVVDNPKCRQIF--SNYGATINENILCAGVLSGGKDSCGGDSGGPLM- 141
++ LR V++ V + C N ++N+ CAG S +D+C GDSGG
Sbjct: 138 EKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAV 197
Query: 142 -YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
P ++ G+VS+G C+ G YT+V NY+ WI +
Sbjct: 198 RDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 238
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 117 bits (296), Expect = 2e-33
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
S L+ V++ + N KC Y + E +LCA C GDSGG L+
Sbjct: 138 TFTNRGSGTLQCVELRLQSNEKCA---RAYPEKMTEFVLCATHRDDSGSICLGDSGGALI 194
Query: 142 YPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 184
G+ S+G +CA+ V+T+V + +WI + I
Sbjct: 195 ----CDGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 117 bits (295), Expect = 2e-33
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G V G L+HV + V+D C + + I E ++CA S +DSC GD+GG
Sbjct: 129 GIVNHAGRRPDSLQHVLLPVLDRATCNRRTH-HDGAITERLMCAE--SNRRDSCKGDAGG 185
Query: 139 PLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
PL+ + GVV+ G + C PG+YTRV +Y WI ++
Sbjct: 186 PLV----CGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA 228
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 117 bits (295), Expect = 3e-33
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
P +S L+ V I ++ N KC Y + + +LCAG + GGKD+C GDSGGPL+
Sbjct: 136 PSEMVVSHDLQCVNIHLLSNEKCI---ETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLI 192
Query: 142 YPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
+ G+ S G CA+ P +Y ++ + WI +
Sbjct: 193 ----CDGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 117 bits (295), Expect = 3e-33
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
I +V + C ++ + LCAG+L GG+D+C GDSGGPL+
Sbjct: 130 TTTYPDVPHCTNIFIVKHKWCEPLY--PWVPADSRTLCAGILKGGRDTCHGDSGGPLIC- 186
Query: 144 LDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
+ G+V+ G + C + P VYT+V +Y WI I+
Sbjct: 187 ---NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIA 225
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 116 bits (294), Expect = 3e-33
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G + P + KL+ V + V KC F NY I +CAG S K+S GDSGG
Sbjct: 128 GRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNY---IPFTQICAGDPSKRKNSFSGDSGG 184
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
PL+ G+VSYG+ P VYTR+++++ WI +
Sbjct: 185 PLVC----NGVAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTM 223
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 116 bits (292), Expect = 6e-33
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G G S L+ V+++V ++ KC + LC G K S GDSGG
Sbjct: 128 GQTAPLGKHSHTLQEVKMTVQEDRKCESDL--RHYYDSTIELCVGDPEIKKTSFKGDSGG 185
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
PL+ G+VSYG+ P T+V++++ WI +
Sbjct: 186 PLVC----NKVAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTM 224
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 117 bits (294), Expect = 1e-32
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
G L L +++V+ +C Q+ T+ C + G +
Sbjct: 183 GTDLGNSLTTRPVTLVEGEECGQV---LNVTVTTRTYCER---SSVAAMHWMDGSVVTRE 236
Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+++ GV+ + T+V+ Y W ++
Sbjct: 237 HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 276
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 115 bits (290), Expect = 2e-32
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIF-SNYGATINENILCAGVLSGGKDSCGGDSG 137
G S LR V+I+++D C N+ I N++CAG L GG+DSC GDSG
Sbjct: 126 GRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSG 185
Query: 138 GPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTRVT-NYIQWIADNI 183
PL+ + GV S+G + C + PGVY ++ ++ WI I
Sbjct: 186 SPLLC----EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 114 bits (289), Expect = 2e-32
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G V G L V+++V + C F + N +C G S DSGG
Sbjct: 129 GKVTPDGEFPKTLHEVKLTVQKDQVCESQF--QSSYNRANEICVGDSKIKGASFEEDSGG 186
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
PL+ K G+VSYG+ P V+TRV +++ WI +
Sbjct: 187 PLVC----KRAAAGIVSYGQTDG--SAPQVFTRVLSFVSWIKKTM 225
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 115 bits (290), Expect = 2e-32
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
L I+++D C+ + + LCAG+L GGKD+C GDSGGPL+
Sbjct: 127 SPNATLPDVPHCANINILDYAVCQAAYKG----LAATTLCAGILEGGKDTCKGDSGGPLI 182
Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
G++S G CA+ PG+YT+V +Y WI IS
Sbjct: 183 C----NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIIS 222
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 117 bits (295), Expect = 2e-32
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 75 PGCLGSVPG----GGPLSPKLRHVQISVVDNPKCRQIF--SNYGATINENILCAGVLSGG 128
G +G V G ++ LR V++ V + C N ++N+ CAG S
Sbjct: 213 LGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLK 272
Query: 129 KDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
+D+C GDSGG P ++ G+VS+G C+ G YT+V NY+ WI +
Sbjct: 273 QDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 327
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 114 bits (287), Expect = 4e-32
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
+S LR V + ++ N C + YG + + +C +GGK +C GDSGGPL
Sbjct: 129 DSALGISDVLRQVDVPIMSNADCDAV---YG-IVTDGNICIDS-TGGKGTCNGDSGGPLN 183
Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI 183
Y G+ S+G E G+P +TRVT ++ WI
Sbjct: 184 Y----NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 117 bits (296), Expect = 4e-32
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 85 GPLSPKLRHVQISVVDNPKCRQIF--SNYGATINENILCAGVLSGGKDSCGGDSGGPLM- 141
++ LR V++ V + C N ++N+ CAG S +D+C GDSGG
Sbjct: 295 EKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAV 354
Query: 142 -YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
P ++ G+VS+G C+ G YT+V NY+ WI +
Sbjct: 355 RDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 395
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 119 bits (300), Expect = 5e-32
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G L+ ++ ++ N C + + + + CAG G D+C GDSGG
Sbjct: 455 GREKDNER-VFSLQWGEVKLISN--CSKFY--GNRFYEKEMECAGTYDGSIDACKGDSGG 509
Query: 139 PLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
PL+ + Y+ GVVS+G+ C + FPGVYT+V NY WI+ ++
Sbjct: 510 PLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHVG 556
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 113 bits (285), Expect = 7e-32
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
L ++ + KC Y I E ++CAG S G D+C GDSGGPL+
Sbjct: 130 SPQENFPNTLNCAEVKIYSQNKCE---RAYPGKITEGMVCAGS-SNGADTCQGDSGGPLV 185
Query: 142 YPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNI 183
+ G+ S+G C + PGVYT++ Y WI +
Sbjct: 186 ----CDGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 111 bits (280), Expect = 7e-32
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 76 GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
G + P +++ VQ++++ N C + + E++LCAG L GGKD+C GD
Sbjct: 47 GSIEPGPDDFEFPDEIQCVQLTLLQNTFCA---DAHPDKVTESMLCAGYLPGGKDTCMGD 103
Query: 136 SGGPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 184
SGGPL+ G+ S+G C P +YT++ Y+ WI D I+
Sbjct: 104 SGGPLIC----NGMWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 113 bits (285), Expect = 8e-32
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
GS GG L+ +++ V +C + + ++ +C G+ +C GDSGG
Sbjct: 126 GSTRLGGNTPNALQEIELIVHPQKQCERDQWR----VIDSHICTL-TKRGEGACHGDSGG 180
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
PL+ IG+VS+G CA +G P VYTRV++++ WI N+
Sbjct: 181 PLVA----NGAQIGIVSFGSPCA-LGEPDVYTRVSSFVSWINANLK 221
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 113 bits (285), Expect = 8e-32
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMY 142
+ LR VQ+ V + +C +IF +Y +C G K + GDSGGPL+
Sbjct: 131 SMRRGTDTLREVQLRVQRDRQCLRIFGSY---DPRRQICVGDRRERKAAFKGDSGGPLLC 187
Query: 143 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
G+VSYGK P V+TRV++++ WI +
Sbjct: 188 ----NNVAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTTM 222
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 112 bits (284), Expect = 9e-32
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G P S LR V++ ++D C Y + +C G + + + GDSGG
Sbjct: 129 GKTGVRDPTSYTLREVELRIMDEKACVD----YRYYEYKFQVCVGSPTTLRAAFMGDSGG 184
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
PL+ G+VSYG A+ P ++TRV+ Y+ WI I+
Sbjct: 185 PLLC----AGVAHGIVSYGHPDAK--PPAIFTRVSTYVPWINAVIN 224
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 112 bits (284), Expect = 1e-31
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G P S L+ V++ ++D C S++ + LC G K + GDSGG
Sbjct: 129 GRTGVLKPGSDTLQEVKLRLMDPQAC----SHFRDFDHNLQLCVGNPRKTKSAFKGDSGG 184
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
PL+ G+VSYG+ A+ P V+TR+++Y WI +
Sbjct: 185 PLLC----AGVAQGIVSYGRSDAK--PPAVFTRISHYRPWINQIL 223
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 115 bits (289), Expect = 1e-31
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
G L L +++V+ +C Q+ T+ C + G +
Sbjct: 224 GTDLGNSLTTRPVTLVEGEECGQV---LNVTVTTRTYCER---SSVAAMHWMDGSVVTRE 277
Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
+++ GV+ + T+V+ Y W ++
Sbjct: 278 HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 317
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 112 bits (283), Expect = 2e-31
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
L+ + ISV+ +C Y I++ + CAG G+DSC GDSGGP++
Sbjct: 129 SPQVHFPKVLQCLNISVLSQKRCE---DAYPRQIDDTMFCAGD-KAGRDSCQGDSGGPVV 184
Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
+ G+VS+G CA PGVYT + + +WI + I
Sbjct: 185 C----NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 118 bits (296), Expect = 2e-31
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
G + L+ Q+ V++N C + + LCAG L+GG DSC GDSGGPL+
Sbjct: 690 GTFGAGLLKEAQLPVIENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCF 748
Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
KY + GV S+G CA PGVY RV+ ++ WI +
Sbjct: 749 EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 789
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 112 bits (283), Expect = 1e-30
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 84 GGPLSPKLRHVQISVVDNPKCRQIFSN------YGATINENILCAGVLSGGKDSCGGDSG 137
+ +L+ ++ V KC+++ N++CAG G DSC GDSG
Sbjct: 220 KRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAG-GEKGMDSCKGDSG 278
Query: 138 GPLMYPL---DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
G TK+Y G+VS+G +C G+YTRV NY+ WI +
Sbjct: 279 GAFAVQDPNDKTKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQ 325
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 109 bits (274), Expect = 3e-30
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 17/106 (16%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G + ++ L+ + ++VV + + +C V C GDSG
Sbjct: 128 GLLGRNRGIASVLQELNVTVVTS------------LCRRSNVCTLVRGRQAGVCFGDSGS 175
Query: 139 PLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI 183
PL+ I G+ S+ + CA +P + V ++ WI I
Sbjct: 176 PLVC----NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 109 bits (274), Expect = 3e-30
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 88 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTK 147
+ L++ V+DN +C Q + I E+ +C S GK C GDSGGP + K
Sbjct: 135 TVILQYTYNLVIDNDRCAQEY--PPGIIVESTICGD-TSDGKSPCFGDSGGPFVL--SDK 189
Query: 148 YYIIGVVSYGKKCA-EVGFPGVYTRVTNYIQWIADN 182
+IGVVS+ E G P ++RVT+Y+ WI N
Sbjct: 190 NLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQN 225
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 108 bits (273), Expect = 4e-30
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 17/106 (16%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G V P + L+ + ++VV + +C V C GDSGG
Sbjct: 131 GRVGAHDPPAQVLQELNVTVVTF------------FCRPHNICTFVPRRKAGICFGDSGG 178
Query: 139 PLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI 183
PL+ I G+ S+ CA FP +TRV Y+ WI +
Sbjct: 179 PLIC----DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 108 bits (272), Expect = 6e-30
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
GS GG LS R V ++V +C N +C GVL+ C GD G
Sbjct: 129 GSQRSGGRLSRFPRFVNVTVTPEDQC-----------RPNNVCTGVLTRRGGICNGDGGT 177
Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
PL+ + GV S+ G P +TRV + WI ++
Sbjct: 178 PLVC----EGLAHGVASFSLGPCGRG-PDFFTRVALFRDWIDGVLN 218
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 102 bits (255), Expect = 5e-26
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 24/129 (18%)
Query: 80 SVPGGGPLSPKLRHVQISVVDNPKCRQ------------IFSNYGATINENILCAGVLSG 127
KL ++ + + K + + LC G +S
Sbjct: 362 KALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSP 421
Query: 128 --GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVG--------FPGVYTRVTNY 175
++C GDSGGPL+ +++ +GV+S+G C + +
Sbjct: 422 YADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 481
Query: 176 IQWIADNIS 184
+ W+ + +
Sbjct: 482 LPWLKEKLQ 490
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 97.3 bits (242), Expect = 3e-24
Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 35/140 (25%)
Query: 79 GSVPGGGPLSP--KLRHVQISV-----VDNPKCRQIFSN----------YGATINENILC 121
+ + L ++++ V+ C ++ S + + LC
Sbjct: 363 ELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLC 422
Query: 122 AGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG----------------- 164
+G + C G+SGG + +++ +G+VS+G +G
Sbjct: 423 SGTQ-EDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPP 481
Query: 165 FPGVYTRVTNYIQWIADNIS 184
+ + W+ ++
Sbjct: 482 PRDFHINLFRMQPWLRQHLG 501
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 94.0 bits (233), Expect = 6e-23
Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 24/128 (18%)
Query: 80 SVPGGGPLSPKLRHVQISVVDNPKC------------RQIFSNYGATINENILCAGVLSG 127
KL ++ + + K + + LC G +S
Sbjct: 604 KALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSP 663
Query: 128 --GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA----------EVGFPGVYTRVTNY 175
++C GDSGGPL+ +++ +GV+S+G + +
Sbjct: 664 YADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 723
Query: 176 IQWIADNI 183
+ W+ + +
Sbjct: 724 LPWLKEKL 731
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 45.4 bits (107), Expect = 2e-06
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK 159
D + S + + + + D+ G+SG + LD I+GV + G
Sbjct: 135 DKMRSTGKVSQWEMSGSVTREDTNLAYYTIDTFSGNSGSAM---LDQNQQIVGVHNAGYS 191
Query: 160 CAEVGFPGVYTRVTN-YIQWIADNIS 184
G + T ++++I +
Sbjct: 192 N---GTINGGPKATAAFVEFINYAKA 214
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 38.1 bits (88), Expect = 6e-04
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 130 DSCGGDSGGPLMYPLDTKYYIIGVVSYG 157
+ GG SGGP T SYG
Sbjct: 163 NMTGGSSGGPWFLGNGTGGAQNSTNSYG 190
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 29.6 bits (66), Expect = 0.54
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 130 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ 177
+ GG+SG P+ + K +IG+ G G + V N+++
Sbjct: 163 STTGGNSGSPV---FNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLK 207
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 28.3 bits (63), Expect = 1.0
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 123 GVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
G+ + GGDSGGP + T GV S G G + +
Sbjct: 127 GLTRTTACAEGGDSGGPWL----TGSQAQGVTSGGTGDCRSGGITFFQPINP 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.2
Identities = 36/179 (20%), Positives = 51/179 (28%), Gaps = 74/179 (41%)
Query: 1 MFLAAGPDSSLHVI---------PSISDDSHYQILHLEQRKKSKACKPSQLGGVAR-LP- 49
+ +GP SL+ + PS D S +I +RK L R LP
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQS--RIPF-SERK---------LKFSNRFLPV 423
Query: 50 ---------GPAGPGCSLPWGEFRLDLSSGGLRGPGC-LGSVP------GGGPLSPKLRH 93
PA DL + + +P G LR
Sbjct: 424 ASPFHSHLLVPASD-------LINKDLVKNNVSFNAKDIQ-IPVYDTFDGSD-----LRV 470
Query: 94 VQISVVDNPKCRQIFS---------NYGATINENILCAGVLSGGKDSCGGDSG-GPLMY 142
+ S+ + I + AT +IL G GG SG G L +
Sbjct: 471 LSGSISER-IVDCIIRLPVKWETTTQFKAT---HILDFGP--------GGASGLGVLTH 517
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A
{Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Length = 241
Score = 28.5 bits (64), Expect = 1.2
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
Y L + Y + V GK GF G+ + WI
Sbjct: 178 YKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWI 215
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 27.9 bits (62), Expect = 1.6
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 110 NYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY 169
N + + G++ + GDSGG L +G+ S G G Y
Sbjct: 111 NATVNYGSSGIVYGMIQTNVCAQPGDSGGSLF----AGSTALGLTSGGSGNCRTGGTTFY 166
Query: 170 TRVTN 174
VT
Sbjct: 167 QPVTE 171
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 27.5 bits (61), Expect = 2.2
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
S GGDSGG +G+ S C+ ++ VT
Sbjct: 138 SAGGDSGGAHF----AGSVALGIHSGSSGCSGTAGSAIHQPVTE 177
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 27.6 bits (61), Expect = 2.2
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 133 GGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT-RVTNYIQWIAD 181
GDSGG + GV+S G + G+ + ++ + +
Sbjct: 140 RGDSGGSWITSAGQ---AQGVMSGGNVQSNGNNCGIPASQRSSLFERLQP 186
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 27.3 bits (59), Expect = 2.8
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
G ++ +V + N F +G L G + G SG
Sbjct: 137 RDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGS 196
Query: 139 PLMYPLDTKYYIIGVVSYGK-KCAEVG--FPGVYTRVT 173
P+ + ++G + G C+ G Y RV
Sbjct: 197 PIY---SPEKRVLGQLHGGPSSCSATGTNRSDQYGRVF 231
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 26.8 bits (59), Expect = 3.2
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 175
+ GDSGG + + GV S G G Y V
Sbjct: 138 AEPGDSGGSFI----SGTQAQGVTSGGSGNCRTGGTTFYQEVNPM 178
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 26.8 bits (59), Expect = 4.1
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 109 SNYGATIN-ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 167
+ +++ G++ + GDSGG L+ GV S G G
Sbjct: 109 TALNSSVTYPEGTVRGLIRTTVCAEPGDSGGSLL----AGNQAQGVTSGGSGNCRTGGTT 164
Query: 168 VYTRVTN 174
+ V
Sbjct: 165 FFQPVNP 171
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 26.3 bits (58), Expect = 5.1
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 109 SNYGATIN--ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFP 166
+ AT+N + G++ + GDSGGPL + IG+ S G G
Sbjct: 112 TALNATVNYGGGDVVYGMIRTNVCAEPGDSGGPLY----SGTRAIGLTSGGSGNCSSGGT 167
Query: 167 GVYTRVTN 174
+ VT
Sbjct: 168 TFFQPVTE 175
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 25.9 bits (56), Expect = 8.6
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 48 LPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP-GGGPLSPKLRHVQISVVDNPKCRQ 106
L GP GPG + + G GP S P G P L H + D + +
Sbjct: 75 LRGPTGPGTTSL----APAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEE 130
Query: 107 I 107
+
Sbjct: 131 V 131
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex,
vasoconstrictor, glycoprotein, hypertension, serpins;
4.33A {Homo sapiens}
Length = 383
Score = 25.8 bits (57), Expect = 9.4
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
Y L + Y+ KK + + W
Sbjct: 320 YTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWA 357
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate;
2.35A {Homo sapiens}
Length = 351
Score = 25.8 bits (57), Expect = 9.5
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
Y L Y + G + GF G+ WI
Sbjct: 279 YTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWI 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.141 0.448
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,864,481
Number of extensions: 165264
Number of successful extensions: 610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 114
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)