RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17334
(188 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 62.3 bits (152), Expect = 4e-12
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 80 CVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEH 130
VIL++K +R TNIFL+NL++ADL+ LL P L W G+
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWAL--YYLVGGDWPFGDA 49
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 53.1 bits (127), Expect = 1e-08
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EEEEEEE EEEE+EEEEE+EEE+EEE E+ E E +++Q I
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQAI 907
Score = 52.3 bits (125), Expect = 3e-08
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+++EEEEEEEE EEEE+EEEEE+EEE+E EE + E QK+
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 50.8 bits (121), Expect = 1e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 17/83 (20%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEK-----------------EEEEEKEEE 158
E + ET + + E+E EN+ E K EEEEE+EEE
Sbjct: 813 DEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEE 872
Query: 159 KEEEEEKEEQKEEEEQKEEQQIS 181
+EEEEE+EE++EEEE++ E+ +S
Sbjct: 873 EEEEEEEEEEEEEEEEENEEPLS 895
Score = 47.3 bits (112), Expect = 2e-06
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ EEEE+EEEEE+EEE+EEEEE+EE++ EE E +R+
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQ 903
Score = 43.1 bits (101), Expect = 4e-05
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
G+ +EEEEEEEE EEEE+EEEEE+E E+ E E ++++
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 35.4 bits (81), Expect = 0.013
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EE E+E E E E K E E + + KE E E E + E +E ++E +I
Sbjct: 739 EEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI 783
Score = 35.0 bits (80), Expect = 0.022
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 30/94 (31%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKE--------------- 160
E+ EH T+ E++E E + E + ++ E ++E
Sbjct: 789 GEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD 848
Query: 161 ---------------EEEEKEEQKEEEEQKEEQQ 179
EEEE+EE++EEEE++EE++
Sbjct: 849 EKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882
Score = 33.0 bits (75), Expect = 0.092
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
GE E+E E E E E E E E + E+E E E + +E + K E +
Sbjct: 660 GEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETE 711
Score = 32.7 bits (74), Expect = 0.11
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEE-EEKEEEKEEEEEKEEQKEEEEQK 175
E +K E GE + + E+E E E E +E + + E + EE E E E E + E+E +
Sbjct: 672 ETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGE 731
Query: 176 EEQQ 179
E
Sbjct: 732 IETG 735
Score = 32.7 bits (74), Expect = 0.11
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E + K ET E E E+E E E EE EE E+E E E E + + E E ++
Sbjct: 703 EADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRK 762
Query: 177 EQQI 180
E +
Sbjct: 763 ETEH 766
Score = 32.3 bits (73), Expect = 0.14
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 101 IADLMVLLVCTPTVLVEVNSKPE-TWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEK 159
+A +M L + + E E T + GE + + E EE E E++ E E K E +
Sbjct: 621 VAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENE 680
Query: 160 EEEEEKEEQKEEEEQKEEQQ 179
E E E+K E+E + E +
Sbjct: 681 SEGEIPAERKGEQEGEGEIE 700
Score = 31.1 bits (70), Expect = 0.32
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ ++ E + E+E E E EE +E E+E E E E + E E + + +E +
Sbjct: 706 HKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETE 765
Query: 176 EEQQISRRVADKD 188
E + + +
Sbjct: 766 HEGETEAEGKEDE 778
Score = 30.7 bits (69), Expect = 0.44
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE E E E E EE E E+E E E K E E + E R+ +
Sbjct: 647 EEGERPTEAEGENGEESGGEAEQEGETET-KGENESEGEIPAERKGEQEG 695
Score = 30.7 bits (69), Expect = 0.50
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ K E GE + + + E E E E + E E + E E E E E+ EE E +
Sbjct: 685 IPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDE 744
Query: 176 EEQQI 180
E +
Sbjct: 745 GEGEA 749
Score = 30.3 bits (68), Expect = 0.62
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + + E E EE E+E E + E E E E E EE EE ++E E + E
Sbjct: 696 EGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE 750
Score = 30.0 bits (67), Expect = 0.81
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
QE E E + E E E E++ E+E E E E ++ + + + E +
Sbjct: 669 QEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAE 713
Score = 30.0 bits (67), Expect = 0.91
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKE-EEEEKEEEKEEEEEKEEQKEEEEQK 175
E+ +K + + E E E E E+E E E E+ EE E+E E E + + E +
Sbjct: 698 EIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVET 757
Query: 176 E 176
E
Sbjct: 758 E 758
Score = 29.2 bits (65), Expect = 1.7
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E Q GE + + E E E E + ++E E + E KE + + E + EE E + E +
Sbjct: 666 EAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETE 722
Score = 28.8 bits (64), Expect = 2.2
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 135 QEEEEEEEENEEE-----EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ E E + ENE E E++ E+E E E E +E + + E E+ E + + +D
Sbjct: 670 EGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTED 728
Score = 28.0 bits (62), Expect = 3.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEE 162
+S+ E + E +EEEEEEEE EE E+ E E ++++
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 49.0 bits (117), Expect = 3e-07
Identities = 14/53 (26%), Positives = 34/53 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E+++ EE +++ E+E K+ EKE +E++K+ EE ++ + ++ A++
Sbjct: 84 KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136
Score = 47.1 bits (112), Expect = 1e-06
Identities = 13/53 (24%), Positives = 37/53 (69%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E+ +++E+ + EE ++++ E+E+ ++ EKE +E++K+ ++ +++ A K
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALK 130
Score = 44.4 bits (105), Expect = 1e-05
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
Q EE ++++ E+E+ ++ EKE +E++K Q EE ++ +
Sbjct: 87 QQAEELQQKQAAEQERLKQLEKERLAAQEQKK--QAEEAAKQAALK 130
Score = 41.3 bits (97), Expect = 1e-04
Identities = 17/75 (22%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE--- 170
V+V+ + E + + + + EE+ + +E+++ EE ++++ E+E K+ +KE
Sbjct: 53 VMVDPGAVVEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLA 112
Query: 171 EEEQKEEQQISRRVA 185
+EQK++ + + + A
Sbjct: 113 AQEQKKQAEEAAKQA 127
Score = 39.0 bits (91), Expect = 7e-04
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE--EKEEQKEEEEQKEEQ 178
K + Q E + Q E+E + E+E+ +E++++ EE +QK+ EE +
Sbjct: 82 KKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKA 141
Score = 37.1 bits (86), Expect = 0.004
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
QE ++ E+ +E++++ EE ++ K++Q EE K
Sbjct: 100 QERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144
Score = 35.2 bits (81), Expect = 0.013
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+E +E+ ++ E+ ++ ++K+ EE + + K E + R
Sbjct: 108 KERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
Score = 34.0 bits (78), Expect = 0.035
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
QE++++ EE ++ ++++ EE + + K E E K +++ A
Sbjct: 114 QEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAA 165
Score = 30.2 bits (68), Expect = 0.59
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ E +++ E E ++ + ++K E E + E ++K E + ++ A +
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAE 214
Score = 28.2 bits (63), Expect = 2.6
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ E +++ E E + + ++K E E K++ E ++K
Sbjct: 178 KAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 27.8 bits (62), Expect = 3.8
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E ++ E E ++ E +K+ E E + E +K+ + +++ A +
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAE 214
Score = 26.7 bits (59), Expect = 9.4
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ E E ++ E K++ E + K E K+ + E E +K+ +++ A +
Sbjct: 170 KAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKK-KAEAEAKKKAAAEAKKKAAAE 222
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 47.2 bits (113), Expect = 1e-06
Identities = 20/63 (31%), Positives = 43/63 (68%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
++ E +EEE++E++ + +++EE+EEE++E++E+E+++EEEE +EE++
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Query: 185 ADK 187
K
Sbjct: 473 KKK 475
Score = 46.8 bits (112), Expect = 2e-06
Identities = 20/54 (37%), Positives = 41/54 (75%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ E++ EEE +E++K+ K++E+EEEEEKE+++EE+E++EE+ + +++
Sbjct: 418 KAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 45.3 bits (108), Expect = 6e-06
Identities = 22/46 (47%), Positives = 39/46 (84%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ +++ EEEE+E+E+++EE++EEEEE EE+KEEEE+K+++Q +
Sbjct: 433 KAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 44.9 bits (107), Expect = 8e-06
Identities = 20/47 (42%), Positives = 36/47 (76%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
I E+ E++ E E++EK+++ ++KEEEEE+E++K+EEE++EE
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
Score = 44.5 bits (106), Expect = 9e-06
Identities = 20/54 (37%), Positives = 39/54 (72%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++ EEE++E +++ ++++EEE+EE+E+KEE+KEEEE++ E++ K
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Score = 44.5 bits (106), Expect = 9e-06
Identities = 18/54 (33%), Positives = 40/54 (74%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+++ EEE++ ++++ ++KEEE+EEE+EK+E+++EEE++E ++ +K
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 39.5 bits (93), Expect = 5e-04
Identities = 16/53 (30%), Positives = 38/53 (71%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E+ E++ EE+++++++ +K+EEEE+EE++++EE+KEE++ ++
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 39.5 bits (93), Expect = 5e-04
Identities = 15/44 (34%), Positives = 35/44 (79%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
T++ ++ E+ E++ +EE++EK+++ ++KEE++EEE++K+E
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Score = 38.4 bits (90), Expect = 0.001
Identities = 14/61 (22%), Positives = 39/61 (63%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
G + + ++ E+ ++ E+E++E+K++ ++++EE++EE+E+KEE++ +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 188 D 188
+
Sbjct: 464 E 464
Score = 35.3 bits (82), Expect = 0.012
Identities = 12/60 (20%), Positives = 41/60 (68%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E ++ +++ ++ ++ E+ +++ EE+++EK+++ ++KEEEE++E+++ +++
Sbjct: 400 EFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 32.2 bits (74), Expect = 0.15
Identities = 12/49 (24%), Positives = 32/49 (65%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E I ++ ++ ++ ++ E+++EEEK+E+++K +++E++EE
Sbjct: 397 EEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEE 445
Score = 29.9 bits (68), Expect = 0.75
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EEE E ++ ++ +K EK E++ +EE+KE++++
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
Score = 28.3 bits (64), Expect = 2.7
Identities = 12/62 (19%), Positives = 34/62 (54%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+ ++ E EEE E K+ ++ ++ E+ E+K E++++E++K+ ++ +
Sbjct: 384 LAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEE 443
Query: 187 KD 188
++
Sbjct: 444 EE 445
Score = 26.8 bits (60), Expect = 7.9
Identities = 12/52 (23%), Positives = 30/52 (57%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEE E +K ++ K+ ++ E+++EE+K+E+++K + +++
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEE 446
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 45.1 bits (107), Expect = 6e-06
Identities = 24/43 (55%), Positives = 35/43 (81%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+E +EEEE E+EEK+EEEEK +KEEE ++EE+KEE+++K
Sbjct: 31 VEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKK 73
Score = 44.4 bits (105), Expect = 1e-05
Identities = 24/44 (54%), Positives = 38/44 (86%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E+E E+E +EEE+EE+EEK+EE+E+ +KEE+ +EEE+KEE++
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKK 71
Score = 42.4 bits (100), Expect = 5e-05
Identities = 22/51 (43%), Positives = 41/51 (80%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E E+E +EEEE+E+EE+KEEE++ +++EE EEEE++E+++ +++V +
Sbjct: 30 EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 42.1 bits (99), Expect = 8e-05
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EEEEEE+E ++EE+E+ +KEEE +EEEEKEE+K++ ++ +E
Sbjct: 36 PDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKE 79
Score = 40.1 bits (94), Expect = 3e-04
Identities = 20/42 (47%), Positives = 34/42 (80%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EEEEE+EE +EEE++ +++EE EEEE++E++K+ ++ KE
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 38.2 bits (89), Expect = 0.001
Identities = 23/49 (46%), Positives = 38/49 (77%), Gaps = 2/49 (4%)
Query: 131 ISNTQEEEEEEEENEEEEK--EEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ + +EEEE+EE+ EEEEK ++EEE +EE+E+EE+K++ K+ +E E
Sbjct: 35 VPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE 83
Score = 36.7 bits (85), Expect = 0.004
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+EEEE+ + EEE EEEE++E++K+ ++ KE E E + + I R
Sbjct: 48 KEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTR 96
Score = 31.3 bits (71), Expect = 0.33
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E+E EKE EEEEE++E+K+EEE+K + +++
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEE 66
Score = 29.4 bits (66), Expect = 1.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
++G I +E EEE+EE E E E EE E+ + EE
Sbjct: 490 KLGLSIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 29.0 bits (65), Expect = 1.8
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
+ E+EE EEE+EE E E E EE+ E+ + +E
Sbjct: 494 SIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 28.6 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+E+EE E+E+EE + E E EE E + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 28.2 bits (63), Expect = 2.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+E+EE EE +EE + E E EE E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 27.8 bits (62), Expect = 3.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+E+ E EE++EE E E + EE+ E+ K EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 26.7 bits (59), Expect = 8.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+E+EE E E+EE E E + E++ E+ K E+
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 43.2 bits (102), Expect = 1e-05
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 118 VNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
V + P W++ +S++ +EEEE EE +E E+E+ E + E +E+K+ + + + ++E
Sbjct: 78 VRNLPAMWKIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKE 137
Query: 178 QQ 179
+
Sbjct: 138 KP 139
Score = 38.6 bits (90), Expect = 5e-04
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++EEEE EEE E E+E+ E + + +E++++E +
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTE 135
Score = 34.7 bits (80), Expect = 0.010
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEE--KEEQKEEEEQKEEQQ 179
T+EE +E E E+ + + E KE++K E + E++K + E K+ +
Sbjct: 99 EETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 33.6 bits (77), Expect = 0.028
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E +E +E E+ + E + E ++++++E + K E+++ + +
Sbjct: 97 EEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEP 143
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 44.0 bits (104), Expect = 2e-05
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E+E+EEE + ++ EEEE E+ +EE + E E + S ADK
Sbjct: 371 DEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADK 422
Score = 42.0 bits (99), Expect = 7e-05
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE +E+E+EEEE+ +E +EEE E+ EE+ Q E+ E
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSS 410
Score = 40.9 bits (96), Expect = 2e-04
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ EE +E+ +EEE++ +E EEE+ E+ E+E + E+ E
Sbjct: 364 PIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSE 407
Score = 39.7 bits (93), Expect = 4e-04
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEE+ +E+EEEE E+ EE+ + E+ E + E + +D D
Sbjct: 377 EEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
Score = 38.2 bits (89), Expect = 0.001
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + E +E+++EEEE+ ++ EEEE E+ +EE Q E
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDG 404
Score = 37.4 bits (87), Expect = 0.002
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ + EE +E+E++EEE+ +E +EEE E E++ + +++ S D
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSD 415
Score = 37.0 bits (86), Expect = 0.003
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E S+ EEEE E+ EE + E+ E + E K ++E +
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
Score = 37.0 bits (86), Expect = 0.004
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S +++ + + E+ +E+E EEE++ +E EE++ E+ ++E Q
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQ 399
Score = 36.3 bits (84), Expect = 0.006
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
Q +E EEE E+ +EE + E+ E + + E + +++ S
Sbjct: 379 EQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESAS 426
Score = 35.1 bits (81), Expect = 0.014
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+EEE E+ E E + E+ E + + E + ++E +
Sbjct: 386 EEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDS 430
Score = 32.4 bits (74), Expect = 0.13
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + + + + EE +++E+EE+E+ +E EE+E + EEE + ++
Sbjct: 352 SKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSRE 402
Score = 32.0 bits (73), Expect = 0.16
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
++ EEE ++ E+ E E + +E + +
Sbjct: 382 SDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDS 430
Score = 31.6 bits (72), Expect = 0.21
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E + EH E+ EEE E+ E + + E + +++ + E
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 29.7 bits (67), Expect = 0.89
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E+ EEE ++ E E + + E K +++ + E
Sbjct: 389 EGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 28.2 bits (63), Expect = 2.8
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E +++EE + E+ E + + E + ++E + E
Sbjct: 381 RSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 28.2 bits (63), Expect = 3.0
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
N +E + + + + +E +++E+EE EEQ+ +E ++EE +
Sbjct: 346 NPSTKESKMRDKRRARLDPIDFEEVDEDEDEE-EEQRSDEHEEEEGE 391
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 43.1 bits (102), Expect = 2e-05
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
K Q E +EE ++ EE E E++EEEE EEE+E+++E+EE+KE EEQ ++
Sbjct: 12 EEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKE 71
Query: 179 Q 179
Q
Sbjct: 72 Q 72
Score = 35.8 bits (83), Expect = 0.006
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ E E +EE E EE+ E++++EEE++E EE+ +++EE +K +
Sbjct: 37 KREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFV 83
Score = 34.3 bits (79), Expect = 0.017
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
Q E EEEE E ++ EE+ E E ++EEE E+E +K++EE++ +++ +
Sbjct: 20 QREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQA 68
Score = 33.9 bits (78), Expect = 0.027
Identities = 18/56 (32%), Positives = 38/56 (67%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++ ++ E EEEE+EE ++ EE++E E ++EE+ EEE +K++++ R+ ++
Sbjct: 12 EEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQ 67
Score = 33.5 bits (77), Expect = 0.031
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ +EEEE EEE E++++EEE ++ EE+ +E++E +K + E++
Sbjct: 36 EKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEE 87
Score = 33.1 bits (76), Expect = 0.040
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+EE EEE E ++EE+E +E +E+ ++E+EE E+ K +EE
Sbjct: 45 EEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDK 91
Score = 30.4 bits (69), Expect = 0.34
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EE++ ++ E EEEE +E +K EE+ + E+KEEEE +EE+
Sbjct: 11 LEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEER 52
Score = 30.4 bits (69), Expect = 0.36
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
EEE E+++ EEE KE EE+ +E+EE E+ + EE+ ++ +
Sbjct: 47 ELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSA 94
Score = 28.9 bits (65), Expect = 1.3
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+++EEEE + EE+ +E+E+ E+ + EE+ ++ +E+
Sbjct: 52 REKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESNE 100
Score = 28.1 bits (63), Expect = 2.0
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++ + E++ + ++ E EEE+ EE +K E+K E E+KEE+
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEE 46
Score = 26.6 bits (59), Expect = 8.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+EEEE +E E+ KE+EE ++ + E+E + +E ++
Sbjct: 56 KEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESNEL 101
Score = 26.2 bits (58), Expect = 9.0
Identities = 11/46 (23%), Positives = 30/46 (65%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ +++ + EEK+ +++ E +EE++EE ++ EE++ R +++
Sbjct: 2 KIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEE 47
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 44.1 bits (104), Expect = 2e-05
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EE EEEE EEEE+EEEE++ EE+E E+E+EE++ E + E+++
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
Score = 43.7 bits (103), Expect = 2e-05
Identities = 25/43 (58%), Positives = 35/43 (81%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E EEEE+ EEE+EEEEE+EEE++E EE+E + EEEE++ E
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEAD 479
Score = 43.4 bits (102), Expect = 3e-05
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
P + EEEEEEEE EEEE++E EE+E E EEEEE+ E E++
Sbjct: 426 STSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEE 485
Query: 176 EEQ 178
E
Sbjct: 486 MEG 488
Score = 43.0 bits (101), Expect = 4e-05
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + EEEEEE EEEE+EE+E +EEE E+EEE+EE + + +EE +
Sbjct: 436 SQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 42.2 bits (99), Expect = 7e-05
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
EEEEEEE EEEE+E+E E+EE ++EEEE+E + + ++E + S
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491
Score = 41.8 bits (98), Expect = 1e-04
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S + + +E EE E E+EEEEE+EEE+EE+E +EE+ E+EE++EE +
Sbjct: 418 SSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVE 477
Score = 41.1 bits (96), Expect = 2e-04
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+EEEEEEEE EE+E EEEE ++EE+EEE E + EEE + +
Sbjct: 447 EEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492
Score = 41.1 bits (96), Expect = 2e-04
Identities = 24/44 (54%), Positives = 28/44 (63%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EEEEEEEE E+E +EEE E EEE+EE E +EE E E
Sbjct: 450 EEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGD 493
Score = 40.7 bits (95), Expect = 2e-04
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S P S + +E EEE EE+EEEEE+EEE+E+E E+EE ++EEE++E +
Sbjct: 419 SDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEA 478
Score = 39.9 bits (93), Expect = 4e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+EEEEEEEE +E E+EE E++EEE+E E + ++E E E
Sbjct: 447 EEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDG 494
Score = 38.4 bits (89), Expect = 0.002
Identities = 21/41 (51%), Positives = 34/41 (82%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+E EEE EEEEE+EEE+EEEE++ E++E E+++EE+++
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVE 477
Score = 38.0 bits (88), Expect = 0.002
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E E + E +E+E EEEE E+EE+EEE E + EEE E + + + ++
Sbjct: 440 EEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEP 499
Query: 177 EQQISRRVAD 186
E+ RR ++
Sbjct: 500 EEDAERRNSE 509
Score = 35.7 bits (82), Expect = 0.012
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+E E+EE E+EEE+EEEEE+EEQ+ EEE+ E+++ V
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEA 478
Score = 34.5 bits (79), Expect = 0.027
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEE---EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + E S +E E+EEEE E E EEE E E + + E+ E+ E E
Sbjct: 453 EEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAG 512
Query: 180 ISR 182
ISR
Sbjct: 513 ISR 515
Score = 32.2 bits (73), Expect = 0.14
Identities = 19/73 (26%), Positives = 32/73 (43%)
Query: 110 CTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
VE + E + E + +EE E+EEE EE E + E+E E E + + ++
Sbjct: 439 SEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEE 498
Query: 170 EEEEQKEEQQISR 182
EE+ +
Sbjct: 499 PEEDAERRNSEMA 511
Score = 30.3 bits (68), Expect = 0.62
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 21/78 (26%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEK---------------------EEEKEEEEEKEEQKE 170
+ Q++ EEEE + +E+E + +E +EEE +EE++E
Sbjct: 392 AMKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEE 451
Query: 171 EEEQKEEQQISRRVADKD 188
EEE++EE+Q S +D
Sbjct: 452 EEEEEEEEQESEEEEGED 469
Score = 27.6 bits (61), Expect = 5.2
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
EV + + + E S + EE EE+ E E E ++ + + E +E
Sbjct: 475 EVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQE 534
Query: 177 EQQ 179
E
Sbjct: 535 EPL 537
Score = 27.2 bits (60), Expect = 6.1
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+EEEE E +N EE+ E + + EE E++ ++ E ++S
Sbjct: 471 EEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSE 518
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 41.5 bits (98), Expect = 3e-05
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEK--EEEEEKEEQKEEEEQKEEQQISRRVA 185
G I ++ EE+E E EE+E++EE+EKE K ++EE+E++ EE E+ + + ++R
Sbjct: 9 GRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYAD 68
Query: 186 DKD 188
D+D
Sbjct: 69 DED 71
Score = 28.0 bits (63), Expect = 1.6
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 129 EHISNTQEEEEEEEENEEEEK----------EEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E + E+EE+E EE+EK E E+ EE ++ + + + ++E +E+
Sbjct: 16 EKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDEE 75
Query: 179 QISR-RVAD 186
+ R D
Sbjct: 76 LKEQERWDD 84
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 41.1 bits (97), Expect = 6e-05
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+EEEEEE E EE ++EE+ ++ EKE + K E++ E E+K+
Sbjct: 102 EEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143
Score = 41.1 bits (97), Expect = 6e-05
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+++E+EEE EEE + EE ++EE+ +E EKE K + E++ E + ++
Sbjct: 97 DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQK 144
Score = 40.3 bits (95), Expect = 1e-04
Identities = 16/53 (30%), Positives = 35/53 (66%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++ + + ++E+EEEEE E E +E +EE++ ++ E+E + K E+ ++ E+
Sbjct: 89 KVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENER 141
Score = 38.8 bits (91), Expect = 4e-04
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E EE +E E+ ++ E+E + K E+ + E+K++E KE+
Sbjct: 108 EVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 38.8 bits (91), Expect = 4e-04
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
EEEE E E +EE++ +E E+E + + ++ ++ E +QKE + +
Sbjct: 105 EEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
Score = 36.5 bits (85), Expect = 0.003
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+++E EEEE+EE E +E ++EE+ ++ +KE + K E++
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKR 136
Score = 35.7 bits (83), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ-KEEQQISR 182
++KE+EEE+EEE E EE EE++ +E KE ++ R
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKR 133
Score = 33.8 bits (78), Expect = 0.022
Identities = 12/49 (24%), Positives = 31/49 (63%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ +++E++EEEEE+ E +E +EE++ + E++ + + +R ++
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 42.1 bits (99), Expect = 6e-05
Identities = 20/63 (31%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 115 LVEVNSKPETWQ--MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
L E N K + + +GE T EE E + +EE+ ++EE ++++KE+ +E +E+++++
Sbjct: 371 LKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKD 430
Query: 173 EQK 175
E+K
Sbjct: 431 ERK 433
Score = 40.5 bits (95), Expect = 2e-04
Identities = 12/57 (21%), Positives = 33/57 (57%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
Q+ ++ E ++E EE + + KEE+ ++EE +++++++ ++ +R D+
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/57 (26%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEK--EEEEEKEEQKEEEEQKEEQQISRR 183
+ + + ++ E ++ + +E E + +EEK +EE EK+++++ +E KE++Q R
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 37.9 bits (88), Expect = 0.002
Identities = 12/55 (21%), Positives = 33/55 (60%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E ++ ++ ++ E ++E + +E E + +E+K ++E+ E++Q + DK+
Sbjct: 371 LKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKE 425
Score = 29.0 bits (65), Expect = 1.4
Identities = 13/32 (40%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
Query: 135 QEEEEEEEENEEEEKE-EEEEKEEEKEEEEEK 165
+EE+ ++EENE+++KE +E+KE+ +++E +K
Sbjct: 403 KEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 41.5 bits (98), Expect = 1e-04
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ T+EEEEE+ EE+ +EE +E+++E+++E+ E K + EEQ
Sbjct: 259 RKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQ 308
Score = 38.8 bits (91), Expect = 8e-04
Identities = 16/48 (33%), Positives = 33/48 (68%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
EEE +EE +E+++E+++E+ E K + EEQ++ EE++ ++Q +
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 32.6 bits (75), Expect = 0.091
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 145 EEEEKEEEEEKEEEKEEE--EEKEEQKEEEEQKEEQQISRRVADK 187
EEEE++ + EEE++EE E+KEE+K+EE + + ++S K
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRK 310
Score = 31.8 bits (73), Expect = 0.16
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ EE+EE+ K E+E +EE +E+KEE++++E +
Sbjct: 262 DKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAK 299
Score = 28.8 bits (65), Expect = 1.5
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 10/47 (21%)
Query: 133 NTQEEEEEE--EENEEEEKEEEEEKEEE--------KEEEEEKEEQK 169
+EE +EE E+ EE++KEE E K + EE+E K++ +
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 41.3 bits (96), Expect = 2e-04
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E K E + E + + EE ++ E+++K EE +K EE E++ + +KE EE K+
Sbjct: 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Query: 177 EQQISRRVADK 187
+++ ++ A++
Sbjct: 1704 AEELKKKEAEE 1714
Score = 37.0 bits (85), Expect = 0.004
Identities = 17/53 (32%), Positives = 37/53 (69%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++ EE++++ EE +K EE+EK+ + ++E EE K+ EE K+++ ++ A++
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
Score = 36.3 bits (83), Expect = 0.007
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E K E + E + EE ++ E E + K EE K+ E+++++ +E +K EE++K+
Sbjct: 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Query: 177 EQQISRRVADK 187
+ ++ A++
Sbjct: 1690 AAEALKKEAEE 1700
Score = 35.5 bits (81), Expect = 0.013
Identities = 18/53 (33%), Positives = 37/53 (69%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ EE+E++ E +KE EE K+ E+ +++E EE+K+ EE K+ ++ ++ A++
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
Score = 35.5 bits (81), Expect = 0.015
Identities = 17/59 (28%), Positives = 38/59 (64%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ E + E + + EE+++ E ++ +EE + K EE ++E E++++K EE +K+E++
Sbjct: 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
Score = 34.7 bits (79), Expect = 0.022
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E E E + +EE+++ E+ +++E EE+++ EE K+ EEE + + EE +K
Sbjct: 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
Query: 177 EQQ 179
E+
Sbjct: 1671 EED 1673
Score = 34.7 bits (79), Expect = 0.024
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E+ E + E + + EE+++ E ++ +EE + K E+ ++ E++++K EE +K
Sbjct: 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
Query: 177 EQQ 179
E+
Sbjct: 1684 EED 1686
Score = 34.3 bits (78), Expect = 0.035
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E K E + E + EE ++ E E + K EE +KE E+++++ +E +K+EEE+K+
Sbjct: 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
Query: 177 EQQISRRVADK 187
+ + K
Sbjct: 1759 IAHLKKEEEKK 1769
Score = 33.2 bits (75), Expect = 0.080
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++E EE+++ EE K++EEEK++ ++E+E++ EE +++E I + ++D
Sbjct: 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789
Score = 32.8 bits (74), Expect = 0.095
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
EE ++ E + K EE +K EE++++ E+ ++KE EE+K+ +++ +
Sbjct: 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Score = 32.8 bits (74), Expect = 0.11
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 135 QEEEEEEEENEEEEKEEEEEK---EEEKEEEEEKEEQKEEEEQKEEQQ 179
++E EE ++ EE +K+E EEK EE K+ EEE + + EE +++ E+
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Score = 32.4 bits (73), Expect = 0.14
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E E + + EE ++ E ++++ EE++K EE ++ EE+ + K EE +KE
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
Query: 177 EQQISRR 183
++ ++
Sbjct: 1739 AEEDKKK 1745
Score = 31.6 bits (71), Expect = 0.26
Identities = 14/49 (28%), Positives = 33/49 (67%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++ EE ++ E+E+K E K+E +E ++ +E +K+E E+K++ + ++
Sbjct: 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 31.6 bits (71), Expect = 0.26
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E E ++ E + EE ++ E + + EE ++ EEEK++ E+ ++++ EE++K
Sbjct: 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
Query: 176 EEQ 178
E+
Sbjct: 1649 AEE 1651
Score = 30.5 bits (68), Expect = 0.65
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 9/62 (14%)
Query: 135 QEEEEEEEENEEEEKEEEEE-------KEEEKEEEEEKEEQKE--EEEQKEEQQISRRVA 185
+E EE++++ EE +K+EEE+ KEEEK+ EE ++E++ EEE EE + R
Sbjct: 1737 KEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
Query: 186 DK 187
DK
Sbjct: 1797 DK 1798
Score = 30.1 bits (67), Expect = 0.83
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ EE + EE++ + EE K+ E+ + + +E +K EEE+K+ +Q+ ++ A++
Sbjct: 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
Score = 30.1 bits (67), Expect = 0.89
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E E EE+ E EK++EE K++ +++ EE+K+ +E K++ + ++ AD+
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
Score = 29.7 bits (66), Expect = 1.2
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEE--ENEEEEKEEEEEKEEEKEEEEE---KEEQKEE 171
E E + + +E ++ +E + EE +K +E +K EEK++ +E EE K+
Sbjct: 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
Query: 172 EEQKEEQQISRRVADKD 188
EE+K+ ++ + DK+
Sbjct: 1561 EEKKKAEEAKKAEEDKN 1577
Score = 29.0 bits (64), Expect = 1.6
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
EE ++ EE+K++ EE ++++EE+++ K+EEE+K E+ + A
Sbjct: 1733 EEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
Score = 29.0 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE--QKEEEEQKEE 177
+K E + +E+ E E+ +EE K++ + +++ EE+++ +E +K EE++K+
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
Query: 178 QQISRRVADK 187
++ + A K
Sbjct: 1408 DELKKAAAAK 1417
Score = 29.0 bits (64), Expect = 1.9
Identities = 11/49 (22%), Positives = 33/49 (67%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+++ EE+++ +E K+ K++ E +++ EE+K+ +E K++ + +++
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 29.0 bits (64), Expect = 2.0
Identities = 11/53 (20%), Positives = 33/53 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++ +E +++ EE++K+ +E K+ +++ E +K+ EE+K+ + ++ +
Sbjct: 1391 KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA 1443
Score = 29.0 bits (64), Expect = 2.1
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK---EEQKEEEE 173
E K E + E EE ++ +E +++ +E ++ E +K+ EE K +E K+ E
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507
Query: 174 QKEEQQISRRVADK 187
K++ +++ +
Sbjct: 1508 AKKKADEAKKAEEA 1521
Score = 29.0 bits (64), Expect = 2.2
Identities = 15/69 (21%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE--QKEEEEQKEEQ 178
K E + + + +E+++ +E + EEK++ +E +++ EE ++ +E +K EE +K+
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
Query: 179 QISRRVADK 187
++ +
Sbjct: 1333 AAKKKAEEA 1341
Score = 29.0 bits (64), Expect = 2.2
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E + + EE ++ E + E E ++ E EE+ E E+K+EE +K+ +
Sbjct: 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
Query: 183 RVADK 187
+ +K
Sbjct: 1386 KAEEK 1390
Score = 28.6 bits (63), Expect = 2.2
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E K + + E E ++ EE + EEK++ EE ++ +E++ + EE ++ E
Sbjct: 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
Query: 177 EQQI 180
E +I
Sbjct: 1591 EARI 1594
Score = 28.6 bits (63), Expect = 2.3
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
K E + + + E +E EEK E EK++E+ +++ +K+ EE+K+
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Query: 177 EQQISRR 183
+ ++
Sbjct: 1393 ADEAKKK 1399
Score = 28.6 bits (63), Expect = 2.5
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEE---KEEEEEKEEQKEEEEQKEEQQ 179
E + E + +EE + + E ++E EE+++K EE EEE++K ++EE+K+ ++
Sbjct: 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
Query: 180 ISR 182
I +
Sbjct: 1773 IRK 1775
Score = 28.6 bits (63), Expect = 2.6
Identities = 16/51 (31%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 139 EEEEENEEEEKEEEEEKEEE--KEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE ++ +E +K EE++K +E K EE +K E+K++ E+ ++ + + +A +
Sbjct: 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
Score = 28.6 bits (63), Expect = 2.7
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK---EEQKEEEE 173
E K E + + EE ++ +E +++ +E +++ +E K+ E K +E K+ EE
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
Query: 174 QKEEQQISR 182
K+ + +
Sbjct: 1521 AKKADEAKK 1529
Score = 28.2 bits (62), Expect = 3.0
Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 117 EVNSKPETWQMGEHISNTQEEE----EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
K E + + EE+ +E ++ +K+ +E K++ +E+++ E +K+ E
Sbjct: 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
Query: 173 EQKEEQQISRRVADK 187
E K+ + ++ +
Sbjct: 1442 EAKKADEAKKKAEEA 1456
Score = 28.2 bits (62), Expect = 3.1
Identities = 15/48 (31%), Positives = 35/48 (72%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+E ++ EE++K +E +K EE ++ EEK++ +E ++ +E++ ++ R A+
Sbjct: 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE 1584
Score = 28.2 bits (62), Expect = 3.2
Identities = 11/48 (22%), Positives = 31/48 (64%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++ ++ +E K++ EEK++ E +++ EE K+ +E K++ + +++
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 28.2 bits (62), Expect = 3.3
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+++ EE ++ +E K+ E K++ E ++ +E +K +E +K E+
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533
Score = 27.8 bits (61), Expect = 4.0
Identities = 12/50 (24%), Positives = 31/50 (62%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E +++ EE +K +E +K+ E+ +++ +K+ EE K+ + ++ A+
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
Score = 27.8 bits (61), Expect = 4.1
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E K E + E ++ ++ E + EE +++ E+ ++ EEE EE ++ EE +
Sbjct: 1202 AEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEAR 1261
Query: 176 EEQQISRRVADK 187
R+ A K
Sbjct: 1262 MAHFARRQAAIK 1273
Score = 27.8 bits (61), Expect = 4.4
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEE----KEEEKEEEEEKEEQKEE 171
+ E + E T+ + EE EE K++ E+ +E K E+ K E+ +
Sbjct: 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARK 1147
Query: 172 EEQKEEQQISRRVAD 186
E + +I+R+ D
Sbjct: 1148 AEDAKRVEIARKAED 1162
Score = 27.8 bits (61), Expect = 4.4
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E+ E + E + ++ EE++N K EE +K EE EE + +EE++ K
Sbjct: 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
Query: 177 EQ 178
E+
Sbjct: 1610 EE 1611
Score = 27.8 bits (61), Expect = 5.1
Identities = 12/53 (22%), Positives = 34/53 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+++ +E ++ EE+K+ +E K++ +E ++ E +K+ EE K+ ++ ++ +
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
Score = 27.4 bits (60), Expect = 5.4
Identities = 15/71 (21%), Positives = 34/71 (47%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E K E + + + EE ++ + + E E E EE+ + +K++EE K+
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Query: 177 EQQISRRVADK 187
+ +++ A++
Sbjct: 1379 KADAAKKKAEE 1389
Score = 27.4 bits (60), Expect = 5.6
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E K E + + EE +++ + +++ EE ++ E + E E + E +++
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Query: 177 EQ 178
+
Sbjct: 1366 AE 1367
Score = 27.4 bits (60), Expect = 6.0
Identities = 10/56 (17%), Positives = 35/56 (62%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+++ + ++ EE+K+ +E K++ +E++++ +E K+ K++ +++ A++
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
Score = 27.4 bits (60), Expect = 6.3
Identities = 12/53 (22%), Positives = 36/53 (67%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++++EE ++ + K++ EEK++ E +++ EE K++ ++ ++ +++ AD+
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE 1422
Score = 27.0 bits (59), Expect = 7.7
Identities = 12/54 (22%), Positives = 34/54 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E E +E E E++ E +++++E +++ + K++ E+K++ +++ A++D
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
Score = 27.0 bits (59), Expect = 9.1
Identities = 12/53 (22%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 137 EEEEEEENEEEEKEEEEEKEEE--KEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE +++ +E ++ E ++K +E K EE +K ++ ++ E+ ++ +++ +K
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 40.6 bits (95), Expect = 2e-04
Identities = 11/59 (18%), Positives = 30/59 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++ E+ ++ E+ ++ +E++K+ EE K +Q E + K E + ++ ++
Sbjct: 89 ARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEE 147
Score = 39.0 bits (91), Expect = 6e-04
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E+ ++E E+ E+ K+ E+ ++ +E+QK+ EE K +Q + +
Sbjct: 85 AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAE 137
Score = 37.5 bits (87), Expect = 0.002
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEE-EKEEEEEKEEQKEEE 172
VLV+ + + Q+++ ++ +E +K+ E++ EE EK+ E+ QKE E
Sbjct: 41 VLVDPGAVAQQAN-----RIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELE 95
Query: 173 EQKEEQQISRR 183
++ ++ +++
Sbjct: 96 QRAAAEKAAKQ 106
Score = 36.7 bits (85), Expect = 0.004
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
Q++ EE + + E + + E E EK+ +EE ++Q EEE + + +++ A +
Sbjct: 118 QKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAE 170
Score = 36.0 bits (83), Expect = 0.008
Identities = 9/51 (17%), Positives = 29/51 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++ E++ EE E++ E+ ++E ++ ++ K+ E+ ++ + ++ A
Sbjct: 71 KKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQA 121
Score = 35.2 bits (81), Expect = 0.013
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
++E +++ E + EE E++ E+ +++E E+ E+ ++ EQ
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQA 110
Score = 34.0 bits (78), Expect = 0.029
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ E++ EE ++ E+ +KE E+ EK ++ E+ K+ ++ ++
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAE 122
Score = 32.1 bits (73), Expect = 0.12
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE------------QKEEEEQKEEQQ 179
++ E+ ++ EE++K+ EE K ++ E + K E ++ EEE K +
Sbjct: 104 AKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAA 161
Score = 31.7 bits (72), Expect = 0.19
Identities = 10/46 (21%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++ +KE+E +K+ E++ EE ++++ E+ ++ +++ +R A +
Sbjct: 58 QKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQ--KELEQRAAAE 101
Score = 31.3 bits (71), Expect = 0.22
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 135 QEEEEEEEENEEEEKEEEEEK---EEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEE + + E +K+ E K E E + + E + + + EE K + + ++ A +
Sbjct: 152 AEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAE 208
Score = 31.0 bits (70), Expect = 0.38
Identities = 11/50 (22%), Positives = 30/50 (60%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ E+ + EEK+++ E+ + K+ E K + + E E+K +++ ++ ++
Sbjct: 106 QAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEE 155
Score = 30.2 bits (68), Expect = 0.64
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEE------EEKEEQKEEEEQKEEQQISRRVADKD 188
++ EE + + E K + E + E+K +E EE+ + K E K++ +++ A+ +
Sbjct: 119 KQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAE 178
Score = 28.6 bits (64), Expect = 2.0
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ E E + + E + K + EE + + E + K + + + E + +
Sbjct: 174 KAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAE 226
Score = 28.6 bits (64), Expect = 2.0
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++ +EE ++ EEE + + E +K+ E K++ + E + K E
Sbjct: 142 KKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAE 184
Score = 27.9 bits (62), Expect = 3.7
Identities = 6/55 (10%), Positives = 27/55 (49%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ ++ ++++K ++++E +++ E++ E+ E++ E+ +
Sbjct: 44 DPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRA 98
Score = 27.5 bits (61), Expect = 5.0
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ----KEEEEQKEEQQISRRVA 185
E E E++ EE +K+ EEE + + E +K+ K E E K + + +
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 40.9 bits (96), Expect = 2e-04
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE--EEEQKEEQQ 179
ET Q ++I + E E+ N E + EEEE++EEE+EE+E++ KE ++E+ EE
Sbjct: 365 KETEQ--DYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDD 422
Query: 180 ISRRVADKD 188
+ + D D
Sbjct: 423 VESKYEDSD 431
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+EEE+EEEE EE+E E ++ + EE EE + + + E+ ++
Sbjct: 391 EEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNSSLA 437
Score = 32.4 bits (74), Expect = 0.12
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
+ E ++EEEEEEE+E+E +E +EE EE++
Sbjct: 379 LEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDD 422
Score = 31.3 bits (71), Expect = 0.27
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
W+ T+ +E E++ + E E + ++EE+E+++EEEE+ E++ S+
Sbjct: 353 WETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEH 412
Query: 185 ADKD 188
+D +
Sbjct: 413 SDDE 416
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 40.7 bits (96), Expect = 2e-04
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 66 IILCIGVLGNIMVPCVILKSKDMR-NSTNIFLMNLSIADLMVLL 108
I+ IG + NI +IL K MR +S NI ++ ++I D++ +L
Sbjct: 5 ILSIIGFIINI-FHLIILTRKSMRTSSINIIMIGIAICDIITML 47
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 40.1 bits (94), Expect = 2e-04
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EEEE+ +E+ E++ KE E E+ +E++E+ EEEE++EE++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 40.1 bits (94), Expect = 2e-04
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E++ +E E+ EE+E+ EEE+EEEEE++E ++++ ++
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 39.0 bits (91), Expect = 6e-04
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E++ +E E E+ +EE+EK+EE+EEEEE+E++ +++ ++
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 37.4 bits (87), Expect = 0.002
Identities = 19/44 (43%), Positives = 35/44 (79%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
T+EEE+ +E+ EK+ +E + E+ +EE+EK+E++EEEE++E+
Sbjct: 143 TEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEED 186
Score = 34.7 bits (80), Expect = 0.016
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
++ +E+ E++ KE E E +E++E++E+EE++EEEE
Sbjct: 145 EEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 28.6 bits (64), Expect = 1.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKE 160
E + E++EEEEE EEEE E+ ++ +++ +
Sbjct: 163 LEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 40.1 bits (94), Expect = 2e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
N +E+ +E EN+EE+K +EE+ E E+ E+EE E EE + + +++
Sbjct: 11 ENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDEN 63
Score = 39.4 bits (92), Expect = 4e-04
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
M E E +EE++ EE+ + EE EKEE E+ EE E K EE + E
Sbjct: 13 MEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Score = 39.0 bits (91), Expect = 5e-04
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + E +EE++ +EE+ E EE ++EE E+ E+ + + EE K+E
Sbjct: 14 EEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Score = 36.3 bits (84), Expect = 0.005
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E+ E EE +EE E+ EE E K EE + E K +EE K+ +
Sbjct: 28 KGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLEN 75
Score = 35.5 bits (82), Expect = 0.009
Identities = 13/47 (27%), Positives = 31/47 (65%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+E E +EE++ +E++ E E+ E++E E+ EE E + ++ + + ++
Sbjct: 19 KENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNK 65
Score = 34.3 bits (79), Expect = 0.017
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+EE++ +EE+ E E+ E+EE E+ EE E + ++ ++E +
Sbjct: 23 NKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNK 65
Score = 33.6 bits (77), Expect = 0.031
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E EE E+ E E EE + + +E ++E + KEE ++ E +
Sbjct: 30 KEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENE 76
Score = 33.6 bits (77), Expect = 0.036
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ ++ + E EE+ +E E KEE+K +EE+ E ++ E+E+ E
Sbjct: 4 ECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIED 47
Score = 32.4 bits (74), Expect = 0.082
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E+E ++ E +E+ ++ E KEE++ KEE E EE ++E+ I
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEII 45
Score = 31.3 bits (71), Expect = 0.19
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ N +E++ +EE+ E EE E+EE E+ +E E K E+ ++E K +++
Sbjct: 19 KENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEE 69
Score = 28.2 bits (63), Expect = 2.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EKE ++ K E EE+ KE + +EE++ +E+ + +K+
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKE 42
Score = 27.4 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 113 TVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E +K E E + + E+EE E+ EE E + E+ +++ + ++E +K E
Sbjct: 16 DCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLEN 75
Query: 173 EQKEEQ 178
E + +
Sbjct: 76 ELEALK 81
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 40.4 bits (95), Expect = 3e-04
Identities = 18/49 (36%), Positives = 37/49 (75%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E + ++ EEEEE+ + EEE+E++E+ ++E+++EE++EE+E+K+
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKK 380
Score = 40.4 bits (95), Expect = 3e-04
Identities = 17/55 (30%), Positives = 39/55 (70%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + G + ++++++ EE EE+ +EE++EE E+ +++++++EEEE+KE+
Sbjct: 324 EEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 40.0 bits (94), Expect = 4e-04
Identities = 15/44 (34%), Positives = 35/44 (79%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
++E+EE+++++ +EEEE+ + EEE+E++E ++E+ +EE++
Sbjct: 330 VDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEE 373
Score = 38.4 bits (90), Expect = 0.001
Identities = 16/53 (30%), Positives = 38/53 (71%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++E+EE+++++ E+EEE+ ++EE+EE E+ +E++++EE++ + K
Sbjct: 331 DDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKS 383
Score = 37.3 bits (87), Expect = 0.003
Identities = 14/43 (32%), Positives = 33/43 (76%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EE+ + + EE+E++E+ + E+++EEEEE++E+K+++ + +
Sbjct: 346 EEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388
Score = 36.9 bits (86), Expect = 0.005
Identities = 18/44 (40%), Positives = 36/44 (81%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+EEEE+ + ++EEE EE+E+ ++E +EEEE+EE+++++++ E
Sbjct: 343 EEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAES 386
Score = 35.7 bits (83), Expect = 0.009
Identities = 15/41 (36%), Positives = 32/41 (78%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ +EEE+ E+E+ ++E+++EEE+EE+E+K+++ E + E
Sbjct: 350 DLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 35.7 bits (83), Expect = 0.010
Identities = 16/52 (30%), Positives = 38/52 (73%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+++ EEEE + + +EEE++E+E ++E+ EE++EEE++K++++ + +
Sbjct: 339 DDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 35.7 bits (83), Expect = 0.011
Identities = 18/55 (32%), Positives = 40/55 (72%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E + EEEEE+ + +E+E+EE+++ + E++EE+EE+++E+++K+ + +R
Sbjct: 334 DEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388
Score = 35.4 bits (82), Expect = 0.014
Identities = 15/47 (31%), Positives = 34/47 (72%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+E+ + +E E+EE E+ +++++E+EEEEEKE++K++ + ++
Sbjct: 345 EEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 34.2 bits (79), Expect = 0.033
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ EE+EEE E+ +E+EE +++ EEEE++ +EE+ EE + S
Sbjct: 316 LGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDS 363
Score = 32.7 bits (75), Expect = 0.11
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E + +EEE+E +E+ +E++E+EEE+E+E++K++ E +
Sbjct: 344 EEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 32.7 bits (75), Expect = 0.11
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ EE+ EEEE ++E EE+ +++ E+EE+ + +EE + D+D
Sbjct: 316 LGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367
Score = 32.3 bits (74), Expect = 0.15
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEE +EE E+ ++ E E + + EEE+ +EE+ D D
Sbjct: 259 TEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLD 303
Score = 31.1 bits (71), Expect = 0.36
Identities = 15/53 (28%), Positives = 33/53 (62%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E E ++++N + EE+E+EEE ++E EE +++ ++EE+ + ++D
Sbjct: 305 EFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEED 357
Score = 31.1 bits (71), Expect = 0.37
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E + + EEE+EE+E+ ++E +EEEE+EE+++++++ E E
Sbjct: 346 EEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 30.0 bits (68), Expect = 0.91
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEK---EEQKEEEEQKEE 177
EEE++E EE+ KE ++ ++E E +++ Q EE+E++EE
Sbjct: 283 RGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEE 327
Score = 29.6 bits (67), Expect = 1.0
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 134 TQEEEEEEEENEEEEKEEEEEK--EEEKEEEEEKEEQKEEEEQKEE 177
T+EE +EE ++ E E + E+E++EE+E+ KE + ++
Sbjct: 259 TEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDD 304
Score = 29.2 bits (66), Expect = 1.4
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+EEEE+ + ++ ++E E +++ + E+ EEEE+
Sbjct: 288 DDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGV 330
Score = 29.2 bits (66), Expect = 1.5
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EEE++EEE + +E ++ + E E ++++ + EE+++EE+
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEE 327
Score = 28.0 bits (63), Expect = 3.4
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + + + E+EE+EE+ +E++E++++ E++EE+ +
Sbjct: 305 EFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSD 353
Score = 27.7 bits (62), Expect = 4.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 149 KEEEEEKEEEKEEEEEKEEQK-----EEEEQKEEQQISRRVAD 186
K EEE +EE E ++ E ++ EEE EE++ S+ AD
Sbjct: 258 KTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESAD 300
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 40.2 bits (94), Expect = 3e-04
Identities = 15/54 (27%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ +++ E N+EE EEE ++++ E ++ ++++E++Q+EE+Q+ R + +D
Sbjct: 68 ELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQV-RELKARD 120
Score = 36.3 bits (84), Expect = 0.005
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 124 TWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E E +EE EEE ++++ E ++ +++++++Q+EE++ +E + R
Sbjct: 63 GSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKARDRE 122
Query: 184 V 184
V
Sbjct: 123 V 123
Score = 33.2 bits (76), Expect = 0.057
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
S + ++ S +E + + E +EE EE+ E+++ E K+ ++++
Sbjct: 44 GSGSSEQKAKLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQ 103
Query: 177 EQQ 179
EQQ
Sbjct: 104 EQQ 106
Score = 32.8 bits (75), Expect = 0.079
Identities = 12/54 (22%), Positives = 31/54 (57%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+E +++ E EE +EE ++++ E +Q +++Q+++QQ ++V +
Sbjct: 62 AGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRE 115
Score = 29.8 bits (67), Expect = 0.67
Identities = 11/67 (16%), Positives = 30/67 (44%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+S+ G + + + +E +++ E +EE EE+ E+++ + +
Sbjct: 37 SSEASNAGSGSSEQKAKLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGK 96
Query: 179 QISRRVA 185
Q+S++
Sbjct: 97 QLSQKQQ 103
Score = 27.1 bits (60), Expect = 5.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E +++ E EE EEE +++Q E +Q ++Q ++ ++
Sbjct: 64 SASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEE 110
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 40.2 bits (94), Expect = 3e-04
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
Q E EE E E+ E+ EE+ + E E E + E+E ++ +
Sbjct: 396 EALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQP 442
Score = 39.8 bits (93), Expect = 4e-04
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E ++ E IS +EEE + E EE + E+ E+ EE E E+E + E++
Sbjct: 381 EDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDE 436
Score = 37.1 bits (86), Expect = 0.003
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+Q EEEE + E EE+ E E+ E +E+ +E E++ E++
Sbjct: 390 SQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDED 435
Score = 37.1 bits (86), Expect = 0.004
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E E E+ EE E E+E E E++ EE + +EE+
Sbjct: 403 EERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEE 446
Score = 36.7 bits (85), Expect = 0.004
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ E + EE E E+ E E++ + E+E ++E + EE Q EE++ +
Sbjct: 389 ISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Query: 182 R 182
R
Sbjct: 449 R 449
Score = 36.3 bits (84), Expect = 0.006
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 113 TVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+ E+ S+ E + + + + E E+ E EE+ + E E E E+E E ++ +
Sbjct: 383 AKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQP 442
Query: 173 EQKEE 177
E++EE
Sbjct: 443 EEEEE 447
Score = 35.1 bits (81), Expect = 0.013
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
++ + EEEE + E +E E ++ E+ EE+ + + + E +
Sbjct: 385 VAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433
Score = 34.0 bits (78), Expect = 0.039
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
QE E+ + ++EEEE + E EE E E+ + EE
Sbjct: 378 QEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARL 420
Score = 33.6 bits (77), Expect = 0.048
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
I ++ E ++E E+ + E + E+EE + E E+ + E+ E+ EE
Sbjct: 370 IKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEE 416
Score = 33.2 bits (76), Expect = 0.059
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E + EE E ++E EE E E+ E E++ + E E +
Sbjct: 386 AELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFE 432
Score = 33.2 bits (76), Expect = 0.073
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E+ + E + E+EE ++E E+ E E+ E+ EE+ + E
Sbjct: 380 AEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRE 422
Score = 32.8 bits (75), Expect = 0.081
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + E + EEE + E E+ E E+ E EE E +
Sbjct: 382 DAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPE 428
Score = 27.8 bits (62), Expect = 4.2
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
E + E Q + + E +E E E+E E+ + +EEEE +
Sbjct: 401 EAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 39.1 bits (91), Expect = 3e-04
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
P T E + EE EE+EE E+ ++ +E++EE EE EE+ + + S
Sbjct: 15 PPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSS 74
Query: 182 RR 183
+
Sbjct: 75 QE 76
Score = 36.0 bits (83), Expect = 0.004
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++EEE+ + + +E EE++EE ++ E+ +E+ EE E+ EE+ + A
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSS 68
Score = 33.4 bits (76), Expect = 0.030
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 123 ETW-QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E W E + +EE E+ E++ +EE EE EE EEE + + +E I
Sbjct: 22 EDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETISIP 81
Query: 182 RRVA 185
Sbjct: 82 PTPP 85
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 40.3 bits (94), Expect = 3e-04
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK--EEQKEEEEQKEEQQISRRVA 185
N EE E++ E K E E+ E+ +E EEEK EE ++ K+ +++ +
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
Query: 186 DKD 188
D
Sbjct: 350 GLD 352
Score = 39.6 bits (92), Expect = 5e-04
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEK--EEEEEKEEQKEEEEQKEEQQ 179
+IS++ + EE E++ E K E + E+ EE EE+K EEE ++
Sbjct: 286 YISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKK 337
Score = 34.6 bits (79), Expect = 0.025
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
PE E + EE EEE+NEEE ++ K+ +K + ++ K++ + ++
Sbjct: 305 SPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDD 364
Query: 181 S 181
S
Sbjct: 365 S 365
Score = 34.2 bits (78), Expect = 0.028
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ E E++E+ E+ EEE+ EEE ++ ++ K+ + +K + D
Sbjct: 309 PAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDD 361
Score = 33.8 bits (77), Expect = 0.046
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E + E ++E+ EE EE++ E+E K+ +K ++ + ++ + + +D
Sbjct: 306 PEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSG 359
Score = 33.0 bits (75), Expect = 0.068
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
I E E++E+ E EE++ EEE K+ ++ K+ + ++ ++ S +D
Sbjct: 306 PEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDS 365
Score = 29.2 bits (65), Expect = 1.4
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 126 QMGEHISNTQEEEEEEEE---NEEEEKEEEEEKEEEKEEEEEK---EEQKEEEEQKEEQ 178
E+ S+ ++E EE+ + + EE+E++ E EQ E+ E+ EE+
Sbjct: 268 DADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEE 326
Score = 28.0 bits (62), Expect = 3.2
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+++E+ EE EE+ +EE ++ K+ ++ K ++ ++ + +D D
Sbjct: 315 EQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDID 368
Score = 26.8 bits (59), Expect = 7.4
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E EE+ + + +E E + E + E E+ ++ ++
Sbjct: 279 DEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEE 322
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 39.6 bits (93), Expect = 4e-04
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E+EEE++E +K +E+ EE EE+EE+ ++EE E ++E+
Sbjct: 131 DSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 39.3 bits (92), Expect = 6e-04
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ E+EEE +E K+ +E+ +EE EE+E+E +EEE + E+++ S
Sbjct: 130 SDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKAS 175
Score = 38.9 bits (91), Expect = 7e-04
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
GE I ++E E ++E+EE+++E K+ +++ +EE E+ EEE +EE+ + +
Sbjct: 116 GEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEK 171
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
W E + + E+EE ++E ++ +E +E+ EE++EE EEEE + E+
Sbjct: 116 GEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEK 171
Score = 38.1 bits (89), Expect = 0.001
Identities = 18/54 (33%), Positives = 37/54 (68%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E S+ E+EEE++E ++ KE+ +E+ E++EEE EE++ E E+++ +++
Sbjct: 125 KEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELA 178
Score = 36.9 bits (86), Expect = 0.004
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ +EEE E EE+E+ + E E E +E E + + EEE+ + ++ ++
Sbjct: 94 SDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEE 152
Score = 36.6 bits (85), Expect = 0.004
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
S+ + E + E+ EE+++ ++ KE+ EE E++E++ EE++ E + +
Sbjct: 123 SDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 36.2 bits (84), Expect = 0.006
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E EE+E+ ++E E + E +E + + E EE+K+E +K ++ ++++D
Sbjct: 105 EVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEED 157
Score = 33.5 bits (77), Expect = 0.044
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + ++++EEEE E EE E+ +++ E + E +KE + + E +EE
Sbjct: 88 AEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEE 137
Score = 32.7 bits (75), Expect = 0.083
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEK---------EEEEEKEEQKEEEEQKEEQQ 179
+ E ++E E + E+EEEK+E E EE EE+ EEE+ E ++
Sbjct: 114 DEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEK 171
Score = 31.2 bits (71), Expect = 0.25
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++ +EEE + +E E+ E + ++++EEE E EE +E+ E + I
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEE--DEDSDDEGEWID 120
Score = 31.2 bits (71), Expect = 0.26
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E E+ E+++++ EEEE + EE E+ +++ E + E KE +
Sbjct: 86 KEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIE 128
Score = 31.2 bits (71), Expect = 0.31
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+++E E+ +++ +EEEE E E++E+ + E + + E +E + S
Sbjct: 84 KKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESS 130
Score = 30.8 bits (70), Expect = 0.34
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E +++++ EEE + EE+E +++ E + E KE E E +
Sbjct: 92 LESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDE 135
Score = 30.4 bits (69), Expect = 0.48
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EEE +++E E+ + ++++ EEE+ E EE E+ +E E + +
Sbjct: 80 EEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVE 122
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 40.0 bits (94), Expect = 4e-04
Identities = 12/49 (24%), Positives = 32/49 (65%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ EE+++++EE EE+EE + +++E++ ++ +++ E+ + RR
Sbjct: 120 YRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERR 168
Score = 39.2 bits (92), Expect = 7e-04
Identities = 12/49 (24%), Positives = 32/49 (65%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++ EE+++++EE ++E+EE + E +E+++ ++ ++ +E RR
Sbjct: 121 RDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRR 169
Score = 37.3 bits (87), Expect = 0.003
Identities = 10/50 (20%), Positives = 30/50 (60%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
++EE +EE+EE K E++E +++ +++++ ++ E++ ++
Sbjct: 128 DDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEK 177
Score = 35.3 bits (82), Expect = 0.014
Identities = 11/48 (22%), Positives = 34/48 (70%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E+++++EE++EE++E + +++E +++++ ++ E+ E++ RR
Sbjct: 125 EDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRR 172
Score = 33.4 bits (77), Expect = 0.061
Identities = 9/48 (18%), Positives = 27/48 (56%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++ + E ++++ EE +E++EE + E+ E+ ++++ + R
Sbjct: 117 DDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERS 164
Score = 33.0 bits (76), Expect = 0.070
Identities = 10/48 (20%), Positives = 29/48 (60%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EE+EE ++E++E +++++ +++ E E++ + EE++
Sbjct: 131 EESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKR 178
Score = 33.0 bits (76), Expect = 0.079
Identities = 10/53 (18%), Positives = 28/53 (52%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEE ++E ++ + E++++ +EE ++E+++ + + +E D
Sbjct: 106 IEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDI 158
Score = 31.1 bits (71), Expect = 0.37
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EEE ++E ++ + EE +++ EE +E++E+ + E E+
Sbjct: 102 DDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDED 148
Score = 30.0 bits (68), Expect = 0.73
Identities = 11/49 (22%), Positives = 30/49 (61%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ ++ + EE+ +++EE +EE EE + E+ +++++ ++ I+ R
Sbjct: 113 EPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATR 161
Score = 29.6 bits (67), Expect = 1.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ EEE +E ++ EE ++++E+ ++++EE K E D D
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDD 155
Score = 29.2 bits (66), Expect = 1.4
Identities = 11/54 (20%), Positives = 27/54 (50%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ EEE ++ + + +E++ ++EE EE +E + ++++ D D
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDD 157
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 39.4 bits (92), Expect = 5e-04
Identities = 17/48 (35%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 62 VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109
V+ S I G++GNI+V V+ K+K ++ +I+L+NL+++DL+ ++
Sbjct: 45 VVYSTIFFFGLVGNIIVIYVLTKTK-IKTPMDIYLLNLAVSDLLFVMT 91
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 39.7 bits (92), Expect = 6e-04
Identities = 15/52 (28%), Positives = 38/52 (73%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+++++ ++ EE E+ ++E E++ EE+E E+EKE+++E E ++E ++ ++
Sbjct: 572 LASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 38.1 bits (88), Expect = 0.002
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEE-EKEEEKEEEEEKEEQKEEE 172
++ +EE E+ + E E+K EE E+E+EKE+E E+E ++E E
Sbjct: 574 SSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 35.0 bits (80), Expect = 0.016
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E E++ EE E+E+E+EKE E+E E E E + E ++S
Sbjct: 591 EAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMS 634
Score = 32.7 bits (74), Expect = 0.10
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
EE ++ + E E++ EE E+E++KE+E ++E ++ + R A
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAA 622
Score = 30.0 bits (67), Expect = 0.75
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
Q+ EE E +E+EKE E E+E E E + E E Q
Sbjct: 594 QKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSEPQ 637
Score = 28.9 bits (64), Expect = 1.9
Identities = 14/41 (34%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE E+ ++E E++ EE+E +E+E++KE ++ R A++
Sbjct: 582 EEAVEKAKREAEQKAREERE--REKEKEKEREREREREAER 620
Score = 28.1 bits (62), Expect = 3.7
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEE-EKEEEKEEEEEK 165
E + + E E++ E E ++E+E E+E E+E E E+
Sbjct: 583 EAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 27.3 bits (60), Expect = 6.2
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 149 KEEEEEKEEEKEEEEEK-EEQKEEEEQKEEQQISRR 183
K+ EE E+ K E E+K E++E E++KE+++ R
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKERERER 614
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 39.1 bits (92), Expect = 6e-04
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
E + + + EEEE+EEEEE+EEE EEE
Sbjct: 285 DEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 37.9 bits (89), Expect = 0.002
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+++ +EE +E + + +EEE+EEEEE+EE+ EEE
Sbjct: 278 LADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 35.2 bits (82), Expect = 0.013
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+++ +EE KE + + EEE+EE++EEEE++
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 34.1 bits (79), Expect = 0.026
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+ +EE + + + EEE+EEEEE+EE++ EE+
Sbjct: 282 DALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 33.3 bits (77), Expect = 0.054
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+++ + E +E + + EEEEE+EE++EEEE EE+
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 39.5 bits (92), Expect = 7e-04
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ ++ E++ E E E K+++EEK +EKE ++ K QKE + + + QQ S
Sbjct: 4 TESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQAS 53
Score = 31.8 bits (72), Expect = 0.19
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E + + EEE E +++++E+ +EKE +K + +KE + + + Q+
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQ 51
Score = 31.8 bits (72), Expect = 0.22
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S T+ E E++ EEE + +++++E+ KE+E +K + ++E + + Q
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQA 49
Score = 28.7 bits (64), Expect = 2.3
Identities = 12/51 (23%), Positives = 30/51 (58%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EEE E + ++EEK +E+E ++ K ++E + + + ++ + + ++ K
Sbjct: 15 EEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 38.3 bits (89), Expect = 8e-04
Identities = 15/70 (21%), Positives = 36/70 (51%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
V+ + M + + +E+EEE+ +E + +E+E++ E EE ++E++ E ++
Sbjct: 16 VQPKLEEAKANMQKTFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPER 75
Query: 176 EEQQISRRVA 185
E+ +
Sbjct: 76 EDIAEQQEKE 85
Score = 34.0 bits (78), Expect = 0.020
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E EH+ + +EE++ E E E+EKE E + E+ E++EKEE +EEE++EE
Sbjct: 40 EEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEA 97
Score = 33.3 bits (76), Expect = 0.037
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E+E+E E E E+ E++EKEE +EEE++EE ++ ++Q+ ++
Sbjct: 63 EAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKK 112
Score = 32.9 bits (75), Expect = 0.051
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
K + + + Q+ E EE E E+E E E E E++E+EE +++E+EE+ E+ +
Sbjct: 43 KENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQ 102
Query: 181 SRRVADK 187
+ K
Sbjct: 103 QEVFSFK 109
Score = 31.3 bits (71), Expect = 0.17
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
K E + + ++EEE++ E E E+++E E E E E++++E+ +EE+KEE+
Sbjct: 38 EKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEA 97
Score = 30.6 bits (69), Expect = 0.28
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 118 VNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
V SK E ++ + ++E E E + E++E+EE +E+E+EEE E+ K++E
Sbjct: 50 VKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQE 104
Score = 30.6 bits (69), Expect = 0.37
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E EE E+E+E E E+E+ E ++EKEE ++EE++EE E ++Q++ K
Sbjct: 55 EEQKIEYEEAEKEKEAGEPEREDIAE-QQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKK 112
Score = 28.6 bits (64), Expect = 1.3
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E K E + + + E E+ E +E+E+ +EE++EE+ E+ +++E + +K
Sbjct: 54 EEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKP 113
Query: 177 EQQIS 181
++++
Sbjct: 114 FKEMN 118
Score = 28.3 bits (63), Expect = 1.8
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
GE E++E+EE +EE++EEE ++ +++E + +K +E E++I
Sbjct: 71 GEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKPFKEMNLEEKID 124
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 39.3 bits (91), Expect = 8e-04
Identities = 17/61 (27%), Positives = 40/61 (65%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
M + ++++E+E+ +++++E++EE+EEE+EE + +++ EE+E E+ + D
Sbjct: 145 MSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVD 204
Query: 187 K 187
K
Sbjct: 205 K 205
Score = 38.5 bits (89), Expect = 0.002
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ EE+ +N + ++E+E E++ +EE+++EE++EEEE K
Sbjct: 139 HLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIK 181
Score = 36.9 bits (85), Expect = 0.004
Identities = 15/49 (30%), Positives = 35/49 (71%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E +S ++++ +E+E +++EE +EE+EEEEE+ + ++E++++E
Sbjct: 143 EDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDE 191
Score = 35.0 bits (80), Expect = 0.022
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 115 LVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
L E + P + + ++E++++EE++EEE+EEEEE + +E+EE E ++ +
Sbjct: 140 LAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYE 199
Query: 175 KEE 177
K E
Sbjct: 200 KSE 202
Score = 34.3 bits (78), Expect = 0.031
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EE+ + ++E E+E++ +E+ +EEE++EE++I
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEI 180
Score = 33.5 bits (76), Expect = 0.055
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EE+ + ++ +E+++E+++ EE EEEE++EE+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 28.9 bits (64), Expect = 2.1
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E + EE++EEEE EEEE + ++++EE E E+ +K E ++ +
Sbjct: 160 EDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTD 207
Score = 28.5 bits (63), Expect = 2.7
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+EE++EEE EEEE+ + + E+E++E E ++ E K +
Sbjct: 165 DDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTD 207
Score = 28.1 bits (62), Expect = 4.0
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
EE+ + + ++E+E E+ +EE+ +EE++ +
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEI 180
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 38.9 bits (91), Expect = 0.001
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
Q+ + ++ + EEEEE E +EK EE + E+E E ++ E++ + R
Sbjct: 174 QLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFER 230
Score = 32.7 bits (75), Expect = 0.11
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ EEE E KE EK+ E E EKEE +++ E+K Q++ R
Sbjct: 203 SKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELER 249
Score = 31.9 bits (73), Expect = 0.17
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ E + EK+ E E EKEE +K E+K +E + + +
Sbjct: 206 EEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEA 253
Score = 30.4 bits (69), Expect = 0.48
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ +EE + E E + E +E EK+ E E +KEE +K E+++
Sbjct: 194 LKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKL 243
Score = 29.6 bits (67), Expect = 1.1
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ-------KEEEEQKEEQQIS 181
E++ E E E++E ++ EE+ +E E++ + E Q E Q
Sbjct: 216 KEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQRE 272
Score = 28.8 bits (65), Expect = 1.9
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE---EKEEQKEEEEQKEEQQISRRVA 185
E +S +EE E++E E++ E E+E+EE + EE+ +E +++ + +++
Sbjct: 200 ELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLK 259
Query: 186 D 186
+
Sbjct: 260 N 260
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/42 (38%), Positives = 33/42 (78%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
G+H+ ++E+E +++E +EEE+++EE+ +E++ EEEE +K
Sbjct: 103 GQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
Score = 35.0 bits (81), Expect = 0.007
Identities = 17/39 (43%), Positives = 29/39 (74%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
HIS EE+E++++E++EEEE +EE ++E+E EE+
Sbjct: 100 HISGQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEE 138
Score = 33.1 bits (76), Expect = 0.032
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E+E ++EE++EEE +EE++ E++ EEEE ++
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
Score = 33.1 bits (76), Expect = 0.036
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
+EE+EEEE++EE+ +E+E +EEE ++ K
Sbjct: 117 DEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 33.1 bits (76), Expect = 0.041
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEE 157
E S+ EE+EEEE++EE++ E+E E+EE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 32.7 bits (75), Expect = 0.047
Identities = 14/36 (38%), Positives = 28/36 (77%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
EE+E ++ EE+EE+E+++E+++E E ++EE K+
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
Score = 31.9 bits (73), Expect = 0.084
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEE 158
+ + ++EE+EEE ++EE ++E+E EEE
Sbjct: 106 LVASEEDESDDDEEDEEEEDDEEDDDEDESEEE 138
Score = 29.6 bits (67), Expect = 0.57
Identities = 12/31 (38%), Positives = 25/31 (80%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EE+E ++E++EEEE +E+ ++E++ EE++
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 29.2 bits (66), Expect = 0.76
Identities = 11/31 (35%), Positives = 25/31 (80%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
EE++ +++E++EE+E++EE +++ E EE+
Sbjct: 108 ASEEDESDDDEEDEEEEDDEEDDDEDESEEE 138
Score = 26.1 bits (58), Expect = 7.5
Identities = 10/32 (31%), Positives = 27/32 (84%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
EE+E ++++E+EEE++++++++E + E++ S
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 38.5 bits (90), Expect = 0.001
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EE+ EE + EE+EEE++ E ++E+EE E+++EEE+ E +
Sbjct: 271 VVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 36.2 bits (84), Expect = 0.006
Identities = 16/39 (41%), Positives = 31/39 (79%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
E + +EEEEE++ +E E+++EE+E EEE+E+++E ++
Sbjct: 281 ELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 35.8 bits (83), Expect = 0.008
Identities = 16/40 (40%), Positives = 30/40 (75%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
E + EEEEEE++ E E E+EE+++EE+EE++++ ++
Sbjct: 280 EELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 34.6 bits (80), Expect = 0.018
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+EE+ E EK EEEE+E++ E E+++E+ E+EE++E+
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 33.9 bits (78), Expect = 0.037
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E + E+ EEEE EE++ E E+++EE E+EEE+E+ E ++
Sbjct: 277 EDLEELLEKAEEEE--EEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 32.3 bits (74), Expect = 0.099
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
+ + +E++ E E+E+EE E+EEE+E++ E ++
Sbjct: 283 LEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/30 (56%), Positives = 25/30 (83%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
N E++ EEEE+++EE+EEEEE+ E+ E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 38.5 bits (90), Expect = 0.001
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
++ Q++EEEE+E+EEEE+EEEE +E E EE
Sbjct: 340 TWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 38.1 bits (89), Expect = 0.002
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
E+++EEEE E+EE+EEEEE+ EE E EE
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 36.6 bits (85), Expect = 0.004
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
E+++EE E+E++EEEEE+EE +E E E+
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 36.6 bits (85), Expect = 0.005
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
E+++ EEE+++EEEE+EEE+ EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 35.8 bits (83), Expect = 0.008
Identities = 23/43 (53%), Positives = 29/43 (67%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
++ + E EEEE EEE E +EE E E+EEEEE EE +EEE
Sbjct: 162 VAEVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 35.0 bits (81), Expect = 0.019
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+++E+EE+E++EEE+EEEE +E + EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 34.7 bits (80), Expect = 0.024
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E+ +EEE++E+EE+EEE+EE EE E ++
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 33.9 bits (78), Expect = 0.042
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
E+++E EE+E EEEEE+EEE EE E +E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 33.5 bits (77), Expect = 0.056
Identities = 14/28 (50%), Positives = 25/28 (89%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E+++E+EE+++EEEE+EE++ EE + EE
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 33.1 bits (76), Expect = 0.060
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
HI E ++EE+E+E+E+EEE+EEE E+ E +E
Sbjct: 332 HILPQGRCTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 33.1 bits (76), Expect = 0.068
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E E E EEEE+EEE + +E++E EE+EE++ EE KEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEE 203
Score = 32.3 bits (74), Expect = 0.12
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++++EE+E+E EEEEE+EE+ EE E +E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 32.3 bits (74), Expect = 0.13
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
HI+ + EEEE EEEE+E E E E+ + E E +E +
Sbjct: 276 ATHIAPRGLYQLEEEEEEEEEEEPAERDELEENPDFEGLEVRELADS 322
Score = 31.2 bits (71), Expect = 0.34
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 29/75 (38%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEE-----------------------------K 165
Q EEEEEEE EEE E +E +E E E +
Sbjct: 286 QLEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPE 345
Query: 166 EEQKEEEEQKEEQQI 180
++ +EEE++ EE++
Sbjct: 346 QKDEEEEQEDEEEEE 360
Score = 30.8 bits (70), Expect = 0.46
Identities = 13/28 (46%), Positives = 23/28 (82%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E+K+EE+E+E+E+EE++EEE ++ E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEP 370
Score = 30.4 bits (69), Expect = 0.47
Identities = 12/28 (42%), Positives = 23/28 (82%)
Query: 152 EEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E+++E+EE+E++EE++EEEE +E +
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEP 370
Score = 28.5 bits (64), Expect = 2.5
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 124 TWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKE 160
TW E +E+E+EEEE EEEE+ EE E EE
Sbjct: 340 TWVNPEQKDEEEEQEDEEEE-EEEEEPEEPEPEEGPP 375
Score = 28.1 bits (63), Expect = 2.8
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E E +E EEE+EEE+ E ++E++ EEEE++E +++
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEV 199
Score = 27.7 bits (62), Expect = 4.6
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E E E EEEEE+EE E +EE E ++EEEE+ EE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEV 199
Score = 27.3 bits (61), Expect = 4.9
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEE 162
GE +E E +EE+E EE+EEEE +E KEEE
Sbjct: 170 GEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 26.9 bits (60), Expect = 6.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
EEEE+EEEEE+ E++E EE + + E ++ + V
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWV 327
Score = 26.9 bits (60), Expect = 7.1
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E E+EEE+EE E +E+ E EE++EE+
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEE 198
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 38.5 bits (89), Expect = 0.001
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 14/78 (17%)
Query: 31 LLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRN 90
L+N+ N P I+ YI+ + II +G+ GN + +IL K ++
Sbjct: 85 LINIKNKCMYPSIS---------EYIK----IFYIIIFILGLFGNAAI-IMILFCKKIKT 130
Query: 91 STNIFLMNLSIADLMVLL 108
T+I++ NL+I+DL+ ++
Sbjct: 131 ITDIYIFNLAISDLIFVI 148
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 38.9 bits (91), Expect = 0.001
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E EEEE+EEEE EEE+EEEEE+E EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 38.1 bits (89), Expect = 0.002
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
EEE+EEEEE EE+EEEEE+EE+ EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 37.3 bits (87), Expect = 0.003
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
EEEEEEE E E+EEEEE+EEE+ EEE
Sbjct: 305 PEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 37.3 bits (87), Expect = 0.003
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
E EEEEE EEE EEEEE+EEE+E E+E
Sbjct: 303 PEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 37.3 bits (87), Expect = 0.003
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
E EEE EEEE+ EEE+EEE+EEE EE+
Sbjct: 299 PPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 36.5 bits (85), Expect = 0.005
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E EEE+EEE+E EE+EE++EEEE+ E+++ VA+
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVRATVAE 340
Score = 26.9 bits (60), Expect = 7.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKE 156
P + E +EE EEEE EEEE+E E+E
Sbjct: 299 PPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 37.9 bits (88), Expect = 0.001
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK------EEQQI 180
M E I N + EEE E EE EE E+ EK E E E+ +E E K E Q I
Sbjct: 1 MSEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENKYLRAHAEMQNI 60
Query: 181 SRR 183
RR
Sbjct: 61 QRR 63
Score = 30.2 bits (68), Expect = 0.46
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
EE + EE EE+ E E EE EE EE +K E +++ AD
Sbjct: 3 EEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERAD 44
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 37.7 bits (88), Expect = 0.001
Identities = 10/57 (17%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 123 ETWQMG-EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E Q ++++++++++ ++++K+++ EK++EKE E++ E+ + +
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
Score = 37.0 bits (86), Expect = 0.002
Identities = 12/53 (22%), Positives = 40/53 (75%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++ E I ++E EE+++ + ++K+ +++K+++K+++++K++ K E++ ++E
Sbjct: 66 ELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Score = 35.8 bits (83), Expect = 0.005
Identities = 10/47 (21%), Positives = 38/47 (80%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
Q+ + +++++++++ +++++K+++K+++ EK+++KE E++ E+ S
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKS 128
Score = 33.5 bits (77), Expect = 0.031
Identities = 6/45 (13%), Positives = 37/45 (82%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
EE+++ + ++++ +++++K+++K+++++ ++ ++++E++ E ++
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 32.4 bits (74), Expect = 0.081
Identities = 11/51 (21%), Positives = 38/51 (74%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E+ ++++E EE E+ +KE EE+++ + ++++ K+++ +++++K++++
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKK 106
Score = 32.0 bits (73), Expect = 0.12
Identities = 8/53 (15%), Positives = 37/53 (69%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E+ ++E E +++ K ++++ +++K+++++K++ K++++ +++ + +D
Sbjct: 72 EKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 29.7 bits (67), Expect = 0.71
Identities = 6/48 (12%), Positives = 31/48 (64%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+++++++++++++K E+++++E +++ E+ + E + R+
Sbjct: 96 DKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRK 143
Score = 27.7 bits (62), Expect = 2.7
Identities = 9/59 (15%), Positives = 31/59 (52%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ W+ + ++++++++ ++++ E+++EKE E + E+ + E E +
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELK 140
Score = 27.0 bits (60), Expect = 5.1
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E E + +++E EE EK +++ EE++K + K+++ +K++ +
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDK 97
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 37.8 bits (88), Expect = 0.001
Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEE--------KEEEKEEEEEKEEQKEEEEQKEEQQ 179
S++ + +++ ++++ ++E K+E EE+E +EE+K EE+K ++
Sbjct: 124 SSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREE 179
Score = 37.8 bits (88), Expect = 0.001
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEE---EKEEEKEEEEEKEEQKEEEEQKEEQQI 180
S+ + +++ ++++ E E E E+ K+E E++E++EEE+ EE++
Sbjct: 124 SSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKA 176
Score = 35.5 bits (82), Expect = 0.010
Identities = 12/48 (25%), Positives = 32/48 (66%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S++ + + +++ +++ E+E +E E+ K+E+ EE+E++EE++
Sbjct: 122 SDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEK 169
Score = 34.3 bits (79), Expect = 0.024
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 132 SNTQEEEEEEE-----ENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
+ E+E E ++E+ EE+E+EEE++ EE++ ++EE
Sbjct: 136 DDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 32.8 bits (75), Expect = 0.072
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 136 EEEEEEEENEEEE---------KEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+ ++++ E+E KE EEKE E+EE+ +EE+ EEE
Sbjct: 134 DSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEI 181
Score = 32.0 bits (73), Expect = 0.14
Identities = 9/59 (15%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEE-----------EEEKEEQKEEEEQKEEQQISRR 183
++ + +++ + + +++ E++ E +E+++EEEE+ E++ +R
Sbjct: 120 DDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKARE 178
Score = 28.2 bits (63), Expect = 2.4
Identities = 7/50 (14%), Positives = 28/50 (56%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ + ++ +++ ++++ ++E E E+ K+E +++E++ + A
Sbjct: 122 SDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAA 171
Score = 26.6 bits (59), Expect = 8.2
Identities = 6/52 (11%), Positives = 22/52 (42%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
I + EE+ + ++ + + + +++ E + +E ++I +
Sbjct: 105 IKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKK 156
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 38.1 bits (89), Expect = 0.001
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ EEEEEE EE E+E EE+ + + EE KE+EE + Q+ +R
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQVIQR 196
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 37.7 bits (87), Expect = 0.001
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++E+ E+ E EE EE E E +E+ +E+E+Q+E+E ++EEQ I + D +
Sbjct: 124 RQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSE 177
Score = 35.0 bits (80), Expect = 0.009
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE-EQKEEEEQKEEQQ 179
E I ++E EE EE E E+ EE+ E E +EE+E+E E++ EEQ ++ +
Sbjct: 126 EQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSE 177
Score = 33.5 bits (76), Expect = 0.032
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE-EQKEEEEQKEEQQ 179
I Q E+ +E E EE+ E E +EE+ +E E++E +++E EEQ E+Q
Sbjct: 123 IRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQ 172
Score = 32.7 bits (74), Expect = 0.068
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
W+ E + +E++EE+E EE+ EE+ + E E E+ E + E ++ K E+
Sbjct: 144 WERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 31.6 bits (71), Expect = 0.17
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE--EQKEEQ 178
Q E + E E EE+ +E E +EE+E+E E++ EE+ + E E EQ E +
Sbjct: 133 QEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESE 187
Score = 30.8 bits (69), Expect = 0.29
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+E E++E +E E+EE+ +E+ + E E EQ E E + ++ + +
Sbjct: 152 DEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 30.4 bits (68), Expect = 0.43
Identities = 16/61 (26%), Positives = 36/61 (59%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E+ + E + E I +++EE+E E EE+ EE+ + E + E+++ E + ++++ E
Sbjct: 137 ELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTE 196
Query: 177 E 177
+
Sbjct: 197 K 197
Score = 28.5 bits (63), Expect = 1.7
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ EE+ +E E++E++E E +E+ EE+ + E + E+ + E + +K
Sbjct: 145 ERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 38.1 bits (88), Expect = 0.002
Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
EEEEE E EE EE EKE K +E+ EE +EEEE K
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEE-EEEEELK 176
Score = 36.2 bits (83), Expect = 0.008
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKE---EEKEEEEEKEEQKEEEE 173
+ + EEEEE E EE+E+ E+E +EK EEEE+EE K ++
Sbjct: 135 VPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 31.9 bits (72), Expect = 0.19
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EE EE E EE+EE E KE + +E+ EEEE++E + +
Sbjct: 140 LEEEEEVEMEEDEEYYE-KEPGKVVDEKSEEEEEEELKTM 178
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 37.4 bits (87), Expect = 0.002
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E++E++ + E+E EE EE+ EE++EE E +KE EE+ E
Sbjct: 72 AANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESN 117
Score = 37.4 bits (87), Expect = 0.002
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ +EEE+E E+KE++ + E+E EE EE+ E+++EE E ++ +
Sbjct: 61 EIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETE 111
Score = 36.3 bits (84), Expect = 0.005
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E++E++ + E+++EE E+E E+E+EE +E ++E E+K E + + + +
Sbjct: 70 KEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 29.7 bits (67), Expect = 0.71
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
EE EEE E E+EE +E EKE E++ E E++ K
Sbjct: 89 EESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWK 128
Score = 26.2 bits (58), Expect = 8.5
Identities = 10/48 (20%), Positives = 26/48 (54%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++ +E+E ++ ++E E EE +E+++E E+++ +D
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKED 88
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 37.9 bits (88), Expect = 0.002
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
M E + EE+ +EE+ ++++ + E E EE E ++ EE+E
Sbjct: 217 DMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDE 264
Score = 35.6 bits (82), Expect = 0.012
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 128 GEHISNTQEEEEEEEENEEEEKE----EEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E +EE E +E+EE+E E E EE E + E E E E +E E R
Sbjct: 244 NEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDAR 303
Query: 184 VA 185
A
Sbjct: 304 PA 305
Score = 35.6 bits (82), Expect = 0.013
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ G+ +EE+ ++++ + E+ E EE E +E EE + E E ++
Sbjct: 221 ETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEE 274
Score = 33.7 bits (77), Expect = 0.045
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
N ++ E EE+E ++ EE+E E E EE E E + E
Sbjct: 243 NNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSES 288
Score = 31.7 bits (72), Expect = 0.24
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ +++ + E+ E +EE E +E +E+E E + + EE + + + S
Sbjct: 234 EDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEAS 283
Score = 30.6 bits (69), Expect = 0.55
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE ++ EE+ +EE+ +++ + E+ E +EE E +E +
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESE 261
Score = 28.7 bits (64), Expect = 1.9
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 137 EEEEEEENEEEEKEEE--EEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE ++ EE+ EE+ +++ + E+ E E+ E ++ EE +
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDE 264
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 37.6 bits (87), Expect = 0.002
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++ E + + E E+EE+ ++++ E E+E++ E E E ++ +E E + + S
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESES 253
Score = 36.5 bits (84), Expect = 0.005
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+MG+ + EE+ ++++ E E+EE+ E E E +E +E + + + E + +
Sbjct: 202 EMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQS 261
Query: 186 DKD 188
D+D
Sbjct: 262 DQD 264
Score = 33.8 bits (77), Expect = 0.039
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E ++ E +EE+ ++++ E E+EE+ E E + +E +E + + R
Sbjct: 200 AEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDR 249
Score = 32.2 bits (73), Expect = 0.15
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E+ + + E E+EE+ E E + +E +E E + + E EEE
Sbjct: 208 ESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
Score = 30.7 bits (69), Expect = 0.49
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
N QEE+ E E E +E +E E E E EE+ + +Q +
Sbjct: 222 ENEQEEQGEGEG-EGQEGSAPQESEATDRESESGEEEMVQSDQDDLPD 268
Score = 27.6 bits (61), Expect = 5.1
Identities = 12/59 (20%), Positives = 22/59 (37%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
GE +E E + E + EEE + +++ E + E E + +R
Sbjct: 231 GEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGEGARPARPFTS 289
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 37.3 bits (86), Expect = 0.003
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E EEE EEE ++EE+ +++ +E+E+ ++ ++E+ ++E + D
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDS 93
Score = 35.0 bits (80), Expect = 0.015
Identities = 11/42 (26%), Positives = 32/42 (76%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E EEE EE++ EE+++ +++++E+++ ++ E++E +++
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDD 84
Score = 35.0 bits (80), Expect = 0.017
Identities = 10/43 (23%), Positives = 34/43 (79%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E EEE E E++++E++++ ++E E++++ ++ +++E++ ++
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 35.0 bits (80), Expect = 0.019
Identities = 15/52 (28%), Positives = 33/52 (63%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E EEE EEE+ +EE++ +++ E+E++ ++ +E+++ E+ S D
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSS 94
Score = 34.2 bits (78), Expect = 0.034
Identities = 9/46 (19%), Positives = 33/46 (71%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
++G+ EEE+++E ++++ ++E+E +++ +++E+ E++ ++
Sbjct: 40 KLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 30.3 bits (68), Expect = 0.52
Identities = 9/38 (23%), Positives = 31/38 (81%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
EEE+++EE+++++ +E+E+ +++ ++E++++E ++
Sbjct: 51 EEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDST 88
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 37.4 bits (87), Expect = 0.003
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ E EE +++ EE+ ++E E E E E + ++K + Q
Sbjct: 232 SRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQ 282
Score = 33.5 bits (77), Expect = 0.042
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 20/77 (25%)
Query: 132 SNTQEEEEEEEENEEEEKEEEE--------------------EKEEEKEEEEEKEEQKEE 171
+ +EE ++E E E E E KE E+E +EEK+ +K+
Sbjct: 247 DDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKL 306
Query: 172 EEQKEEQQISRRVADKD 188
+ ++I++ VA K+
Sbjct: 307 AQLARLKEIAKEVAQKE 323
Score = 32.0 bits (73), Expect = 0.14
Identities = 9/49 (18%), Positives = 27/49 (55%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E+ E E + +EE++ ++K + + ++ +E ++E+ +R+ +
Sbjct: 286 EKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRK 334
Score = 31.6 bits (72), Expect = 0.22
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 20/67 (29%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEE--------------------KEEEEEKEEQKEEEEQK 175
+++ EEE+++E E E E E + +E E+E ++E++ +K
Sbjct: 245 SDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKK 304
Query: 176 EEQQISR 182
+ Q++R
Sbjct: 305 KLAQLAR 311
Score = 31.2 bits (71), Expect = 0.24
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E +E E EE ++ EE+ ++E E E E + +
Sbjct: 229 PEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINK 271
Score = 30.1 bits (68), Expect = 0.59
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEE-------------EKEEEEEK 165
N E Q E + E+E + E+ +E + EE+K E E EE
Sbjct: 189 NPSFEDHQ--ELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESD 246
Query: 166 EEQKEEEEQKEEQQ 179
++ +EE + + +
Sbjct: 247 DDGEEESDDESAWE 260
Score = 29.7 bits (67), Expect = 0.95
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E +E E EE ++ +EE +++ + E + E
Sbjct: 228 APEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEP 268
Score = 29.7 bits (67), Expect = 1.0
Identities = 9/53 (16%), Positives = 28/53 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ E E +EE + ++K + + +E +E ++E+ ++++ ++ + K
Sbjct: 291 ELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLK 343
Score = 29.3 bits (66), Expect = 1.1
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+EE E+E K E++ +E E+ EE++ E+ E + +E D
Sbjct: 200 QEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDD 247
Score = 27.7 bits (62), Expect = 3.7
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E+ +E +EE EKE + E++ ++ E+ EE++ ++ + R+ +
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDE 236
Score = 27.4 bits (61), Expect = 4.8
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E+ +E +EE E+E + E++++E E EE+K E+ E ++
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEM 237
Score = 27.4 bits (61), Expect = 5.4
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++E E E + E++ K++ + KE +E ++++ +K+EQ+ R
Sbjct: 289 RKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERG 337
Score = 26.6 bits (59), Expect = 8.2
Identities = 7/55 (12%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 135 QEEEEEEEENEEEE-------KEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ +EE++ + + + +E +KE+ + ++E+ +++ E+++ + +++ +
Sbjct: 295 EAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRKLGK 349
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 37.0 bits (86), Expect = 0.003
Identities = 12/66 (18%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKE--EEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ S + + E ++EE K+ +E E ++ K++++++EE++ ++ +K++
Sbjct: 152 KHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQ 211
Query: 178 QQISRR 183
++ R+
Sbjct: 212 EEEERK 217
Score = 33.2 bits (76), Expect = 0.050
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE-------QKEEQQISRRV 184
+ + ++ ++ EE++++E EKE EE + Q+ +E QK +Q +R
Sbjct: 97 QAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRT 150
Score = 32.4 bits (74), Expect = 0.11
Identities = 10/39 (25%), Positives = 32/39 (82%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+E E ++ ++++++ EEE+ +++++++E+EE+K++ E+
Sbjct: 185 QEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEA 223
Score = 30.9 bits (70), Expect = 0.30
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE++++E E+E +E E + KE+ EE QK ++ K+
Sbjct: 107 LLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTP 151
Score = 30.5 bits (69), Expect = 0.42
Identities = 15/38 (39%), Positives = 29/38 (76%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
QE E ++ + +++++EEE K+ +K++EEE+ +QK EE
Sbjct: 185 QEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 28.5 bits (64), Expect = 1.7
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E++++E E E EE E + +EK EE +++ ++ +Q+ +
Sbjct: 109 EEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEA 157
Score = 27.8 bits (62), Expect = 3.2
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E +E E ++ ++++K EEE +++ K+++EE+E +++ EE
Sbjct: 178 EEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 27.4 bits (61), Expect = 4.9
Identities = 9/34 (26%), Positives = 26/34 (76%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+++++ EEE+ ++ +K++E+EE ++K E+ ++
Sbjct: 193 KQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 27.4 bits (61), Expect = 5.1
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEE--KEEEEEKEEQKEEEEQKEEQQ 179
++E E+E E E + +EK EE +++ ++ +Q+ + +KE +
Sbjct: 104 LQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAE 159
Score = 27.0 bits (60), Expect = 5.4
Identities = 8/32 (25%), Positives = 24/32 (75%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
++++++ EE +++++++E+EE K++ EE
Sbjct: 192 LKQQQQKREEERRKQRKKQQEEEERKQKAEEA 223
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 36.5 bits (85), Expect = 0.003
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
M E +EE EE E E E E EEE EE+ E E +E++ + + E +
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAK 52
Score = 36.5 bits (85), Expect = 0.003
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EEE EE E EE ++E EE+ E+E E E ++++ + + E ++
Sbjct: 6 EQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKL 53
Score = 35.4 bits (82), Expect = 0.007
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE+ E+ EE E+ E EE E++ EEE EE+ E E EEQ
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQA 44
Score = 35.0 bits (81), Expect = 0.011
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ E+ EEE E E +E E++ EE+ EEE E + +EEQ + ++ ++ +
Sbjct: 3 EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDEL 56
Score = 34.6 bits (80), Expect = 0.015
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EE+ E+ E E EE E EE E+E EEE +EE + E +E+ +I
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKI 46
Score = 33.8 bits (78), Expect = 0.025
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E EE E+ EEE EEE + E +EE+ K + E + + E++ R AD
Sbjct: 13 EETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLRLQAD 66
Score = 32.7 bits (75), Expect = 0.059
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
Q+ E + T+ EE E+E EEE EEE E E EE+ + E + + ++ EE
Sbjct: 7 QVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58
Score = 30.7 bits (70), Expect = 0.32
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E + + EEE EEE+E E +EE+ K E E + ++ E++ Q + + RR+
Sbjct: 19 EAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRI 74
Score = 30.7 bits (70), Expect = 0.33
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
EE+ + EE+ EE E EE E+E E+E +EE E + + ++A+
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAE 48
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 37.5 bits (88), Expect = 0.003
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ EE+ E EE +++++EEEE++E + E +
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 37.1 bits (87), Expect = 0.003
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ E + E E+ ++ E+EEE+E++ ++ +E ++ +V +K
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEK 223
Score = 36.3 bits (85), Expect = 0.007
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EE+ E E+ +++E EEE+E+E + +E E E+
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 31.3 bits (72), Expect = 0.26
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 29.0 bits (66), Expect = 1.8
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E E +++++EEEE++E + E + E+
Sbjct: 179 EEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 27.5 bits (62), Expect = 5.5
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EEEEE+E ++ +E E E+ E+ + +Q ++ + +E+++ R+A
Sbjct: 198 EEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQH 249
Score = 27.5 bits (62), Expect = 5.9
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
EE + + E E + + +E+ EE+ E +I R
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEIGR 101
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 36.5 bits (85), Expect = 0.003
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EE EE E EEE+ EEEE EEE E EEE++E E E Q EE +
Sbjct: 6 QKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELK 56
Score = 34.2 bits (79), Expect = 0.021
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EE + EE E E+ EEEE +EEE EEE E EE+++E + E Q
Sbjct: 5 EQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQ 51
Score = 33.5 bits (77), Expect = 0.032
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ K + + + + E+ EEEE EEEE EEE E EEE++E E E Q EE + K
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKY 59
Score = 26.5 bits (59), Expect = 7.4
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E E E E EEE++E E E + EE K++ + E E ++ E++
Sbjct: 18 EAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTERER 77
Query: 177 EQQISRRVAD 186
E+ +
Sbjct: 78 EEAKKYAIEK 87
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 36.8 bits (86), Expect = 0.003
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 70 IGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVC----TPTVLVE---VNSKP 122
G++ N ++ + LK ++NS I N +I++ ++ + P L++ +
Sbjct: 6 FGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSFLPELL 65
Query: 123 ETWQMGEHISNT 134
+ +G I
Sbjct: 66 NSH-IGGLILLG 76
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 37.2 bits (86), Expect = 0.003
Identities = 13/53 (24%), Positives = 34/53 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+++ +++EE EE + ++ E+E+ ++ EKE K +E+QK+ ++ ++ +
Sbjct: 78 EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLE 130
Score = 36.1 bits (83), Expect = 0.006
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEE-----EEKEEQKEEEEQKEEQQISRRVADK 187
EE + ++ E+E+ ++ EKE K +E EE E+Q + E++++E+Q + A++
Sbjct: 88 VAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQ 145
Score = 34.9 bits (80), Expect = 0.017
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE------EEQKEEQQISRRVA 185
++ EE + + E+E ++ E+E+ + +E+++Q EE EQK++++ +R+ A
Sbjct: 85 EEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAA 142
Score = 33.0 bits (75), Expect = 0.079
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E++ + E+ ++EE+ + E++K+ E K + E + + +++ A++
Sbjct: 123 AEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEE 175
Score = 32.6 bits (74), Expect = 0.085
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
Q + +++ ++ E++ +K+EE+ EE K +Q E+E+ ++ + R A +
Sbjct: 63 QYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQ 116
Score = 31.1 bits (70), Expect = 0.36
Identities = 11/57 (19%), Positives = 34/57 (59%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E + ++E + +E +++ +E E++ + E++++EE+ + E++K+ + + A
Sbjct: 101 ERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAA 157
Score = 30.7 bits (69), Expect = 0.43
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
V V+ Q G S ++ E++ +++E++ EE + ++ E+E+ +Q E+E K
Sbjct: 53 VMVDPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLK 112
Query: 176 EEQQ 179
++Q
Sbjct: 113 AQEQ 116
Score = 30.3 bits (68), Expect = 0.61
Identities = 12/53 (22%), Positives = 33/53 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
Q+ ++ E + ++KEE+ +E + ++ E+E K+ E+++ + Q ++ A++
Sbjct: 70 QQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEE 122
Score = 29.5 bits (66), Expect = 0.91
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 135 QEEEEEEEENEEEEKEEEEEK---EEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
Q E+E + E++++ EE EK E+K++EE+ + E+++K E ++ A+
Sbjct: 105 QLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAE 159
Score = 29.5 bits (66), Expect = 1.1
Identities = 11/58 (18%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEE----EKEEQKEEEEQKEEQQISRRVADKD 188
+ +E++++ EE EK+ + E+++++E+ E++++ E + K + ++ A +
Sbjct: 111 LKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAE 168
Score = 28.4 bits (63), Expect = 2.1
Identities = 9/52 (17%), Positives = 27/52 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
Q+++EE+ E++++ E + K E + + E +K+ ++ ++ +
Sbjct: 131 QKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEE 182
Score = 27.6 bits (61), Expect = 3.7
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEE------------EKEEQKEEEEQKEEQQISR 182
Q+EE+ + E++K+ E K + E E+ + EE + + + +
Sbjct: 133 QQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAA 192
Query: 183 R 183
+
Sbjct: 193 K 193
Score = 27.6 bits (61), Expect = 4.2
Identities = 10/51 (19%), Positives = 31/51 (60%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ E+E +E++++ EE E++ + E++++E++ + E+++ + K
Sbjct: 105 QLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAK 155
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 37.0 bits (86), Expect = 0.003
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
Q E +E E + EK E K+ EE E+ EE + ++ R+
Sbjct: 385 QLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRK 433
Score = 31.6 bits (72), Expect = 0.21
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 131 ISNTQEEEE-----EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+S +E + + E K+ EE EE EE + +K++ ++KE + R
Sbjct: 386 LSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFR 442
Score = 30.1 bits (68), Expect = 0.70
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+++ ++ E++ E+E +K E K E++E E ++ E+ +E +Q
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 28.9 bits (65), Expect = 1.6
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ I E E++ E E ++ E + EK+E++ EE EK ++ ++
Sbjct: 278 DKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 28.9 bits (65), Expect = 1.7
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE---------QK 175
E + EE EE EE + ++K+ +K+E EK + K
Sbjct: 400 KTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFRWFVSSDGFLVIGGRNAK 459
Query: 176 EEQQISRRVADKD 188
+ +++ ++ A+KD
Sbjct: 460 QNEELVKKYAEKD 472
Score = 28.5 bits (64), Expect = 2.5
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
++ E E+ E+E ++ E K E++E+E E+ E+ EE +++
Sbjct: 279 KIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 27.4 bits (61), Expect = 5.2
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ + + E KE E K E+ E +K EE +EE
Sbjct: 376 KGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREE 418
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 36.5 bits (85), Expect = 0.003
Identities = 15/52 (28%), Positives = 33/52 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
Q E EEEE+ +EEE+E + + E+ +++ +E +++E++++ R A+
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAAN 172
Score = 32.3 bits (74), Expect = 0.11
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E+ E EEEEK +EEE+E + + EQ +++ +E Q
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQ 159
Score = 28.1 bits (63), Expect = 2.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E+ + EEEEK +E+E E K EQ +Q ++
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKE 157
Score = 27.3 bits (61), Expect = 4.3
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEE---EEEKEEQKEEEEQKEEQQISRR 183
E+ E E EE+ EEE E+ + E+ + +QK +E QKEE + R
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
Score = 26.9 bits (60), Expect = 6.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E+ E +EEEK +EEE+E + + EQ ++ A +
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKE 157
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 36.3 bits (84), Expect = 0.003
Identities = 10/38 (26%), Positives = 28/38 (73%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE EKE+++ +E +E++ + +++++++ ++VA+K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEK 129
Score = 34.4 bits (79), Expect = 0.013
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
N EE E+E+ E ++ EE+E + K+E++EK+E+K E+ +++
Sbjct: 89 NLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKS 135
Score = 34.4 bits (79), Expect = 0.016
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
G I+ EE E+E++ +E EE+E + +KE++E+KE++ E+ K++ +
Sbjct: 85 GYSINLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTT 139
Score = 32.8 bits (75), Expect = 0.045
Identities = 13/42 (30%), Positives = 32/42 (76%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE E+E+++ ++ EE+E + K+E+++K+E++++ ++A K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKK 133
Score = 30.9 bits (70), Expect = 0.25
Identities = 12/53 (22%), Positives = 34/53 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E++E +E EE+E + +++++EK+E++ E+ +++ K + +++ K
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKK 149
Score = 30.5 bits (69), Expect = 0.30
Identities = 12/53 (22%), Positives = 35/53 (66%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E E+E++E +E +E+E K +++++E+++++ E+ +K+ + ++ K
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKK 145
Score = 29.0 bits (65), Expect = 1.0
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E Q+E +E E +E K ++E+KE+++++ EK +K+ + +
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNT 142
Score = 27.0 bits (60), Expect = 4.1
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+E EE+E + +KE++E+KE++ E+ K++ + +
Sbjct: 100 KEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTT 143
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 36.7 bits (85), Expect = 0.004
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEE-------KEEQKEEEEQKEEQQISRRVADKD 188
E + E+NE+E+ +E+E +++ EEEE ++ EE + + + + D
Sbjct: 216 PESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADD 275
Score = 35.6 bits (82), Expect = 0.010
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
M E + + E + E+ +E++ +E+E+ ++ +EEE + E+ ++
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEE 260
Score = 35.2 bits (81), Expect = 0.013
Identities = 10/52 (19%), Positives = 28/52 (53%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E E ++E+ E E++ +++E+ ++ EE+E + ++ S + +
Sbjct: 214 DEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGE 265
Score = 34.4 bits (79), Expect = 0.023
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
N E++ +E+E++++ +EEE + E+ + ++ E + E + S
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEAS 272
Score = 30.6 bits (69), Expect = 0.44
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+++++ EEE E+ + EE E E + E +
Sbjct: 234 EDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTP 277
Score = 29.8 bits (67), Expect = 0.72
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++ + EE E E E+ E+E++ +E +++++ +EE+ S +D
Sbjct: 199 VRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSED 253
Score = 29.0 bits (65), Expect = 1.4
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ Q EEEE ++ ++ + EE + E E E ++ +
Sbjct: 236 DDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSD 280
Score = 28.6 bits (64), Expect = 1.9
Identities = 10/49 (20%), Positives = 24/49 (48%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ E +E E + ++ E E++ +++E ++ E++E D D
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSD 255
Score = 27.9 bits (62), Expect = 3.1
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ + EEEE + + E+ + EE E E + + ++ +
Sbjct: 234 EDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDS 279
Score = 27.1 bits (60), Expect = 6.4
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+EEE ++ E+ + E+ E E E + + + +
Sbjct: 238 QGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 37.3 bits (87), Expect = 0.004
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S T+E EEE + E E + K+E++ EE EE++ ++
Sbjct: 229 TSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKT 277
Score = 36.5 bits (85), Expect = 0.006
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
T E EE EEE + E + E K ++E+E EE +++E DK
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDK 282
Score = 33.4 bits (77), Expect = 0.053
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE-----EQKEEQ 178
+E E EE EEE E E E K ++E+E EE+ E+KE+
Sbjct: 226 LKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDP 274
Score = 33.1 bits (76), Expect = 0.077
Identities = 13/49 (26%), Positives = 31/49 (63%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E S T+ ++E+E + EE+ E++E+ ++ E+ ++ + +E+K+E
Sbjct: 244 ETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDE 292
Score = 31.5 bits (72), Expect = 0.24
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++E+E EE+ EEKE+ + E+ + + +E++ EE
Sbjct: 252 TKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 30.7 bits (70), Expect = 0.44
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
I T E + ++E E +E+ EEKE+ ++ E+ + E KE++
Sbjct: 243 IETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKK 290
Score = 30.0 bits (68), Expect = 0.71
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
ET + E E E + ++E++ EE EE+E ++ E+ ++ E + +
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKK 290
Query: 183 R 183
Sbjct: 291 D 291
Score = 29.6 bits (67), Expect = 1.2
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
++E + + EE+ ++EE+KE+ K EE+E+ E E + Q R
Sbjct: 650 KKEFKILDYTEEKTKKEEKKEKNKREEKERIEIAETWDTIPLAQAIR 696
Score = 28.4 bits (64), Expect = 2.4
Identities = 10/30 (33%), Positives = 23/30 (76%)
Query: 149 KEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++++E K + EE+ K+E+K+E+ ++EE+
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEK 677
Score = 28.4 bits (64), Expect = 2.6
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 66 IILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETW 125
I C+ LG I P F L V +E S+ +
Sbjct: 207 FITCLYYLGRIPSP--------------FFTKKLKETSETEEREEETDVEIETTSETKGT 252
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
+ + S ++ EE E+ +K E+ +K E +E++++E
Sbjct: 253 KQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 28.0 bits (63), Expect = 3.2
Identities = 11/31 (35%), Positives = 24/31 (77%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
E+++E + + EE+ K+EEK+E+ ++EE++
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 26.9 bits (60), Expect = 8.2
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
N E+++E + + E++ ++E+++EK + EEKE
Sbjct: 643 FRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 26.5 bits (59), Expect = 9.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 149 KEEEEEKEEEKEEEE--EKEEQKEEEEQKEEQQIS 181
K +E + EE+EEE E E E + K+EQ+ S
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGS 259
Score = 26.5 bits (59), Expect = 9.8
Identities = 12/33 (36%), Positives = 26/33 (78%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EK++E + + EE+ +KEE+KE+ +++E+++I
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKERI 680
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 36.4 bits (85), Expect = 0.004
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E+E +E++ E++ +++++E+E+ EE+ + EE
Sbjct: 38 AATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 35.2 bits (82), Expect = 0.009
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + +EE+ E++ +++E+++E EEE
Sbjct: 34 AAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGP 75
Score = 32.2 bits (74), Expect = 0.11
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
+EE+ E++++++++E+E+ EEE + + EE +E
Sbjct: 48 LDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEARE 82
Score = 31.4 bits (72), Expect = 0.18
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ T E E + E+ E +++++++E++++EEE + + EE +E
Sbjct: 38 AATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEARE 82
Score = 31.0 bits (71), Expect = 0.24
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
N E E EE+ E +++ +E+E++++++E +
Sbjct: 33 NAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 31.0 bits (71), Expect = 0.27
Identities = 8/47 (17%), Positives = 25/47 (53%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
IS + E E ++E+ ++++++ E++ E++E++ +
Sbjct: 26 ISGFIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 29.1 bits (66), Expect = 1.0
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E E EE+ E++++ +E ++E++++E
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 29.1 bits (66), Expect = 1.3
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
E E++++++E+E+E+ EEE + + EE E+
Sbjct: 47 ELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEARER 83
Score = 27.5 bits (62), Expect = 3.3
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ E E +EE E+++ +++ E+E+ +EE +
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLG 74
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 36.6 bits (85), Expect = 0.004
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEE----EKEEQKEEEEQKEEQQ 179
E+E+++ + ++EE+EEKEEEK + K+ K + E+KE+ +
Sbjct: 27 EDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAK 73
Score = 36.6 bits (85), Expect = 0.004
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+EEE+E +EEEK + K + K+ + K E+KE+ ++++E++ R + +
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDT 88
Score = 35.4 bits (82), Expect = 0.009
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 136 EEEEEEEENEEEEKEEEEEKE----EEKEEEEEKEEQKEEEEQKEEQQ 179
+EEE+EE+ EE+ K + K + K EE+EK ++++EE+ E +
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85
Score = 32.7 bits (75), Expect = 0.069
Identities = 13/62 (20%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEE----------KEEQKEEEEQKEEQQISRRVAD 186
++E+E+++ ++ +EEE++E+E+E+ + K + +E+E+ K E++
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Query: 187 KD 188
++
Sbjct: 85 EE 86
Score = 32.3 bits (74), Expect = 0.10
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+E+E+ + E EE+ E EE E E E+ +K +EE
Sbjct: 67 EEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 31.2 bits (71), Expect = 0.28
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ + EE+E + EKEE+ +E E++ E++ +K + +E+
Sbjct: 61 ALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 30.4 bits (69), Expect = 0.38
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + EE E+ ++E+EE+ E EE+ ++E E+ ++ Q+
Sbjct: 63 KAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQE 104
Score = 28.1 bits (63), Expect = 2.3
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + EE+ + + ++EE+ E +E+ E E ++ +K +++
Sbjct: 63 KAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 36.4 bits (85), Expect = 0.004
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 68 LCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
IG+ GN+++ + K K +R+ + + +ADL+ L
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLS 41
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 36.2 bits (84), Expect = 0.004
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
Q G + ++ +++EE EE KE ++ ++ E +K++
Sbjct: 151 QAGLWYAERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 31.6 bits (72), Expect = 0.14
Identities = 8/39 (20%), Positives = 22/39 (56%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E ++ +++E+ EE++E +K ++ E K+++
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 30.0 bits (68), Expect = 0.53
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E ++ ++ EE EE +E ++ ++ E +++K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.9 bits (65), Expect = 1.1
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E ++ ++EE EE KE ++ ++ E +K++
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron
transporter VIT1.
Length = 209
Score = 36.1 bits (84), Expect = 0.005
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
GE++S E + EE E E E++E E + E E+EE E + E+ +Q++R +
Sbjct: 50 AGEYLSVKSERDLEEAELEREKRELENDPEGEREELAEIYRARGLSEE-LARQVARELMK 108
Query: 187 KD 188
KD
Sbjct: 109 KD 110
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 35.8 bits (83), Expect = 0.005
Identities = 18/44 (40%), Positives = 34/44 (77%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E E+E + EKE E E+EE+KE++++KE +KE++E+K++++
Sbjct: 132 SETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 35.1 bits (81), Expect = 0.009
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
T + E+E E EEEEK+E+++K+E K+E++EK+++KE+ + +
Sbjct: 134 TSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 35.1 bits (81), Expect = 0.009
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E E E E+E + EKE E EEEE+KE++K++E +KE++
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKK 168
Score = 34.3 bits (79), Expect = 0.020
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
S T E+E + +E E EEEE+KE++K++E +KE+ KE++++KE+ + K
Sbjct: 132 SETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEK-KEKKDKKEKMVEPKGSKKKK 187
Score = 32.4 bits (74), Expect = 0.090
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E +E E E+E + EKE E E+EE+KE++++KE ++ + DK
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 31.2 bits (71), Expect = 0.17
Identities = 14/42 (33%), Positives = 35/42 (83%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EEE++E++ ++E K+E++EK+++KE+ E + K+++++K++
Sbjct: 151 EEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 31.2 bits (71), Expect = 0.23
Identities = 13/45 (28%), Positives = 35/45 (77%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E EEEE+ E+++K+E +++++EK++++EK + + ++K+++
Sbjct: 145 KEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Score = 30.1 bits (68), Expect = 0.47
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E E E E+E + ++E E +EE+K+E+++K+E
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKE 162
Score = 30.1 bits (68), Expect = 0.47
Identities = 18/52 (34%), Positives = 37/52 (71%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E + E+ E E+EE++EK+++KE ++EK+E+K+++E+ E + S++ K
Sbjct: 138 ETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Score = 30.1 bits (68), Expect = 0.50
Identities = 14/56 (25%), Positives = 40/56 (71%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
K T ++ + +EE++E+++ +E +KE++E+K+++++ E K +K+++++K+
Sbjct: 137 KETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 36.2 bits (84), Expect = 0.005
Identities = 11/64 (17%), Positives = 25/64 (39%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
P + + + T ++ E+ E E+ ++ K Q EE +K Q++
Sbjct: 157 PARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216
Query: 182 RRVA 185
++
Sbjct: 217 SELS 220
Score = 28.9 bits (65), Expect = 1.6
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+S Q++ EE NE K E E + E E + ++R +
Sbjct: 219 LSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGET 275
Score = 28.9 bits (65), Expect = 1.7
Identities = 19/111 (17%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 79 PCVILKSKDMRNS----TNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNT 134
P +++ +D + S +N + A+ + L T L V ++ Q ++
Sbjct: 133 PALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQ--AELTTL 190
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E+ ++ + EE ++ + E +++K EE + E ++ +A
Sbjct: 191 LSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA 241
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 35.6 bits (82), Expect = 0.005
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E++E++EE EEE++EE EE E+ ++EEE E+++EEEE +E+
Sbjct: 45 DEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEED 87
Score = 34.8 bits (80), Expect = 0.010
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + + EEEEEE+E E EE E+ E++EE E+EEE+EE +E+ ++ +
Sbjct: 39 ENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIE 95
Score = 34.4 bits (79), Expect = 0.013
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ ++E++E++E EEEE EEE E+ E+ E+EEE E +EEEE+ EE + + +K
Sbjct: 42 DVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEK 96
Score = 34.4 bits (79), Expect = 0.014
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+EEE+EEE E E+ E+EEE E++EEEEE EE + + E++ I
Sbjct: 53 EEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNI 99
Score = 32.9 bits (75), Expect = 0.046
Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+++EEEEEE+EEE +E E+ ++EE+ E+E+EE+++EE+ + + I ++
Sbjct: 49 EDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKK 97
Score = 32.1 bits (73), Expect = 0.082
Identities = 22/56 (39%), Positives = 42/56 (75%)
Query: 124 TWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+W + I ++ ++E++E++EEE+EE+EE+ EE E+ E++EE E+EE++EE +
Sbjct: 30 SWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDE 85
Score = 30.6 bits (69), Expect = 0.31
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E I ++ E+EEE E+EE+EEE+E++ ++ EK+ + ++
Sbjct: 60 EEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQD 108
Score = 29.4 bits (66), Expect = 0.70
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+EE EE E+ E+EE+ E+E+EEE++EE+ + + E++ +
Sbjct: 59 EEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNIND 101
Score = 28.3 bits (63), Expect = 2.0
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E E+ E+EEE E+E+EEEE++E+ + ++ +++ +
Sbjct: 59 EEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNIND 101
Score = 27.9 bits (62), Expect = 2.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E E+ E+E E E EEEEE++EE + + E+K + Q
Sbjct: 62 IEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQ 107
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 35.8 bits (83), Expect = 0.006
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EEE+ + E E + E EE+ E++
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
Score = 33.5 bits (77), Expect = 0.034
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
EEE+ E E E E + EEE +K
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 33.1 bits (76), Expect = 0.055
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+E+ + + E E E E ++E E++
Sbjct: 116 EEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
Score = 31.9 bits (73), Expect = 0.11
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+EE+ E E E + E +EE E+K
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
Score = 31.2 bits (71), Expect = 0.23
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
EEE+ E E + E + EEE ++
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 30.0 bits (68), Expect = 0.51
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
+ E E E E E E+E +K
Sbjct: 118 DAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 29.6 bits (67), Expect = 0.83
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
+ T N E E E E E EEE EK
Sbjct: 121 APTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.8 bits (65), Expect = 1.4
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
E + E + E EE+ E+K
Sbjct: 120 AAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 36.5 bits (84), Expect = 0.006
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E EE E +E + E EK + + +E
Sbjct: 390 DAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDE 431
Score = 34.2 bits (78), Expect = 0.029
Identities = 6/53 (11%), Positives = 17/53 (32%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ + + + + E EE + +E + E + + + D
Sbjct: 375 QPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPA 427
Score = 33.8 bits (77), Expect = 0.044
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
Q G+ + + E EE E +E E E ++
Sbjct: 375 QPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAA 421
Score = 33.8 bits (77), Expect = 0.044
Identities = 6/46 (13%), Positives = 12/46 (26%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ + E +E E +E + E +K
Sbjct: 376 PGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAA 421
Score = 32.6 bits (74), Expect = 0.11
Identities = 8/54 (14%), Positives = 18/54 (33%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
T E + E E+ + + + + E E+ + + V +K
Sbjct: 366 TSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEK 419
Score = 31.9 bits (72), Expect = 0.18
Identities = 6/59 (10%), Positives = 18/59 (30%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + + + + E EE + ++ E E E+ + + +
Sbjct: 373 REQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDE 431
Score = 31.1 bits (70), Expect = 0.32
Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 1/59 (1%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKE-EEEEKEEQKEEEEQKEEQQISRRVADKD 188
I Q + + + + E +E E E E + E+ K
Sbjct: 371 IEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKP 429
Score = 30.7 bits (69), Expect = 0.49
Identities = 8/71 (11%), Positives = 19/71 (26%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ + + + + E ++E E E E+ + + E
Sbjct: 382 QAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDP 441
Query: 177 EQQISRRVADK 187
+ R D
Sbjct: 442 AEPDGIRRQDD 452
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 36.4 bits (85), Expect = 0.006
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++G + + EEEE +EE K E EE+ + + EE E +EE + + A
Sbjct: 26 ELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEA 85
Query: 186 DK 187
+
Sbjct: 86 AE 87
Score = 35.6 bits (83), Expect = 0.013
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
H S +EEE +EE + E +EE + + EE E +EE K E + + A
Sbjct: 34 HSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAA 89
Score = 34.8 bits (81), Expect = 0.023
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EEEE EE ++E EEE + E EE E ++E + + + A+
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEA 88
Score = 32.9 bits (76), Expect = 0.082
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EEEE + E + + EEE K E +E + E++ + E
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAA 89
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 36.4 bits (84), Expect = 0.006
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E+ +EE + + KEE +EK KE+E+EKE++ EE +EE++ RV K
Sbjct: 121 KEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172
Score = 36.0 bits (83), Expect = 0.007
Identities = 19/53 (35%), Positives = 37/53 (69%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E + E +EEEKE+E+ KEE+K+++E+ +E+ ++ + KEE + R +K+
Sbjct: 95 AKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKE 147
Score = 36.0 bits (83), Expect = 0.009
Identities = 15/48 (31%), Positives = 34/48 (70%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+++E+ +E ++ K +EE KE+ +E+EKE++K+ EE ++ ++ +R
Sbjct: 119 KKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Score = 35.6 bits (82), Expect = 0.009
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E +EEE+ +E+ KEE+++K+E+ +EE + + KEE ++K + + +K
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Score = 34.5 bits (79), Expect = 0.028
Identities = 18/52 (34%), Positives = 36/52 (69%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+EE ++ + +EE KE+ KE+EKE+E++ EE ++ EE+K+ +++ + K
Sbjct: 125 KEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPK 176
Score = 34.1 bits (78), Expect = 0.039
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ +EE +E+ +EKE+E+EK+ E+ + E+E+++E K + +
Sbjct: 132 KPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPK 180
Score = 33.7 bits (77), Expect = 0.044
Identities = 11/55 (20%), Positives = 31/55 (56%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E+ +E+ +E+EK+ EE ++ E+E++ E+ K ++ +++ + +
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPP 191
Score = 33.3 bits (76), Expect = 0.059
Identities = 14/45 (31%), Positives = 36/45 (80%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E+E+ +EE ++++++ +EE ++ K +EE KE++ +E++KE+++
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Score = 33.3 bits (76), Expect = 0.060
Identities = 15/61 (24%), Positives = 38/61 (62%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E Q +EE++++ E+ ++E ++ K +E+ +E+ ++KE+E++K+ ++ R +K
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
Query: 188 D 188
Sbjct: 165 K 165
Score = 33.3 bits (76), Expect = 0.070
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
+ + + + +E + E KEEEKE+E+ KEE+K+++E+ +E+ R+
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Score = 32.6 bits (74), Expect = 0.11
Identities = 15/54 (27%), Positives = 35/54 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+EE +E+ +E+EKE+E++ EE ++ EEEK+ ++ + + ++ ++ +K
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKK 187
Score = 32.2 bits (73), Expect = 0.13
Identities = 12/45 (26%), Positives = 30/45 (66%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++ + +EE +E+ +E+EKE+EK+ EE ++ ++E++ ++
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRA 171
Score = 32.2 bits (73), Expect = 0.16
Identities = 15/47 (31%), Positives = 34/47 (72%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ + E +EE +E+E+ +EE+K+++++ +EE +++K +EE KE+
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 28.7 bits (64), Expect = 2.1
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ EEE++ E + +K +K+ +K+E EEE+Q++ + + + ++
Sbjct: 159 DREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEE 210
Score = 28.3 bits (63), Expect = 3.0
Identities = 12/60 (20%), Positives = 32/60 (53%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ + +E+ + +E+EKE++ E+ ++EEE+++E + + K+ + K+
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
Score = 27.9 bits (62), Expect = 3.4
Identities = 11/52 (21%), Positives = 28/52 (53%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E+E++ EE + E+E++ E+ K ++ ++K ++KE + ++
Sbjct: 149 EKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAA 200
Score = 27.9 bits (62), Expect = 3.6
Identities = 13/56 (23%), Positives = 34/56 (60%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
S + + + + E +EEEKE+E+ +EE+K+++++ +E+ ++++ +K
Sbjct: 85 SKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 27.5 bits (61), Expect = 4.9
Identities = 11/53 (20%), Positives = 29/53 (54%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E+E+E++ E ++EEE+++E + + K+ K++ K+++ +
Sbjct: 147 EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQA 199
Score = 26.8 bits (59), Expect = 7.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E++ + + K EE + EE+E+EE+ + +E E+ SR+
Sbjct: 192 EEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQ 241
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 36.3 bits (84), Expect = 0.006
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 104 LMVLLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
L++ L+ P VL+ + G+ + ++ E+EE E++ +E+EE E EE+E
Sbjct: 7 LLLTLLAFPAVLLTFGN-------GKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDE 59
Query: 164 EKEEQKEEEEQKE 176
+ ++EE+E+ E
Sbjct: 60 NELTEEEEDEEGE 72
Score = 32.1 bits (73), Expect = 0.13
Identities = 11/38 (28%), Positives = 25/38 (65%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++ E+EE E++ E+E++E +E++ E E++E+
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEED 68
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 35.9 bits (84), Expect = 0.006
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
Q E E EEEE EEEEE+EEE+E EE + E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.0 bits (79), Expect = 0.030
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+ E E+EEEE +EEE+EEEEE+ E+ E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.6 bits (78), Expect = 0.037
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
E EEEEE EEE+EEEEE+E E+ E E
Sbjct: 227 GRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.2 bits (77), Expect = 0.051
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
+ E EEEE+E EEE+EEE+EEE E+ E +
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.2 bits (77), Expect = 0.056
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
E E EEEE E EE+EEEEE+EE +E E E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.2 bits (77), Expect = 0.057
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + E EE+EEE EEEEE+EE++E EE + E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.8 bits (76), Expect = 0.077
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+ + I ++ E EEEE+ EEEE+EEE+EE EE E
Sbjct: 217 IADAILEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 32.4 bits (75), Expect = 0.081
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ E +EEEEE EEE+EEEEE+E ++ E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.4 bits (75), Expect = 0.097
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
+ EE+EEE E+EEE+EEEEE EE + E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.4 bits (75), Expect = 0.10
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEE 162
G + EEEEEE EEEE+EEEEE+ EE E E
Sbjct: 224 GRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.1 bits (74), Expect = 0.13
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
+ E EEE+EE EE+EEE+EEEE +E + E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 29.4 bits (67), Expect = 1.0
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEE 158
Q + +EEEE EEE EEEE+EE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 28.6 bits (65), Expect = 1.7
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 149 KEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ E EE+EEE E+EE++EEEE+ EE +
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAE 256
Score = 28.2 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E ++ + E+EEEE +EE++EEEE++ E+
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEA 255
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 34.9 bits (81), Expect = 0.006
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ E+++EE + E ++ + EEK E E ++ +KE EE + E A+
Sbjct: 23 KWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEA 74
Score = 33.4 bits (77), Expect = 0.023
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E+ + E++ EE++ E E+ + EE+ E E +K E+E +E + R
Sbjct: 20 EKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELAR 67
Score = 32.2 bits (74), Expect = 0.052
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
QEE++ E E + EE+ + E ++ E+E EE + E ++E
Sbjct: 28 QEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 31.8 bits (73), Expect = 0.082
Identities = 12/50 (24%), Positives = 30/50 (60%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ I+ + + E+++E ++ E E+ + E++ E E E+ ++E E+ E +
Sbjct: 15 KAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAE 64
Score = 31.1 bits (71), Expect = 0.14
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E+ + E+K+EE++ E EK + EE+ E E +K E+++ A+
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAEL 65
Score = 29.9 bits (68), Expect = 0.36
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+++EE++ E E+ K EEK E + E+ EKE ++ E E + +
Sbjct: 26 KKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKA 72
Score = 29.1 bits (66), Expect = 0.66
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E++ E E+ + EE+ E E EK E+E +E + E ++ + + + +++K
Sbjct: 26 KKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKG 82
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 35.7 bits (83), Expect = 0.006
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+EEEEE E +E E EK+ +E +E+ +EEE + RR
Sbjct: 18 PSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRR 66
Score = 31.9 bits (73), Expect = 0.13
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ + EEEE E +E + E+K + +EE EE
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEE 55
Score = 30.7 bits (70), Expect = 0.31
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKE--EEEEKEEQKEEEEQKEEQQIS 181
S +EEEE E +E E EK+ E EE ++EE E+ ++++
Sbjct: 19 SPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLA 70
Score = 30.3 bits (69), Expect = 0.45
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
QE E E + ++ +EE EEE + E+ +K E K + S+
Sbjct: 28 LELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEKSK 80
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 36.2 bits (83), Expect = 0.007
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+E+++EE EN E KEE + + E EEKEE E EE + ++
Sbjct: 292 GDKEQQQEEVENAEAHKEEVQSDRPD-EIGEEKEEDDENEENERHTELLA 340
Score = 35.8 bits (82), Expect = 0.008
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S+ + Q E + N + +EE + + +E EE+E+++E EE E E +E + E+
Sbjct: 290 SEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKG 349
Query: 180 ISRRVADKD 188
I + +
Sbjct: 350 IEEKRRQME 358
Score = 33.1 bits (75), Expect = 0.068
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E +E E ++E+++EE E E +EE + + E E+KEE
Sbjct: 283 EIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEED 326
Score = 31.2 bits (70), Expect = 0.27
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+E E ++E ++EE E E +EE + + E +E+EE E ++ R
Sbjct: 287 KEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENER 334
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 35.8 bits (83), Expect = 0.007
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 135 QEEEEEEEENEEEEKEEEEEKE-----EEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+EEE++EE EEE+EEEE E+ E E + EE+ E+E Q+EE+ ++
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRV 90
Score = 32.0 bits (73), Expect = 0.14
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 10/60 (16%)
Query: 136 EEEEEEEENEEEEKEEEEEK----------EEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
EEEE++EE E EE+EEEEE E E ++EEE E++ + EE+ ++++ + A
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRVKTKA 94
Score = 30.0 bits (68), Expect = 0.64
Identities = 13/47 (27%), Positives = 31/47 (65%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E +EEEEE + + ++ +++E E ++E+E E+E + ++ +++K
Sbjct: 42 EFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKK 88
Score = 26.6 bits (59), Expect = 8.4
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
EEE E +E +EEE +EE E EE++EEEE
Sbjct: 19 EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEE 53
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 36.0 bits (83), Expect = 0.007
Identities = 17/43 (39%), Positives = 34/43 (79%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ N + ++EE+++ + + EE+E KE+E+EEE E+EE++E+E+
Sbjct: 242 VKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDED 284
Score = 34.0 bits (78), Expect = 0.026
Identities = 15/40 (37%), Positives = 33/40 (82%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
++ ++EE+++++ + EE+E +E++EEEE +EE++EE+E
Sbjct: 245 KKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDED 284
Score = 34.0 bits (78), Expect = 0.033
Identities = 17/37 (45%), Positives = 30/37 (81%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
EE+++++ + EEKE +E++EEE+ EEEE+EE ++E
Sbjct: 249 DEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 30.6 bits (69), Expect = 0.48
Identities = 14/40 (35%), Positives = 30/40 (75%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+ + ++++++ + EE+E +E+EE+EE +EEEEE++E
Sbjct: 245 KKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDED 284
Score = 30.2 bits (68), Expect = 0.62
Identities = 14/38 (36%), Positives = 30/38 (78%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++ ++EE+ +++ + EEKE +E++EE++ EEE++EE
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEE 281
Score = 28.3 bits (63), Expect = 2.1
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
+ EE+E +E+E+EEE E+EEE+E+E+E
Sbjct: 255 QDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 28.3 bits (63), Expect = 2.1
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKE 160
+ EE+E +E+ EEEE EEEEE+E+E E
Sbjct: 257 GDYVEEKELKEDEEEEETEEEEEEEDEDE 285
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 35.9 bits (83), Expect = 0.008
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ Q+ E+E+E + + E+ +K+EE E +++KE EE + +++I + + +K
Sbjct: 69 LSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKE---MEELKAVQKKIDQYIKEK 121
Score = 32.4 bits (74), Expect = 0.11
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ +E E E+ +K+EE E +++KE EE K QK+ ++ +E+Q+S
Sbjct: 76 DEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLS 124
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 36.1 bits (84), Expect = 0.008
Identities = 12/54 (22%), Positives = 35/54 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+++E+++E+++++ ++E++E+++ +E EK ++ E+ + R A KD
Sbjct: 150 DDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKD 203
Score = 35.7 bits (83), Expect = 0.009
Identities = 8/42 (19%), Positives = 33/42 (78%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+++++E+++E+++ ++ ++++EEK+E +E E+ ++++ +
Sbjct: 149 DDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWD 190
Score = 35.7 bits (83), Expect = 0.010
Identities = 9/53 (16%), Positives = 37/53 (69%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ ++++E++++++ ++++EE+++ +E E+ + ++ +E+ E + +R+ A
Sbjct: 152 DDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDA 204
Score = 34.2 bits (79), Expect = 0.030
Identities = 10/42 (23%), Positives = 33/42 (78%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++++ ++++++E+ +E+++ ++ +E+EEK+E KE E+ ++
Sbjct: 143 DDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Score = 34.2 bits (79), Expect = 0.032
Identities = 10/53 (18%), Positives = 35/53 (66%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++++++ ++E+EEK+E +E E+ ++++ ++ + E ++ ++ ++ A D
Sbjct: 159 DDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATAD 211
Score = 32.7 bits (75), Expect = 0.093
Identities = 8/49 (16%), Positives = 34/49 (69%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ + ++ ++++ +++++ E+++E +++ + ++E EE+KE +E ++
Sbjct: 133 DDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181
Score = 31.9 bits (73), Expect = 0.16
Identities = 8/42 (19%), Positives = 32/42 (76%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+++ ++++++E++ E++++ + + E+EE+KE ++ E+ ++
Sbjct: 144 DDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDD 185
Score = 31.5 bits (72), Expect = 0.26
Identities = 6/44 (13%), Positives = 30/44 (68%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ ++++++ +++E +++++ ++E EE++E +E ++ + +
Sbjct: 145 DDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFV 188
Score = 30.7 bits (70), Expect = 0.38
Identities = 9/53 (16%), Positives = 32/53 (60%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++++++E+++E+ ++++ +E++E++E KE +K ++ A +
Sbjct: 147 IDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQ 199
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 35.4 bits (81), Expect = 0.008
Identities = 16/50 (32%), Positives = 33/50 (66%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
H+ T+ + +++E E++EK EE E + EK+E+ ++ Q + + Q++ QQ
Sbjct: 144 HMMKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
Score = 30.0 bits (67), Expect = 0.52
Identities = 10/54 (18%), Positives = 35/54 (64%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ ++ +++E +E +E+ +E E + E++++ ++ + Q + ++Q ++ ++R A
Sbjct: 148 TKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKA 201
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 35.4 bits (81), Expect = 0.009
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
KP+ Q+ + +E + EE+ +EE+EEEE +EE K+EE + +
Sbjct: 196 KPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 35.4 bits (81), Expect = 0.010
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ +E +E K EE++ +EE+EEEE +EE K+EE Q +
Sbjct: 204 SKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 33.9 bits (77), Expect = 0.035
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+E +E++ EEK+ +EE+EEE+ EEE K+E+ + +
Sbjct: 207 QEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 33.5 bits (76), Expect = 0.040
Identities = 16/55 (29%), Positives = 34/55 (61%)
Query: 124 TWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ +G + + ++E+ + ++ +E K EEK+ +EE+EE++ EEE K+E+
Sbjct: 183 SLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 31.9 bits (72), Expect = 0.16
Identities = 15/41 (36%), Positives = 30/41 (73%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E+ ++ +E +E + EE++ +EE++EE+ EEE ++EE Q
Sbjct: 199 QEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQ 239
Score = 31.2 bits (70), Expect = 0.23
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
Q + +E +E + EE++ +EE++EEE E+E ++EE + ++
Sbjct: 201 QLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 29.6 bits (66), Expect = 0.70
Identities = 14/50 (28%), Positives = 31/50 (62%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ + ++E+ +E +E + +E++ +EE+E+EE +EE +Q+E Q
Sbjct: 190 VQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQ 239
Score = 29.2 bits (65), Expect = 0.98
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
Q + + ++ + K +E +E + EE++ +EEQ+EEE ++E +Q
Sbjct: 191 QVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQ 235
Score = 28.5 bits (63), Expect = 2.2
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ + + ++E+ K +E +E + EE++ +EEQ+EE+
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVE 230
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 35.9 bits (83), Expect = 0.010
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E NTQ EEE+EE E ++ E E E++ EE++++ E ++ ++
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKRE 61
Score = 35.2 bits (81), Expect = 0.019
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 127 MGEHISNTQEEEEEEEENE---EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E ++ EEE+EEE E + ++ E E+E+E EE EE E + +IS+R
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60
Score = 32.1 bits (73), Expect = 0.16
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E ++ + + +++E E+++E+EE +EE E + E K E+ + +E +
Sbjct: 19 EAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELK 69
Score = 29.0 bits (65), Expect = 1.5
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE----------EKEEQKEEEEQKEEQ 178
E + + +++E E+E+E EE+ EE E EK KE ++QK+++
Sbjct: 16 EELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQE 75
Score = 28.6 bits (64), Expect = 2.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEE 161
+ +T + E EE + EE+EEKE+ EE
Sbjct: 786 AHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
Score = 28.6 bits (64), Expect = 2.7
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
++E+EE++E E + E K E+ +E K+++K+E ++ EQQ
Sbjct: 38 DEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQKILEQQ 83
Score = 27.8 bits (62), Expect = 3.9
Identities = 13/56 (23%), Positives = 38/56 (67%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
S++ ++E E+ +E+E+++EE + K E ++E+ + +E +K+++Q +++ ++
Sbjct: 27 SDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQKILEQ 82
Score = 27.1 bits (60), Expect = 7.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E Q ++ + ++ + E EE + EE+E++EQ EE
Sbjct: 779 EVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
Score = 27.1 bits (60), Expect = 7.6
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEE+ + +EE++EE E + +E D++
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEE 44
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 35.8 bits (82), Expect = 0.010
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E ++EE EE EE E K E++ + EE +++E++ E EE+++ ++ S
Sbjct: 114 EEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGS 166
Score = 35.4 bits (81), Expect = 0.011
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 112 PTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
PT + S+P + + + EEEE+E EE+EE EE E + E++ + + E
Sbjct: 86 PTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAE 145
Query: 172 EEQKEEQ 178
E QKEE+
Sbjct: 146 ECQKEEK 152
Score = 34.6 bits (79), Expect = 0.025
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEE-----KEEQKEEEEQK 175
KP + + + +E+ ENE E+EE+EE EE+EE EE K EQK +
Sbjct: 85 KPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDA 144
Query: 176 EEQQ 179
EE Q
Sbjct: 145 EECQ 148
Score = 33.9 bits (77), Expect = 0.043
Identities = 19/51 (37%), Positives = 36/51 (70%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E EE +++ EE K EEE++ K+EE +++ ++EEE+++ +++I RR A
Sbjct: 214 LELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRA 264
Score = 33.1 bits (75), Expect = 0.063
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+E EE EE EE E + E++ + + EE +++++E E +EE++ R
Sbjct: 117 EESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKR 164
Score = 33.1 bits (75), Expect = 0.078
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ EE + EEE++ ++EE + + EEEEK KEE E++ + +R
Sbjct: 220 KKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKR 270
Score = 30.4 bits (68), Expect = 0.55
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
EEEE+ ++EE + + +EEEK +E+ E++ E ++ Q++
Sbjct: 231 EEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVP 274
Score = 30.4 bits (68), Expect = 0.60
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E +E E+ +++++E E EE K++ EE+ + EEEEQ+ +Q+ + R
Sbjct: 197 EAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADR 244
Score = 30.0 bits (67), Expect = 0.70
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+EE + E EE+ +++EE + +EEEE++ ++E E ++ E R+ +D
Sbjct: 223 REERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPED 276
Score = 30.0 bits (67), Expect = 0.75
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEE----EENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
N E + E +E EE E E + + ++ EE ++EEKE E E+EE+ +
Sbjct: 106 AENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRG 165
Query: 173 EQKE 176
+E
Sbjct: 166 SLEE 169
Score = 30.0 bits (67), Expect = 0.82
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E EE ++ EE ++ EE+E+ +++EE + +EEEE++ ++ R
Sbjct: 215 ELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRA 264
Score = 28.8 bits (64), Expect = 1.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
T+ E++ + + EE ++EE+E E EEEEK ++ EE E
Sbjct: 133 TKSEQKNDWRDAEECQKEEKEPE---PEEEEKPKRGSLEENNGE 173
Score = 28.8 bits (64), Expect = 1.9
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE---QKEEQQISR 182
+ ++ E E+ E E +EEEKEE E+ E+ EE E + E++ R
Sbjct: 83 EFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWR 142
Query: 183 RVADKD 188
+
Sbjct: 143 DAEECQ 148
Score = 26.5 bits (58), Expect = 9.3
Identities = 12/46 (26%), Positives = 29/46 (63%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
++ EEEE+ ++E+ + + +EEE++ ++E ++ E E++Q
Sbjct: 226 RRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQ 271
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 35.6 bits (82), Expect = 0.010
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 112 PTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
P + + + ++ IS EEEE EE E+EE+E EEE EE + + EE E
Sbjct: 56 PYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEA 115
Query: 172 EEQKEEQQ 179
EQ EE +
Sbjct: 116 SEQLEEHE 123
Score = 30.6 bits (69), Expect = 0.40
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+E EE+EEE EEE EE E + EE E EQ EE E+ + + + V
Sbjct: 84 VEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEGFQAMVEQAVER 136
Score = 28.3 bits (63), Expect = 2.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEE----EKEEEEEKEEQKEEEEQKEEQQIS 181
E ++ N + E++E + E E EEEE EE +E+EE++ E++
Sbjct: 48 AEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESE 100
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 34.7 bits (80), Expect = 0.011
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E++E +E E + ++E+++E + EEE+ ++EEE E +
Sbjct: 20 DEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEA 64
Score = 34.3 bits (79), Expect = 0.015
Identities = 14/43 (32%), Positives = 30/43 (69%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E EE+E++E ++EE + ++E++EE + EE++ ++EE+
Sbjct: 15 ELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 32.7 bits (75), Expect = 0.048
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+EEE + ++E++EE + EEE+ +EE+ + E + E +
Sbjct: 25 SSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDR 68
Score = 32.7 bits (75), Expect = 0.053
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ-QISRRVADKD 188
+ E ++ EE+ E E++E++E +E+E + +EQ EE + +EEQ ++R+ + D
Sbjct: 2 GSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVD 59
Score = 29.3 bits (66), Expect = 0.78
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
S+ +EE + ++ ++EE + EEE+ +EEE + + E E +E
Sbjct: 25 SSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDRE 69
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 35.6 bits (83), Expect = 0.011
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEE-EEEKEEQKEEEEQKEEQQ 179
I++ +E E E E+ EE + +E E+ KEE EE+KE+ +EEE++ E+
Sbjct: 522 IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571
Score = 34.8 bits (81), Expect = 0.022
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE-QQI 180
E++ EE E +E E+ +E+ EEK+E+ ++EE K EE ++E QQ
Sbjct: 532 LEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578
Score = 34.4 bits (80), Expect = 0.027
Identities = 15/51 (29%), Positives = 34/51 (66%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+E E++ EE E KE E+ KEE +E++E+ +E++++ ++ E++ + +
Sbjct: 530 RELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIK 580
Score = 32.5 bits (75), Expect = 0.13
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 129 EHISNTQEEEEEE-EENEEEEKEEEEEKEEEKEEEEEKEEQKEE-EEQKEEQQISRR 183
+ I +E+ E EE E+E E++ EE + +E E+ KEE EE+KE+ Q
Sbjct: 509 KLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEED 565
Score = 30.6 bits (70), Expect = 0.56
Identities = 16/49 (32%), Positives = 34/49 (69%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E E+ +EE EE++++ +EE+++ EE E++ +Q +E +KE +I +
Sbjct: 544 KEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKE 592
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 35.5 bits (83), Expect = 0.012
Identities = 20/56 (35%), Positives = 38/56 (67%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
Q E++ E E+ EE E++++E E+K++E E++EE+ E+ EE+ +E ++IS
Sbjct: 93 QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIS 148
Score = 34.8 bits (81), Expect = 0.019
Identities = 16/57 (28%), Positives = 37/57 (64%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ ++ ++EEN + + E E++EEE E++E++ EQK++E +K+E+++ +
Sbjct: 82 NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
Score = 34.4 bits (80), Expect = 0.027
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 135 QEEE---EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
Q+EE + E E+ E+E E++++E +++++E E+++EE E+ E+Q+
Sbjct: 93 QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 31.7 bits (73), Expect = 0.21
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ + E E EEE E++E++ E+K++E EK+E++ EE +E+ Q R++
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIS 148
Score = 30.5 bits (70), Expect = 0.54
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE----EQKEEEEQKEEQQISRR 183
E I + E E+E E ++ E++ +KEE +++ E++EEE +K+E+++ ++
Sbjct: 64 EEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQK 122
Score = 30.1 bits (69), Expect = 0.72
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 136 EEEEEEEENEEEEKEEE--EEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
EE ++E E ++E E EE + + E E++ ++ E QK E+++ ++
Sbjct: 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQK 94
Score = 29.4 bits (67), Expect = 1.2
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEK----EEEEEKEEQKEEEEQKEEQQISRRV 184
E +++E E++E E EE EE+ +E E+ EE KE E+ E++ + + +
Sbjct: 116 EKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLI 175
Score = 29.4 bits (67), Expect = 1.3
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE-EQKEEEEQKEEQQISRR 183
+ E ++ E +KEE +++ E E+ E+E E+KE+E ++++Q++ ++
Sbjct: 77 LRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKK 129
Score = 27.8 bits (63), Expect = 4.0
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 137 EEEEEEENEEEEKEEE-EEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E +EE E E+E E+ E ++ E++ QKEE ++ + + +R
Sbjct: 61 EAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 35.2 bits (81), Expect = 0.013
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 126 QMGEHISNTQ-----------EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
ISN + EEE +E EE EKE+++ E E +EEKE+ + EE Q
Sbjct: 57 SQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQ 116
Query: 175 KEEQQ 179
+
Sbjct: 117 YLREY 121
Score = 29.8 bits (67), Expect = 0.80
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEEN------EEEEKEEEEEKEEEKEEEEEKEEQKE 170
E+ + + + E + E N E +E ++EEE+ ++ EE EKE+
Sbjct: 37 ELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDL 96
Query: 171 EEEQKEEQQISRRV 184
+ E E Q+ ++
Sbjct: 97 DGELVELQEEKEQL 110
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 33.8 bits (78), Expect = 0.013
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEE 164
EEK+EEEE+EEEKEE EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEE 95
Score = 33.4 bits (77), Expect = 0.016
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEE 164
EE+KEEEEE+EE++E EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 33.4 bits (77), Expect = 0.019
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEE 162
E++E+EEEEE++EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 33.0 bits (76), Expect = 0.020
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEE 163
EE+++EEEEE+E+E+ EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 33.0 bits (76), Expect = 0.027
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEE 172
E+++E+EEEEE++E+ EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 32.2 bits (74), Expect = 0.041
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEE 158
EE++ EEEE+EE+EE EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 32.2 bits (74), Expect = 0.041
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKE 166
E+++EEE+EEE++EE E+E
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
Score = 32.2 bits (74), Expect = 0.042
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
E ++EE+EEEEEKEE +EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 31.8 bits (73), Expect = 0.050
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEE 171
EEK+EE+EEEEEKEE +EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 31.8 bits (73), Expect = 0.061
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEE 167
EE++E+EEE+EE+EE EE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEE 95
Score = 31.5 bits (72), Expect = 0.075
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 135 QEEEEEEEENEEEEKEEEEEKE 156
EE++EE EEEE++EE E+E
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
Score = 31.5 bits (72), Expect = 0.088
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEE 167
+E++EE+EEE+E+EE +EE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 31.1 bits (71), Expect = 0.097
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEE 173
+E+++EEEEE+E+++ EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
Score = 31.1 bits (71), Expect = 0.11
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEE 173
EEK+EEEE+EE+KEE E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESE 94
Score = 31.1 bits (71), Expect = 0.12
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEE 167
EE+++EEE+EEE+E+ E
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESE 94
Score = 31.1 bits (71), Expect = 0.12
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEE 173
EE+KEEEEE+EE++E EE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEE 95
Score = 30.3 bits (69), Expect = 0.22
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEE 157
EE++E EEEE+E+EE +EE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 29.2 bits (66), Expect = 0.49
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKE 176
E+++EEE+EE+++EE ++E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 156 EEEKEEEEEKEEQKEEEEQKEE 177
EE++E+EE++EE+E+ EE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEE 95
Score = 27.6 bits (62), Expect = 1.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 152 EEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E++EE+EE++E+EE +EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 27.6 bits (62), Expect = 1.9
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 156 EEEKEEEEEKEEQKEEEEQKEEQQIS 181
EE+++EE++EEE+++ E++ +
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEEAA 98
Score = 26.5 bits (59), Expect = 4.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 135 QEEEEEEEENEEEEKEEEEE 154
++EEEEEEE +EE +EE
Sbjct: 80 KKEEEEEEEEKEESEEEAAA 99
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 35.4 bits (81), Expect = 0.013
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+M + E E E+ +E E+ EE+K EEEE E+KE EQ ++
Sbjct: 130 EMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREK 183
Score = 31.9 bits (72), Expect = 0.18
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEK------------EEEEEKEEEKEEEEEKEEQKEEEE 173
M S EEEEEE+E+ E+E E ++ +E E+ EE+K EEE
Sbjct: 108 DMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEE 167
Query: 174 QKEEQQISRRVADK 187
+ E++ S A +
Sbjct: 168 EAGEEKESVEQATR 181
Score = 31.5 bits (71), Expect = 0.27
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E + + E E + + E E+++E++ EEEE EE++ E+ E+
Sbjct: 128 EDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREK 183
Score = 30.3 bits (68), Expect = 0.59
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ + + + N E E+ ++E E +EE++ EEE+ EE++ ++ E+K
Sbjct: 126 SLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKF 185
Query: 177 EQQI 180
++
Sbjct: 186 DKSG 189
Score = 29.2 bits (65), Expect = 1.6
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
EHI + ++ E + + + + ++ +EEEE+E++ E+E
Sbjct: 86 EHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEM 131
Score = 28.8 bits (64), Expect = 1.7
Identities = 14/63 (22%), Positives = 36/63 (57%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ +P+ + + + EEE+EE++ +E++++EEE E ++ + E E + + +
Sbjct: 277 DDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPK 336
Query: 179 QIS 181
++S
Sbjct: 337 ELS 339
Score = 28.8 bits (64), Expect = 2.0
Identities = 12/61 (19%), Positives = 35/61 (57%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ + E E++E ++E ++E + + E+E+EE+ E++ +++E++ + +V
Sbjct: 264 DKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLD 323
Query: 188 D 188
+
Sbjct: 324 E 324
Score = 26.5 bits (58), Expect = 9.6
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ ++EE++E+E++++E+E E ++ + +E E + E KE +R
Sbjct: 289 ADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKELSSFEKR 344
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 34.5 bits (80), Expect = 0.013
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE------QKEEQQI 180
M T +E+ EE E E++EE ++ E ++E +E + + E E Q EE+
Sbjct: 1 MSNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERDS 60
Query: 181 SRRVA 185
R
Sbjct: 61 VLRAR 65
Score = 29.5 bits (67), Expect = 0.82
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ E E E++ E +E E E+E +E E E Q E + +E + R A
Sbjct: 16 EIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERDSVLRARA 66
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 35.1 bits (81), Expect = 0.014
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
V V SK E + ++++ E++ E +++ E++K++++EK+E K E E K
Sbjct: 31 VLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETK 90
Query: 176 EEQQISRRVADK 187
+ ++
Sbjct: 91 LGFKTPKKSKKT 102
Score = 27.8 bits (62), Expect = 4.2
Identities = 13/65 (20%), Positives = 31/65 (47%)
Query: 111 TPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
T E N T + + E +++ E ++++K+E++E + E E + + K+
Sbjct: 39 LSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKK 98
Query: 171 EEEQK 175
++ K
Sbjct: 99 SKKTK 103
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 35.2 bits (81), Expect = 0.014
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
+ N+ EE + + ++ E E+E E E ++E ++
Sbjct: 537 LRNSTEERIDLDADDWTEDEDENEMETDEERKK 569
Score = 32.5 bits (74), Expect = 0.11
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 149 KEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
EE + + + E+E E + E +E++++ R+ +
Sbjct: 541 TEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYN 578
Score = 32.1 bits (73), Expect = 0.17
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKE-------------EEKEEEEEKEEQKEEEEQK 175
E I ++ E+E+ E E +EE +K ++ + + EE++ + K
Sbjct: 543 ERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKMK 602
Score = 31.0 bits (70), Expect = 0.33
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEE 167
EE + + + E+E E E E +EE+++
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKK 569
Score = 30.6 bits (69), Expect = 0.56
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
N EE+ + + + ++E+E + E EE ++
Sbjct: 539 NSTEERIDLDADDWTEDEDENEMETDEERKKP 570
Score = 29.8 bits (67), Expect = 0.81
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQK 169
EE + + ++ E E+E E E ++E +K
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKK 569
Score = 27.9 bits (62), Expect = 3.8
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEE-----------EEEKEEEKEEEEEKEE 167
NS E + E+E E E +EE +K ++ + K EEE+
Sbjct: 539 NSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAA 598
Query: 168 QKEEEEQKEEQQISRRVAD 186
K + E+ + R V +
Sbjct: 599 LKMKMTDTSEKPLWRNVVN 617
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 35.4 bits (82), Expect = 0.014
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
P W++ + +E+EE+E E++ + +++EE+K++E EK E+
Sbjct: 542 PSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 35.4 bits (82), Expect = 0.014
Identities = 14/37 (37%), Positives = 29/37 (78%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+++EE + E+EEKE KE++ ++ +K+EE++K+E +
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELE 584
Score = 34.6 bits (80), Expect = 0.026
Identities = 14/45 (31%), Positives = 34/45 (75%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+++EE + E+EEKE +E++ ++ ++++E++K+E E+ E+ +I
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIP 592
Score = 34.6 bits (80), Expect = 0.027
Identities = 12/35 (34%), Positives = 27/35 (77%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
Q E+EE+E +E+++ + +K+EEK+++E ++ +K
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.8 bits (78), Expect = 0.042
Identities = 11/42 (26%), Positives = 30/42 (71%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+++EE + +EE++ +E+K K +++E++++KE E+ ++
Sbjct: 547 LDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.8 bits (78), Expect = 0.044
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E+EE E ++++ K +++EE+++KE +K E+ + + +R DK
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDK 603
Score = 32.7 bits (75), Expect = 0.097
Identities = 14/41 (34%), Positives = 30/41 (73%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+EE + E+E +E KE++ ++ +K+EE++K+E ++ E+ K
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 31.2 bits (71), Expect = 0.34
Identities = 10/38 (26%), Positives = 26/38 (68%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
+ E+EE+E +E+K + K++E+++++E E+ ++
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 30.0 bits (68), Expect = 0.73
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+++EE + EKEE+E +EQK + K++++ ++ +K
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 33.5 bits (77), Expect = 0.014
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEE 162
E EEEE+EEEEE+EEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.1 bits (76), Expect = 0.022
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEE 172
EE+EEE+EEEEE+EE+ EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.1 bits (76), Expect = 0.023
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEE 161
EE EEEE+EEEEE+EE +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.1 bits (76), Expect = 0.024
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEE 171
EEE+EEE+EEEEE+EE +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.026
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEE 167
E+EEEEE+EEE+EEEE +EE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.032
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEE 158
EEEE EEEE+EEEEE+ EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 32.3 bits (74), Expect = 0.034
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEE 164
EEE+EEEEE+EEE+EE EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 32.3 bits (74), Expect = 0.040
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEE 173
E+EEE+EEEEE+EE++ EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.3 bits (74), Expect = 0.043
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEE 164
EEEE+EEEEE+EEE+E EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.9 bits (73), Expect = 0.046
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEE 163
EEEE+EEEEE+EEE+ EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.9 bits (73), Expect = 0.047
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKE 160
EEE EEEE+EEEEE+E E+E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.6 bits (72), Expect = 0.081
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKE 156
EEEEEEE EEEE+EEE E+E
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.2 bits (71), Expect = 0.089
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEE 167
+EEEEE+EEE+EEEEE EE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEE 94
Score = 30.4 bits (69), Expect = 0.17
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEE 173
+EEE+EEEEE+EE++E EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 30.0 bits (68), Expect = 0.25
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 153 EEKEEEKEEEEEKEEQKEEEEQKEE 177
E+EEEEE+EE++EEEE +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 29.6 bits (67), Expect = 0.35
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 152 EEEKEEEKEEEEEKEEQKEEEEQKE 176
EE+EEEEE+EE++EEE ++E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 29.2 bits (66), Expect = 0.43
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQ 174
EEE+EEEEE+EE++EE E+
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 29.2 bits (66), Expect = 0.44
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQ 168
EEEEE+EEE+EEEEE+ E+
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 26.9 bits (60), Expect = 2.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 156 EEEKEEEEEKEEQKEEEEQKEEQQ 179
EEEE+EE++EEEE++E ++
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 26.5 bits (59), Expect = 4.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 156 EEEKEEEEEKEEQKEEEEQKEEQQI 180
EEEEE+EE++EEEE++ E++
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEEA 96
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 35.0 bits (81), Expect = 0.016
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ E+E+ EEEK E + +EE ++ + + ++ EE + E + +
Sbjct: 16 RKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGG 70
Score = 33.9 bits (78), Expect = 0.040
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E+ E EE + E +EE ++ E + EE +E E K
Sbjct: 19 TEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPA 63
Score = 32.3 bits (74), Expect = 0.13
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E + +E+ E EEEK E +EE ++ E ++ EE
Sbjct: 9 AELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEEL 54
Score = 31.2 bits (71), Expect = 0.26
Identities = 10/60 (16%), Positives = 27/60 (45%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ + + E EEE+ E + +EE +K + + + E+ + E + + +++
Sbjct: 17 KLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEE 76
Score = 29.6 bits (67), Expect = 0.84
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E +E + E E+ E EEEK E + +E+ ++ + + ++
Sbjct: 9 AELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELL 55
Score = 29.6 bits (67), Expect = 0.90
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E + E+ + E EEE+ + + +EE +K + + + ++ ++ + A
Sbjct: 12 AKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAAS 65
Score = 29.2 bits (66), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E E +E K E+EK E EEE+ + + +EE K + +I R
Sbjct: 5 REALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDR 50
Score = 29.2 bits (66), Expect = 1.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E E +E + E E+ E EEEK E +E+ ++
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDK 43
Score = 28.9 bits (65), Expect = 1.7
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEE+ E + +EE ++ + + + EE ++ E K + K
Sbjct: 28 EEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEAKA 80
Score = 27.7 bits (62), Expect = 3.6
Identities = 10/58 (17%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEK----EEQKEEEEQKEEQQISRRVADKD 188
+ +E + E+E+ E EE++ E + +E+ + + + E+ ++ ++ A +
Sbjct: 10 ELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGE 67
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 35.1 bits (81), Expect = 0.017
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+E E+ E EE ++E EE+ EE EE E EE + E +++
Sbjct: 347 EELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAE 394
Score = 35.1 bits (81), Expect = 0.018
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E + EE E E E EE EE +EK E +EE E+ E EE ++ ++
Sbjct: 299 ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358
Query: 183 RVADKD 188
+ +
Sbjct: 359 AKEELE 364
Score = 35.1 bits (81), Expect = 0.019
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
I +EE EE E EE ++ E EE KEE EEK EE ++ + + +A+
Sbjct: 332 IEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387
Score = 33.5 bits (77), Expect = 0.053
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ +E EE +E E KEE EE+E EE E+ + EE +++ E+++S + + +
Sbjct: 316 NELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375
Score = 33.1 bits (76), Expect = 0.086
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E + + EE E+ E +E +EE EE+ E+ E+ E ++E ++ +A+
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396
Score = 32.4 bits (74), Expect = 0.14
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E ++ +EE EE EE + +EE EE EEE EE E + + E E + EQ+ R
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825
Score = 32.4 bits (74), Expect = 0.14
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E + EE +E+ E +EE EE E EE E+ + E+ +EE +++ + + +
Sbjct: 319 EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377
Score = 32.4 bits (74), Expect = 0.16
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++ + I +EE EE EE +E +EE EE E+E EE +E+ E+ E E+++ E ++
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884
Query: 186 DKD 188
+K+
Sbjct: 885 EKE 887
Score = 32.0 bits (73), Expect = 0.19
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ +EE EE E+ EE KEE EE E EKEE E++ ++ EEE+++ E+++
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893
Score = 32.0 bits (73), Expect = 0.20
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++ E +E E+E EE +EE +E E EKEE ++E +E EE+KEE E++ + S
Sbjct: 843 KLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
Query: 186 DKD 188
K+
Sbjct: 903 LKE 905
Score = 32.0 bits (73), Expect = 0.21
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+EE EE E +E EE E E EE EE+ E+ +E+ + ++++ R
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL 346
Score = 31.6 bits (72), Expect = 0.26
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E +EE EE EE EE E EE + E + E + E +++ R + +
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410
Score = 31.2 bits (71), Expect = 0.36
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E ++ + + +EE+EE EE E + E E +EE E+ E+ E+ E + ++ E ++
Sbjct: 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELP 929
Score = 30.1 bits (68), Expect = 0.78
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ EE EEE E E+ + KEE +E EE+++ +EE E+ EE+
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEE 801
Score = 29.7 bits (67), Expect = 0.95
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEE-----KEEQKEEEEQKEEQQI 180
Q+ + +EE EE EE EE +E EE EEE E EE KEE +E EE+++ Q
Sbjct: 734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQE 793
Query: 181 SRR 183
Sbjct: 794 ELE 796
Score = 29.7 bits (67), Expect = 1.0
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEE E +EE EE E++ EE + E E+ ++ EE Q+E ++ + + +
Sbjct: 252 EEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301
Score = 29.7 bits (67), Expect = 1.0
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
+ + EE EEE EEE EE +E+ EE E+E E+ + + EE ++E +++ +
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290
Score = 29.3 bits (66), Expect = 1.2
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E + ++ +EE E EEE EE E + + E E E EQ+ E ++E +++ + +
Sbjct: 782 EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839
Score = 29.3 bits (66), Expect = 1.2
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
++ E + QEE EE E+ EE K E EE EE EE +E+ + +EE ++ E +IS
Sbjct: 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISL 306
Score = 29.3 bits (66), Expect = 1.3
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E + +E EEE E E+E EE +E+ EE E E+E+ E + +E ++E++++ + +
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896
Score = 29.3 bits (66), Expect = 1.3
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+EE E+ + EE +EE EE EEE EE +E+ E+ EEE + E+ +++ + +
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782
Score = 29.3 bits (66), Expect = 1.3
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++ E + + E+EE E+ +E +EE+EE EEE E E + + +EE +K +++ A
Sbjct: 860 ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEA 919
Query: 186 DKD 188
+
Sbjct: 920 KLE 922
Score = 28.9 bits (65), Expect = 1.7
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E + +E E+E E EEE EE EEK +E EEE E+ E++ EE ++E +++ +
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEE 874
Score = 28.9 bits (65), Expect = 1.7
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE EE E +E E + E E E EE K E E EE+
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERL 413
Score = 28.9 bits (65), Expect = 1.8
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E + E +EE E E EE E+ E EE +E+ E+K +E +++ + ++
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREE 384
Score = 28.9 bits (65), Expect = 2.1
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EEE EE E E EE +E E+ EE+ E E+ K +EE +E ++ + + ++
Sbjct: 742 LEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE 794
Score = 28.1 bits (63), Expect = 2.9
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 115 LVEVNSKPETWQMGEHISNTQEEEEEEEENEEEE--KEEEEEKEEEKEEEEEKEEQKEEE 172
L E+ + E + + EE E E+ E E+ KE EEEKEE +EE E E + E
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903
Query: 173 EQKEEQQISRR 183
+++ E+ R
Sbjct: 904 KEEIEKLRERL 914
Score = 28.1 bits (63), Expect = 3.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+E EE+ EE +E E EE E E + + E ++ +++I
Sbjct: 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408
Score = 28.1 bits (63), Expect = 3.4
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E +EE E +EE +E E E +E EE E + EE E++ E+ + A K
Sbjct: 284 EELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK 336
Score = 27.8 bits (62), Expect = 3.8
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ +EE E EE + KEE EE EE+++ +E+ E+ EEE ++ E+++
Sbjct: 760 LEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810
Score = 27.8 bits (62), Expect = 4.1
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
EE +EE E E+E EE + + EE EE E+ +++ E ++E +++ ++
Sbjct: 256 EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEIS 305
Score = 27.8 bits (62), Expect = 4.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E + +E E+ + EE E+E EE +EE +E +E EE +EE E EE +
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778
Score = 27.0 bits (60), Expect = 7.8
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ + + + EE E EE K E EEE E+ + + E+ EEE ++ E+++ +
Sbjct: 702 DLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLE 761
Score = 27.0 bits (60), Expect = 8.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++ EE EEE E EE+ EE ++ E+ EEE + ++ + KEE +
Sbjct: 736 QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790
Score = 27.0 bits (60), Expect = 8.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 135 QEEEEEEEENEEEEKE------EEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E EE EE EE ++E E EE E E E+ E+ E E ++ E+++ +
Sbjct: 274 SELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIE 333
Score = 27.0 bits (60), Expect = 8.6
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E S Q E E+E EE E+E EE +E+ E EEE EE ++E E+ +E+
Sbjct: 814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEE 864
Score = 27.0 bits (60), Expect = 9.0
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 115 LVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
L + + E+ + + EE EEE E EEK +E E+E E+ E+E +E ++E EE
Sbjct: 809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEEL 868
Query: 175 KEE 177
+ E
Sbjct: 869 EAE 871
Score = 26.6 bits (59), Expect = 9.2
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
I N EE + E E+ EE E E+ E+ +EE ++ E + EE Q E ++++ +
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL 448
Score = 26.6 bits (59), Expect = 9.3
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 129 EHISNTQEEEEEEEENEEEEKEE-EEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E + E EE +EE EE EE+++ +EE EE EE+ EE E++ +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDA 811
Score = 26.6 bits (59), Expect = 9.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
EE EE E +EE E E E E + E+ + E + E+++ R
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 35.0 bits (80), Expect = 0.018
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
S+ +E+EE +E+ E+ E+E E + EE+ E ++ E + + + RR
Sbjct: 949 SDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGKRR 1000
Score = 32.3 bits (73), Expect = 0.16
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE--EEEQKEE 177
S+ E E+ +++ +E +E +E+EE ++ E+ E+E E + EE E +E + +
Sbjct: 934 SEEEV---SEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKA 990
Query: 178 QQISR 182
SR
Sbjct: 991 AYDSR 995
Score = 30.4 bits (68), Expect = 0.70
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ E +E EEE E E ++E +E E+EE E ++ E + E S
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSS 975
Score = 29.2 bits (65), Expect = 1.6
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E ++E +E +E EE +E E+ E+E + + +EE+ ++ ++ + A
Sbjct: 942 EASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAA 991
Score = 28.8 bits (64), Expect = 1.7
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E S+ E E ++EE +E + E E E + +E++ E+ E + +
Sbjct: 935 EEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDS 994
Query: 176 E 176
Sbjct: 995 R 995
Score = 28.4 bits (63), Expect = 2.3
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++E +E+EEE E E ++E +E +E EE E E E + +D++
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEE 978
Score = 28.4 bits (63), Expect = 2.4
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ ++EE E E + ++E +E +E EE E E+ E + E + +E+
Sbjct: 929 DESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEED 979
Score = 28.1 bits (62), Expect = 3.6
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
+ S E+E E ++ +EE E+ ++ E K + + ++
Sbjct: 958 SDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGKR 999
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 34.2 bits (79), Expect = 0.019
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
Q G + ++ + EE EE + KEEE E E+KE +K++
Sbjct: 151 QAGLWYAEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 32.7 bits (75), Expect = 0.058
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E ++ + EE EE E +EEE E +K+E ++K+
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 32.3 bits (74), Expect = 0.090
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++ K EE EE E +E++ E +K+E
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 31.5 bits (72), Expect = 0.14
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E ++ + EE EE E KEEE + E+KE +++K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 31.5 bits (72), Expect = 0.16
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E ++ + EE EE E +EEE E +
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGE 188
Score = 30.8 bits (70), Expect = 0.26
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E ++ + E+ EE E +EE+ + E++E K+++
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 34.6 bits (80), Expect = 0.020
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ EEE E+++ E EEE++ E + EE
Sbjct: 261 PPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 34.2 bits (79), Expect = 0.029
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+ EE E+ ++ E+EEE+++ ++ +
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298
Score = 33.8 bits (78), Expect = 0.046
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ EEE E+ ++ E EE++++ E + ++I
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEI 300
Score = 31.9 bits (73), Expect = 0.18
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ EEE E++ + E++EEQ + E++ E+ +
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIV 301
Score = 28.1 bits (63), Expect = 3.0
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+EE E++ + E++EE+ + E+ E
Sbjct: 265 PEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 33.9 bits (78), Expect = 0.020
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
++EE E+E E+EE+ + E EKE E ++++ E + KEE++I
Sbjct: 80 KKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKI 124
Score = 29.6 bits (67), Expect = 0.61
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
++E+E+EE + E E+E+ E ++++ E + KEE++
Sbjct: 84 AEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 33.1 bits (76), Expect = 0.020
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
E E +E EEEE++EE +EE ++
Sbjct: 72 AAAAGAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 31.6 bits (72), Expect = 0.087
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E E +E EEE++EEE +EE ++
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 31.2 bits (71), Expect = 0.11
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E E ++ EEEEKEE+ EEE
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEES 99
Score = 30.1 bits (68), Expect = 0.28
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEE 173
E + +E EEEE++EE +EE +
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESD 100
Score = 30.1 bits (68), Expect = 0.29
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEE 162
E E +E EE+E+EEE EEE +++
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 29.7 bits (67), Expect = 0.31
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
E E E EEE++EE+ EEE ++
Sbjct: 70 AAAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 27.8 bits (62), Expect = 1.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 149 KEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E E +E +EE+KEEE ++E
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEES 99
Score = 27.4 bits (61), Expect = 2.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E E +E +EEE+E+E ++E ++
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 26.2 bits (58), Expect = 6.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E E +E EE+E+++E EE+ ++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDD 101
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 33.9 bits (78), Expect = 0.020
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E E++ EEE EEEEE EE+ EEEE+E Q+ ++EE+
Sbjct: 69 ARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDS 116
Score = 32.8 bits (75), Expect = 0.051
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
EEEEE+ E E EE+EEE ++ EEEEE + +E EE++ R
Sbjct: 83 AEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELRE 131
Score = 32.4 bits (74), Expect = 0.066
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E++EEEE EEEE++ EEE EEE+EE + +EEEE +
Sbjct: 74 LEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYD 118
Score = 31.6 bits (72), Expect = 0.12
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E E++EEEE+ EEE+E+ EE+ EE+EEE ++ EEEE+ +
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSY 117
Score = 29.7 bits (67), Expect = 0.53
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+++EEEE EEEE EEE +EEE+E + ++EEE+ ++
Sbjct: 75 EQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDEL 120
Score = 28.5 bits (64), Expect = 1.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
N +EEEE + EE+EE+ + +E EE+EE +EE
Sbjct: 89 DPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREE 132
Score = 28.2 bits (63), Expect = 2.0
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ + EEE EEE EE ++ E+EEE + ++ EE E+ E+ IS
Sbjct: 77 QEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFISE 136
Score = 27.0 bits (60), Expect = 5.0
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ EEEEEE EEEEE + +E EE++E E+ + R ++ +D
Sbjct: 90 PEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFISEMHQRFLSGED 146
Score = 26.6 bits (59), Expect = 6.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E + E +E+ EEE E EEEE + EEE EE+ + ++ E++EE
Sbjct: 75 EQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEE-EEDGDSYDELPTPEEREEL 129
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 34.7 bits (80), Expect = 0.021
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEE---------EKEEEEEKEEQKEEEEQKEEQQISRRV 184
T+ E ++ + E+EE+ E+E +EE E + K E + E +E +++ R
Sbjct: 105 TRNYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRR 164
Query: 185 ADKD 188
AD D
Sbjct: 165 ADVD 168
Score = 34.0 bits (78), Expect = 0.037
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 129 EHISNTQEEEEEEEENEEEEKE------------------EEEEKEEEKEEEEEKEEQKE 170
E+ + + E E E EE KE E+KEEE+EEEE++ K
Sbjct: 138 ENRTADSKREMEVLERLEELKELQSRRADVDVNSMLEALFRREKKEEEEEEEEDEALIKS 197
Query: 171 EEEQKEEQQISRRVADKD 188
E ++ RR D+D
Sbjct: 198 LSFGPETEEDRRRADDED 215
Score = 31.3 bits (71), Expect = 0.26
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+EEEEEEEE+E K E E++ +E E++E+
Sbjct: 182 KEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDN 223
Score = 29.3 bits (66), Expect = 0.99
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E++EEEE EEE++ + E EE++ +E+ + +E
Sbjct: 178 RREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDE 220
Score = 27.0 bits (60), Expect = 7.1
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 133 NTQEEEEEEEENEEEEKEE-----EEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++EEEEEEE +E + E E++ + ++E+ E+ +E+ + + K
Sbjct: 179 REKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSSPAK 238
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 33.2 bits (76), Expect = 0.022
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEE-EKEEQKEEEEQKEEQQIS 181
E EE+ EEEEK E EEK+ +EE E ++EE E++E+++++
Sbjct: 35 AELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMT 80
Score = 32.4 bits (74), Expect = 0.033
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ I+ EE+ EEEE E E E++ +EE +E +EE+ EEEE KE
Sbjct: 31 KDEIAELTEEQGEEEEKNEVE-EKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 30.5 bits (69), Expect = 0.21
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
G + ++E E E+ E+EE+ E EE++ EEE ++ EE++ E++
Sbjct: 23 GRGNWGSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEE 74
Score = 30.1 bits (68), Expect = 0.28
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E + E +++ EEE N+E EEEE +EEE +E +E +K +E++
Sbjct: 38 TEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEKR 92
Score = 28.5 bits (64), Expect = 0.79
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 115 LVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
L E + E E +EE +E EEEE EEEE+KE EE E+ ++K
Sbjct: 37 LTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEK 91
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 34.5 bits (79), Expect = 0.023
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
T+E +EE E+E E E E+ E E E + + E + E
Sbjct: 342 VVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETE 387
Score = 34.5 bits (79), Expect = 0.024
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E ++ E EE +E E+E E +E EE E E E Q ++
Sbjct: 321 FGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDD 378
Score = 34.1 bits (78), Expect = 0.031
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E++E + EE +EE E E E +E +E + E + + ++ R+A+
Sbjct: 336 EKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAE 385
Score = 28.4 bits (63), Expect = 2.7
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE--EQKEEQQISRRVADK 187
E E E +E + EE +EE E+E E +E EE E + + +A++
Sbjct: 330 EVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 34.6 bits (79), Expect = 0.023
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 118 VNSKPETWQMGEHISNTQEEEEEE-EENEEEEKEEEEEKEE----EKEEEEEKEEQKEEE 172
+S E Q+ E+ E+ + E ++N+EE + ++ K E + E++ E KE E
Sbjct: 266 TSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELE 325
Query: 173 EQKEEQQIS 181
QK+ + ++
Sbjct: 326 AQKKREPVA 334
Score = 28.4 bits (63), Expect = 2.2
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE--QKEEQQ 179
Q +E +++ E + + + KE+++ E QK E E Q E ++
Sbjct: 246 QRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKK 292
Score = 27.7 bits (61), Expect = 4.2
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
QE + + + +E+++ E ++ E EK + + ++ +E + A
Sbjct: 255 QEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAF 306
Score = 27.7 bits (61), Expect = 4.7
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEE--ENEEEEKEEEEEKEEEKEEEEEK-EEQKEEEE 173
EV K + + ++T +E+++ EN++ E E+ + + ++ +EE K ++ K +
Sbjct: 249 EVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDL 308
Query: 174 QKEEQQISRRVADK 187
++E + + DK
Sbjct: 309 KQESKASEKEAEDK 322
Score = 26.5 bits (58), Expect = 9.9
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKE-EEKEEEEEKEEQKEEEEQKEEQQISR 182
+H + ++E + E E E+KE E +K+ E E+ +K + + E + + +
Sbjct: 302 DHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAI 356
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 34.8 bits (80), Expect = 0.023
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
VL +K Q+ E +E+E++ EE +++E E E ++ E E E + E+ +E+E+
Sbjct: 631 VLKADENKSRHQQLFE---GEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQ 687
Query: 174 QKE 176
+ +
Sbjct: 688 EDD 690
Score = 32.2 bits (73), Expect = 0.14
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEE-KEEEEEKEEQKEEEEQKEEQQ 179
E EEE+E++ EE +++E++ E ++ E E E E+ E+ E++
Sbjct: 641 HQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQED 689
Score = 28.7 bits (64), Expect = 2.3
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E+ E E + E EE+E+E++ E E + +
Sbjct: 669 EDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRA 707
Score = 28.3 bits (63), Expect = 2.9
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEE--EKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++ E+E E E+ E E E + E E E+E++ E E ++ + + + + D
Sbjct: 658 TDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPD 716
Score = 27.5 bits (61), Expect = 4.8
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + ++ E E+E+E++ EE ++E+E E ++ E + E
Sbjct: 633 KADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESES 677
Score = 27.5 bits (61), Expect = 5.1
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
E I +++ E E + E+ EE+++E++ + E +K
Sbjct: 666 EAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKA 703
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 34.8 bits (80), Expect = 0.024
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E++EE++EE+ +E + E+ +E+ EEEEK E E+
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVN 319
Score = 33.3 bits (76), Expect = 0.065
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E++EE++ E+ E+ + EE +EE EEEE+ + E+ E
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 33.3 bits (76), Expect = 0.073
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E+KEE++E++ E+ + EE +E+ EEEE+ ++ +V
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKV 318
Score = 32.9 bits (75), Expect = 0.084
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 123 ETWQ-MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E W + E +E++EE+ E + E+ +EE +EEEK E E+ E K+
Sbjct: 271 EGWDWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 32.5 bits (74), Expect = 0.11
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E KE++EEK+EEK EE + EE EE E++E+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEK 308
Score = 31.4 bits (71), Expect = 0.28
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E++ E++E++ EE K EE +EE E+EE+ E E+ I
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNI 320
Score = 30.6 bits (69), Expect = 0.58
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E++E+++E++ EE K E+ +EE ++EE+ + +K
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEK 317
Score = 28.3 bits (63), Expect = 2.7
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 149 KEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
KE +E+KEE+ EE+ E+ + +E +E+ EE++
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEE 307
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 34.6 bits (80), Expect = 0.024
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
T+E EE E + + EE +EE+++EE+ + EE + E+ R
Sbjct: 50 TEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKAR 99
Score = 32.7 bits (75), Expect = 0.11
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
E I+ + + EE++EEE +EE++ ++ +E ++ EE
Sbjct: 56 EEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEF 95
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 32.2 bits (74), Expect = 0.026
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
E EEEEE E+ E E+EE++EE+ +++ +
Sbjct: 46 AEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 29.9 bits (68), Expect = 0.18
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEE 164
+ E EEE E E+ E E+E++EE++++++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDD 72
Score = 28.7 bits (65), Expect = 0.46
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 146 EEEKEEEEEKEE-EKEEEEEKEEQKEEEE 173
+ E EEEEE E+ E E+EE++EE +++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDM 73
Score = 28.0 bits (63), Expect = 0.82
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEE 167
+ E EEEE+ E+ E E+E++EEE+ ++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDD 71
Score = 27.2 bits (61), Expect = 1.4
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEE 158
+EEEE E+ E+E++EEE+ +++
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDD 72
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 34.0 bits (78), Expect = 0.026
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++EE E++ +EE +E K+E KE +E++++K+ + E++I+
Sbjct: 2 SKEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIA 49
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 34.5 bits (80), Expect = 0.027
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E EEEE E +K +K+ + EK+ +KEE E+ ++ + A K
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKK 445
Score = 33.0 bits (76), Expect = 0.076
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 136 EEEEEEEENEEEEKEE-----EEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E EEEE EN E +++++ EK+ E+E+ E+ +++ E + D +
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 30.3 bits (69), Expect = 0.62
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E+ E+E+ E+ +++ E +K + + E +K +
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDP 458
Score = 30.3 bits (69), Expect = 0.68
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E+K E+EE E+ +++ + K+ + E +
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 29.5 bits (67), Expect = 0.99
Identities = 13/73 (17%), Positives = 31/73 (42%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
++++ KP + E E + +++ + E+K E++E E+ ++K E K
Sbjct: 385 LKLHDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
Query: 176 EEQQISRRVADKD 188
+ + D
Sbjct: 445 KAKGPDGETKKVD 457
Score = 28.4 bits (64), Expect = 2.2
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
++ E+EE E +K+ E ++ K + E +K + +
Sbjct: 423 KKAEKEEAEKAAAKKKAEAAAKKAKGPDG--ETKKVDPD 459
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 34.6 bits (79), Expect = 0.027
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
S+ QE E+EEE + KE +EE++E+K +EEE + +EEE+ + + + D
Sbjct: 256 SSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD 312
Score = 33.4 bits (76), Expect = 0.057
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEEE+ E+ + EE++EE+ K +E+E +EE KEE E EE+Q+ +K
Sbjct: 774 EKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 831
Score = 32.2 bits (73), Expect = 0.15
Identities = 16/51 (31%), Positives = 35/51 (68%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E I ++++E E+EEE + +E +E+E+EK+ +EE+ + +EE++ + +
Sbjct: 252 EEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSE 302
Score = 32.2 bits (73), Expect = 0.16
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++EEE + +E KEEE+EK+ ++EE + +++EE + + + R+V D++
Sbjct: 262 EKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 315
Score = 31.5 bits (71), Expect = 0.29
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+S ++E EEEE E+ K EEE++E+ K +EEE +EE +++ E
Sbjct: 769 ELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEE 821
Score = 31.5 bits (71), Expect = 0.29
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
QEE+ +EEE EE E +EE++ EK EEE E +EE ++E Q
Sbjct: 827 QEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 873
Score = 30.7 bits (69), Expect = 0.52
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E+EE E +E EKEEE + KE +EE++E+K +EE+ +
Sbjct: 250 EQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297
Score = 30.7 bits (69), Expect = 0.52
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ E + ++ E+ ++ E+E K+ EKE ++EKEE +E E++ +E +I R
Sbjct: 304 LKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKR 352
Score = 30.3 bits (68), Expect = 0.57
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ +++E ++ E+ ++EKEE EE E+E +E E K E +EEEE++ E+
Sbjct: 317 LKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKL 365
Score = 30.3 bits (68), Expect = 0.59
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
I T+ E + EE + +E + KE+ K+ E + +++ E ++E
Sbjct: 180 IEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDY 232
Score = 29.9 bits (67), Expect = 0.83
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E E+EEE +E +EEE++++ +EEE + ++EEE + E ++ RR D
Sbjct: 255 ESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 313
Score = 29.9 bits (67), Expect = 0.87
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 113 TVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
VL E + + ++ E +EEEE ++E + E + +EEK +E EKE +K E+
Sbjct: 270 QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEK 329
Query: 173 EQKEEQQIS 181
E K+E++
Sbjct: 330 ELKKEKEEI 338
Score = 29.9 bits (67), Expect = 0.88
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
++E+EE E E+E +E E K E +EEEEE+ E+ +E+ ++ E+++
Sbjct: 331 LKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEEL 376
Score = 29.9 bits (67), Expect = 0.91
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E + + +EN+EEEKE++ ++EE K +E+EE K E + E +++
Sbjct: 259 QELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 314
Score = 29.9 bits (67), Expect = 0.93
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E +E EE E ++E ++EE+ + +E KEEE++K+ Q+
Sbjct: 244 QELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQE 286
Score = 29.9 bits (67), Expect = 0.97
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EEE E EE KEE ++ KEEE E+++ K+E E KEE++
Sbjct: 854 EEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKE 896
Score = 29.9 bits (67), Expect = 0.97
Identities = 16/58 (27%), Positives = 37/58 (63%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
S + ++ E+E +E+E+ EE EKE ++ E + + E++EEE+ ++ Q+ ++ ++
Sbjct: 319 ESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEEL 376
Score = 29.9 bits (67), Expect = 0.97
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E + +E +E+ E E ++E EKEEE + KE ++EE+E+K +++ + +A +
Sbjct: 237 EERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKE 295
Score = 29.6 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ EE + E++ KE+EEE+E+ + ++EE+EE+K E KE++ +
Sbjct: 733 DKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTE 785
Score = 29.6 bits (66), Expect = 1.2
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ ++ EE E + + +E + +E + KE+ K+ E + ++
Sbjct: 173 KERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE 224
Score = 29.6 bits (66), Expect = 1.3
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ +EEE EEE KEE E EEE+ E++E+ KEEE ++ ++
Sbjct: 794 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK 844
Score = 29.2 bits (65), Expect = 1.6
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+E E ++E E+EE+ + +E KEEE+EK+ Q+EE + +++
Sbjct: 252 EEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEE 298
Score = 28.8 bits (64), Expect = 1.9
Identities = 11/55 (20%), Positives = 27/55 (49%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E I + +E + +E + +E+ K+ E + +++ E E+E + K ++
Sbjct: 188 ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDL 242
Score = 28.8 bits (64), Expect = 2.2
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
I+ + E++ + +EEE+E+ K+EE+EEE+ + KE+E +EE++
Sbjct: 735 INEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKT 784
Score = 28.8 bits (64), Expect = 2.3
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
EE E+E + E ++E EEE+EE+ E+ +EK EQ EEE +++ S R
Sbjct: 339 EELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESER 386
Score = 28.4 bits (63), Expect = 2.8
Identities = 20/105 (19%), Positives = 43/105 (40%)
Query: 83 LKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEE 142
LK K+ + +L + L + + Q + E ++E
Sbjct: 201 LKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 260
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+EEE + KE ++EE+E+K +++E + +E++ + K
Sbjct: 261 LEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK 305
Score = 28.4 bits (63), Expect = 2.8
Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 115 LVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
L + + E + ++ ++EE+ E E++ ++ EKE +KE+EE +E +KE +E
Sbjct: 289 LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKEL 348
Query: 175 KEEQQ 179
+ +++
Sbjct: 349 EIKRE 353
Score = 28.4 bits (63), Expect = 2.8
Identities = 13/60 (21%), Positives = 36/60 (60%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ +EEE+E++ +EEE + ++EEE + E K E+++ +++++ ++ + + +
Sbjct: 269 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLE 328
Score = 28.4 bits (63), Expect = 2.9
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++ +E E+E ++ EKE ++EKEE +E E+E +E + + E +EE+
Sbjct: 315 EKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEE 358
Score = 28.4 bits (63), Expect = 2.9
Identities = 9/55 (16%), Positives = 25/55 (45%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+++E ++ EE E E + E+ + +E + +++ ++ E Q+
Sbjct: 163 AAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLK 217
Score = 28.4 bits (63), Expect = 3.2
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ + EEE+ E EE+ KEEE E+ + +EE+K E+ EEE + ++
Sbjct: 812 KEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT 865
Score = 28.0 bits (62), Expect = 3.4
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
QE +++ E + +++ +EKEEE+E+ K+E++EEE+ + + +++
Sbjct: 725 ADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEE 782
Score = 28.0 bits (62), Expect = 3.9
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++EE+ +E+E+E K+ E+E ++EKEE EE E++ +E E K E +
Sbjct: 309 RKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQ 361
Score = 28.0 bits (62), Expect = 4.0
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + +EE N E E++EE+ ++E ++++ EEE+KE +
Sbjct: 960 EERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLR 1010
Score = 27.6 bits (61), Expect = 4.7
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 113 TVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+ K E+ + E+E+EE+ EEEE+ + ++E E
Sbjct: 925 AEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEF 984
Query: 173 EQKEEQQ 179
E+KEE+
Sbjct: 985 EEKEERY 991
Score = 27.6 bits (61), Expect = 5.3
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ +EEEEE + KEE E E++E++ +++ +++++
Sbjct: 952 EEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERL 1001
Score = 27.2 bits (60), Expect = 5.8
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE E E + +E + ++ + KE+ ++ E + +E+ E ++ + D
Sbjct: 181 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDY 232
Score = 27.2 bits (60), Expect = 5.8
Identities = 12/62 (19%), Positives = 34/62 (54%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++ E + ++E+ +++E ++ +E E E + EE K ++ + +EQ ++ ++
Sbjct: 158 EIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLK 217
Query: 186 DK 187
+K
Sbjct: 218 EK 219
Score = 27.2 bits (60), Expect = 6.3
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E ++ +E+ E+ EEE +++ + E + +E++ E + +EE++
Sbjct: 354 AEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAK 409
Score = 27.2 bits (60), Expect = 6.4
Identities = 8/49 (16%), Positives = 22/49 (44%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E + E + +E + +++ +K E + ++K E E++ +
Sbjct: 185 NLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYL 233
Score = 26.9 bits (59), Expect = 7.6
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E I +E +EEE E++ +EEE + ++EEE + E K E + ++++
Sbjct: 265 EEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK 316
Score = 26.9 bits (59), Expect = 8.6
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E + E EE EEE+ E+ +EK E+ EEE +++ E E
Sbjct: 348 LEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAA 391
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 32.4 bits (74), Expect = 0.028
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
H + +++EE+ E E +EK E+ K ++++ K+E K
Sbjct: 28 HQRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKS 68
Score = 26.3 bits (58), Expect = 4.0
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
++EEK E E +E+ E+ + K+++ ++E + +
Sbjct: 34 KKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKSL 69
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 32.9 bits (75), Expect = 0.029
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEE 164
E + EEKEEE++KEEEKEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 32.1 bits (73), Expect = 0.047
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEE 161
EE+ E +EEEK++EEEKEEE+EE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.1 bits (73), Expect = 0.054
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEE 171
+E+ EEKEEEK++EEEKEE++EE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 31.7 bits (72), Expect = 0.060
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKE 160
EE+ EE EEE+K+EEE++EEE+E
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 31.7 bits (72), Expect = 0.066
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQ 174
EEK EEKEEE++KEE+KEEEE+
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 31.3 bits (71), Expect = 0.090
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEE 164
EE EE++EE++++EE++EEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.9 bits (70), Expect = 0.12
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKE 166
E+ E++EEE+K+EE++EEEE+E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.9 bits (70), Expect = 0.13
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEE 163
EE+ EE+E+E+++E+E+E+EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.2 bits (68), Expect = 0.23
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQ 174
EE+ EE++EE++++EE++EEEE+
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.4 bits (66), Expect = 0.39
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEE 162
EE+ E+EE++++EE++EE+EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.4 bits (66), Expect = 0.39
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 153 EEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EEK EE+E+E++KEEE+++EE++
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 29.4 bits (66), Expect = 0.43
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEE 167
EE+ +E+EEEK++E+E+EEE+EE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.0 bits (65), Expect = 0.62
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEE 172
EE+ E++EE++++EE++E++EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.0 bits (65), Expect = 0.67
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E++ E++EEE+K+E+++EEE++E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.6 bits (64), Expect = 0.72
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 134 TQEEEEEEEENEEEEKEEEEE 154
+ EE+EEE+ +EEEKEEEEE
Sbjct: 76 EKAEEKEEEKKKEEEKEEEEE 96
Score = 28.6 bits (64), Expect = 0.85
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEE 173
EE+ +E+E+E+++E+E+++EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.1 bits (60), Expect = 2.9
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E+ +E+EEEK++++E+EE++EE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 25.9 bits (57), Expect = 7.9
Identities = 12/24 (50%), Positives = 21/24 (87%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEE 157
+E+ EE+EE +++E+E+EEE+EE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
>gnl|CDD|227780 COG5493, COG5493, Uncharacterized conserved protein containing a
coiled-coil domain [Function unknown].
Length = 231
Score = 34.1 bits (78), Expect = 0.029
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 108 LVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
L P +L EV +K WQ ++ Q+ EE +E E+ +KE +EK E ++++ KE+
Sbjct: 22 LTQRPEILYEVLAKLTPWQ---QLATKQDVEELRKETEQRQKELADEKLEVRKQKATKED 78
Query: 168 QKEEEEQKEEQ 178
K + +EE+
Sbjct: 79 LKLLQRFQEEE 89
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 34.6 bits (79), Expect = 0.030
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 133 NTQEEEEEEEEN----EEEEKEEEEEKEEEKEEEEEKEEQ----KEEEEQKEEQQ 179
NT +E+ ++++ E++EK E+ EE +E EE E EE EQ E +
Sbjct: 4041 NTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPE 4095
Score = 33.8 bits (77), Expect = 0.046
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E++E+ NE+ +E +E EE E+ + +E+ E+ E E+Q I
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAI 4099
Score = 33.4 bits (76), Expect = 0.061
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
N ++ E E+++ E+ E KE++ + E K+ +E+++E+++S V D
Sbjct: 3912 NEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDD 3967
Score = 33.4 bits (76), Expect = 0.067
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E N+ E Q + +++E+ E+ EE +E EE E+ + +E+ EQ E E
Sbjct: 4039 ENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPE 4095
Score = 33.4 bits (76), Expect = 0.070
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 135 QEEEEEEEENEEEEKEEEEE-----KEEEKEEEEEKEEQKEEEEQKEEQ 178
Q+E+ EE N +E ++++ +++EK E+ EE +E E+ E
Sbjct: 4032 QDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTED 4080
Score = 33.0 bits (75), Expect = 0.10
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E + + E + E + +E++ + E+++ +E+E EEE + ++E Q +
Sbjct: 3913 EEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPD 3972
Query: 177 EQQ 179
Q+
Sbjct: 3973 IQE 3975
Score = 31.9 bits (72), Expect = 0.24
Identities = 9/47 (19%), Positives = 28/47 (59%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ E+ E++ KE++ + E+K+ +E+++E++ ++ + +I
Sbjct: 3923 SNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEI 3969
Score = 30.7 bits (69), Expect = 0.50
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 129 EHISNTQEEEE--EEEENEEEEKEEEEEKEEEKEEEEEK----------EEQKEEEEQKE 176
E I+NT E++ EE NEE+ + + E E E E E + + ++E
Sbjct: 3825 EDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEE 3884
Query: 177 EQQISRRVAD 186
Q + V D
Sbjct: 3885 NQDLDEEVND 3894
Score = 30.7 bits (69), Expect = 0.56
Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENE---EEEKEEEEEKEEEKEEEEE-----KEEQ 168
+V+ + M ++ +EE + E++E +E+ EE +E ++++ ++++
Sbjct: 4001 DVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDE 4060
Query: 169 KEEEEQKEEQQISRRVADKD 188
K E+ EE + +D
Sbjct: 4061 KMNEDGFEENVQENEESTED 4080
Score = 30.4 bits (68), Expect = 0.65
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E + E + ++E + ++++ E+ + E E ++E + EK+E ++E+ EE
Sbjct: 3985 EDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEEN 4040
Score = 30.0 bits (67), Expect = 0.80
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 133 NTQEEEEEEEEN--EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
N QE EE E+ +EE E+ E E++ + K + K E +
Sbjct: 4070 NVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADE 4118
Score = 29.6 bits (66), Expect = 1.0
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 132 SNTQEEEEEEEE-----NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
S+++EE ++ +E E+ E+ +E EE+ E +++ EQ S V+
Sbjct: 3879 SDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSK 3938
Query: 187 KD 188
+D
Sbjct: 3939 ED 3940
Score = 28.8 bits (64), Expect = 2.3
Identities = 9/47 (19%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEE---EKEEQKEEEEQKEE 177
+ +E++ E+K+ +E+++EE+ ++ + E Q + +E +
Sbjct: 3933 SDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979
Score = 28.4 bits (63), Expect = 2.5
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEE-KEEEEEKEEQKEEE 172
E + E+++ +E+ +EEE ++ ++E + + +E Q E
Sbjct: 3939 EDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPE 3983
Score = 28.4 bits (63), Expect = 2.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E+ EEN +E +E E+ + EE E+ E +++ +
Sbjct: 4061 KMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPK 4104
Score = 28.4 bits (63), Expect = 3.0
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++E+E+EEE ++ ++E + + +E + + E+ + E+ ++ + D
Sbjct: 3950 RQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVS 4003
Score = 28.0 bits (62), Expect = 3.5
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
PE ++ E + ++ + E+ + E E +EE + EK+E + E+ EE +E
Sbjct: 3990 PEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDI 4047
Score = 28.0 bits (62), Expect = 3.9
Identities = 11/50 (22%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 132 SNTQEEEEEEEENE--EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+N + +E++N+ E++ +E+E EEE ++ +++ + + Q+ Q
Sbjct: 3930 NNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979
Score = 27.3 bits (60), Expect = 7.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E+E + ++ E+ + E E +EE + +K+E Q E+ D+D
Sbjct: 3996 DEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDED 4046
Score = 26.9 bits (59), Expect = 8.7
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E+++ +E+E EEE + ++E + + Q+ + E +
Sbjct: 3946 EDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE 3985
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 33.8 bits (78), Expect = 0.031
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E E + E E E+E +E++KEEE+ E Q+ ++ +Q I + A++
Sbjct: 207 EAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAER 256
Score = 33.4 bits (77), Expect = 0.049
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
KE+ E E K E E E++ E+QKEE+Q
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQ 232
Score = 32.3 bits (74), Expect = 0.11
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ E I T + +E+ E E+ + E E E+E EK QKEEE+ E Q+ S
Sbjct: 188 VEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREK--QKEEEQMMEAQERS 240
Score = 32.3 bits (74), Expect = 0.12
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
++ +E+ E K E E E+E E++KEE++ E Q+ Q
Sbjct: 195 TDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQE 243
Score = 29.6 bits (67), Expect = 0.95
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EH+ E+ E E E E+E E + +++EE KE K E E +++
Sbjct: 240 SYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKE 292
Score = 28.0 bits (63), Expect = 3.1
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ E E+E E++KEEE+ E ++ +E +Q E+ + E +++
Sbjct: 213 AEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLA 261
Score = 27.6 bits (62), Expect = 3.6
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
T +E+ E E + E E E+E +E+++E+E+ E +E+ ++ +
Sbjct: 200 TAKEKAIEAERAKAE-AAEAEQELLREKQKEEEQMMEAQERSYQEHV 245
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 34.2 bits (78), Expect = 0.034
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
++ + E+ E E EE E EEE E+ E++ + + +E +
Sbjct: 354 DSSSVPLEKQFDDILYFEKMEIENRNPEESEH-EEEVEDYEDENDHSKRICDDDELENHF 412
Query: 183 RVADK 187
R AD+
Sbjct: 413 RAADE 417
Score = 31.9 bits (72), Expect = 0.22
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
++I ++ E++ ++ E+ E + EE E +EE ++ E++
Sbjct: 350 DYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 31.1 bits (70), Expect = 0.34
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ E + ++ E+ E E EE E ++E E+ ++E S+R+ D D
Sbjct: 354 DSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDD 406
Score = 29.2 bits (65), Expect = 1.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
EE E E E E+ E+E + + +++E E ++K
Sbjct: 379 NPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEK 418
Score = 28.8 bits (64), Expect = 1.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E + EE E EEE E+ E E + K ++E E + +E+
Sbjct: 374 EIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNS 420
Score = 28.8 bits (64), Expect = 2.1
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 129 EHISNTQ-EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ + E EE EEE E+ E++ + + + +E + +E+ V +
Sbjct: 368 LYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVVGFR 427
Query: 188 D 188
+
Sbjct: 428 N 428
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 33.0 bits (74), Expect = 0.036
Identities = 26/43 (60%), Positives = 28/43 (65%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E EEEEE EEE EEE E EEE EEE E EE EEE + E +
Sbjct: 63 EPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPE 105
Score = 32.2 bits (72), Expect = 0.064
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+T + ++E EEEE E EEE EEE E EEE EE+ E EE EE+
Sbjct: 54 DTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEE 99
Score = 31.5 bits (70), Expect = 0.15
Identities = 24/44 (54%), Positives = 28/44 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+EEE E EE EEE E EEE EEE E EE EE+ E E + E +
Sbjct: 66 EEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPE 109
Score = 30.3 bits (67), Expect = 0.31
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++G +N + ++E EE EE E EEE E+E E EEE E+E + EE ++E +
Sbjct: 49 KVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPE 101
Score = 29.9 bits (66), Expect = 0.45
Identities = 23/43 (53%), Positives = 26/43 (60%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EEE EEE EEE EEE E EE EEE E E + E E + E +
Sbjct: 73 EEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPE 115
Score = 29.5 bits (65), Expect = 0.70
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EEE E EE EEE E EE EEE E E E E + E E + E +
Sbjct: 75 EGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119
Score = 28.0 bits (61), Expect = 2.1
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++E EEEE E E+E EEE E E+E EEE E ++ EE+ E +
Sbjct: 61 DDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPE 103
Score = 27.6 bits (60), Expect = 2.7
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E E EEE EE E EEE E+E E EE E+E + E E + E +
Sbjct: 68 EEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Score = 26.8 bits (58), Expect = 5.3
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
EEE EEE EE EEE E E E E E E E + E E +
Sbjct: 83 EEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPE 121
Score = 26.1 bits (56), Expect = 9.1
Identities = 19/37 (51%), Positives = 20/37 (54%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
EEE E EE EEE E E E E E E E E E + E
Sbjct: 85 EGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPE 121
Score = 26.1 bits (56), Expect = 9.3
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEE-EKEEEKEEEEEKEEQKEEEEQKEE 177
GE + ++ + ++E +EEEE E EEE EEE E EE+ EEE + EE
Sbjct: 44 GEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEE 94
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 33.9 bits (78), Expect = 0.038
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E+ K E ++ E + EE EEE E +EE E EE EE EE E+ EQ + ++E
Sbjct: 425 ELLKKLEEAELKE-LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
Query: 177 EQQISRRVA 185
Q+ R+
Sbjct: 484 LAQLQARLD 492
Score = 32.7 bits (75), Expect = 0.097
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ +S E E E E EE EE EE+ E E E E+ E + E+ ++E + + +
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806
Query: 186 DK 187
+
Sbjct: 807 EL 808
Score = 32.3 bits (74), Expect = 0.14
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E EEE E E +E EEK EE E + E++ EE QKE ++ ++ +
Sbjct: 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301
Score = 32.0 bits (73), Expect = 0.18
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E EE E EE+ +E +EE E + E EE E + EE E + E+
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
Score = 31.2 bits (71), Expect = 0.39
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E E E E E E EE E + EE EE+ E K + + + ++ +
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402
Score = 30.8 bits (70), Expect = 0.39
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E + EE E + + EE E EEK EE +EE E E + EE + E +++ R+ + +
Sbjct: 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
Score = 30.0 bits (68), Expect = 0.76
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
EE+ E +EE E E + EE E E E+ E + EE +++ + + +VA
Sbjct: 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
Score = 29.6 bits (67), Expect = 1.0
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++ EE E + EE E + +E EE E EE+ EE KEE E E +
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
Score = 29.6 bits (67), Expect = 1.2
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+E+ EE +E E + E EE E E EE E + E+ EE+
Sbjct: 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
Score = 29.6 bits (67), Expect = 1.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
++ E I + E EE EE EE + E E E+ EE E ++ +++
Sbjct: 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
Score = 29.3 bits (66), Expect = 1.3
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE--------EEQKEEQQ 179
+E EE EE +EE KE EEE EE E +E EE+ EE EE+ EE Q
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287
Score = 29.3 bits (66), Expect = 1.4
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
++ + + + +E E E +E+ EE +EE E E + E+ E E ++ E ++
Sbjct: 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
Score = 28.9 bits (65), Expect = 1.9
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E E + +E EE E EE+ EE KEE E E + EE E + E+ SR ++
Sbjct: 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
Score = 28.9 bits (65), Expect = 2.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ +E + + E + E EE EE EE EE+ + E E ++ E QI
Sbjct: 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
Score = 28.9 bits (65), Expect = 2.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E E E EE + ++ E E E E+ E++ EE ++E + + +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
Score = 28.1 bits (63), Expect = 3.0
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E ++N + + EE E EE + + +E EE E EEK E+ +EE + E ++ A+
Sbjct: 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
Score = 27.7 bits (62), Expect = 4.1
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENE-EEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
EV E E E EE E EE +EE E E E EE E + EQ +EE +
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
Query: 176 EEQQIS 181
+ +
Sbjct: 801 LREALD 806
Score = 27.7 bits (62), Expect = 4.1
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ S +E EE E E + E E EE +E+ + E + E E + + R
Sbjct: 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
Score = 27.7 bits (62), Expect = 4.4
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E + + +E E E EE EE+ EE EEE + E + EE + + +Q+ +
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
Score = 27.3 bits (61), Expect = 5.4
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
++ + E E+ EE + +E E E E EE EE+ E+ EEE + E +I
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
Score = 27.3 bits (61), Expect = 6.6
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + EE E E EEK EE E + EEE +E QKE E
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS 298
Score = 27.3 bits (61), Expect = 6.7
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ E EE E EE + EE EE+ E K Q E + +I R
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
Score = 26.9 bits (60), Expect = 8.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E E E+ EE + +E E + E EE EE+ EE E++ + + +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
Score = 26.9 bits (60), Expect = 9.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE EEE E E EE E + E+ +EE + + +E + E ++ A+
Sbjct: 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 33.7 bits (77), Expect = 0.039
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
PE I T+ E+ E + ++E ++ + E+E E +++ + + +
Sbjct: 323 PELHAENAEIKKTRTAEKNEAKARKKE-IAQKRRAAEREINREARQERAAAMARARARRA 381
Query: 182 RRVADK 187
A K
Sbjct: 382 AVKAKK 387
Score = 32.9 bits (75), Expect = 0.073
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 125 WQMGE-HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE-QKEEQQISR 182
W+ E H N + ++ E E + ++E ++ + E E + +E + +R
Sbjct: 320 WRAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARAR 379
Query: 183 RVADK 187
R A K
Sbjct: 380 RAAVK 384
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 32.2 bits (73), Expect = 0.039
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E EE EEN+EEE+EEEEE++E + E +E+ EEE + E
Sbjct: 48 QSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 30.2 bits (68), Expect = 0.20
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
EE EE +E EEEE+EEE+E E E ++E+ E++ E+ +
Sbjct: 57 AEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLED 97
Score = 28.7 bits (64), Expect = 0.62
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
+ S +EEEEEEE EE+E E E ++E+ EEE ++ +
Sbjct: 55 LEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLED 97
Score = 27.1 bits (60), Expect = 2.4
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
IS + ++ E E EE EEEEE+EEE++E E + +EE ++E + +
Sbjct: 46 ISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDL 95
Score = 26.4 bits (58), Expect = 4.8
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
G+ N + ++ EE +E +EE+EEE+EEE+E E + ++++ E++I
Sbjct: 40 GDEPYNISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIE 93
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 33.9 bits (78), Expect = 0.040
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 111 TPTVLVEVNSKPET-WQMGEHISNTQEEEEEEEENEEEEKEEEEEKE--EEKEEEEEKEE 167
T L + S + + + E + +EE E + EE E E E EE
Sbjct: 112 TAGSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEE 171
Query: 168 QKEEEEQKEEQQ 179
Q E+ E
Sbjct: 172 QLALMEKSYELA 183
Score = 26.6 bits (59), Expect = 9.2
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+E E E E E E EE+ E+ E K
Sbjct: 146 KELLREVEELESRLATEPSPAPELEEQLALMEKSYELAAK 185
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 33.5 bits (77), Expect = 0.042
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ EE E +EE E E+ E EE +E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
Score = 31.6 bits (72), Expect = 0.19
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+ EE+EE E E+ E EE EE E
Sbjct: 208 EEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 29.3 bits (66), Expect = 0.99
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
EE EE+E E E+ E EE EE
Sbjct: 207 PEEAEEKEEAAAETAGVEDAAAAAAEAEEGEE 238
Score = 28.1 bits (63), Expect = 2.3
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
EE+EE ++ E +E EE E E
Sbjct: 211 EEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNEWEN 249
Score = 27.3 bits (61), Expect = 4.6
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE +E+EE E E+ E EE +E
Sbjct: 207 PEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVA 241
Score = 26.9 bits (60), Expect = 6.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EE EEKEE E E+ + EE +
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGE 237
Score = 26.2 bits (58), Expect = 9.6
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ E EEKEE + E+ + EE E+
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAA 243
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 33.6 bits (77), Expect = 0.042
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
EEEE+EEEEE+EE E E EE E E
Sbjct: 403 EEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPE 434
Score = 33.6 bits (77), Expect = 0.053
Identities = 16/28 (57%), Positives = 16/28 (57%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEE 161
EEEEEEEE EEEE E E EE
Sbjct: 401 WAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 32.9 bits (75), Expect = 0.081
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
E EEE EEEE+EEEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 32.5 bits (74), Expect = 0.10
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E EEEE+EEE+EEEE E + EE ++
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEV 432
Score = 32.5 bits (74), Expect = 0.12
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
EEEEE EEEE+EE E E EE E E
Sbjct: 402 AEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPE 434
Score = 32.5 bits (74), Expect = 0.12
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
+EEEEEEEE EEE E E EE E E
Sbjct: 403 EEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPE 434
Score = 32.1 bits (73), Expect = 0.13
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E EEE+EEEEE+EEE E E E+ + E +
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMPM 437
Score = 27.5 bits (61), Expect = 4.7
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 139 EEEEENEEEEKEEEEEKEE---EKEEEEEKEEQKEEEEQKEE 177
EE+ +E +E +EK E+ EEE+EE++EEEE+ E
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAE 418
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 33.9 bits (77), Expect = 0.043
Identities = 21/51 (41%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEK---EEEEEKEEQKEEEEQKEEQQIS 181
TQ+EEEE+E+ EE E+ EE E EE+ +E+ EK+++KE + + +E +++
Sbjct: 105 TQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELA 155
Score = 30.0 bits (67), Expect = 0.78
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
I +EE ++E EE+E EE E+ EE E EE+ + E+ E+ +E++
Sbjct: 96 IVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKE 144
Score = 26.9 bits (59), Expect = 7.1
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
I+N + + E + E E + E+E ++EEE++E EE E+ EE ++ D D
Sbjct: 77 IANDKSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDD 134
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 32.4 bits (74), Expect = 0.043
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E+ E++ + EKE ++EKE E++ + KE KEE++ ++A K
Sbjct: 34 MEKRLEQQAIKAREKELKDEKEAERQRR--IQAIKERRAAKEEKERYEKMAAK 84
Score = 28.5 bits (64), Expect = 0.82
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 148 EKEEEEEKEEE--KEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EK E+ E++ K E+E +++KE E Q+ Q I R A K
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAK 72
Score = 26.2 bits (58), Expect = 5.8
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 111 TPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEE-EEKEEEKEEEEEKEEQK 169
T SK +W+ Q+ + E+ ++EKE E + + + +E +E+K
Sbjct: 16 TEKKAFRPKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEK 75
Query: 170 EEEEQKEEQQISRRVA 185
E E+ + +++V
Sbjct: 76 ERYEKMAAKMHAKKVE 91
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 33.9 bits (78), Expect = 0.043
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
+ E ++E+ + E +E +E E E+E +EE E+ ++ + RR
Sbjct: 380 QRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRK 424
Score = 32.0 bits (73), Expect = 0.18
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+EEEE E+EEE K E+ + K E+ ++E++EEE +E
Sbjct: 453 SDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEEN 494
Score = 32.0 bits (73), Expect = 0.20
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
N +E++E +E EE E EEE + E+ + ++ E+ ++EE++EE
Sbjct: 445 NEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEE 493
Score = 31.6 bits (72), Expect = 0.24
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E E+EEE E+ + ++ E+ ++EEE+EE EE + + A K
Sbjct: 453 SDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQ 510
Score = 30.0 bits (68), Expect = 0.69
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ + +E++E + EEE ++EEE K E+ + K +K ++E++EE+
Sbjct: 443 NKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELD 491
Score = 30.0 bits (68), Expect = 0.75
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E N +P +G E E+E E+++ +KE + E +E+KE +EE EE ++EEE K
Sbjct: 410 EENEEPSKKNVGRRKF-GPENGEKEAESKKLKKENKNEFKEKKESDEE-EELEDEEEAKV 467
Query: 177 EQQISRRVAD 186
E+ ++ +
Sbjct: 468 EKVANKLLKR 477
Score = 30.0 bits (68), Expect = 0.77
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
++ ++E + +E+KE +EE+E E EEE + E+ + ++ E+
Sbjct: 437 KKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQ 482
Score = 29.6 bits (67), Expect = 0.93
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE--QKEEQQISRRVAD 186
+ S+ +EE E+EEE + E+ + K EK ++EE+EE+ +EE K + +
Sbjct: 450 KKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKK 509
Query: 187 KD 188
+D
Sbjct: 510 QD 511
Score = 28.9 bits (65), Expect = 1.8
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+ GE + E + EE+E+E+ + EEE E++ E++++ E
Sbjct: 309 RQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENP 351
Score = 28.5 bits (64), Expect = 2.7
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++ ++E +NE +EK+E +E+EE ++EEE K E+ + K ++
Sbjct: 436 SKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQ 482
Score = 27.7 bits (62), Expect = 3.9
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEK-----EEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E E EEE++EEE EE +K + E E++ E K+ +++ + + ++ +D++
Sbjct: 399 RELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEE 456
Score = 27.3 bits (61), Expect = 5.0
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
G+ +S E+E+ + E E+E+ +E+++ E +K + +E E EE
Sbjct: 318 IEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEEN 370
Score = 27.3 bits (61), Expect = 5.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
++EE + E EE + E E +EE EEE E+ +K +K
Sbjct: 384 ARKKEENDAE--IEELRRELEGEEESDEEENEEPSKKNVGRRK 424
Score = 26.9 bits (60), Expect = 8.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+EE +EEE E +K K + E+E E +K ++E K E
Sbjct: 404 EEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNE 446
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 33.7 bits (77), Expect = 0.043
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ +E ++++EEE + E+E K EE E++ +E++E+ + ++ Q + D
Sbjct: 160 KKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSS 215
Score = 26.7 bits (59), Expect = 8.4
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+EEE EE E+ E E ++ + E E + + ++
Sbjct: 216 DEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESS 257
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 32.7 bits (75), Expect = 0.043
Identities = 15/48 (31%), Positives = 33/48 (68%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E +E+ + E E++E ++++EE+K ++EEK +K + QK++Q+ +
Sbjct: 52 LELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKK 99
Score = 27.7 bits (62), Expect = 2.6
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E E+ E +++ +KE E+E+ +QK EE+++++++ + +
Sbjct: 46 RREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAK 85
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 33.6 bits (77), Expect = 0.044
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E+EE EE E EKEEEE++ ++EE+E+Q + + K+
Sbjct: 143 EQEELEEALEFEKEEEEQRRLL-LQKEEEEQQMNKRKNKQA 182
Score = 29.8 bits (67), Expect = 0.82
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + QEE EE E E+EE+E+ +++EEE++ ++K ++ +E
Sbjct: 138 EKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDE 186
Score = 27.1 bits (60), Expect = 5.6
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE-EKEEQKEEEEQKEEQQ 179
+ I Q+E ++ + +E+ E+E+ EE E E E+EEQ+ QKEE++
Sbjct: 120 KKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEE 171
>gnl|CDD|220690 pfam10321, 7TM_GPCR_Srt, Serpentine type 7TM GPCR chemoreceptor
Srt. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srt is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 313
Score = 33.7 bits (78), Expect = 0.044
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 16/82 (19%)
Query: 43 INGFDDGPQFPAY----------IRTPSMVLCSIILCIGVLGNIM-VPC--VILKSKDMR 89
N F P +PAY I +L + L G++ I+ +PC ILK K +
Sbjct: 8 TNSF---PLWPAYNCSENEWSETIGVKRPILGAYFLVSGIIILILYIPCLIAILKKKLRK 64
Query: 90 NSTNIFLMNLSIADLMVLLVCT 111
+ ++ L I D++ L + +
Sbjct: 65 HPCYKIMLFLGIFDILALSINS 86
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 33.8 bits (77), Expect = 0.044
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E N++ + E+ EE E + E + Q
Sbjct: 144 PGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQ 194
Score = 33.4 bits (76), Expect = 0.056
Identities = 11/48 (22%), Positives = 16/48 (33%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S Q+ + + E+ EE E E E + Q E Q
Sbjct: 158 SPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQ 205
Score = 31.9 bits (72), Expect = 0.18
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
N Q + +E+ +E E E + + + + Q
Sbjct: 160 NQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQS 206
Score = 31.9 bits (72), Expect = 0.20
Identities = 8/54 (14%), Positives = 15/54 (27%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
Q+ + E + E EE + E+E+ + E
Sbjct: 54 SGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSP 107
Score = 31.5 bits (71), Expect = 0.23
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
P + Q +E E + ++ ++ E E E + E E
Sbjct: 192 PPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
Score = 31.5 bits (71), Expect = 0.26
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+E E + ++ ++ + E+E E ++E
Sbjct: 209 DEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPF 247
Score = 31.5 bits (71), Expect = 0.26
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S T + +E E + ++ ++ + E+E E ++
Sbjct: 195 SETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPER 242
Score = 31.5 bits (71), Expect = 0.26
Identities = 5/43 (11%), Positives = 6/43 (13%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + E E E Q
Sbjct: 119 SPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161
Score = 31.1 bits (70), Expect = 0.28
Identities = 4/54 (7%), Positives = 9/54 (16%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ S + E E ++ + E
Sbjct: 120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHED 173
Score = 31.1 bits (70), Expect = 0.32
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
N +P ++ H ++ EE E E + + + + Q +E E Q
Sbjct: 160 NQQPSSFLQPSH----EDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQ 215
Score = 31.1 bits (70), Expect = 0.34
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++ + + E+ EE + E E Q E
Sbjct: 156 NPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSET 197
Score = 30.3 bits (68), Expect = 0.51
Identities = 5/49 (10%), Positives = 7/49 (14%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
S + EN E E +
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES 154
Score = 29.9 bits (67), Expect = 0.77
Identities = 5/44 (11%), Positives = 7/44 (15%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE + E E E +
Sbjct: 111 AEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES 154
Score = 29.6 bits (66), Expect = 0.97
Identities = 5/42 (11%), Positives = 5/42 (11%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E EE E E
Sbjct: 95 SGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSP 136
Score = 29.6 bits (66), Expect = 1.1
Identities = 4/42 (9%), Positives = 4/42 (9%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E E E E
Sbjct: 116 SGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNP 157
Score = 29.6 bits (66), Expect = 1.1
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
S+ E E+ ++ + E+ EE + + E
Sbjct: 138 PSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPD 188
Score = 29.2 bits (65), Expect = 1.4
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
T+ + E EE+ EKEE + E E+
Sbjct: 69 TESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEE 113
Score = 28.8 bits (64), Expect = 1.6
Identities = 10/62 (16%), Positives = 22/62 (35%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
P Q S+ + +E E + ++ ++ E E++ E E++
Sbjct: 190 PGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
Query: 182 RR 183
R
Sbjct: 250 HR 251
Score = 28.8 bits (64), Expect = 1.8
Identities = 4/42 (9%), Positives = 5/42 (11%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E EE E +
Sbjct: 97 SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPP 138
Score = 28.4 bits (63), Expect = 2.1
Identities = 4/52 (7%), Positives = 8/52 (15%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S + EE E + + +
Sbjct: 102 SPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPE 153
Score = 28.4 bits (63), Expect = 2.3
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E+ + E + + EE + EKEE + E
Sbjct: 63 EQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGS 102
Score = 28.4 bits (63), Expect = 2.6
Identities = 5/50 (10%), Positives = 6/50 (12%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E E EE + E
Sbjct: 85 EERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASH 134
Score = 28.4 bits (63), Expect = 2.7
Identities = 7/47 (14%), Positives = 8/47 (17%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
S + EE E E E E
Sbjct: 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES 154
Score = 28.0 bits (62), Expect = 3.4
Identities = 9/49 (18%), Positives = 13/49 (26%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
H + E EE E++E + E EE
Sbjct: 65 GHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEE 113
Score = 27.6 bits (61), Expect = 4.7
Identities = 8/53 (15%), Positives = 15/53 (28%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
S P + Q ++ + ++ E E E + E E
Sbjct: 197 TPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
Score = 27.6 bits (61), Expect = 4.8
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E+ + + E EE E++E + E
Sbjct: 56 PQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSP 103
Score = 27.2 bits (60), Expect = 5.1
Identities = 10/57 (17%), Positives = 18/57 (31%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
P G + E+ + E++ E EE E+E+ + E
Sbjct: 48 PPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPT 104
Score = 26.9 bits (59), Expect = 6.9
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 134 TQEEEEEEEENEEEEK--EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
T E E + + E + E E + ++ QQ
Sbjct: 182 TSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQ 229
Score = 26.9 bits (59), Expect = 7.5
Identities = 8/64 (12%), Positives = 16/64 (25%)
Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
V + + + E+ S E+EE + E +E
Sbjct: 61 VAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSP 120
Query: 174 QKEE 177
+
Sbjct: 121 ENTS 124
Score = 26.9 bits (59), Expect = 8.6
Identities = 4/41 (9%), Positives = 4/41 (9%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
EE E E
Sbjct: 101 GSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPP 141
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 33.9 bits (78), Expect = 0.044
Identities = 13/50 (26%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 123 ETWQMGEHIS---NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
+ + + I N ++ E + ++ EE+ +++++KE++KEEE ++EE+
Sbjct: 716 DISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 32.0 bits (73), Expect = 0.19
Identities = 11/33 (33%), Positives = 25/33 (75%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E + + EE+ +++++KE++KEEE ++EE+
Sbjct: 732 DAEFKISDSVEEKTKKKKKKEKKKEEEYKREEK 764
Score = 30.5 bits (69), Expect = 0.64
Identities = 12/39 (30%), Positives = 27/39 (69%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++ E + + EE+ K+++K+E++++EE K EE+ + E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 30.1 bits (68), Expect = 0.76
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
+ EE+ ++++K+E++++EE K EE+ + E E
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 28.9 bits (65), Expect = 2.1
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
N ++ + + + EEK ++++K+E+K+EEE K E++ +A+
Sbjct: 729 NGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 27.4 bits (61), Expect = 5.5
Identities = 11/41 (26%), Positives = 28/41 (68%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++ E + + EEK ++K+++E+K+E++ + E+K +I+
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIA 770
Score = 27.4 bits (61), Expect = 6.2
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
+ EE+ ++++KE+++E+E ++EE+ E
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 27.0 bits (60), Expect = 8.4
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
IS++ EE+ ++++ +E++KEEE K EEK E E
Sbjct: 737 ISDSVEEKTKKKKKKEKKKEEEY-KREEKARIEIAE 771
Score = 26.6 bits (59), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+E E EE E E+E + E E E + K+EQ+ S
Sbjct: 243 KETSETEERVESEEETDVEIETASETKGTKQEQEGS 278
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 33.2 bits (76), Expect = 0.045
Identities = 20/98 (20%), Positives = 34/98 (34%)
Query: 87 DMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEE 146
+ + LS A + LL V + + + E EE + E
Sbjct: 1 RRSLWSTSLSLLLSGALVAALLFVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEP 60
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E EE+ + E E E K +E+ K E++ +
Sbjct: 61 EPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98
Score = 29.0 bits (65), Expect = 1.3
Identities = 8/49 (16%), Positives = 23/49 (46%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
Q + E E E + +++ + E++ +K + K + + K + ++
Sbjct: 63 PEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 28.6 bits (64), Expect = 1.7
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE+ + E E E + +++ + EK+ +K + + K + + +V +
Sbjct: 64 EEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQ 114
Score = 27.4 bits (61), Expect = 4.1
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ EE+ + E E E + KE+ + +++ K+ + + + +
Sbjct: 60 PEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPK 106
Score = 26.7 bits (59), Expect = 6.7
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
T+ E E + +++ + EK+ +K + + K + K + + K
Sbjct: 68 KPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKP 113
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 33.0 bits (76), Expect = 0.047
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 124 TWQMGEHISNTQEEEEEEEENE--EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ M + + Q + E E+E + EEEKEE E++ E E + E E++EEEE++ E++
Sbjct: 109 AFGMRKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKR 167
Score = 32.6 bits (75), Expect = 0.074
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK--EEQKEEEEQKEEQQI 180
E + E+E ++ E E+EE E+ + E K E EK EE+++ EE++ +I
Sbjct: 118 AEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEI 172
Score = 31.0 bits (71), Expect = 0.26
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ E+ + E E+E K+ EEEKEE ++ E E + E E++EE++
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQ 162
Score = 28.3 bits (64), Expect = 2.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 137 EEEEEEENEEEEKEEEEEK--EEEKEEEEEKEEQKEEEEQKEEQQI 180
EE E+ E E K E EK EEE++ EE++ + +K+ QQ+
Sbjct: 137 EELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQL 182
Score = 27.9 bits (63), Expect = 2.5
Identities = 10/45 (22%), Positives = 27/45 (60%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
++ + + E E+ EEEE++ EE++ ++ +K+ Q+ + + +
Sbjct: 143 VAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQLKSQLE 187
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 33.5 bits (77), Expect = 0.050
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEE--KEEEEEKEEQKEEEEQKEEQQISRRV 184
G ++ + +EEE E+E EEEE+ E E+ +K E+ E ++E ++ R +
Sbjct: 386 RGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKREL 445
Score = 28.5 bits (64), Expect = 2.2
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
+ EE + EE ++ EE E ++++++ EE + RR
Sbjct: 611 DSEELRRAIEEWKKRFEERERRQKEEDILRIIEEYRRERRR 651
Score = 28.1 bits (63), Expect = 3.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
EEE E + E EE + E EK E + E +E + + + +E + RR+
Sbjct: 434 LEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIER 485
Score = 28.1 bits (63), Expect = 3.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E EEEN E ++E EE K E ++ E E E + E K + R + +D
Sbjct: 432 ERLEEENSELKRELEELKREIEKLESELERFRREVRDKV--RKDREIRARD 480
Score = 26.6 bits (59), Expect = 8.7
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 137 EEEEEEENEEEEKEEEEEKE-EEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E E E E + +++E ++ E+ E++ EE++K +++ R++A
Sbjct: 456 ESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 32.3 bits (74), Expect = 0.053
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E E + +EE+K +E+E + + EE KE E +K++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 31.1 bits (71), Expect = 0.13
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
E + +EE++ +EEE K + +E +E + E+K+
Sbjct: 94 EAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 30.7 bits (70), Expect = 0.21
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+ +EE + +E+E + + EE KE E EK++
Sbjct: 95 AQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 30.3 bits (69), Expect = 0.27
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
+EE++ + EE +++ EE KE E+E+++
Sbjct: 98 ARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 30.3 bits (69), Expect = 0.27
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
E + + E++ EEE +++ E+ +E E+E++K
Sbjct: 94 EAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 29.6 bits (67), Expect = 0.46
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E E + ++E++ +EEE K + +E +E++ E++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKK 125
Score = 29.6 bits (67), Expect = 0.49
Identities = 7/33 (21%), Positives = 23/33 (69%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + +E+++ EEE +++ ++ +E ++E+++
Sbjct: 94 EAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 29.6 bits (67), Expect = 0.53
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+E E + +E+++ +E+E +++ EE KE ++E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 29.2 bits (66), Expect = 0.55
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E E + +EE+K +EEE + + EE +E+E +K++
Sbjct: 91 ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 28.4 bits (64), Expect = 1.1
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ +E +E E + EE++ EEE + + E+ +++E E++K
Sbjct: 80 SRVQPVLDEIDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 28.4 bits (64), Expect = 1.2
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+E E + ++EEK+ +EE+ +++ EE ++ E++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREK 124
Score = 26.9 bits (60), Expect = 3.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 152 EEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+E E ++ +EEK+ +EE +++ E+ R
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKER 120
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic region
found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 31.7 bits (72), Expect = 0.056
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE+ +EEE EEE+++EE + + + + + ++ ++ R +
Sbjct: 6 LEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRR 59
Score = 30.5 bits (69), Expect = 0.17
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+EEE EEEE++EE + + E + + ++ +K ++ RR D+D
Sbjct: 12 EEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRD 65
Score = 29.8 bits (67), Expect = 0.28
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+EEEE EE E++E+ + + + + ++ ++ RR +D
Sbjct: 9 DLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRD 63
Score = 27.8 bits (62), Expect = 1.5
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE+ +EEE+ EEEE +EE + E++ + R K
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDV-DRGRRSPRRRTRRRSRRRKR 53
Score = 25.5 bits (56), Expect = 7.8
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE+ +EEEE EEEE+ EE + + E ++ ++ ++ SRR
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSR 55
Score = 25.5 bits (56), Expect = 8.3
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEK----EEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E EEEE++ E K E + + +K +++ ++ R +D
Sbjct: 14 EESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRD 71
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 31.4 bits (72), Expect = 0.057
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 145 EEEEKEEEEEKEEEKEEEEE 164
EEE+KEEE+EEEE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEED 80
Score = 31.4 bits (72), Expect = 0.062
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 145 EEEEKEEEEEKEEEKEEEEE 164
EEE+++EEE+EEE++
Sbjct: 62 AAAAAEEEKKEEEEEEEEDD 81
Score = 29.5 bits (67), Expect = 0.31
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 146 EEEKEEEEEKEEEKEEEEEKE 166
EEEK+EE+EEEEE +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 29.1 bits (66), Expect = 0.35
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 136 EEEEEEEENEEEEKEEEEE 154
EEE+ EEEE+EEE++
Sbjct: 63 AAAAEEEKKEEEEEEEEDD 81
Score = 29.1 bits (66), Expect = 0.36
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 148 EKEEEEEKEEEKEEEEEKEE 167
EEEK+EEEE+EE
Sbjct: 59 AAAAAAAAEEEKKEEEEEEE 78
Score = 28.4 bits (64), Expect = 0.68
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 147 EEKEEEEEKEEEKEEEEEKEE 167
EE+++E+EEEEE+++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 28.4 bits (64), Expect = 0.81
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 140 EEEENEEEEKEEEEEKEEEKE 160
EEEK+EEEE+EEE +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 28.4 bits (64), Expect = 0.88
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 136 EEEEEEEENEEEEKEEEEE 154
EEE +EEE+EEEE+
Sbjct: 62 AAAAAEEEKKEEEEEEEED 80
Score = 28.0 bits (63), Expect = 0.95
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 139 EEEEENEEEEKEEEEEKEEE 158
EEE+KEEEEE+EE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEED 80
Score = 28.0 bits (63), Expect = 1.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 154 EKEEEKEEEEEKEEQKEEEE 173
EEE+++EE++EEE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEED 80
Score = 27.6 bits (62), Expect = 1.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 141 EEENEEEEKEEEEEKEEEKEE 161
EE+++EEE+EEE+++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 27.2 bits (61), Expect = 1.9
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEE 173
EE+++EEE+EE EE++
Sbjct: 61 AAAAAAEEEKKEEEEEE--EEDD 81
Score = 27.2 bits (61), Expect = 2.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 136 EEEEEEEENEEEEKEEEEEKE 156
EE ++EE+EEEEE +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 26.8 bits (60), Expect = 3.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 137 EEEEEEENEEEEKEEEEEKEE 157
E E++E+EEEEE+++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 26.8 bits (60), Expect = 3.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 138 EEEEEENEEEEKEEEEEKEEE 158
EE+++EEEEE+E++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 25.3 bits (56), Expect = 8.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 154 EKEEEKEEEEEKEEQKEEEE 173
EEEK+E++EEEE
Sbjct: 59 AAAAAAAAEEEKKEEEEEEE 78
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 32.0 bits (72), Expect = 0.057
Identities = 10/34 (29%), Positives = 27/34 (79%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
E EE+ +++ +E+E++++++EE ++E++ E+ E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 31.7 bits (71), Expect = 0.058
Identities = 10/34 (29%), Positives = 27/34 (79%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E EE+ + + +EEE+ ++E EE++++++ ++++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 31.7 bits (71), Expect = 0.065
Identities = 12/33 (36%), Positives = 26/33 (78%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKE 160
GE S++ +EEE++++E+EE ++E++ E++ E
Sbjct: 8 GEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 31.7 bits (71), Expect = 0.073
Identities = 9/32 (28%), Positives = 27/32 (84%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
EE+ + + +EEE+ ++E+E++++++++E+ +E
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.9 bits (69), Expect = 0.12
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
H +E+ + + + EE++ +E+EE ++E ++E++ E
Sbjct: 4 HFLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.5 bits (68), Expect = 0.20
Identities = 10/34 (29%), Positives = 26/34 (76%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E EE+ + + ++EE+++ E+E++++E+ +E +E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.1 bits (67), Expect = 0.21
Identities = 9/34 (26%), Positives = 27/34 (79%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
E EE+ + + +EE+++++E EE+ +E++++++ +
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.1 bits (67), Expect = 0.25
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E EE+ + +E+E++ +E+EE +++ ++E+ E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.1 bits (67), Expect = 0.25
Identities = 10/34 (29%), Positives = 27/34 (79%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E EE+++ + EEE++ +E++E+++E +++ ++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 29.7 bits (66), Expect = 0.35
Identities = 8/32 (25%), Positives = 25/32 (78%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EE+ + + ++EE+ ++E+E+++ ++++E +E
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 29.0 bits (64), Expect = 0.69
Identities = 8/35 (22%), Positives = 26/35 (74%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E E++ + + +EE+++++E EE +E++ +++ ++
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEV 41
Score = 28.6 bits (63), Expect = 0.95
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
E E + + +EEE +++++EE++ E+ E++++
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 28.2 bits (62), Expect = 0.97
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E E+ + + +EE++++ E+EE+ +E +E++ +
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 27.4 bits (60), Expect = 1.9
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E EE + + EEE +++E++E+ E++++ +++
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 33.2 bits (76), Expect = 0.064
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
T+ E E + E E EEE +E ++ + EE
Sbjct: 264 TRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEET 303
Score = 30.5 bits (69), Expect = 0.47
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E + E E EEE +E + + + E+ ++
Sbjct: 268 EPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQ 305
Score = 29.0 bits (65), Expect = 1.5
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + E E EEE +E + + E+
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEET 303
Score = 29.0 bits (65), Expect = 1.6
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEE---EKEEQKEEEEQKEEQQISRR 183
+ E EEE +E ++ + ++ +E ++ EE + E + Q +R
Sbjct: 281 EPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNILATLQTVQR 332
Score = 28.6 bits (64), Expect = 2.1
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E E + E + EEE E + + + EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEET 303
Score = 28.2 bits (63), Expect = 2.9
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+ E + EEE E ++ + ++ EE + E+
Sbjct: 271 PQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 33.5 bits (76), Expect = 0.065
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ I + + E++ ++ E EE+E EEEKEEEE KE + ++K+ +
Sbjct: 751 DEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKN 801
Score = 31.6 bits (71), Expect = 0.25
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
G S+ +E +E + + E++ + E EE+E EE+KEEEE KE
Sbjct: 740 GSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKE 788
Score = 30.0 bits (67), Expect = 0.83
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ E + + E +E+E EEE++EE+ +E K ++ R+ K
Sbjct: 757 FDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKNMLKS 805
Score = 26.9 bits (59), Expect = 8.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+QE ++EE +E + E+ + E +E++ EEE++EE+
Sbjct: 741 SQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENK 787
Score = 26.9 bits (59), Expect = 8.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S +E ++EE +E + E++ E EE + EE+KEE++
Sbjct: 738 SEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEE 785
Score = 26.5 bits (58), Expect = 9.4
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
QEE +E + +++ + E EE+E E+++EEE+ +E R
Sbjct: 745 DQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKR 793
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 32.8 bits (75), Expect = 0.068
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 140 EEEENEEEEKEEEEEKEEEKE-EEEEKEEQKEEEEQKEE 177
+++ EEEE+ E +E E E+ + +QK +EEQK E
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAE 157
Score = 32.0 bits (73), Expect = 0.12
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEE-EKEEEEEKEEQKEEEEQ 174
Q+++EEEE E +E E E + +++ KEEQK E E+
Sbjct: 120 QKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 27.7 bits (62), Expect = 3.1
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++++EE E E E E E+ +++ +EE++ E ++ R A
Sbjct: 119 AQKQKEEEERRV-ERRRELGLEDPEQLRLKQKAKEEQKAESEETRHRAA 166
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 32.2 bits (73), Expect = 0.070
Identities = 10/49 (20%), Positives = 34/49 (69%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E++E ++ + E++E+E K +++ E+ E ++K++E ++ ++++++
Sbjct: 75 DEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKK 123
Score = 29.1 bits (65), Expect = 0.83
Identities = 13/49 (26%), Positives = 32/49 (65%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E++E ++ K E+ EKE K ++E ++ + +++QKE ++ +++ K
Sbjct: 75 DEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKK 123
Score = 27.9 bits (62), Expect = 2.4
Identities = 9/48 (18%), Positives = 32/48 (66%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++ +E++E ++ ++E+ E++ ++++E EK E ++++++ E+
Sbjct: 68 FEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERER 115
Score = 27.5 bits (61), Expect = 2.6
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 121 KPETWQMGE-HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ E + + E + Q + +E+ E++K+ +E+KE K+ + E+ E++ + QKE ++
Sbjct: 43 EKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEK 102
Query: 180 ISR 182
I
Sbjct: 103 IEL 105
Score = 26.8 bits (59), Expect = 5.6
Identities = 12/55 (21%), Positives = 31/55 (56%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E + ++E E++ +E + E+K++ E++E +++K E+ +KE + +
Sbjct: 45 EGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKE 99
Score = 26.0 bits (57), Expect = 10.0
Identities = 14/66 (21%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEE--KEEEKEEEEEKEEQKEEEEQKEE 177
+ PE + + +++E+ + E++ + +EK+E + K E++E+E K +++ E+ + +
Sbjct: 48 AVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSK 107
Query: 178 QQISRR 183
++ R
Sbjct: 108 KKQKER 113
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 33.0 bits (75), Expect = 0.070
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ + S++ + E EE+EEEE+EEEEE+E + E++ +
Sbjct: 212 LRTPPNSSSSSGSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKA 260
Score = 29.1 bits (65), Expect = 1.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
S++ + E EE+ EEEE+EEEEE+ + E+ + + E + R
Sbjct: 220 SSSGSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKASTSESITVPSR 271
Score = 27.6 bits (61), Expect = 3.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEE 158
P N+ + E+EE+E+EEEEE+EEE
Sbjct: 206 PTPRLGLRTPPNSSSSSGSDSESEEDEEEEEEEEEEE 242
Score = 27.6 bits (61), Expect = 4.8
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+ E E++EE+EEEEE+EE+ + ++ + S R A
Sbjct: 225 DSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKAS 261
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 33.0 bits (75), Expect = 0.075
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 107 LLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
V + T+ +K ++ +E+ N++E K E E E E
Sbjct: 784 TAVLSTTIKAAARAK--------------QKPKEKGPNDKEIKIESPSVETEGERC--TI 827
Query: 167 EQKEEEEQKEE 177
+Q+EE+
Sbjct: 828 KQREEKGIDAP 838
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 31.9 bits (73), Expect = 0.079
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
+ E + +EE ++EE+ E E+ E+ E+ E E E EEE +E + V
Sbjct: 71 ERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEP--TVTDYEEEYIDEDKYKTTV 127
Score = 30.0 bits (68), Expect = 0.32
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E ++E E+ +E KE + EEE ++EE+ E + E+ + +E
Sbjct: 59 EERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDE 101
Score = 29.2 bits (66), Expect = 0.58
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E ++E + E E +++E+ E ++ E E++E E E E++
Sbjct: 66 EKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEE 116
Score = 27.3 bits (61), Expect = 3.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+E +E + EEE +EE+ + E+ E+ E+ E + E + +
Sbjct: 70 KERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEE 116
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 32.1 bits (73), Expect = 0.080
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
++EEE+EEE EK++Q +E + ++ QQ
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQ 121
Score = 30.9 bits (70), Expect = 0.19
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
T++EEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 94 TRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 30.2 bits (68), Expect = 0.36
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
EEEE+EEE EK+++ +E + ++ Q+ E
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHE 123
Score = 27.9 bits (62), Expect = 2.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 156 EEEKEEEEEKEEQKEEEEQKEEQQI 180
++EEEE+EE+ E+++Q +E Q+
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQV 116
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 32.7 bits (74), Expect = 0.081
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ N +EE EE + EEE++EE + E E E++EEE + +
Sbjct: 172 PDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSD 220
Score = 32.3 bits (73), Expect = 0.12
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 118 VNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
V E + EEEE E + +EEEE++E + E + EEE++E
Sbjct: 157 VWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEA 216
Query: 178 Q 178
+
Sbjct: 217 E 217
Score = 30.7 bits (69), Expect = 0.35
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
S+ +EEEE+EE + E E EE+EEE E + E+ E ++I
Sbjct: 185 SDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERI 233
Score = 29.6 bits (66), Expect = 0.93
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EEEE EE + EEEE EE + + ++ EE++EE +
Sbjct: 175 DNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAE 217
Score = 29.2 bits (65), Expect = 1.1
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ +E+N+E + + EE+E EE + ++EEE+++
Sbjct: 158 WDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSD 199
Score = 28.0 bits (62), Expect = 2.8
Identities = 20/50 (40%), Positives = 24/50 (48%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
GE I Q EEEE EE E E E+E EE E+ ++QK E
Sbjct: 230 GERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQKVE 279
Score = 28.0 bits (62), Expect = 3.0
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E E E EEEE E ++ E+ + E E+ ++K+ EE++ E+++
Sbjct: 203 EGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEV 247
Score = 28.0 bits (62), Expect = 3.2
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
N + +E+ + + + + +EEE+ EE + E++E+EE
Sbjct: 154 FNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEE 195
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 32.7 bits (75), Expect = 0.081
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 33/75 (44%)
Query: 136 EEEEEEEENEEEEKEEE---------------------------------EEKEEEKEEE 162
+EEE+E+E E+E+K + EEKE E EE
Sbjct: 17 DEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAELREE 76
Query: 163 EEKEEQKEEEEQKEE 177
+E K++E KEE
Sbjct: 77 LREEFLKKQEAVKEE 91
Score = 30.0 bits (68), Expect = 0.60
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 26/79 (32%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEE--------------------------EEKEEQK 169
+++EEE+ +E E E++ KE + +E EEKE +
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAEL 73
Query: 170 EEEEQKEEQQISRRVADKD 188
EE ++E + V +++
Sbjct: 74 REELREEFLKKQEAVKEEE 92
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 33.0 bits (75), Expect = 0.081
Identities = 12/48 (25%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
+V ++ G++GN++V V++ + M +++L N++++DLM++
Sbjct: 32 IVFYILLFIFGLIGNVLVIAVLIVKRFMF-VVDVYLFNIAMSDLMLVF 78
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 32.5 bits (74), Expect = 0.082
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 111 TPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
T L E+ K E + S+ + EE E E+ ++ EK + EEE ++E+
Sbjct: 16 TAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVM 75
Query: 171 EEEQKEEQQIS 181
E+ KE Q+S
Sbjct: 76 SEKLKEPAQMS 86
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 32.8 bits (75), Expect = 0.084
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 131 ISNTQEEEEEEEENEEEEKEE-EEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
I + + E E+ E+ E EEE +E K+ EE +EEQ+EEE ++E + + R+A+
Sbjct: 187 IEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAE 243
Score = 31.3 bits (71), Expect = 0.31
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
I + EE +EE EE+ ++ E EE +E +E+ + Q+ +EE ++ + + + +
Sbjct: 518 IELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELL 575
Score = 30.9 bits (70), Expect = 0.41
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E+EEEE E E E EE + EE++E E+ + + E + E + + ++
Sbjct: 222 QEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEEL 276
Score = 29.7 bits (67), Expect = 0.90
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E + E EE + EE EEK EE E E +E Q+ E E++ E+++
Sbjct: 636 ESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEE 689
Score = 29.7 bits (67), Expect = 0.91
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + EEE +E + EE +EE+EE+E E+E E +E E EE+KE +
Sbjct: 202 EDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLE 252
Score = 29.7 bits (67), Expect = 1.1
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E EE E+E E E+E E E E+ +EE EE+ E+ E E+
Sbjct: 501 EEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEE 544
Score = 29.3 bits (66), Expect = 1.2
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E+ S+ E + + + EE E + EE E E +E ++ E EE+ E+K EE ++
Sbjct: 634 ELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQL 693
Query: 177 EQQISRRVAD 186
E+++ + +
Sbjct: 694 EEELEQLREE 703
Score = 29.3 bits (66), Expect = 1.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E E EE +EE +E+ E+ E EE EE +E+ + ++ KEE + +
Sbjct: 515 EELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQE 570
Score = 29.0 bits (65), Expect = 1.5
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ EEE E E EE +EE +E+ ++ E EE +E +E+ + QQ+
Sbjct: 508 KELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKE 559
Score = 29.0 bits (65), Expect = 1.6
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E + + +E E+ EE E+ + E EE EEK E + E++ +E ++ +++ + +
Sbjct: 322 EKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKEL 377
Score = 29.0 bits (65), Expect = 1.6
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ EE E E EE E+E E + +E EE E+ K EE+ E+
Sbjct: 290 IERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEK 333
Score = 28.6 bits (64), Expect = 2.4
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EH E E E E EEE E+E+ E +EE EE E++ E E++ + + A K
Sbjct: 469 EEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALK 528
Query: 188 D 188
+
Sbjct: 529 E 529
Score = 28.2 bits (63), Expect = 3.2
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
EEE E+ E E +EE EE E+E E EE+ + E E+ ++++ +
Sbjct: 487 EEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEK 534
Score = 28.2 bits (63), Expect = 3.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
EE +E E EE E+E EK E+ ++ E+ Q+ +EE E +
Sbjct: 359 LEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI 408
Score = 28.2 bits (63), Expect = 3.5
Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E ++ E +S +EE E EE EE EKE E +EE E E +E KEE E+K E+
Sbjct: 482 ELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEK 537
Score = 27.8 bits (62), Expect = 4.3
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE E+ ++ EE E+ EEK E+ E E E+ +++ E K ++ + + ++
Sbjct: 317 LEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER 369
Score = 27.8 bits (62), Expect = 4.4
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ E E EE +EE +E E+E EE + E EE EE+ ++ E++ Q S+
Sbjct: 390 AIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKE 447
Score = 27.8 bits (62), Expect = 4.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
Q+ +EE + E+ +E +E EE + KEE +E E+ +E
Sbjct: 553 QLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKE 597
Score = 27.4 bits (61), Expect = 5.1
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + + EE E EE+ E+ E + EE EE+ + + EE KE ++
Sbjct: 318 EELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368
Score = 27.4 bits (61), Expect = 6.0
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ + +E EE ++E EE +E KE +++ +E +E Q EE S +++
Sbjct: 566 DRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEA 624
Score = 27.4 bits (61), Expect = 6.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E +E EE+ E EE E+E EE +EE + EE +E E+ + +
Sbjct: 278 ELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLE 328
Score = 27.4 bits (61), Expect = 6.1
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
N + EE E EE+ EE EKE EK E K+ ++ +E KEE
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEEL 398
Score = 27.4 bits (61), Expect = 6.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
++ E +E EEE E +E EE E+ K EE E+ +E+ E+ E +
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL 345
Score = 27.0 bits (60), Expect = 7.6
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E + + EE EE E +E E E EE +EE E EE E+ E+ S
Sbjct: 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLE 328
Score = 27.0 bits (60), Expect = 7.8
Identities = 10/54 (18%), Positives = 28/54 (51%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ ++ E+ E EE E+ +E+ + ++ +EE + E + +E ++ ++
Sbjct: 524 EEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEE 577
Score = 27.0 bits (60), Expect = 7.9
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + EE E E E + E EE+ EE+ EE E+ EE+ E+ ++ E
Sbjct: 657 EELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELE 705
Score = 27.0 bits (60), Expect = 8.0
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E EE+ EE EE ++ EEE E+ +EE EE ++ E EQ +++ R A+ +
Sbjct: 678 ENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQ-LIEELESRKAELE 729
Score = 27.0 bits (60), Expect = 8.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
EE+ E E E E EE EE+ E E+ E+ E+ + E+++ +
Sbjct: 287 EEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEK 333
Score = 27.0 bits (60), Expect = 8.4
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EE E+E E + E EE EEE E+E+ E +EE E+ E++
Sbjct: 468 PEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKE 509
Score = 27.0 bits (60), Expect = 8.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E + N EE EE +E + ++ +EE ++ E +E KE +E + ++ +
Sbjct: 536 EKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL 591
Score = 26.6 bits (59), Expect = 9.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE + E EEK EE E E +E + + E++ EE+ +E +Q+ +
Sbjct: 645 QAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQL 700
Score = 26.6 bits (59), Expect = 9.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E + E EEE E +E +E+ EEK E+ E ++ EE +++ Q
Sbjct: 504 EELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQ 553
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 32.3 bits (74), Expect = 0.084
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E E+ + E+ + +K++ KE +++++ QK E E+ + ++ +
Sbjct: 5 EALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAP 56
Score = 28.4 bits (64), Expect = 2.0
Identities = 10/46 (21%), Positives = 27/46 (58%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
Q + ++++ +E +K+E+ +K E +E + E+ + K++ E +
Sbjct: 16 EQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAE 61
Score = 28.0 bits (63), Expect = 2.4
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+++ +E ++ E+ +K E EE + E+ + ++K E E
Sbjct: 23 KQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63
Score = 28.0 bits (63), Expect = 2.5
Identities = 9/48 (18%), Positives = 30/48 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ + E+ + ++++++E ++KE+ ++ E E+ + +E + +K+ I
Sbjct: 12 RRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIEN 59
Score = 26.1 bits (58), Expect = 9.9
Identities = 7/40 (17%), Positives = 22/40 (55%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
++ +E + +E+ ++ E E+ + +E + +K+ E +
Sbjct: 24 QKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 32.6 bits (75), Expect = 0.090
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 126 QMGEHISNTQEEEEEEEENEE---EEKEEEEEKEEEKEEEEEKEE-QKEEEEQKEEQQIS 181
+G+ S +E + E+ + EKE+ EE+ E E ++E + +EE +
Sbjct: 9 ILGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERL 68
Query: 182 R 182
+
Sbjct: 69 K 69
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 32.9 bits (75), Expect = 0.091
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 111 TPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
PT L E + E GE + +E EE+E+E + + ++ E E+E EE E E
Sbjct: 261 EPTGLDEDEDEDEPKPSGERSDSEEETEEKEKE-KRKRLKKMMEDEDEDEEMEIVPESPV 319
Query: 171 EEEQKEEQQ 179
EEE+ EE +
Sbjct: 320 EEEESEEPE 328
Score = 30.2 bits (68), Expect = 0.55
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++E+EE E E EEEE +E E +KEE+KEE +
Sbjct: 303 EDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDG 348
Score = 29.8 bits (67), Expect = 0.85
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE------------EKEEQKEEEEQKEEQ 178
S +EE EEE + E+E + +E+E + EE+ EE+E+++ +
Sbjct: 237 ESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRK 296
Query: 179 QISRRVADKD 188
++ + + D+D
Sbjct: 297 RLKKMMEDED 306
Score = 29.0 bits (65), Expect = 1.4
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++E E +EE +EE +++ E+E + +E+E ++E + S +D +
Sbjct: 232 KKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSE 284
Score = 29.0 bits (65), Expect = 1.7
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E+E+E+ E E E +EEE EE E K+EEE++E
Sbjct: 302 MEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEE 341
Score = 28.6 bits (64), Expect = 2.1
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 128 GEHISNTQEEEEEEE--ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ E+E+E+E + E EEE +E+EKE+ + ++ E+E++ EE +I
Sbjct: 259 SAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEI 313
Score = 28.3 bits (63), Expect = 2.3
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EEE E+E+++ + K+ ++E+E++E + E EE++
Sbjct: 284 EEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEES 324
Score = 28.3 bits (63), Expect = 3.0
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E+E+EE E E EEEE EE + K+E+++EE RR
Sbjct: 305 EDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRR 352
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 32.7 bits (74), Expect = 0.091
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ N + T + + + EE +EE ++ E EE EEEE++ ++ + +KE
Sbjct: 402 QCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKE 461
Query: 177 EQQISRRVADK 187
+++ +
Sbjct: 462 DREFPDEAELQ 472
Score = 30.8 bits (69), Expect = 0.38
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
S Q + E+EE E+ + +EE ++++ KE EE EE I
Sbjct: 386 SFYQAKWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAI 434
Score = 29.7 bits (66), Expect = 0.98
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 115 LVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEK---EEEKEEEEEKEEQKEE 171
+ ++ E ++ +E ++ E EE EEEE+ E E+E++E E
Sbjct: 410 MSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEA 469
Query: 172 EEQKEEQQISR 182
E Q E I R
Sbjct: 470 ELQPSESAIER 480
Score = 29.3 bits (65), Expect = 1.6
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 126 QMGEHISNTQ---EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ N + +EE ++NE E+ EE+E + E + E++ E + E Q S
Sbjct: 416 DDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQPSE 475
Query: 183 RVADK 187
++
Sbjct: 476 SAIER 480
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 31.9 bits (73), Expect = 0.093
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
E+EE E + EKE E+ ++E+E E K +Q+
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAKRQQR 114
Score = 31.5 bits (72), Expect = 0.12
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 148 EKEE-EEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EKEE E K EKE E+ ++++E E K +Q+
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAKRQQR 114
Score = 29.9 bits (68), Expect = 0.43
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 149 KEEEEEKEEEKEEEEEKEEQ-KEEEEQKEEQQISRR 183
K E+EE+E K E+E EQ K+EEE +E ++ R+
Sbjct: 80 KNEKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 32.1 bits (73), Expect = 0.095
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
E + E++ E +E +EEE EE +E EE +
Sbjct: 141 EARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 29.7 bits (67), Expect = 0.67
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E E + E +E EEEE EE EE EE
Sbjct: 144 AEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESA 185
Score = 29.4 bits (66), Expect = 0.83
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E E++ NE + E+K E +E EEE+ EE
Sbjct: 134 EAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEE 173
Score = 27.0 bits (60), Expect = 4.7
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEE---EKEEEEEKEEQKEEEEQKEE 177
++ ++ ++ E EK+ E + E EK+ E EE EE
Sbjct: 122 SKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEE 168
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 30.4 bits (69), Expect = 0.098
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
++E + EEEK EE+EE ++EE+KE E+ K
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 28.5 bits (64), Expect = 0.48
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++E EEEK EEEE+ ++EE +E+E+ K EE E ++ R
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESELDWR 69
Score = 27.7 bits (62), Expect = 1.0
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEK--EEQKEEEEQ 174
+++E + EE + EE+EE ++EE KE E+ K EE E E
Sbjct: 25 KKKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESEL 66
Score = 27.7 bits (62), Expect = 1.0
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
K++E + EEEK EEEE+ ++EE +++E+
Sbjct: 24 AKKKELKAEEEKREEEEEARKREERKEREKN 54
Score = 25.8 bits (57), Expect = 5.3
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ +++E + EE+ +EEEE ++ E+ +E EK + EE + E
Sbjct: 23 KAKKKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESEL 66
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 33.0 bits (76), Expect = 0.099
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E I Q + EE EE EE+ E EE +E++EE E + E EEE
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE 391
Score = 32.2 bits (74), Expect = 0.14
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++E+E E+ ++E E E E E E++ Q+ EQ
Sbjct: 550 LDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
Score = 27.6 bits (62), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 140 EEEENEEEEKEEEEEKEEEKEE--EEEKEEQKEEEEQKEEQQIS 181
E+ E + + EE EE+ EE+ E EE E+Q+E E + E +
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE 391
Score = 27.6 bits (62), Expect = 5.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 135 QEEEEEEEENEEEEKEEEEEK--EEEKEEEEEKEEQKEEEEQ 174
+ E + + E EE+ EE+ + EE E++EE E + E E+
Sbjct: 349 KIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEE 390
Score = 27.2 bits (61), Expect = 5.8
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++G+++ + E E+ +EE E + E E +E +Q E+ + + ++ +R
Sbjct: 545 RLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARA 602
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 32.9 bits (76), Expect = 0.100
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++ +EE E E +KEEE+EK ++ E K+ + E+++Q +
Sbjct: 166 DDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNF 208
Score = 32.5 bits (75), Expect = 0.11
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ E ++ + E E+ E ++E+E+EK +E E K+ E +K++Q +
Sbjct: 162 DFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKN 207
Score = 31.7 bits (73), Expect = 0.22
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
+ +EE E+ E +++EE+E+ +E E +K E +++++ K V
Sbjct: 167 DSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPV 215
Score = 31.0 bits (71), Expect = 0.38
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ + ++ KEE E+ E +KEEE+EK ++ E K+ + ++ +
Sbjct: 157 GILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNF 208
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 32.5 bits (75), Expect = 0.10
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+GE +E EEEE + + + ++E+++ + +E +KE Q +
Sbjct: 224 LGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPV 277
Score = 32.5 bits (75), Expect = 0.11
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
EEEEEEEE EEEE + E + +Q++++ + Q+ +
Sbjct: 224 LGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKE 273
Score = 32.5 bits (75), Expect = 0.11
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
+EEEEE EE E + E + ++E+Q+ +++E ++ ++ V
Sbjct: 225 GEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPV 277
Score = 28.7 bits (65), Expect = 1.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
EEEEEEE EEE+ + E + ++E+++ ++Q + A
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEA 274
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 31.6 bits (72), Expect = 0.11
Identities = 9/50 (18%), Positives = 24/50 (48%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + EE E ++E EE+++ ++ +++ E+++ + Q
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQ 79
Score = 29.7 bits (67), Expect = 0.55
Identities = 9/47 (19%), Positives = 25/47 (53%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E+++ E + +EE E ++E EE+++ ++ +++ +Q
Sbjct: 27 KPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQ 73
Score = 26.6 bits (59), Expect = 5.8
Identities = 9/47 (19%), Positives = 28/47 (59%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++++ E + +E+ E +++ EE+++ QK +E+ ++E+ +
Sbjct: 32 EKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKN 78
Score = 26.2 bits (58), Expect = 7.6
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
NT +EE E ++E EE++K ++ +E+ E+++ + + E
Sbjct: 38 INTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATE 87
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 32.6 bits (74), Expect = 0.11
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKE------------EEKEEEEEKEEQKEEEEQK 175
GEH ++ +E E + EEEK+ E+ E E E+ K
Sbjct: 697 GEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLK 756
Query: 176 EEQQISRRVAD 186
++Q +R+A
Sbjct: 757 AQKQQQKRIAA 767
Score = 29.1 bits (65), Expect = 1.7
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKE------------EEEEKEEQKEEEEQKEEQQ 179
++E E+ +E EE EEEK+ EE + + ++ +
Sbjct: 697 GEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLK 756
Query: 180 ISRRVADKD 188
++ +
Sbjct: 757 AQKQQQKRI 765
Score = 27.9 bits (62), Expect = 4.4
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE-----EQKEEQQISRRVADKD 188
E + ++ + +E EE E K E E +KE E E +E+ + +KD
Sbjct: 668 STLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKD 725
Score = 27.6 bits (61), Expect = 4.9
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 129 EHISNTQEEEEEE--EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
++ EE E E E ++E E+ ++ EE+ EEE+ +
Sbjct: 678 SQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDAD 727
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 31.6 bits (72), Expect = 0.12
Identities = 10/55 (18%), Positives = 16/55 (29%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
SK E + ++ E +++ E E E EEE
Sbjct: 101 SKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 31.6 bits (72), Expect = 0.14
Identities = 5/44 (11%), Positives = 10/44 (22%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + + +K++ E E E
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAA 150
Score = 28.9 bits (65), Expect = 0.89
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + K+++ E E + EE+
Sbjct: 112 EADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 30.7 bits (70), Expect = 0.12
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+EEE KE+ EE E+ +EE E + +++EE ++K ++ I R
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRK 82
Score = 29.9 bits (68), Expect = 0.18
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+++EEE +E+ EE EK EE + E KE EE KE++K E++
Sbjct: 39 SKDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEER 80
Score = 29.2 bits (66), Expect = 0.39
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S +EE +E+ E E+ +EE E + +E+EE +EK ++ EE +K+ ++
Sbjct: 39 SKDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEE 86
Score = 27.2 bits (61), Expect = 1.9
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E +E+ EE E+ +E E E++E +E +E+++ EE +K E++
Sbjct: 44 ERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 26.9 bits (60), Expect = 2.9
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+EEE +E EE ++ EE E E++E EE++E+++ ++ ++I R
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 25.3 bits (56), Expect = 8.6
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEE--EEEKEEQKEEEEQK 175
++E+ EE E EE E E ++ EE++E + EE++++ E++
Sbjct: 43 EERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking. Sec14-like
Golgi-trafficking domain The GOLD domain is always found
combined with lipid- or membrane-association domains.
Length = 136
Score = 31.6 bits (72), Expect = 0.12
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKE 156
H+S + +EEEEEE EEE + + E
Sbjct: 50 HVSESSDEEEEEEAEEEEAETGDVEAG 76
Score = 29.7 bits (67), Expect = 0.56
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEK 159
S + + E S+ +EEEE EEE E E K + +
Sbjct: 41 PPTSDAVSVHVSES-SDEEEEEEAEEEEAETGDVEAGSKSQSR 82
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 31.5 bits (72), Expect = 0.12
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E +KEEE ++E E+ E E + E E QK
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.5 bits (67), Expect = 0.58
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+ +E ++EEE +E E+ E E E E E +K
Sbjct: 99 QSRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 27.2 bits (61), Expect = 2.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+E +EEE ++E E+ E + E E E ++++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 27.2 bits (61), Expect = 2.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
+E ++EE ++E EE E + E E E E+++ +
Sbjct: 96 YQRQSRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 26.1 bits (58), Expect = 7.1
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEE-EEEKEEQKEE 171
+ Q + +E + EEE ++E EE E E E E E QK
Sbjct: 93 VYEYQRQSRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 32.3 bits (74), Expect = 0.12
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E E + EE ++E K+ EE+ E+ + E E+KEE+ E+ + K + +++A K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKY 144
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 32.5 bits (75), Expect = 0.12
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+ EEE +E+ + ++ EEKE++ EK E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 0.16
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+ EEE +E+ E +E E++E+K E+ +
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 0.16
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE------QQISRRVA 185
+ E+E KE+ + ++ E+KE++ +K E ++ RVA
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEITIDDFDKVELRVA 556
Score = 31.3 bits (72), Expect = 0.31
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
+ EEE +++ E +E EE+E+K E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.9 bits (71), Expect = 0.36
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+ EEE +E+ E KE E++E++ ++ +
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.2 bits (69), Expect = 0.65
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+ E E +E+ E KE EE++++ ++ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.2 bits (69), Expect = 0.72
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
+EE +E E +E E++E+K E+ E
Sbjct: 512 VEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.0 bits (66), Expect = 1.6
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ EE+ +++ E +E EE++++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 27.5 bits (62), Expect = 4.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ EE +E+ + +E EEKE++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 31.1 bits (70), Expect = 0.12
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ EE +E ++E +EEEE E+++EEE E EE++ EEE++ E +R A+ +
Sbjct: 36 GNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDE 91
Score = 29.9 bits (67), Expect = 0.25
Identities = 21/57 (36%), Positives = 38/57 (66%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+EEEE +E++EEEE E EEE+ EE+EE E ++ E+++++ + ++ D+D
Sbjct: 49 DEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQKTDED 105
Score = 29.2 bits (65), Expect = 0.49
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ + EEEEE +E++EEE+ E EE+E E+EEE E K E +E+ +++
Sbjct: 45 QEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKK 99
Score = 27.6 bits (61), Expect = 2.0
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E ++E EEEE+ +E+++EEE E EEE+ E++EE E ++ + D
Sbjct: 44 AQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDD 94
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 32.2 bits (72), Expect = 0.13
Identities = 14/64 (21%), Positives = 39/64 (60%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
K +T + G ++N+Q + E+E++ E+EK++ E+++++ K + E+E+++ +
Sbjct: 162 KQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENE 221
Query: 181 SRRV 184
+ +
Sbjct: 222 KQDL 225
Score = 29.9 bits (66), Expect = 0.79
Identities = 15/63 (23%), Positives = 39/63 (61%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
N++ + G + +++ E+E++ E+E E + + E+E++K EQ++++ ++E+Q
Sbjct: 139 NARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQ 198
Query: 179 QIS 181
+ S
Sbjct: 199 KTS 201
Score = 28.7 bits (63), Expect = 1.9
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E E+E+++ E E E + K E+++++ E+E+QK E+E+++ I+ + A +
Sbjct: 152 EQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIE 210
Score = 28.3 bits (62), Expect = 2.8
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E E+ E++ ++E+++ E+E E + + E+E+QK EQ+ + +K
Sbjct: 150 ELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEK 197
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 32.2 bits (74), Expect = 0.13
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++EEE+E E EEE K E ++E+ + EEE + E++E +E+KE
Sbjct: 137 RIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKER 182
Score = 30.3 bits (69), Expect = 0.49
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 6/55 (10%)
Query: 135 QEEEEEEEENEE------EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E E+E EE +E +E+ E +E+++EKEE E++ QK+E ++ E+QI +
Sbjct: 192 EEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEK 246
Score = 29.9 bits (68), Expect = 0.80
Identities = 16/44 (36%), Positives = 33/44 (75%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ +EE+E E +E+ +++++ +EE E EE+ E+KEEE+++E +
Sbjct: 107 RIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKERERE 150
Score = 29.1 bits (66), Expect = 1.4
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE E+ +EE EE+ +E+E+ +E E+ +EE++ E Q+
Sbjct: 81 EEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQE 118
Score = 28.7 bits (65), Expect = 1.7
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE+ + +E+EEE+ ++ EEE+ + EEE++E ++ R +
Sbjct: 27 EEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRA 74
Score = 28.7 bits (65), Expect = 1.8
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E+E E +E E++K+ EE +E EE E++E+++E E++EE +I +K
Sbjct: 110 EEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKA 163
Score = 28.3 bits (64), Expect = 2.4
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 136 EEEEEEEENEEEEKEEEEEK----EEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE E +E E+E + EEE K + EK E EE+ E + E ++E+++ R+ +
Sbjct: 135 EERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQ 190
Score = 27.6 bits (62), Expect = 4.0
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EE+ EE EE +EE E+E E+E EK+ + EE EQ+ ++
Sbjct: 237 RAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEK 281
Score = 27.6 bits (62), Expect = 4.1
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEE + EEE+ E + KEE +E +EQ EE E++ +++ R+ +++
Sbjct: 48 EEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQERE 99
Score = 27.6 bits (62), Expect = 4.7
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E ++E+EE E+ ++++E + +E+ EEKEE+ +EE +EE
Sbjct: 216 KERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEA 259
Score = 27.2 bits (61), Expect = 5.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 135 QEEEEEEEENEEEEKEEE---------EEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
EE E+E + K E EEKEE + E E+E ++ E ++EE + R+
Sbjct: 271 DEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARI 329
Score = 27.2 bits (61), Expect = 6.1
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE+EE + E E+E E E+ EK+ E+E+ EQ+ E+++ ++
Sbjct: 243 IEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRL 287
Score = 26.8 bits (60), Expect = 7.3
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
EE+EE E +EE EE E +EEE E++ + EEE Q+
Sbjct: 298 EEKEERRAAEREEELEEGERLREEEAERQARIEEERQR 335
Score = 26.8 bits (60), Expect = 7.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+E +EE EE E+E EK+ E EE E++ +K ++ E
Sbjct: 247 EERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLE 288
Score = 26.4 bits (59), Expect = 9.3
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ EH +++ EE+EE E+EEE E+ E EEE + + + EEE
Sbjct: 285 KRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARIEEE 332
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 31.7 bits (72), Expect = 0.13
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E+ EE EEEE+E + EE E++++KE Q E +I++ +A
Sbjct: 85 EKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMA 131
Score = 28.2 bits (63), Expect = 2.4
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 22/86 (25%)
Query: 123 ETWQMGEHISNTQEEEEE--------EEENEEEEKEEEEEKEEEKEEEEEKEE------- 167
E + E + +EEE E EEN E++KE+E ++ + E +
Sbjct: 79 ELFPSAEKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIA 138
Query: 168 -------QKEEEEQKEEQQISRRVAD 186
++E++ + +++ R VA+
Sbjct: 139 DWRAQKRKREQKARAAKERKERLVAE 164
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 32.3 bits (74), Expect = 0.13
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+ EE EEE EE E+ + E+ + E + ++E Q
Sbjct: 828 LEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 30.7 bits (70), Expect = 0.48
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
EE EEE E EE + E+ K E+ ++E+ +
Sbjct: 834 EEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQLG 867
Score = 30.0 bits (68), Expect = 0.89
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E E EE +EE E+ EE + E+ K E ++E +
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQL 866
Score = 28.8 bits (65), Expect = 1.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+ I+ + EE E E E+ EE + E+ K E++ +E
Sbjct: 823 KTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDE 861
Score = 28.4 bits (64), Expect = 2.7
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+ E E E EEE EE E+ + ++ + E + E+ Q
Sbjct: 820 YKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 27.7 bits (62), Expect = 4.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
T + + E E EE EE+ E+ EE + E+ K E++ +E
Sbjct: 818 TTYKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDE 861
Score = 27.3 bits (61), Expect = 5.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E E EE EEE +E E+ + E+ + + + +++ Q
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQL 866
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 32.2 bits (74), Expect = 0.14
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
Q E + E +++EEN E++++E KE+ +E+EE+ E+ E+++E ++IS
Sbjct: 87 QREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERIS 142
Score = 30.7 bits (70), Expect = 0.47
Identities = 12/49 (24%), Positives = 30/49 (61%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ EE + + E ++KEE E++E++ KE+ ++E+++ +A++
Sbjct: 87 QREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQR 135
Score = 30.3 bits (69), Expect = 0.68
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK--EEQKEEEEQ 174
E+ + Q E +EE + + ++KEE EK+E++ +EK +E++EE E+
Sbjct: 70 ELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEE 129
Query: 175 KEEQQ 179
+Q
Sbjct: 130 LIAEQ 134
Score = 29.5 bits (67), Expect = 1.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 135 QEEEEEEEENEEEEKEEEEE----------KEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E + E E E KE E +EE + + E ++KEE +K+E+++S +
Sbjct: 58 EEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNK 116
Score = 29.1 bits (66), Expect = 1.6
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE ++E E +KE E +EE + + E++ +E + E Q++ RR+ +
Sbjct: 39 EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQR 88
Score = 28.7 bits (65), Expect = 1.7
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 136 EEEEEEEENEEEEKEEE--EEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
EE ++E E ++E E EE + + E E + +++ E Q+ E+++ +R
Sbjct: 39 EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQR 88
Score = 28.0 bits (63), Expect = 3.1
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 135 QEEEEEEEENE-----EEEKEEEEEKEEEKEEE-EEKEEQKEEEEQKEEQQISR 182
Q EE + + E EE E++E++ KE+ +EKEE+ EE ++ +++ R
Sbjct: 87 QREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELER 140
Score = 27.6 bits (62), Expect = 5.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 135 QEEEEEEEENEEEEKEE--EEEKEEEKE-EEEEKEEQKEEE--EQKEEQ 178
+E E ++E E KEE + E E+E +E E Q+ E Q+EE
Sbjct: 43 KEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREET 91
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 31.8 bits (72), Expect = 0.14
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ EE E+E E E+EK+ E+ EEKE+++E EE KEE E+ E+
Sbjct: 153 KEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEE 202
Score = 29.8 bits (67), Expect = 0.55
Identities = 13/47 (27%), Positives = 32/47 (68%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ EE E+E E E++++ EK E++E++++ E+ +EE ++ +++
Sbjct: 158 RLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
Score = 29.8 bits (67), Expect = 0.65
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E++E EE E+E +E E+EK+ ++ EEKE++KE EE KEE +
Sbjct: 151 KRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELE 197
Score = 29.4 bits (66), Expect = 0.82
Identities = 12/48 (25%), Positives = 32/48 (66%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ +E++E E E++ EE E E++ E+ +E++K++E ++ ++++
Sbjct: 151 KRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEE 198
Score = 29.4 bits (66), Expect = 0.94
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E + ++E EE E+ ++ ++ EEKE++KE EE KEE +E E+ E
Sbjct: 157 ERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
Score = 29.1 bits (65), Expect = 1.2
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E EE E+ EE ++E++ E+ EE+E+K+E +E +E+ EE
Sbjct: 153 KEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Score = 27.9 bits (62), Expect = 2.4
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EE E+E EE E E++ ++ +E+E++KE ++ +EE +E +
Sbjct: 157 ERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLE 201
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 31.0 bits (70), Expect = 0.14
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E+E E E EE E++ E +E + E E KEEQ+ +R
Sbjct: 8 GYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQR 52
Score = 29.8 bits (67), Expect = 0.44
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E E EE E+ E +E + E E+KEEQ+ + +
Sbjct: 15 EPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPR 54
Score = 29.5 bits (66), Expect = 0.51
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E+E E EE EE+ E E + E +++EEQ+ Q
Sbjct: 9 YEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQ 51
Score = 29.5 bits (66), Expect = 0.62
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
MG ++ E EE E + E +E K E E+++E++ + +K
Sbjct: 7 MGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRK 55
Score = 29.5 bits (66), Expect = 0.62
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
N + E+E +E E +E EE E +E K E E+++E++ + R
Sbjct: 3 NDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQR 52
Score = 27.9 bits (62), Expect = 2.0
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E E E E E++ E +E + + E KEE+E + + + K
Sbjct: 11 DEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRKTTPYMTK 62
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 32.2 bits (73), Expect = 0.16
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E I Q + EE EE+ E EE E +EE E + E E E
Sbjct: 348 EKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELE 391
Score = 26.8 bits (59), Expect = 10.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
QE+ E + + EE EE+ E EE E++E+ E + E ++
Sbjct: 347 QEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEV 392
>gnl|CDD|150542 pfam09882, DUF2109, Predicted membrane protein (DUF2109). This
domain, found in various hypothetical archaeal proteins,
has no known function.
Length = 78
Score = 30.0 bits (68), Expect = 0.16
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 65 SIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLV-------- 116
+ IG++ +M +L+ R + +MN IA L+ L + TP V
Sbjct: 1 IAEIIIGIIAILMALRALLERDRARKLLYLNVMNFGIAGLIALYIKTPMGAVAAAAYFIG 60
Query: 117 ---EVNSKPETWQMGEHI 131
E N+ T E I
Sbjct: 61 STIESNAIAHTIAEIEEI 78
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 32.1 bits (73), Expect = 0.16
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
S+ EE + +E E +E +E+E+ EE KEE E+K++ + R
Sbjct: 314 SDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPR 365
Score = 30.5 bits (69), Expect = 0.50
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 144 NEEEEKEEEEE--KEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EEE ++E + +E E EE ++E + + RRV K
Sbjct: 241 QEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFKK 286
Score = 28.2 bits (63), Expect = 2.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE------QKEEQQISRRV 184
QEEE ++E + + E EE EEE + Q +E +K +++ +RRV
Sbjct: 241 QEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQKRTTRRV 296
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 31.6 bits (71), Expect = 0.16
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ EE E++ E+ +E E++ EE E+EEE EEQK +EE
Sbjct: 29 KEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEE 68
Score = 30.5 bits (68), Expect = 0.38
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E E+ + E EE E++ ++ +E E++ EE E+EE+ EEQ+ +
Sbjct: 23 EREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEI 69
Score = 29.7 bits (66), Expect = 0.70
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+E+ ++E E E+K E+ +E E + EE E+++E EEQK +++I
Sbjct: 24 REKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEI 69
Score = 27.8 bits (61), Expect = 3.0
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
++ E E+ EE E++ EE E+EE+ EE++ +EE + +E + +E+ +
Sbjct: 30 EVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEKNL 84
Score = 26.6 bits (58), Expect = 6.7
Identities = 13/50 (26%), Positives = 34/50 (68%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ ++ ++ ++E EE E++ E+ E+ E++ EE ++E++ EE++ +E+
Sbjct: 19 DELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEE 68
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 30.7 bits (70), Expect = 0.17
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKE--EEEEKEEQKEEEE 173
+EE+EEE E + K E+E+ + + EEEE+E+Q+ EE
Sbjct: 67 GDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 29.6 bits (67), Expect = 0.37
Identities = 12/41 (29%), Positives = 29/41 (70%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++ + +EE+E+E E +++ E+E+ + E EEEE+++++
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQR 104
Score = 28.4 bits (64), Expect = 0.90
Identities = 14/41 (34%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKE---EEEQKEEQQ 179
++ + ++E+EEE+E +++ E+EK + E EEE++E+Q+
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQR 104
Score = 27.6 bits (62), Expect = 2.0
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ +EE+ EE E + + E+E+ E EE++EE+++ E+
Sbjct: 68 DGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 32.1 bits (73), Expect = 0.17
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
EE+ +E E+ +EE E E + EEQ+ EE+K + R
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADR 289
Score = 32.1 bits (73), Expect = 0.18
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 141 EEENEEEEK--EEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EE+ E EK +EE E+E + EE+ +EE+K E Q
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQ 291
Score = 29.8 bits (67), Expect = 0.81
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 151 EEEEKEEEK--EEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE+ +E EK +EE E+E Q EE +++ E++ + AD+
Sbjct: 252 EEKRRELEKLAKEEAERERQAEE-QRRREEEKAAMEADRA 290
Score = 29.8 bits (67), Expect = 0.95
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E+ E E+ +EE E E + EE++ EEEK + + Q + + RR
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRR 300
Score = 28.7 bits (64), Expect = 2.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEK-EEEEEKEEQKEEEEQKEE 177
E+ +EE E + EE+ +EEEK E ++ + K E E++ E
Sbjct: 258 LEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRRE 301
Score = 27.9 bits (62), Expect = 4.3
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEE--EEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E SN +EE + + ++ E E E E E E E+ + + ++E
Sbjct: 49 VEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQSDVLKSSSIVKEESISTDMDGI 108
Query: 186 DKD 188
D D
Sbjct: 109 DDD 111
Score = 26.8 bits (59), Expect = 8.7
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 111 TPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEE-EEKEEQK 169
P VE + K G+ ++ E+ +EE + + + E E+
Sbjct: 15 APRTTVESSQKRIQQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEV 74
Query: 170 EEEEQKEEQQISRRVADKD 188
E E++ E +Q V
Sbjct: 75 EAEDEIEVEQNQSDVLKSS 93
>gnl|CDD|191022 pfam04538, BEX, Brain expressed X-linked like family. This is a
family of transcription elongation factors which
includes those referred to as Bex proteins as well as
those named TCEAL7. Bex1 was shown to be a novel link
between neurotrophin signalling, the cell cycle, and
neuronal differentiation, suggesting it might function
by coordinating internal cellular states with the
ability of cells to respond to external signals. TCEAL7
has been shown negatively to regulate the NF-kappaB
pathway, hence being important in ovarian cancer as it
one of the genes frequently downregulated in this
cancer. A closely related protein, TFIIS/TCEA, found in
pfam07500 is involved in transcription elongation and
transcript fidelity. TFIIS/TCEA promotes 3'
endoribonuclease activity of RNA polymerase II (pol II)
and allows pol II to bypass transcript pause or 'arrest'
during elongation process. It is thus possible that BEX
is also acting in this way.
Length = 97
Score = 30.4 bits (69), Expect = 0.17
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E+ KE E + E E +EEEEK +E E +K E RR+
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRRRLRR 43
Score = 26.2 bits (58), Expect = 4.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
E E + E E EEEEK EE E +K E +
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRR 39
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 32.0 bits (73), Expect = 0.18
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 75 NIMVPCVILKSKDMRNSTNIFLMNLSIA-DLMVLLVCTPTVLVEVNSKPETWQMGEHISN 133
N+++ V+LK+ N I L IA D V T ++ N K + + +
Sbjct: 316 NVLLDYVLLKNDSKLNKKYI----LKIANDWARKKVKTAYEAIKENRKRKELALAK---- 367
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
Q + +EN + E +K +EE+ + E K EE ++ E +R
Sbjct: 368 KQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRLENGKQKR 417
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 31.8 bits (73), Expect = 0.18
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E +E+E EE + + E E+ E+ E+ EE E+
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREE 299
Score = 30.3 bits (69), Expect = 0.66
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+E+E EE + E E E+ E+ E EE + E++ + E
Sbjct: 266 KEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKAIHPE 307
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 32.0 bits (72), Expect = 0.18
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 129 EHISNTQEEEEEEEENE-EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV-AD 186
+ TQ EE+ N E+ + E EE+ +++EE + QKE E + + + S AD
Sbjct: 463 MTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEAD 522
Query: 187 KD 188
KD
Sbjct: 523 KD 524
Score = 32.0 bits (72), Expect = 0.19
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 19/69 (27%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEE-------------------KEEQKEEEE 173
N E+ E EE+ +++EE + +KE E E K ++++ +E
Sbjct: 478 NRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDE 537
Query: 174 QKEEQQISR 182
++EE+++
Sbjct: 538 EEEEKKLKM 546
Score = 28.9 bits (64), Expect = 2.0
Identities = 7/45 (15%), Positives = 21/45 (46%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EE + +E+ + E+ E E+ ++++++ + Q
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQ 503
Score = 28.5 bits (63), Expect = 2.2
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE E++ E+ + E EE +++E+ + Q+
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQK 504
Score = 27.0 bits (59), Expect = 6.9
Identities = 13/65 (20%), Positives = 26/65 (40%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+E + K E+ S + + ++EE E+ E E EEK + E+ +
Sbjct: 274 IEEDVKVESLDSSTLKSAVCNDPGNIDVSKEELSEKIPELMVECRLVEEKLDTFEDNNKN 333
Query: 176 EEQQI 180
++
Sbjct: 334 KDIME 338
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 31.6 bits (71), Expect = 0.19
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 23/66 (34%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEE-----------------------EEEKEEQKE 170
T+E+E +E+E EEEE+EEEE + EE E+ EE EE+
Sbjct: 130 TKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEESV 189
Query: 171 EEEQKE 176
E + E
Sbjct: 190 TEAEAE 195
Score = 30.4 bits (68), Expect = 0.52
Identities = 16/34 (47%), Positives = 27/34 (79%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
N ++ +E+E++E+E+EEEEE+EEE E EE ++
Sbjct: 124 NAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 30.0 bits (67), Expect = 0.71
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
++ +E+E +E EEEEE+EEE+E E E+ EQ
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 29.7 bits (66), Expect = 0.95
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
S++ EE + + +EEE +EE +EE E+ + E+++ E E
Sbjct: 48 SDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 29.3 bits (65), Expect = 1.2
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ + + EE + + E+E EEE E+E E+ + ++EE + E +S
Sbjct: 44 VQSGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLS 94
Score = 29.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
++ +E+E +E+EE+EEE+EEEE + E+ E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 28.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
N ++ +E+E +E++EEEEE+EE++ E E+ E+
Sbjct: 124 NAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 28.9 bits (64), Expect = 1.6
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+K +E++ +E EEEEE+EE++E E ++ EQ +
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQGTN 160
Score = 27.0 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 25/32 (78%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
++ +E++ +E+E+EEE+EEEEE E ++ E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 26.6 bits (58), Expect = 7.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
E + EEE EE E+E E+ + ++EE E E
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 31.5 bits (72), Expect = 0.19
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
G S +E E EE+ E ++K EK E+EK ++ E+ EE
Sbjct: 294 GLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEE 343
Score = 30.4 bits (69), Expect = 0.53
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E+E+ EE E+ EE +E + EE ++K E E+ +K +
Sbjct: 326 IREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKS 370
Score = 30.0 bits (68), Expect = 0.68
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEE--EEKEEQKEE 171
L + + E H + EEE E ++ E+ E+E++ EE E+ EE++E +
Sbjct: 291 KLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSK 350
Query: 172 EEQKEEQ 178
E+ +++
Sbjct: 351 LEEIQKK 357
Score = 30.0 bits (68), Expect = 0.69
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E +S + E + E + EEE+E +K+ E+ E+++ E+ E+ I R
Sbjct: 290 EKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEER 344
Score = 29.6 bits (67), Expect = 0.95
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ I + EEE E ++ ++ E+++ +E E+ E+++E K E+ +
Sbjct: 304 KEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKK 357
Score = 27.7 bits (62), Expect = 4.5
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E I ++ EE E+N EE++E K EE +++ E E++ E+ + +
Sbjct: 324 EKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSNKS 373
Score = 27.3 bits (61), Expect = 5.0
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E EEE E ++K E+ +E+EK EE E+ EE ++ ++
Sbjct: 308 EARLNEEERELKKKFTEKIREKEKRL-EELEQNLIEERKELNSKLEEI 354
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 31.5 bits (72), Expect = 0.19
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKE 160
E + EEEEEEE E EE+EEEE++EE+KE
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 30.3 bits (69), Expect = 0.60
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
EE+ EE EEEE E EE+EEE++EEE+KE
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 29.9 bits (68), Expect = 0.70
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
E +S E+ EE+ E EEEE+ E E+EEE+E+EEEK+E+
Sbjct: 7 EKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKP 47
Score = 28.4 bits (64), Expect = 2.1
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
EE+ +EEEEE+ E EEEEE+E+++E++E+
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKP 47
Score = 27.2 bits (61), Expect = 5.5
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E + EE+EEEE E E+EEEEE EE+K+E+ ++ + +KD
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKD 62
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 28.8 bits (65), Expect = 0.20
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQK 169
EEEK E+EE+ E++EE EE+ E K
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 28.1 bits (63), Expect = 0.43
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEK 159
+S +EE+ E+EE E+E+E EE+ E ++
Sbjct: 18 LSLCEEEKREDEEENEDEEEGEEQSEVKR 46
Score = 28.1 bits (63), Expect = 0.48
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEE 163
EEE+ E+EE+ E+EE+ EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 27.7 bits (62), Expect = 0.60
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 152 EEEKEEEKEEEEEKEEQKEEEEQK 175
EEEK E++EE E++EE +E+ E K
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 27.7 bits (62), Expect = 0.64
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEK 165
EEE E+E+E E+E+E E++ E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 27.3 bits (61), Expect = 0.85
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQK 169
EEE++E+EEE E+E+E EE+ E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 26.9 bits (60), Expect = 1.1
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEE 162
EEE+ +EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 25.0 bits (55), Expect = 4.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 156 EEEKEEEEEKEEQKEEEEQKEE 177
EEEK E+EE+ E +EE E++ E
Sbjct: 22 EEEKREDEEENEDEEEGEEQSE 43
Score = 24.6 bits (54), Expect = 8.3
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEE 173
EEE+ ++EE+ E+EE+ E++ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
>gnl|CDD|226354 COG3833, MalG, ABC-type maltose transport systems, permease
component [Carbohydrate transport and metabolism].
Length = 282
Score = 31.5 bits (72), Expect = 0.20
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 13 LTSPDNWTLAIGAAENASLLNLTNSSFVPKINGF 46
L P+N+TLA+G L + N F
Sbjct: 222 LRDPENYTLAVG------LQSFLNGPQNTNWGLF 249
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 31.6 bits (72), Expect = 0.21
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK-----EEEEQKEEQQIS 181
GE + +E E E+ EEE +E+ +K EK E+ +E K + E++EE+Q+
Sbjct: 85 GEQGLQRKLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQME 143
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 31.9 bits (72), Expect = 0.21
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
++N +E E E E + + + E++K EE+K + +Q+ + + R
Sbjct: 88 VNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKER 139
Score = 30.8 bits (69), Expect = 0.45
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
N EE E E+E + + + K+E+++ EE++ E +++ R+A
Sbjct: 89 NNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIAS 142
Score = 28.8 bits (64), Expect = 2.0
Identities = 8/47 (17%), Positives = 29/47 (61%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E +S ++ E E +++ ++++++ +E++ E ++Q + E+++
Sbjct: 93 EFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKER 139
Score = 28.1 bits (62), Expect = 3.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
GE + E E E + + + E+++ EE+K E +Q+ + E+
Sbjct: 91 GEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEK 137
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit
genes have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing
a TATA box in their promoter region. The exact function
of SURF2 is unknown.
Length = 244
Score = 31.4 bits (71), Expect = 0.21
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+E+ +E+++ E ++E+E E E E ++K +K+ +
Sbjct: 186 GKEQNGDEDDDFETDDEDEMEVESPELQQKRSKKQSGSLTK 226
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 31.9 bits (73), Expect = 0.22
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE--------EQKEEEEQKEE 177
+ G + ++ EE +E E E + E EKE + E++EKE + KE + E
Sbjct: 388 EAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELE 447
Query: 178 QQISRRVADKD 188
+++ V + D
Sbjct: 448 KELEAEVDEDD 458
Score = 30.7 bits (70), Expect = 0.52
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEE-EKEEEEEKEEQKEEEEQKEE 177
KPE E E E+E E E++EKE++ E + +E E +KE E + +E
Sbjct: 397 IDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDE 456
Query: 178 QQISRRVAD 186
I+ VA
Sbjct: 457 DDIAEVVAR 465
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 31.4 bits (71), Expect = 0.23
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 16/59 (27%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEE----------------EEKEEQKEEEEQKEEQ 178
EEE+E E EEEE EEEEE + E + E +E+E + +E+ EE+
Sbjct: 8 EEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEE 66
Score = 30.7 bits (69), Expect = 0.34
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 23/76 (30%)
Query: 136 EEEEEEEENEEEEKEEEEEKE----------------EEKEEEEEKEEQKE-------EE 172
EEEEEE EEEE + E++ E +E+E E KE+ E EE
Sbjct: 14 GEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRKAEE 73
Query: 173 EQKEEQQISRRVADKD 188
++E +I K+
Sbjct: 74 RKRETLKIVEEEVKKE 89
Score = 29.5 bits (66), Expect = 0.96
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 18/68 (26%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEE------------------KEEQKEEEEQKEEQQ 179
E EEE+ EE+EEE E+EEE + E++ +E ++E ++K ++
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEE 65
Query: 180 ISRRVADK 187
++R A++
Sbjct: 66 EAKRKAEE 73
Score = 29.1 bits (65), Expect = 1.2
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E E E EEE+E EE+EEE E+EE+ + E+ E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDME 34
Score = 28.7 bits (64), Expect = 1.7
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK---EEQKEEEEQKEEQQISRRVADK 187
T +E E E E+ +EE + K EE++ E K EE K+E E K+ + D
Sbjct: 46 DRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDD 105
Query: 188 D 188
Sbjct: 106 V 106
Score = 28.7 bits (64), Expect = 1.9
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E E EEE E EE+EEE EEEEE + + + E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDME 34
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 31.6 bits (72), Expect = 0.24
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
EEEE EEEE+EEEEE E E Q
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQ 433
Score = 30.8 bits (70), Expect = 0.36
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EEEEE+EEE+EEEEE + E Q
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQ 433
Score = 30.0 bits (68), Expect = 0.69
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 137 EEEEEEENEEEEKEEEEEKEE 157
EEEEE EEEE+EEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAE 423
Score = 29.7 bits (67), Expect = 0.82
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEE 158
EEEEEE EEEE+EEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 29.7 bits (67), Expect = 0.94
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQ 168
E E+EEEEE+EEE+EEE E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 29.3 bits (66), Expect = 1.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E+ EE+EEE+EEEEE+EE E ++
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQ 433
Score = 29.3 bits (66), Expect = 1.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
EEEE+EEEEE+EEE E E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 28.5 bits (64), Expect = 2.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 149 KEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EEEE+EEE+EEEEE+ + E Q+
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQL 434
Score = 28.1 bits (63), Expect = 2.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
EE+EEEEE+EEE+EE + E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 28.1 bits (63), Expect = 2.8
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 135 QEEEEEEEENEEEEKEEEE 153
+EEEEEEEE EEEE+ E
Sbjct: 405 EEEEEEEEEEEEEEEPVAE 423
Score = 27.3 bits (61), Expect = 4.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKE 160
E + +EEEEEEEE EEEE E E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 30.9 bits (70), Expect = 0.24
Identities = 9/48 (18%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEE-EEEKEEQKEEEEQKEEQQ 179
N + + +++ EK + K + E ++ ++K+EE++K +++
Sbjct: 29 NPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKK 76
Score = 29.8 bits (67), Expect = 0.76
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
N +++ E + + + + +K +EK+E+K++ ++K
Sbjct: 33 YNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKK 76
Score = 29.4 bits (66), Expect = 1.0
Identities = 9/50 (18%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 133 NTQEEE----EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
N+Q++ + + + E+ ++ +E+KEE+++ +++K + Q
Sbjct: 37 NSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVPLQVNPAQ 86
Score = 26.7 bits (59), Expect = 7.7
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E E+ + N+++ E K +++ EK + + + E
Sbjct: 17 ESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAER 57
>gnl|CDD|237147 PRK12586, PRK12586, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 145
Score = 30.5 bits (69), Expect = 0.24
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
NE+ E + + +++EE +K Q +
Sbjct: 117 SSNEQNSTEALQLRAKKREEHRKKWYQND 145
Score = 28.2 bits (63), Expect = 1.7
Identities = 4/40 (10%), Positives = 12/40 (30%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E+ E + ++ EE ++ + +
Sbjct: 106 NDAHTHASILLSSNEQNSTEALQLRAKKREEHRKKWYQND 145
Score = 26.7 bits (59), Expect = 5.0
Identities = 5/43 (11%), Positives = 18/43 (41%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
++ + + E+ E + +++EE +++ Q +
Sbjct: 103 YRKNDAHTHASILLSSNEQNSTEALQLRAKKREEHRKKWYQND 145
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 31.6 bits (72), Expect = 0.25
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ EE EE E EE+K ++E + E E +E EE+ + ++ +
Sbjct: 824 IQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVE 876
Score = 31.2 bits (71), Expect = 0.31
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EE E NEE++ ++E K E E +E +EE + E K E
Sbjct: 829 MLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNE 873
Score = 28.9 bits (65), Expect = 2.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 129 EHISNTQEEEEE-EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + EE E EE + ++E + E E +E EEE + E + + E
Sbjct: 827 EEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVE 876
Score = 28.1 bits (63), Expect = 3.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E EEE + + + EE EE E E+++ +Q+ + ++S
Sbjct: 813 ESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELS 855
Score = 27.7 bits (62), Expect = 4.1
Identities = 9/56 (16%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
VE + P+ + ++ + + +E K++E+ +++K++ E+ +E+
Sbjct: 873 EFVEFKNDPKKL---NKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEEA 925
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 30.0 bits (68), Expect = 0.25
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 146 EEEKEEEEEKEEEKEEEEE 164
E ++EE+KEEE+EE ++
Sbjct: 78 AAEAKKEEKKEEEEEESDD 96
Score = 28.8 bits (65), Expect = 0.68
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQ 168
E +KEE+KEEEEE+ +
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDD 96
Score = 27.7 bits (62), Expect = 1.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 153 EEKEEEKEEEEEKEEQKEEEEQ 174
E ++EE+KEE++EE +
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDD 96
Score = 27.7 bits (62), Expect = 1.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 140 EEEENEEEEKEEEEEKEEE 158
E +EE+KEEEEE+ ++
Sbjct: 78 AAEAKKEEKKEEEEEESDD 96
Score = 26.9 bits (60), Expect = 3.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 135 QEEEEEEEENEEEEKEEEEE 154
E ++EE +EEE+EE ++
Sbjct: 77 AAAEAKKEEKKEEEEEESDD 96
Score = 26.1 bits (58), Expect = 6.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 136 EEEEEEEENEEEEKEEEEE 154
E ++EE+ EEEE+E +++
Sbjct: 79 AEAKKEEKKEEEEEESDDD 97
Score = 25.7 bits (57), Expect = 7.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 157 EEKEEEEEKEEQKEEEEQKEEQ 178
E +KEE+KEEEE++ +
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDD 96
Score = 25.4 bits (56), Expect = 9.1
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 145 EEEEKEEEEEKEEEKEEEEE 164
E K+EE+++EEE+E +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 31.6 bits (72), Expect = 0.26
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E+ + ++E + EEK EE + EK +E E + ++
Sbjct: 311 RKPFEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTP 357
Score = 28.9 bits (65), Expect = 1.7
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE+ EE + EK +E E + E+ ++E++ + Q
Sbjct: 324 DLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDPQ 368
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 30.6 bits (69), Expect = 0.26
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E+E +E + EEE++E +E E +EE + K + EEE + Q I
Sbjct: 24 EDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGI 68
Score = 28.3 bits (63), Expect = 1.5
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ--------KEEEEQKEEQQ 179
S+ +EE+EE +E E +EE + K + EEE E Q K++EE +EE Q
Sbjct: 30 SDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEEEPQ 85
Score = 27.2 bits (60), Expect = 3.2
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+G + + + +E+ +E EEE++E ++ E +EE+K + + EE++
Sbjct: 9 VGNQLKDVKGMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEER 61
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase (metG)
is a class I amino acyl-tRNA ligase. This model
describes a region of the methionyl-tRNA synthetase that
is present at the C-terminus of MetG in some species (E.
coli, B. subtilis, Thermotoga maritima, Methanobacterium
thermoautotrophicum), and as a separate beta chain in
Aquifex aeolicus. It is absent in a number of other
species (e.g. Mycoplasma genitalium, Mycobacterium
tuberculosis), while Pyrococcus horikoshii has both a
full length MetG and a second protein homologous to the
beta chain only. Proteins hit by This model should
called methionyl-tRNA synthetase beta chain if and only
if the model metG hits a separate protein not also hit
by This model [Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 30.5 bits (69), Expect = 0.26
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++K EE + + K++E++ E +K E QKE I
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKETITID 35
Score = 29.7 bits (67), Expect = 0.52
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+++ EE + + ++KE++ E E+ E QKE + +++ RV
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKETITIDDFEKVDLRVG 45
Score = 26.6 bits (59), Expect = 5.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+++ EE + K++E++ E EK E +KE
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKET 31
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 31.0 bits (70), Expect = 0.26
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
K E Q +H+S Q+E E EE+ ++++ EEK+E E+E E +E E + ++ ++
Sbjct: 2 KDEHNQEHDHLS--QKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEKY 59
Query: 181 SRRVAD 186
R AD
Sbjct: 60 LRVHAD 65
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 31.1 bits (70), Expect = 0.27
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EEE + + ++K EEE KE+ + E+ K+EE+ ++
Sbjct: 87 EEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKE 129
Score = 28.7 bits (64), Expect = 1.4
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E + +E E+ + + +EK E+E E+ KE E+ E K E + E+ +
Sbjct: 160 EDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVE 219
Score = 28.0 bits (62), Expect = 3.2
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
++EE+ +E + +E+K E+ ++++E E + EE + S V +
Sbjct: 116 IVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEE 167
Score = 27.6 bits (61), Expect = 3.6
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E+ + E K+EE+ +E + +E+K E+ + ++E
Sbjct: 105 VKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETL 150
Score = 27.6 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
T++ EE E+ K++ +EK E+E E+ KE ++ E K E
Sbjct: 159 TEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAE 202
Score = 27.2 bits (60), Expect = 4.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 112 PTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEK-EEEKEEEEEKEEQKE 170
+ E S+ E E + + + E ++ EE+ +EE+ E+ K +EE ++
Sbjct: 174 KQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPV 233
Query: 171 EEEQK 175
EE+Q+
Sbjct: 234 EEQQE 238
Score = 26.8 bits (59), Expect = 6.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EE E+ EE E+ K++ KE+ E+E + +E ++ +
Sbjct: 156 HEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAE 197
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 30.1 bits (68), Expect = 0.28
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEE------KEEEKEEEEEKEEQKEEEEQKEE 177
S + + +EE+E EE+ EE K + +E E+E+EE++E ++K+
Sbjct: 54 GSRNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQKKKS 106
Score = 27.8 bits (62), Expect = 2.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEE----------KEEQKEEEEQKEEQQ 179
N K +EE++ EE+ EE +E +KEEEE++E Q
Sbjct: 56 RNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQ 102
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 31.3 bits (72), Expect = 0.28
Identities = 8/50 (16%), Positives = 9/50 (18%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
EE E E E E E + A
Sbjct: 78 EEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKA 127
Score = 29.8 bits (68), Expect = 0.84
Identities = 9/45 (20%), Positives = 9/45 (20%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
EEE E E E E E A
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPA 121
Score = 29.0 bits (66), Expect = 1.6
Identities = 8/49 (16%), Positives = 10/49 (20%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
EEE E E + E E + A
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAA 125
Score = 28.6 bits (65), Expect = 1.7
Identities = 8/42 (19%), Positives = 8/42 (19%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPA 118
Score = 27.1 bits (61), Expect = 7.2
Identities = 9/42 (21%), Positives = 10/42 (23%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EEE E E E E E + A
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPA 118
Score = 26.7 bits (60), Expect = 8.6
Identities = 7/42 (16%), Positives = 9/42 (21%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
EEE + E E E E +
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPA 118
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 31.2 bits (71), Expect = 0.29
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
PE + + + E E E + EE E EE E+ E++ + K
Sbjct: 197 PPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK 251
Score = 30.5 bits (69), Expect = 0.43
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E E E E E +E + EE E+ EEE K
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKP 249
Score = 29.3 bits (66), Expect = 1.3
Identities = 12/44 (27%), Positives = 14/44 (31%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E +E E E E E E EE E EE +
Sbjct: 199 EPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAP 242
Score = 28.9 bits (65), Expect = 1.3
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E +E E E + + + EE E EE E E++
Sbjct: 201 PEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEE 245
Score = 28.2 bits (63), Expect = 2.7
Identities = 12/45 (26%), Positives = 16/45 (35%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E E E + E EE E E+ E EEE +
Sbjct: 205 VDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKP 249
Score = 28.2 bits (63), Expect = 2.7
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E E E E E EE E +E + EE+ +
Sbjct: 204 TVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNK 248
Score = 27.8 bits (62), Expect = 3.4
Identities = 12/54 (22%), Positives = 17/54 (31%)
Query: 112 PTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
P + E + E EE E EE E+ EE+ + K
Sbjct: 198 PEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK 251
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 30.8 bits (70), Expect = 0.29
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
+ EEE EE EE +E E+ KEE K E EE E+ + +KE ++ +R+
Sbjct: 14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63
Score = 28.5 bits (64), Expect = 1.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E EEE EE +E EE E+ KEE + + E+ EE ++
Sbjct: 12 LREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRK 51
Score = 27.0 bits (60), Expect = 4.7
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++ E EEE +E EE EE E+ +E+ +++ EE +E + + + A++
Sbjct: 9 KKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAER 58
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 29.1 bits (66), Expect = 0.30
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE +E EE+K +++EE+E ++E ++ E + ++
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKR 79
Score = 27.6 bits (62), Expect = 1.1
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEE-EEEKEEQKEEE 172
EE EE EE+++++EEEKE KE + E+ E ++
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 26.8 bits (60), Expect = 2.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 155 KEEEKEEEEEKEEQKEEE--EQKEEQQISRRVADKD 188
KEE EE EEK+ ++EEE +KE ++ R A K
Sbjct: 44 KEEILEEIEEKKRKQEEEKERRKEARKAERAEARKR 79
Score = 26.8 bits (60), Expect = 2.4
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
+E EE++ + EEE++ +E ++ E+ E ++
Sbjct: 49 EEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 26.8 bits (60), Expect = 2.5
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 149 KEEE-EEKEEEKE-EEEEKEEQKEEEEQKEEQQISRRVA 185
KEE EE EE+K +EEEKE +KE +K E+ +R+
Sbjct: 44 KEEILEEIEEKKRKQEEEKERRKEA--RKAERAEARKRG 80
Score = 25.7 bits (57), Expect = 6.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
EE E EE+K ++EE++E ++E + E + +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKR 79
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 31.3 bits (71), Expect = 0.32
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEE---EKEEEEEKEEQKEEEEQKEEQQ 179
+ +E E++ E E+ KE+E+ K+E E EE +E+E K+ E +KE Q+
Sbjct: 521 SALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQE 572
Score = 29.4 bits (66), Expect = 1.1
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ T E +EE N EK EKE E++ E ++ KE+E+ K+E
Sbjct: 501 QAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKE 547
Score = 29.4 bits (66), Expect = 1.2
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E Q EH+ +E+E+ ++ E+E EE +E+E K+ E EKE Q+ + K+E
Sbjct: 523 LEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKE 580
Score = 29.0 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E+ EKE E++ E ++ +E+E+ K+E EQ+ E+ R
Sbjct: 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558
Score = 28.6 bits (64), Expect = 2.3
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
Q+ E E+ +E+EK ++E ++E +E +E + +K E E++ ++ +
Sbjct: 529 QKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEAL 574
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 29.8 bits (67), Expect = 0.34
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ QEE EE E+ EK E +KE E E + +E+Q + + E
Sbjct: 49 SMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGE 93
Score = 28.3 bits (63), Expect = 0.98
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+EE E+E+ E+ E ++E E E K E+ + + K + VA K
Sbjct: 51 QEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASK 101
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 31.2 bits (70), Expect = 0.35
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E E EE E E+E E E E+ E E E ++ E ++ E ++ R
Sbjct: 461 ERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDR 506
Score = 29.7 bits (66), Expect = 1.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E++ E E EE+E E + E+ E E E ++ E E+ E ++ R D+
Sbjct: 456 EKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDR 506
Score = 27.0 bits (59), Expect = 6.8
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ I + EE E E E E+ E E E E+ E E E + E ++ + ++ R D+
Sbjct: 458 KRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLD--RLERERVDR 514
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 31.3 bits (71), Expect = 0.36
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE +E E E E +E+ EE+ ++++ QKEEE++ Q+
Sbjct: 2572 AKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQE 2618
Score = 27.9 bits (62), Expect = 4.0
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E ++ E+ + EE +E E+ E E +E+ +EE+ +Q+E +++EEQ+
Sbjct: 2557 EIKELENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKA 2614
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 30.8 bits (70), Expect = 0.37
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E EE +E+ E+ E+ E +E+ +++ ++ K+ ++
Sbjct: 462 EAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDT 505
Score = 30.8 bits (70), Expect = 0.40
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E I + EE ++ E EE +E+ E+ E+ E +EE +++ +++ +
Sbjct: 445 EEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIP 501
Score = 30.4 bits (69), Expect = 0.61
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E E E+ E+ E+ E +EE +KE K+ ++ E
Sbjct: 462 EAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVD 504
Score = 29.3 bits (66), Expect = 1.3
Identities = 14/71 (19%), Positives = 31/71 (43%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ ++ +S +E E+ E E+ E +EE ++E ++ +K + + E
Sbjct: 451 SLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLE 510
Query: 177 EQQISRRVADK 187
E I+ +K
Sbjct: 511 ELGINEETYEK 521
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 30.4 bits (69), Expect = 0.37
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E EEE E EE+KEEEE K E+ E K+++ E++++++E
Sbjct: 138 DESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 30.0 bits (68), Expect = 0.54
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++E EEE E EE++EEEE + +E E ++++ E+++KE++
Sbjct: 137 EDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 29.6 bits (67), Expect = 0.73
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E S+ +E EE EE+ EEEE + EE E +++E ++++KE+E
Sbjct: 137 EDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 28.8 bits (65), Expect = 1.1
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E+E E E EE EE++E+EE K EE E K++E +K++++
Sbjct: 136 DEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKE 178
Score = 27.3 bits (61), Expect = 3.6
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E +E+E EEE E+ EE++EEEE + +E E ++++ ++ +K
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 26.5 bits (59), Expect = 7.6
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E +E+E EE E+ EE+++EEE + EE E +++E +++++
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKK 177
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 30.3 bits (69), Expect = 0.39
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++ + + ++ E + E+ K+ EE EE E EE ++ ++E ++ + +
Sbjct: 73 KLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAE 125
Score = 30.3 bits (69), Expect = 0.45
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++E EE ++ E + + E+ ++ +EE EE+ E EE +Q E++
Sbjct: 75 KKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Score = 29.1 bits (66), Expect = 0.94
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
++E EE + E + + EK ++ EE E+ + EE ++ E+++ +
Sbjct: 72 EKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Score = 28.7 bits (65), Expect = 1.2
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + EE ++ + + E+ ++ EE EE E E+ ++ E++ ++
Sbjct: 72 EKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKL 122
Score = 27.6 bits (62), Expect = 2.9
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
I+ Q + E+ ++ EE +E E EE K+ E+E ++ K E E+ E+
Sbjct: 85 IAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEKYEK 131
Score = 26.8 bits (60), Expect = 5.2
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ + E+ ++E +E ++ E + + E+ ++ +EE E++ E
Sbjct: 64 LNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTEL 108
Score = 26.8 bits (60), Expect = 6.3
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E+ ++ E EE E EE ++ ++E ++ + + E+ E+ + ++I
Sbjct: 93 EKLKKGREETEERTELLEELKQLEKELKKLKAELEKYEKNDPERI 137
Score = 26.4 bits (59), Expect = 7.0
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEK--EEEKEEEEEKEEQKEEEEQKEE 177
T+ E+ ++E E +++ E + E+ K+ EE EE+ E E+ ++
Sbjct: 68 KTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQ 114
Score = 26.0 bits (58), Expect = 9.4
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E+ ++ EE K+ E + + E+ ++ E+ EE + E+
Sbjct: 68 KTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEE 111
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 30.8 bits (69), Expect = 0.40
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
+E EEE+ + E + E EEE EEE+ E + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 30.8 bits (69), Expect = 0.43
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
EE EEE+N+ E + E E+E+E+EE E + +
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 28.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E EE E E+ ++E + + EE++EEEE E E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 27.3 bits (60), Expect = 4.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
E EE EE + + + + E EEE EEEE + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 26.6 bits (58), Expect = 9.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E EE EEE+ + E E +EE+EE+E + + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
>gnl|CDD|217206 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is found in
chromatin proteins.
Length = 158
Score = 30.0 bits (68), Expect = 0.40
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E + +EE ++ E + + EKE+Q++EE+ +E Q +R
Sbjct: 115 YIAERKAREEVRQRAELQRQLAEKEKQEKEEKLRELAQRARE 156
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
E + EE + E +++ ++E++EKEE+
Sbjct: 115 YIAERKAREEVRQRAELQRQLAEKEKQEKEEK 146
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 29.7 bits (68), Expect = 0.41
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E EEEE++E + EEE EE + E EE+ E+ +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 28.6 bits (65), Expect = 0.95
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE+E++E +E +EE EE E + EEE ++ +
Sbjct: 4 EEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 27.8 bits (63), Expect = 2.0
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
EE++E E EEE EE E + EE+ EE K
Sbjct: 6 EEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 27.4 bits (62), Expect = 2.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
EEEE++E E E+E EE + E +EE EE +
Sbjct: 4 EEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 27.4 bits (62), Expect = 2.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E EEEE+ E + EEE EE + E E++ E+ + + KD
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKLLLLPKD 42
Score = 27.4 bits (62), Expect = 2.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E E EE+++ E +EE +E E E EE+ EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 26.7 bits (60), Expect = 4.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E EEE+ E E EEE EE E + E++ EE K
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 26.7 bits (60), Expect = 4.3
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E EEEE++E E EEE +E E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 26.3 bits (59), Expect = 6.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E EEE+++E + E+E EE + E +EE E+ +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 30.6 bits (69), Expect = 0.42
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E T E + +E + + +E+E EEE+E + EE + E ++
Sbjct: 376 EDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFEV 427
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.8 bits (70), Expect = 0.43
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 115 LVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
LVE + E + E + +E E E EE++E EE E E E + E+K E
Sbjct: 504 LVEAEDRIERLE--ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561
Query: 175 KEEQQ 179
+ E++
Sbjct: 562 EAEEE 566
Score = 29.2 bits (66), Expect = 1.3
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E I+ +E EE+ E EE +E E E E EE+ E + EEE ++ +++
Sbjct: 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEV 574
Score = 29.2 bits (66), Expect = 1.5
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
T EE+ E E E E E + EEK E + E++ EE ++E +++ ++A+
Sbjct: 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAE 583
Score = 27.7 bits (62), Expect = 5.0
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE-----QQISRR 183
H+ +E+ E EE E E ++ EEE EE +E E E+ E E++ E + +
Sbjct: 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEL 524
Query: 184 VADK 187
+A++
Sbjct: 525 IAER 528
Score = 26.9 bits (60), Expect = 7.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
++ EE E EE E+ +E +E +E EE EE+ E+ E E
Sbjct: 215 LAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEA 258
Score = 26.5 bits (59), Expect = 9.4
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
EE EE EE E E E EE +E E++ E+ EE E +E +++ R D
Sbjct: 355 EERAEELREEAAELESELEEAREAVEDRREEIEELE-EEIEELRERFGD 402
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 30.7 bits (70), Expect = 0.43
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E+ E E EE E E+EK EE++EEEEKE E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 29.9 bits (68), Expect = 0.70
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++ EEE EE + E+E+ EE+ EEEE++ + ++
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQ 39
Score = 29.5 bits (67), Expect = 0.89
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
E+ EEE E E EKE+ EE++EE+E+E E K
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFERLK 38
Score = 28.8 bits (65), Expect = 1.6
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E+ EEE +E E EKE+ +EE+EE+E++ E K
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLK 38
Score = 26.5 bits (59), Expect = 9.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEE 162
MG +E EE E E E+ E+E+EEE++E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 30.8 bits (70), Expect = 0.43
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E EEE EE E ++ E + K+E +E E Q E E+K E+
Sbjct: 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
Score = 30.8 bits (70), Expect = 0.47
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEE--EEKEEQKEEEEQKEEQQ 179
+ I E+ E+EEE +E EE EE E+E K E KE E + EE +
Sbjct: 716 RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
Score = 30.0 bits (68), Expect = 0.70
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
QE +E+ + +E+ K E+E E ++EE EE+ EE E SR
Sbjct: 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
Score = 29.7 bits (67), Expect = 1.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ E + + + E + K+E +E E + E E K E+ E + +K+ +++S A
Sbjct: 866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924
Score = 29.3 bits (66), Expect = 1.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E E++ E++ E+E +E +E+ + +EQ + E++ E
Sbjct: 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
Score = 28.9 bits (65), Expect = 1.7
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++ E +S+ ++E E + +E + EE EE+ + EE E +
Sbjct: 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
Query: 186 DK 187
K
Sbjct: 801 SK 802
Score = 28.9 bits (65), Expect = 1.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
I ++E E+ E+ EE+ KE EE EE+ E++ E + E ++ E +I D
Sbjct: 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL 774
Score = 28.9 bits (65), Expect = 2.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
Q+ + +E EE EE+ ++E E + E +E E + E+ EE+ K E+ +
Sbjct: 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781
Score = 28.5 bits (64), Expect = 2.8
Identities = 10/59 (16%), Positives = 28/59 (47%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
I E+E E+E +E +E+ + +E+ + E++ E +++++ + +
Sbjct: 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEL 873
Score = 28.1 bits (63), Expect = 3.1
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E + +E+ E+ E K E +E E EE EE + EE E ++S
Sbjct: 737 ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790
Score = 27.7 bits (62), Expect = 4.0
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + + I QE+ + +E + ++E E +KEE EE+ E+ E + E +
Sbjct: 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
Score = 27.7 bits (62), Expect = 4.1
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ + E+E E E+ EE + E + ++ E E+ E++ EEE+K +++ A+
Sbjct: 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL 362
Score = 27.7 bits (62), Expect = 4.5
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 126 QMGEHISNTQEEEEE-EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE---------QK 175
++ E + +EE E+ E EE +KE E ++E K+ E+ E+ K E Q+
Sbjct: 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413
Query: 176 EEQQISRRVAD 186
E Q++S +AD
Sbjct: 414 ELQRLSEELAD 424
Score = 27.7 bits (62), Expect = 4.7
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E + +E+ + E+ E ++EE EEE EE E E +++ A
Sbjct: 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
Score = 27.3 bits (61), Expect = 5.5
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 134 TQEEEEEEEENEEEEKE----EEEEKEEEKEEEE-----EKEEQKEEEEQKEEQQISRRV 184
T E+E E+E +E +++ +E+ K EKE E E+ E++ EE + + + R+
Sbjct: 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884
Query: 185 AD 186
D
Sbjct: 885 GD 886
Score = 27.0 bits (60), Expect = 7.7
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ E + +KE +E + + +E E + EE + + E+K ++ +
Sbjct: 876 ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
Score = 27.0 bits (60), Expect = 7.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
EE EE E+ E ++ E + K+E+ E E Q E +
Sbjct: 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 30.5 bits (69), Expect = 0.44
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
S+P T + + S E E + + + E + + + EEE++ E+
Sbjct: 57 SRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEE 115
Score = 27.1 bits (60), Expect = 5.9
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
S+ EE+ + + + + K E EE++E EE +
Sbjct: 74 SSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 30.4 bits (69), Expect = 0.45
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEE-KEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E +E EE EE+ E E EEE KEE +K ++ +K + QI R +
Sbjct: 55 DEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEE 107
Score = 28.8 bits (65), Expect = 1.7
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+S ++E EEE E+ E+ EE +E KE EE EE E + E++ + K
Sbjct: 30 LSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKK 86
Score = 28.1 bits (63), Expect = 2.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ EE EE+ E E EEE KEE ++ +E E+ + + E++
Sbjct: 57 AKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEE 107
Score = 28.1 bits (63), Expect = 2.7
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 126 QMGEHISNTQEEEEEEEENEEEE-KEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ E I +E+ E E EEE KEE +K +E EK + + E EQ+E
Sbjct: 56 EAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEE 107
Score = 27.7 bits (62), Expect = 4.0
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+V S E ++ E E+ EE +E +E EE E++ + E +EE KEE +K
Sbjct: 27 FKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKK 86
Query: 176 EEQ 178
++
Sbjct: 87 TDE 89
Score = 27.3 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ +E+E EE+EE+ E+ E+ +E KE +E EE E
Sbjct: 28 KVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIV 72
Score = 27.3 bits (61), Expect = 5.6
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E + +EE +EE + +E EK + + E E++E ++E E EE
Sbjct: 61 IEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEE 118
Score = 26.9 bits (60), Expect = 5.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+E EEEE + E+ EE E ++ EE +E+ E E EE+
Sbjct: 29 VLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEE 82
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 29.6 bits (67), Expect = 0.45
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEE-------EEEKEEQKEEEEQKEEQQISRRVA 185
EE + E E++EKE++++K++E E+ E++KEEQ + ++ EE + RV
Sbjct: 65 AAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDK--ERVE 122
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 30.6 bits (69), Expect = 0.46
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
EE + +E+E EE E + ++E+E E E+ E K E I+
Sbjct: 236 EERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPESYIT 278
Score = 30.2 bits (68), Expect = 0.66
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
W + E + ++E+E EE E + +E+E E+ ++ E + E
Sbjct: 233 WNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 28.3 bits (63), Expect = 2.8
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
PET + + E E E EE+ + +E+E EE E + E++
Sbjct: 205 PETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEH 262
Score = 27.5 bits (61), Expect = 5.1
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
T +++++EE E+ E E EE+ +E++ EE + +
Sbjct: 207 TSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDE 261
Score = 27.2 bits (60), Expect = 5.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
EE + +E++ EE + + +E+E E+ ++ E + E
Sbjct: 236 EERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
>gnl|CDD|218267 pfam04791, LMBR1, LMBR1-like membrane protein. Members of this
family are integral membrane proteins that are around
500 residues in length. LMBR1 is not involved in
preaxial polydactyly, as originally thought. Vertebrate
members of this family may play a role in limb
development. A member of this family has been shown to
be a lipocalin membrane receptor.
Length = 419
Score = 30.5 bits (69), Expect = 0.47
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 62 VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNL----SIADLMVLLVCTPTVLVE 117
+L +++L +L VI S+ + + FL + S L++LL+ T LV
Sbjct: 127 LLLALLLL-VLLIVASA--VIDNSESLSDLWENFLPYVYSCSSFWGLLLLLILTGYGLVR 183
Query: 118 VNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ S W++ + E E+ E E + + E E+ EQ+ + E
Sbjct: 184 LPSS--LWKLLVRYFRAAKLEREKVEAESKVDDILESVSLLPRLLEDVNEQRSKSAT-EL 240
Query: 178 QQISRRVAD 186
+++R +
Sbjct: 241 GKLTRELNL 249
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 30.5 bits (68), Expect = 0.49
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
N +E EE EEN EE EE E+ E+ EE EE +E ++ ++
Sbjct: 1087 NVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEE 1133
Score = 29.4 bits (65), Expect = 1.3
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
N +E EE EEN EE EE E+ E+ EE +E EE ++ ++
Sbjct: 1091 NVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
Score = 29.4 bits (65), Expect = 1.5
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
N +E EE EEN EE EE E+ E+ EE +E +E E+ E+ + D
Sbjct: 1068 NVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYD 1123
Score = 28.6 bits (63), Expect = 2.5
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 116 VEVNSKPETWQMGEHISNTQEEEEEE--EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+E + ++ E+I EE EE EEN EE +E EE EE EE +E +E E
Sbjct: 1061 IEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAE 1120
Query: 174 QKEEQQISRRVADKD 188
+ +++ + D
Sbjct: 1121 EYDDENPEEHNEEYD 1135
Score = 28.6 bits (63), Expect = 2.7
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
N +E EE EEN EE EE E+ +E+ EE +E +E E+ E+ + V +
Sbjct: 1041 NVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEE 1094
Score = 28.2 bits (62), Expect = 3.2
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+E EE EEN EE EE E+ E+ +EE EE +E E+ E+ + V +
Sbjct: 1039 EENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEE 1090
Score = 28.2 bits (62), Expect = 3.6
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 129 EHISNTQEEEEEE--EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E+I EE EE EEN EE EE E+ EE EE ++E +E EE EE
Sbjct: 1001 ENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEE 1051
Score = 27.8 bits (61), Expect = 4.0
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE EEN EE EE E+ E+ EE EE EE +++ +++ V + D
Sbjct: 988 EENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYD 1038
Score = 27.8 bits (61), Expect = 4.5
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
N +E EE +E EE EE E+ E+ EE EE EE E+ E+ + +
Sbjct: 1056 NIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEE 1109
Score = 27.8 bits (61), Expect = 4.7
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 116 VEVNSKPETWQMGEHISNTQEE--EEEEEENEEEEKEEEEEKEEEKEEE------EEKEE 167
+E N + + E I EE EE EEN EE EE EE EE EE EE E
Sbjct: 1057 IEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAE 1116
Query: 168 QKEEEEQKEEQQ 179
+ EE E +
Sbjct: 1117 ENAEEYDDENPE 1128
Score = 27.1 bits (59), Expect = 7.5
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 127 MGEHISNTQEEEEEE--EENEEEEKEEE-EEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E++ EE EE EEN EE EE EE EE EE +E +E E+ E+ I
Sbjct: 959 AEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEEN 1018
Query: 184 VADKD 188
V + D
Sbjct: 1019 VEEYD 1023
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 30.2 bits (68), Expect = 0.49
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
L +V PET Q E+ E+ E E + E+ E + E+ ++E+ + EE
Sbjct: 21 PLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEE 80
Query: 174 QKE 176
++E
Sbjct: 81 ERE 83
Score = 27.1 bits (60), Expect = 5.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E E+E +EE+E E+ E+ + E + EQ E + +QI + A
Sbjct: 30 ETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQ 77
Score = 26.7 bits (59), Expect = 6.6
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE-EQQISR 182
E +EE+E E+ E+ + E + E+ E + ++ E+E+ + E++ R
Sbjct: 30 ETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERER 84
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 30.4 bits (68), Expect = 0.49
Identities = 11/55 (20%), Positives = 18/55 (32%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E E ++ +E EE E+ +EE +E E + D
Sbjct: 158 EERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDFAELYD 212
Score = 29.2 bits (65), Expect = 1.3
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E ++ E + + +E EE E+ +E+ EE E+ + ++
Sbjct: 158 EERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDF 207
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 30.4 bits (68), Expect = 0.49
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
Q +EE +E+ ++++ + E+ E + E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
Score = 29.2 bits (65), Expect = 1.3
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
+ + +EE +E ++++ + + E E E +
Sbjct: 50 PRSCQGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
Score = 26.9 bits (59), Expect = 6.7
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ +EE +EK ++++ + E + E E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 30.3 bits (68), Expect = 0.50
Identities = 11/54 (20%), Positives = 30/54 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++E +EEE + E+ E E+E+ ++ Q +++ E +++ +++ K+
Sbjct: 5 EKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKE 58
Score = 29.9 bits (67), Expect = 0.64
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E N E+ E E+E+ ++ + +++ +E E+ +QK ++++ E Q+
Sbjct: 13 EKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQE 63
Score = 28.3 bits (63), Expect = 1.7
Identities = 12/57 (21%), Positives = 32/57 (56%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
M E +EEE++ N ++ E E+E+ ++ + ++Q +E ++ +Q++ ++
Sbjct: 1 MEEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQK 57
>gnl|CDD|227199 COG4862, MecA, Negative regulator of genetic competence,
sporulation and motility [Posttranslational
modification, protein turnover, chaperones / Signal
transduction mechanisms / Cell motility and secretion].
Length = 224
Score = 30.1 bits (68), Expect = 0.50
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E + +E+ EE E+ EEK ++ EKEEQ +E E++ +
Sbjct: 89 DEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 28.5 bits (64), Expect = 1.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEE-EEKEEQKEEEEQKEEQQ 179
++ ++ E E ++ +E +E+ EE E+ EEK + E+EEQ +E +
Sbjct: 75 VTKSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAE 124
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 29.3 bits (66), Expect = 0.52
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
W+ G S +++ E + + +E ++E+ E EE E+ + EE +KE
Sbjct: 77 WKTGPIESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 28.9 bits (65), Expect = 0.88
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E E++ E ++ + +E +KEE E E+ EE + E+
Sbjct: 81 PIESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEM 125
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 30.4 bits (69), Expect = 0.52
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E++ EE ++ E E++ +E K+ +E E ++++ R
Sbjct: 81 KDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIR 131
Score = 26.9 bits (60), Expect = 6.2
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 137 EEEEEEENEEEEKEEEEEKEE----EKEEEEEKEEQKEEEEQKEEQQI 180
+ E + E K +E + E +E+ ++ EE E +
Sbjct: 96 KIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVAL 143
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 30.1 bits (68), Expect = 0.53
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
KP T + + + EEE++ +++K EE E + + EE ++
Sbjct: 61 KPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
Score = 29.0 bits (65), Expect = 1.3
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++ + E+E++ E +++K EE E + EE ++ S
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASAN 113
Score = 27.8 bits (62), Expect = 2.8
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+E+ EEE+ E + ++ EE E + + EE + +E I
Sbjct: 73 KEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDI 118
Score = 26.6 bits (59), Expect = 7.1
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EEE++ E+++++ EE E + EE + +E +
Sbjct: 77 TEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDN 120
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
++E+ EE++ E +++K EE E + + E+ + ++
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 30.4 bits (68), Expect = 0.56
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
EEE++ + ++ +E E E+ E+ + E+ E E+ +++Q S ++A
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSKLAS 464
Score = 30.4 bits (68), Expect = 0.63
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
IS + EEE+ ++ ++ E + EE E K EE + EE +R
Sbjct: 404 RFISTYSWADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQR 458
Score = 28.8 bits (64), Expect = 1.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
EEE++ ++ ++ + E EE E + EE E EE +EQ+ S+
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSK 461
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 30.4 bits (69), Expect = 0.57
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ E I + + E +E EEN E ++E E EE + EE+ +E EE
Sbjct: 71 DLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLD--EEKSFLDENLEELSE 123
Score = 27.0 bits (60), Expect = 8.8
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEE--KEEEEEKEEQKEEEEQKEEQ 178
+ +T + + E + EEE E KE EE E ++E + EE
Sbjct: 53 PLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEW 103
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 29.9 bits (68), Expect = 0.57
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
I EEE+E+++ KEE++ +EEKE+ EE
Sbjct: 89 PIYQYFEEEKEKKKAMS--KEEKKAIKEEKEKLEEP 122
Score = 28.8 bits (65), Expect = 1.5
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E+E+E++K KEE++ +E+KE+ E+
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 28.4 bits (64), Expect = 1.8
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEE 167
EEE E+++ +EEK+ KEE+E+ EE
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEE 121
Score = 28.4 bits (64), Expect = 2.2
Identities = 15/27 (55%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 152 EEEKEEEKE-EEEEKEEQKEEEEQKEE 177
EEEKE++K +EEK+ KEE+E+ EE
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEE 121
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 29.5 bits (66), Expect = 0.57
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E EE E + +E +E E + +E EEEE E + AD +
Sbjct: 63 AAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAE 117
Score = 29.1 bits (65), Expect = 0.81
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E E + +E +E+EE +E +E +E + E ++ +EE+ EE +
Sbjct: 87 EAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 28.4 bits (63), Expect = 1.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ + +E +EE E +E +E E + E EE EE+ EE E
Sbjct: 85 ADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 28.4 bits (63), Expect = 1.5
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E E E + +E +EEEE +E ++ ++ + E +E +EE+E+ E
Sbjct: 77 EAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 27.6 bits (61), Expect = 2.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E+ +E E + ++ +EEE+ +E +E E E EE EE+
Sbjct: 80 DADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEE 125
Score = 27.2 bits (60), Expect = 2.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E E + +E EEEE E E +E + + EE +++E+++
Sbjct: 85 ADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEE 128
Score = 27.2 bits (60), Expect = 3.8
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E + + +EE+E +E +E +E + + E+ +EEE +E +
Sbjct: 86 DEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 26.8 bits (59), Expect = 4.3
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + + +E+ +E E + +E +EE+E +E +E +E + + E
Sbjct: 70 AEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAE 119
Score = 26.5 bits (58), Expect = 6.7
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E E+ E + +E+ +E E + E +E++E + AD+
Sbjct: 60 KGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEA 114
Score = 26.1 bits (57), Expect = 7.7
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE E + +E+ E E ++ +EEE+ ++ +E E + +++
Sbjct: 74 EEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEE 125
Score = 26.1 bits (57), Expect = 9.0
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
G + T E EE + E+ +E E +E EE++ +E E
Sbjct: 61 GPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDET 110
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 30.2 bits (69), Expect = 0.58
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEK--EEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E ++ EE E E +EE EE + +E E E +E+K ++ + + R +A
Sbjct: 381 EELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAF 440
Query: 187 K 187
K
Sbjct: 441 K 441
Score = 26.8 bits (60), Expect = 7.4
Identities = 8/53 (15%), Positives = 21/53 (39%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE EE +E E E +E++ ++ + + + + + + +
Sbjct: 399 EETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLE 451
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 30.6 bits (69), Expect = 0.58
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E+E EEE + ++EEE E EEK + KEE
Sbjct: 395 KRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEE 439
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 30.2 bits (69), Expect = 0.59
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEE--EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
K W + I EE EE E E E ++ +E+ +E EEE ++ +++ +++
Sbjct: 322 KELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDD 380
Score = 27.9 bits (63), Expect = 2.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE +E E+ E EK E ++ +E+ + D D
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDD 371
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 29.7 bits (67), Expect = 0.60
Identities = 15/56 (26%), Positives = 36/56 (64%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
N + E+EE E+ +EE+E KEE++ +++E++++ ++K++Q+I + +
Sbjct: 84 NKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQEIIDELETSN 139
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 29.4 bits (67), Expect = 0.62
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEE-EEKEEEKEEEEEKEEQKEEEEQK 175
E + +E E +++E K E EK+ EK + + ++++ ++EE K
Sbjct: 48 NEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 26.0 bits (58), Expect = 9.2
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEE-KEEEKEE-EEEKEEQKEEEEQKEEQQISRRV 184
I++ EE ++ +E+ E +++E K EK E + EK + K E+++ ++++ R+
Sbjct: 44 ITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
>gnl|CDD|225468 COG2916, Hns, DNA-binding protein H-NS [General function prediction
only].
Length = 128
Score = 29.4 bits (66), Expect = 0.63
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EE E+EE+ +E +EEE E EE++E+ E I
Sbjct: 21 EEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLI 60
Score = 27.8 bits (62), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE E+EE+ ++ +EEE E EE++E+ R + KD
Sbjct: 21 EEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLIKD 62
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 29.1 bits (65), Expect = 0.63
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E E ++EE E+E+E +EEEE+K +++ +
Sbjct: 75 EATFMEIQKEERRSARMARLEDERELAREEEEEKRKKKKKNK 116
Score = 27.9 bits (62), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
T E ++EE E+E+E +EEEEEK ++K
Sbjct: 77 TFMEIQKEERRSARMARLEDERELAREEEEEKRKKK 112
Score = 27.2 bits (60), Expect = 2.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
Q+EE E E E +EEE+E+ ++K++ K
Sbjct: 82 QKEERRSARMARLEDERELAREEEEEKRKKKKKNK 116
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 30.1 bits (68), Expect = 0.64
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
S +E + EE+N+ +++E+K+EE + +EEK+E E E++ +E
Sbjct: 336 SPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 29.3 bits (66), Expect = 1.1
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
N QE + EE+ + +++E++KEE K +EE++E+ + E+ KE
Sbjct: 335 SSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 27.0 bits (60), Expect = 6.3
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKE-EEEEKEEQKEEEEQKEEQ 178
I+ +E + EE+ + +++EK+ EE + +E+K+E+ + E++
Sbjct: 330 IATRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKR 378
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 29.7 bits (67), Expect = 0.64
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + E E E ++ E ++ EE +E E+K+EE ++ Q+
Sbjct: 101 SQADRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQK 145
Score = 27.8 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E EE E+ + +E + + EE++E EK++++ E+ ++E
Sbjct: 105 RVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKE 146
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 30.0 bits (67), Expect = 0.66
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKE-EEEEKEEQKEEEEQKEEQQISR 182
N + E E E+E K+E+ +++ + E E+K++ +EE KE + S
Sbjct: 23 NLVDWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASV 73
Score = 28.5 bits (63), Expect = 2.0
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ E E +E+E K+E+ +E+ + + E++++ +++ + D
Sbjct: 26 DWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDAS 72
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 30.3 bits (69), Expect = 0.68
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E+E++ EE K E ++ E EK ++ ++ E R DKD
Sbjct: 440 AIEQEKKKAEEAKARFEARQAR--LEREKAAREARHKKAAEA---RAAKDKD 486
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 28.8 bits (65), Expect = 0.69
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E E E E EEE+E E E EE EE +
Sbjct: 17 EPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELD 56
Score = 28.4 bits (64), Expect = 1.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EE E E +EE EEE+E + E+EE EE
Sbjct: 12 AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEE 54
Score = 26.5 bits (59), Expect = 4.5
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EE + E +EE ++EEE + E++++
Sbjct: 12 AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEEL 51
Score = 26.1 bits (58), Expect = 6.5
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E EEE E+EEE E E+E+ ++ + +
Sbjct: 20 EPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDT 62
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 283
Score = 29.8 bits (67), Expect = 0.70
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ EEEE+E ++ +++ EE E Q+ +++E+
Sbjct: 151 DQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEE 196
Score = 27.5 bits (61), Expect = 3.8
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ + + E+EE+EE ++ ++Q E+ E QQI
Sbjct: 143 KFLRNKNNDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQI 188
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 30.3 bits (69), Expect = 0.70
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEE--EEKEEQKEEEEQKEE 177
T +E++ ++E E+ + EE E +++KE E K E
Sbjct: 487 TGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNE 532
Score = 27.6 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+EE ++ E +K++ EE E +EE E E+++E E + EE Q
Sbjct: 545 KEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQ 586
>gnl|CDD|205495 pfam13315, DUF4085, Protein of unknown function (DUF4085). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 101 and 269 amino
acids in length.
Length = 208
Score = 29.8 bits (67), Expect = 0.71
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+ Q+ +S + +EE EEE EEE+ + + KEE EE +E
Sbjct: 9 KEMQISGLLSFPESQEEWEEELREEEESGNDYLQSLKEEIEEIKE 53
>gnl|CDD|177574 PHA03278, PHA03278, envelope glycoprotein K; Provisional.
Length = 347
Score = 29.7 bits (67), Expect = 0.74
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 63 LCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTV----LVEV 118
L + +G + VPC + + T IF+ + +L +LL P E
Sbjct: 226 LGAQCALMGTVSVFFVPCAAVYPLYFKIITGIFVGIVICLELSLLLYPGPARKKAMGGEA 285
Query: 119 NSKPETWQMG 128
+ M
Sbjct: 286 AERKGGRVMS 295
>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway components
[Intracellular trafficking and secretion].
Length = 94
Score = 28.5 bits (64), Expect = 0.78
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E +EE + EE ++++++ + + ++E + E KE+
Sbjct: 45 DVKNELDEELKLEELDDKKKELTAELQATKEELDQLASELKED 87
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly related
to archaeal Holliday junction resolvase [Nucleotide
transport and metabolism].
Length = 175
Score = 29.3 bits (66), Expect = 0.79
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
Q+ E E NE + ++EEE K +E E++ EE +E+ +K I RV +
Sbjct: 43 QKAERERLVNEAQARKEEEWKLKEWIEKKI-EEAREDAVRKSRAVILGRVTE 93
Score = 27.4 bits (61), Expect = 3.6
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
EE ++ E E E + KEEE + +E E +K EE +++ + SR V
Sbjct: 39 EETLQKAERERLVNEAQARKEEEWKLKEWIE-KKIEEAREDAVRKSRAV 86
Score = 27.0 bits (60), Expect = 5.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E EE + E E+ E + ++EE + KE +++ E+ E + + A
Sbjct: 35 ARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEAREDAVRKSRA 85
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 29.5 bits (67), Expect = 0.80
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 146 EEEKEEEEE--KEEEKEEEEEKEEQKEE 171
E EKE+++ KEE+K +EEK++ +E
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 29.1 bits (66), Expect = 1.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEE 167
E E E+++ +EEK+ KEE+++ EE
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEE 122
Score = 29.1 bits (66), Expect = 1.2
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 152 EEEKEEEKE-EEEEKEEQKEEEEQKEE 177
E EKE++K +EEK+ KEE+++ EE
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEE 122
Score = 28.7 bits (65), Expect = 1.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEK 165
E E+E+ + KEE++ +EEK++ EE
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 27.5 bits (62), Expect = 3.7
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E E+E++K KEE++ +E+K++ E+
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 26.8 bits (60), Expect = 6.2
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 130 HISNTQEEEEEEEEN--EEEEKEEEEEKEEEKEE 161
I E E+E+++ +EE+K +EEK++ +E
Sbjct: 90 PIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|115071 pfam06390, NESP55, Neuroendocrine-specific golgi protein P55
(NESP55). This family consists of several mammalian
neuroendocrine-specific golgi protein P55 (NESP55)
sequences. NESP55 is a novel member of the chromogranin
family and is a soluble, acidic, heat-stable secretory
protein that is expressed exclusively in endocrine and
nervous tissues, although less widely than
chromogranins.
Length = 261
Score = 29.8 bits (66), Expect = 0.80
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+TQE E E E E +++ + +EEEEEKEE+K++ + + ++ +RR
Sbjct: 192 STQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPARR 242
Score = 27.9 bits (61), Expect = 3.3
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E E E EE E ++ ++ EEE+EE++EE++Q + + +D
Sbjct: 194 QEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPARRRD 244
Score = 27.5 bits (60), Expect = 3.7
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E E E E+ E +++ + EE+EE+KEEE+Q+ + ++ A +
Sbjct: 187 RRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPARR 242
Score = 26.8 bits (58), Expect = 7.5
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 134 TQEEEEEEEENEEEEKE--EEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ +E E E EE E+ +++ ++ E+EEEE++EE+++ K ++ RR
Sbjct: 192 STQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPARRR 243
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 29.0 bits (65), Expect = 0.81
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 118 VNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEK------EEEEEKEEQKEE 171
+N KPE ++ E Q +E++EE E + + E E+E K + E EK ++ EE
Sbjct: 47 LNQKPELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEE 106
Query: 172 EEQKEE 177
+EQ E
Sbjct: 107 QEQIPE 112
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 29.5 bits (67), Expect = 0.81
Identities = 9/49 (18%), Positives = 26/49 (53%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ + +T E E ++ EEE++ ++ E E+ ++ +++E++
Sbjct: 14 LKKEREDTIENVERKQALTEEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 28.0 bits (63), Expect = 2.2
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
T+EE + + E+ E+ ++ ++EEE
Sbjct: 32 TEEERQASADESSEDASEDGSDDDSDDDEEEP 63
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association with
mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 28.6 bits (64), Expect = 0.81
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE-QKEEEEQKEEQQISRRVAD 186
EEEEEEEE++ E+ +E+E +E E E+++ + + +KEE++ + +A+
Sbjct: 12 EEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEELAE 63
Score = 27.0 bits (60), Expect = 2.8
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ E E ++EEEE+EEEE+ E+ +E+E ++ E E+ + +++ RR
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRR 49
Score = 26.6 bits (59), Expect = 3.6
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+EEEEEE EE++ E+ +++E +E E +++++ + ++ A++
Sbjct: 10 DEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEE 60
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 29.6 bits (67), Expect = 0.83
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E E E E E EK EE KE + E+ + +E+++EE+ + VA
Sbjct: 178 LEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHVP 230
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 30.0 bits (68), Expect = 0.85
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 132 SNTQEEEEEEEENEEEEKEEE---------EEK----EEEKEEEEEKEEQKEEEEQKEEQ 178
+ Q E E+ ++E+++ +EK +E K E++ +E E+++ Q
Sbjct: 655 ESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQ 714
Query: 179 QISRR 183
Q+ R
Sbjct: 715 QVQPR 719
Score = 29.2 bits (66), Expect = 1.4
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEK------------EEEEEKEEQKEEE--EQKEEQQIS 181
EE + +E + E + E+++++ E + ++ + E E +EE + +
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRN 642
Query: 182 RRVADK 187
RR A +
Sbjct: 643 RRQAQQ 648
Score = 29.2 bits (66), Expect = 1.4
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
Q++ E E+++ E E+ ++E+++ +E Q+ ++K + Q
Sbjct: 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQ 691
Score = 27.7 bits (62), Expect = 4.9
Identities = 8/46 (17%), Positives = 11/46 (23%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E E E E + + E + E E Q
Sbjct: 961 EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006
Score = 27.3 bits (61), Expect = 5.5
Identities = 9/54 (16%), Positives = 14/54 (25%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ E E E E + E E E E + Q+ +
Sbjct: 960 EEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEH 1013
Score = 27.3 bits (61), Expect = 6.9
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ ++E + E E E E E + E + E
Sbjct: 950 VEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAV 997
Score = 26.9 bits (60), Expect = 9.0
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ EE + +++ E +E ++ E EK ++E++Q ++ RR
Sbjct: 632 GRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRR 682
>gnl|CDD|165339 PHA03046, PHA03046, Hypothetical protein; Provisional.
Length = 142
Score = 29.0 bits (65), Expect = 0.86
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+++EE + NE EK EE+ +K + E+EE + E ++I
Sbjct: 11 DDDEENDRNEHREKTSEEDGHYKKRLDVEEEEPNLINIRNEIKKI 55
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 29.9 bits (67), Expect = 0.86
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E E E + EEE EE E E E E E+E++ E+ E +++ A K
Sbjct: 211 ESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKK 260
Score = 27.9 bits (62), Expect = 3.5
Identities = 16/61 (26%), Positives = 36/61 (59%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
EV + PE E+ T+ E E+EE+ +E+ E+ ++++ + ++ E++EE+ ++
Sbjct: 213 EVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGERP 272
Query: 177 E 177
E
Sbjct: 273 E 273
Score = 27.2 bits (60), Expect = 5.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ E E E E E+ E+E + E ++EE+ +EQ E+ +Q++
Sbjct: 211 ESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQED 252
Score = 26.8 bits (59), Expect = 8.5
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
IS ++ + E E E+E EE E+E E E E EE+ +E+ ++ QQ
Sbjct: 202 ISASEPFQLESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQ 250
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 29.5 bits (67), Expect = 0.86
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
WQ+ + E E E EE EEE ++E E +++
Sbjct: 19 WQLPDF----DPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQ 67
Score = 28.7 bits (65), Expect = 1.8
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E E E E EE EE+ ++E + I
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAI 64
Score = 27.6 bits (62), Expect = 3.5
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E E E E +E +EE E+++
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEA 63
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 28.5 bits (64), Expect = 0.87
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
QEEE E EEE EKEEE EK +K
Sbjct: 72 QEEERRSARLARLEDREEE--RLEKEEEREKRARK 104
Score = 27.7 bits (62), Expect = 1.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E + + EE E+ +EE EKEE++E+ +K
Sbjct: 65 EAGGADIQEEERRSARLARLEDREEERLEKEEEREKRARK 104
Score = 25.4 bits (56), Expect = 9.8
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + +EEE+ E EEE E+++E E++ +++
Sbjct: 65 EAGGADIQEEERRSARLARLEDREEERLEKEEEREKRARKRK 106
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 29.3 bits (65), Expect = 0.87
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E + QEEE E+ E+ +++ EEE+++E+EE+E ++QKEE E + ++ R
Sbjct: 72 EEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAER 125
Score = 28.9 bits (64), Expect = 1.0
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
Q E+EE+E E+EE++ E +E ++ EE+ ++EE ++EE++
Sbjct: 38 QREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEER 82
Score = 28.9 bits (64), Expect = 1.1
Identities = 17/53 (32%), Positives = 36/53 (67%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++ E+EE+E E+E+++ E+EE K E+ ++EEE +++E++ +R +K
Sbjct: 37 EQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEK 89
Score = 28.5 bits (63), Expect = 1.5
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+EE +EE EKEE+ +++ E+EE++E+EEQ+ ++QKEE + R
Sbjct: 72 EEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAR 120
Score = 28.1 bits (62), Expect = 1.8
Identities = 16/49 (32%), Positives = 33/49 (67%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ EE EE ++EEE E++E+ + K E++E++EQ+E+++I ++
Sbjct: 63 RAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQ 111
Score = 27.8 bits (61), Expect = 2.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
QEE++ E E + + EE E+E ++EE+ E+E+K +++
Sbjct: 49 QEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEE 97
Score = 26.6 bits (58), Expect = 7.5
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
QE E+EE++ E +E + EE+ EE+ ++EEE +E+++ ++R A+
Sbjct: 44 QERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAE 95
Score = 26.2 bits (57), Expect = 9.9
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
EE E+E ++EE E+EEK ++K EEE+K+EQ+ R+
Sbjct: 64 AAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERI 108
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 29.5 bits (66), Expect = 0.87
Identities = 7/38 (18%), Positives = 21/38 (55%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E +++E + + EEE+ +++ E+ ++ +E+
Sbjct: 272 ESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 29.2 bits (65), Expect = 1.3
Identities = 5/40 (12%), Positives = 16/40 (40%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
G + + + + EE+ +++ E ++ E+
Sbjct: 270 GYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.4 bits (63), Expect = 2.3
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E +++E + +E+E+ +++ E + E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 27.2 bits (60), Expect = 6.1
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
E +++E +EEE ++ + E+ + ++
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDE 308
Score = 26.8 bits (59), Expect = 8.2
Identities = 4/39 (10%), Positives = 19/39 (48%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E +++ + +EE++ + ++ E+ ++ ++
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 29.5 bits (66), Expect = 0.88
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ E E + ++ E E E E E E EEE E++E E++ EE
Sbjct: 242 KIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
Score = 28.3 bits (63), Expect = 2.2
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE-EEEQKEEQQ 179
++ + + + E +E+ E +E + +K E E E E + E EEE EEQ+
Sbjct: 229 YLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQE 279
Score = 27.2 bits (60), Expect = 4.8
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
GE+ + +E+ E + +K E E E E E+E EE+ EE++ E
Sbjct: 233 GENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENE 281
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 29.8 bits (68), Expect = 0.88
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 19/69 (27%)
Query: 124 TWQMGEHISN-------TQEEEEEEEENE---------EEEK---EEEEEKEEEKEEEEE 164
T+++G H + T+EEEEE + + E + EE+EE EE+ E E
Sbjct: 245 TYRLGPHTTADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEV 304
Query: 165 KEEQKEEEE 173
E E
Sbjct: 305 AEAVAEALA 313
>gnl|CDD|182746 PRK10805, PRK10805, formate transporter; Provisional.
Length = 285
Score = 29.4 bits (66), Expect = 0.88
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 18/73 (24%)
Query: 68 LCIGVLGNIMVPCVILKSKDMRNSTN-IFLMNL------------SIADLMVLLVCTPTV 114
+C+G+L N+MV + S R+ + F+M L SIA++ ++ P
Sbjct: 165 VCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMI----PMG 220
Query: 115 LVEVN-SKPETWQ 126
+V + + PE W
Sbjct: 221 IVIRDFASPEFWT 233
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 29.3 bits (66), Expect = 0.90
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E E +EE EEE E + + E ++KE E+Q Q+ + DK+
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQK-RKSCRDKE 119
Score = 27.8 bits (62), Expect = 2.9
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+E E EEE + + E + +E E+Q +++K + R+ A
Sbjct: 73 EEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSA 123
Score = 26.6 bits (59), Expect = 5.6
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 135 QEEEEEEEENEEEEKEEE-----EEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+EE E EEE E + + E + KE E++ QK + + +E++ ++
Sbjct: 72 KEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKD 125
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 29.6 bits (66), Expect = 0.92
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 113 TVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEE---KEEEEEKEEEKEEEEEKEEQK 169
TV V+ T E +S E ++ E+N++ + + EE+ ++ +EE+ + K
Sbjct: 75 TVPTPVSEPNITRSFQEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSK 134
Query: 170 EEEEQKEEQ 178
+ + K+ Q
Sbjct: 135 DGKGSKKTQ 143
>gnl|CDD|153125 cd02434, Nodulin-21_like_3, Nodulin-21 and CCC1-related protein
family. Nodulin-21_like_3: This is a family of proteins
closely related to nodulin-21, a plant nodule-specific
protein that may be involved in symbiotic nitrogen
fixation. This family is also related to CCC1, a yeast
vacuole transmembrane protein that functions as an iron
and manganese transporter. .
Length = 225
Score = 29.2 bits (66), Expect = 0.92
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK--EEEEQKE 176
GE++S E + E + EE E E E EK E E K EE +
Sbjct: 51 AGEYVSTKAERDFLHSEKKREEWEIENYPEGEKSEMVEIYSLKGLSEEVADQ 102
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 29.7 bits (67), Expect = 0.96
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
E+E+ E E+ ++ E + + +++ EQ +EE Q
Sbjct: 372 EKEDLELYEQRQQLWFFENRKLWQRKKKLREQADEEYQ 409
Score = 27.4 bits (61), Expect = 4.8
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
EE E E+ E E+ ++ E + + +K+ EQ +E+ R
Sbjct: 365 EERLPTIEKEDLELYEQRQQLWFFENRKLWQRKKKLREQADEEYQQRHAT 414
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 29.7 bits (66), Expect = 0.98
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+H EEE + +N+ ++ EEEE E ++E EE +E++KE E+
Sbjct: 220 KHPLEKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEK 265
Score = 29.3 bits (65), Expect = 1.5
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
G+ ++ +E E +EE E EE ++E ++ E +EEK + EE + E R +A
Sbjct: 237 GDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHDVKDRNIA 294
Score = 28.1 bits (62), Expect = 3.2
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 112 PTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
T + K ++ E I + + ++ E EE E +EE E+ EE ++E ++ E
Sbjct: 211 ETNVNLFALKHPLEKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEG 270
Query: 172 EEQK 175
+E+K
Sbjct: 271 DEEK 274
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 29.6 bits (66), Expect = 0.98
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ T E+E +E+ E+ +K +E+ +E + EE +E +E K+++ +K
Sbjct: 207 VEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKK 251
Score = 28.9 bits (64), Expect = 1.8
Identities = 13/46 (28%), Positives = 34/46 (73%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E+E +E+EE+ K+ +E+ EE K EE ++ ++ ++++ K+ +++++
Sbjct: 212 EKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTK 257
Score = 27.7 bits (61), Expect = 4.6
Identities = 14/43 (32%), Positives = 30/43 (69%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
T E+EE+ ++ +E+ +E + E+ +E +E ++K+ +K +E KE
Sbjct: 216 TDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKE 258
Score = 27.7 bits (61), Expect = 5.0
Identities = 12/48 (25%), Positives = 32/48 (66%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E+EE+ + +E+ EE + +E ++ +E +K++ K+ +E +E ++ +
Sbjct: 217 DEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNK 264
Score = 27.3 bits (60), Expect = 5.4
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E+ E+ +E EE+ +K +E EE + EE KE +E K+++
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKK 248
Score = 26.9 bits (59), Expect = 7.2
Identities = 12/48 (25%), Positives = 32/48 (66%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E+ E+E +E++E+ ++ +E+ EE + +E ++ +E +K++ + + V
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEV 255
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 29.2 bits (66), Expect = 0.98
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEE 167
+++ K EEE+ E+++E EE + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETK 164
Score = 28.8 bits (65), Expect = 1.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEK 165
+++ EEEK E++++ EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 1.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
+++ + E E+ EK++E E+ E K K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPK 170
Score = 28.1 bits (63), Expect = 2.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEE 172
++K + EE++ EK++E E+ E K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.7 bits (62), Expect = 2.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEE 167
+ + +EE+ EK++E EE E K
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLS 166
Score = 27.3 bits (61), Expect = 3.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 156 EEEKEEEEEKEEQKEEEEQKEE 177
++ K EEE+ E+ +E EE + +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETK 164
Score = 27.3 bits (61), Expect = 3.9
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEE 173
+++ K EE++ E+++E ++ E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETK 164
Score = 27.3 bits (61), Expect = 4.2
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 157 EEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++K + EE++ +K++E ++ E ++S
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPK 170
Score = 26.9 bits (60), Expect = 5.6
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEE 173
++ + +EE+ E+++E EE + +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLS 166
Score = 26.5 bits (59), Expect = 7.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEE 158
+ EEE+ +++E EE E K
Sbjct: 145 PKIEEEKAEKDQEPEESETKLSN 167
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 27.8 bits (62), Expect = 0.99
Identities = 7/35 (20%), Positives = 29/35 (82%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E EE E+++++E +++++ +++K+++++ +++ +E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 26.7 bits (59), Expect = 2.5
Identities = 8/35 (22%), Positives = 28/35 (80%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
E EE E+++++E+ +++++K+++ +++++ +E E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 25.9 bits (57), Expect = 4.3
Identities = 7/35 (20%), Positives = 27/35 (77%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E EE E ++++E +++ +++++K++ +++++ +E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 25.9 bits (57), Expect = 4.7
Identities = 5/35 (14%), Positives = 29/35 (82%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E EE E+++++++++++ +++ +++++ ++ +++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 25.5 bits (56), Expect = 6.5
Identities = 5/33 (15%), Positives = 24/33 (72%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E E E++ ++E++ +++ +++++ ++ ++E+
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDED 78
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 29.1 bits (66), Expect = 1.00
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EEKEEEEE E+E+E EE+ E+ EEE ++ + ++ R +A+ +
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFE 42
Score = 28.7 bits (65), Expect = 1.2
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
EE+EE EE E EEE +EE +E EEE EE K+
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
Score = 28.7 bits (65), Expect = 1.2
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
EE+EEEEE E+EE+ EEE EE +EE EE +++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
Score = 26.4 bits (59), Expect = 6.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
EEE EEE EE E+E EE K+ E E ++ E++ E+ +
Sbjct: 7 EELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAIEK 62
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 28.4 bits (64), Expect = 1.0
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 16/57 (28%)
Query: 138 EEEEEENEEEEKEEEEEKEEE----------------KEEEEEKEEQKEEEEQKEEQ 178
++ EEE +EE KE E +E+ +E E K ++KE++++K+++
Sbjct: 31 DKREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKE 87
Score = 27.2 bits (61), Expect = 2.8
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 16/58 (27%)
Query: 135 QEEEEEEEENEEEEKEEEEE----------------KEEEKEEEEEKEEQKEEEEQKE 176
+ EEEE+EE +E E +E+ +E + + +EKE++K+++++ E
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELE 89
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 29.5 bits (67), Expect = 1.0
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ-KEEQQISRRVAD 186
E+E E EEE + EE+ + EK + ++ KEE EQ + E + + R D
Sbjct: 440 EKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGD 489
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function
prediction only].
Length = 766
Score = 29.7 bits (67), Expect = 1.0
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEE--EEKEEEEEKEEEKEEEEEKEE 167
VLV V+S+ E + + + ++E E E E+EE E
Sbjct: 256 VLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAE 311
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 29.6 bits (67), Expect = 1.0
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E I +E+EE EE +++ KE E+ EE +E E EE K ++E+ E
Sbjct: 328 ERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER 376
Score = 28.1 bits (63), Expect = 2.9
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E EE+EE EE K++ +E E+ EE EE+ E EE + K+E+
Sbjct: 331 KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
Score = 28.1 bits (63), Expect = 3.3
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 129 EHISNTQE--EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E I +E EE ++E E EEK +E ++ +EK EE K + EE E ++I +R++
Sbjct: 259 EKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318
Score = 27.3 bits (61), Expect = 5.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
I+ E E E E+ ++E +E EE KEE EE E++ E E
Sbjct: 209 INEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGS 253
Score = 27.0 bits (60), Expect = 8.6
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
EE E+E E E + + +E+ +E EE EE K+E E+ EE+
Sbjct: 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281
Score = 26.6 bits (59), Expect = 9.0
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EE +E EE+E+ EE K++ KE E+ EE +E E EE
Sbjct: 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE 366
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 29.3 bits (66), Expect = 1.1
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E+ + ++ E+ + + EE+E + EE Q + + +A+K
Sbjct: 25 IEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLKSATDLAEK 68
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 28.7 bits (65), Expect = 1.1
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E EE +EEE+EE+++ ++ E+E+ + + + + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 28.7 bits (65), Expect = 1.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
E EE + EEEE++++ + E E+ E K+ K +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRP 147
Score = 27.2 bits (61), Expect = 3.3
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
E EE +E EEEE ++ ++ E+++ E + + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPS 148
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 28.6 bits (64), Expect = 1.1
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+E+E++E E +EK E E+ K+ E K EQK E+E+ +E
Sbjct: 45 EEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQE 87
Score = 28.2 bits (63), Expect = 1.6
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EE ++E+ + E E+K EE+E++E +E +KE+ E EE
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEE 65
Score = 27.8 bits (62), Expect = 2.0
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE--EEQKEEQQISR 182
E ++E+ E E + EE+E++E +E KE+ E EE++ + E +K EQ++
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMED 82
Score = 27.4 bits (61), Expect = 2.4
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
EE+ KE+ + E+K EE+EK+E++E ++K E RR
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERR 67
Score = 25.9 bits (57), Expect = 9.2
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEE-EEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E ++ E E++ EE E++E+EE +EK E EE K+ + + EQK E +
Sbjct: 24 SQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDE 83
Query: 180 ISRRV 184
+
Sbjct: 84 KLQET 88
Score = 25.9 bits (57), Expect = 9.4
Identities = 12/47 (25%), Positives = 31/47 (65%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
EE +E++ E E++ E++E++E+EE ++E+ + E++ +++
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLE 72
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 28.8 bits (65), Expect = 1.1
Identities = 12/54 (22%), Positives = 33/54 (61%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
Q E+E ++ E +K+E+E ++EE++ +++ EE + ++Q++ ++ +
Sbjct: 37 QKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQE 90
Score = 27.6 bits (62), Expect = 2.5
Identities = 12/54 (22%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 136 EEEEEEEENEEEEKEEEEEK--EEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+++E+E + EE++ +++ EE ++ ++++ +QK++E Q+++Q + + K
Sbjct: 52 QKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQK 105
Score = 27.6 bits (62), Expect = 2.7
Identities = 11/44 (25%), Positives = 33/44 (75%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+EE K +++E +++++E ++K++ ++E Q+++Q++ + + DK
Sbjct: 73 SEEARKAKQQELQQKQQELQQKQQAAQQELQQKQQELLQPIYDK 116
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 29.2 bits (66), Expect = 1.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
+ E EE+E++E+ EE+ +EE K +E
Sbjct: 295 QGGGEAAASAEEEEDDEDDEEDDDEETLKARAWDE 329
Score = 28.8 bits (65), Expect = 1.4
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
T +E E+E + E EEEE+ E+ +E+++++ +
Sbjct: 279 TVDEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKA 324
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 28.7 bits (65), Expect = 1.1
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 129 EHISNTQEEEEEEE---ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+H++ + E E E + + K+E+ E +E + + ++ E +
Sbjct: 51 QHLAELAADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAE 103
Score = 27.5 bits (62), Expect = 2.7
Identities = 5/38 (13%), Positives = 17/38 (44%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ + ++E+ E +E + + +E E + + +
Sbjct: 73 QAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 28.9 bits (65), Expect = 1.1
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEE--------KEEEEEKEEQKE--EEEQKEEQQISRRVA 185
E ++++ E EEE+E+EE+ E K+ + E E E+ +Q+S +++
Sbjct: 11 ESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATSNPKQVSEKIS 70
Query: 186 D 186
Sbjct: 71 A 71
Score = 26.6 bits (59), Expect = 6.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E+ ++ + E +++ EE EEEEE EE E E
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLE 34
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 29.4 bits (67), Expect = 1.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
EE + EE++E EE E EEEE+++++++
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 28.7 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
N+ EE+ E EE E EE+EE+KEE++
Sbjct: 59 NSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 26.7 bits (60), Expect = 7.7
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
EE+ E E + EEE+E+++E++ E+ +
Sbjct: 63 LEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
>gnl|CDD|216611 pfam01621, Fusion_gly_K, Cell fusion glycoprotein K. This protein
is probably an integral membrane bound glycoprotein that
is involved in viral fusion with the host cell.
Length = 337
Score = 29.2 bits (66), Expect = 1.1
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 63 LCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTV 114
L + L G LG PC ++ ++ +F+ ++ +L+ LL P
Sbjct: 226 LAAQCLSAGTLGITFTPCALVYPLYVKIVAWVFVGAIAALELVSLLRPKPAK 277
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 29.3 bits (66), Expect = 1.2
Identities = 8/53 (15%), Positives = 22/53 (41%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+E + + +E + + E + + EEK Q+ +++ +R +
Sbjct: 884 EENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEY 936
Score = 27.8 bits (62), Expect = 4.2
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEK--EEQKEEEEQKEEQQISR 182
+ E + ++ E + + EEK +E + EE ++ ++ +
Sbjct: 890 GQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDK 939
Score = 27.4 bits (61), Expect = 5.2
Identities = 7/63 (11%), Positives = 24/63 (38%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ + T + + E +N + +E+ ++ + E+ ++ +E Q +
Sbjct: 880 SIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDK 939
Query: 177 EQQ 179
+
Sbjct: 940 HKG 942
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 29.5 bits (66), Expect = 1.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
+ E +E+E++ +E E + EKE ++ EE+K
Sbjct: 362 RVPPLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 27.5 bits (61), Expect = 5.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
E +E+E+ +E+E + EKE + +EE K
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for centrosome
separation and maintenance of spindle bi-polarity. TPX2
is a microtubule-associated protein that mediates the
binding of the C-terminal domain of Xklp2 to
microtubules. It is phosphorylated during mitosis in a
microtubule-dependent way.
Length = 57
Score = 27.0 bits (60), Expect = 1.2
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E E+ E ++K EE+EK E E+EE + QKEEEE+ +Q
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQ 45
Score = 27.0 bits (60), Expect = 1.2
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
++ E E+ E +++ +E+E+ E EKEE E +++++EEE K+
Sbjct: 2 HSDERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQ 45
Score = 26.6 bits (59), Expect = 2.1
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
EE+E+ E EKEE E +++E+EEE K+ +KE
Sbjct: 18 EEKEKALEAEKEEAEARQKEEEEEAIKQLRKE 49
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 29.0 bits (66), Expect = 1.2
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 139 EEEEENEEEEKEEEEEKEEEKE-EEEEKEEQKEEEEQKEEQQISR 182
E+ +E +EE K +K+E K + +K+++K+E + + + R
Sbjct: 47 EQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 27.1 bits (61), Expect = 5.4
Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 128 GEHISNTQEEEEEEEENEEEEKE-EEEEKEEEKEEEEEKEEQKE 170
E +EE + +++E K + +K++EK+E + + + +
Sbjct: 46 NEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 28.9 bits (65), Expect = 1.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ EE + E+EEE E+EEE +EE+KEE ++ +
Sbjct: 93 SKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIK 135
Score = 27.4 bits (61), Expect = 4.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
EEEEE EE EE+ EE++E+ +K KE + +
Sbjct: 103 AAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIPAAGES 145
Score = 27.0 bits (60), Expect = 6.4
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
I + E++ + E + EEE+E E+EEE+ EE+KEE +K I
Sbjct: 85 IYRSLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIK 135
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEE 167
+ E +KEE+KEEEEE+E+
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEED 104
Score = 26.4 bits (58), Expect = 4.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEE 173
K E K+EE+++EE++EE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 26.0 bits (57), Expect = 6.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEE 163
+ E K+EE+++EEE+EE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 26.0 bits (57), Expect = 7.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 138 EEEEEENEEEEKEEEEEKEEE 158
+ E +EE+KEEEEE+E++
Sbjct: 85 GAKAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 28.0 bits (63), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 142 EENEEEEKEEEEEKEEEKEE--EEEKEEQKEEEEQKEEQQI 180
E ++ + E E E E E EK E+KE+ E+K E+++
Sbjct: 45 SEFKDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEEL 85
Score = 27.6 bits (62), Expect = 1.7
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 139 EEEEENEEEEKEE--EEEKEEEKEEEEEKEEQKEEEEQKE 176
++ ++ E E E++E EK E++EK E+K EEE KE
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
Score = 25.7 bits (57), Expect = 6.3
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
++ +E E E E++E E+ ++++K E++ +EE +
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELK 86
Score = 25.7 bits (57), Expect = 7.4
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++ ++E E E EK E ++ E++++ +K+ EE+ +E
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
Score = 25.3 bits (56), Expect = 9.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 135 QEEEEEEEENEEEEKEE--EEEKEEEKEEEEEK-EEQKEE 171
++ ++E E E E EK E+KE+ E+K EE+ +E
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 29.3 bits (65), Expect = 1.2
Identities = 11/48 (22%), Positives = 30/48 (62%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+EE+E E+ + KEEE K+E++ E+ ++ + ++ ++++ ++
Sbjct: 1029 QEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKK 1076
Score = 27.8 bits (61), Expect = 4.1
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ + G EE + E EE + EE +E + E ++EE +K+E+
Sbjct: 597 QDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEE 652
Score = 27.8 bits (61), Expect = 4.4
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEK---EEEEEKEEQKEEEEQKEEQQ 179
G ++ EE +E + E E +E +KEE + E EE + +K++ + E++
Sbjct: 623 GSSVTAENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEK 677
Score = 27.8 bits (61), Expect = 4.8
Identities = 10/50 (20%), Positives = 30/50 (60%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E +++EE E E + ++EE ++E+E+E++ + ++++++
Sbjct: 1022 VKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKK 1071
Score = 27.0 bits (59), Expect = 7.7
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
I + +++EE+E E + +EE+ +KE+E E+ +K + +E R
Sbjct: 1021 IVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKR 1072
Score = 27.0 bits (59), Expect = 8.3
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
S E E N +++EE E EE+ + E+K+ + EE+++ +++ + + E +
Sbjct: 633 SADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFE 692
Score = 26.6 bits (58), Expect = 9.8
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E E+ E ++ +E + +EEKE E + KEEE K+E++ +R+
Sbjct: 1009 PECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKT 1060
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 29.2 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
EH+ N E E+ ++E+E EEEE+ + + E + +KE+ ++K+
Sbjct: 183 EHLWNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKD 230
Score = 28.5 bits (63), Expect = 2.2
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK-----EEEEQKEEQQISRR 183
S ++EEE E E++E+E E+ + K +++ ++ K+ +K E E+++E ++I
Sbjct: 241 METSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHIEYEQERENEKIPAV 300
Query: 184 VA 185
Sbjct: 301 QH 302
Score = 27.3 bits (60), Expect = 5.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E E ++EKE E+EEE + E E E+E+ +++ + + +
Sbjct: 192 EREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQ 239
>gnl|CDD|236885 PRK11246, PRK11246, hypothetical protein; Provisional.
Length = 218
Score = 28.9 bits (65), Expect = 1.3
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 85 SKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHI--SNTQEEEEEEE 142
+K + N+TNI + L +A L + +V T T+L K WQ + ++ EEEE
Sbjct: 155 AKQVDNTTNILRLMLLLA-LAIGIVLTRTLL---QGKRTRWQQSPFLLTASKPVPEEEES 210
Query: 143 ENEEEEKE 150
E +E E
Sbjct: 211 EKKEPEAL 218
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 29.1 bits (66), Expect = 1.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEK 165
EE+ N+EEE EE EK E +EE E
Sbjct: 207 EEDPGNDEEEAREEVEKLESGDEEAEL 233
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 28.8 bits (65), Expect = 1.3
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
EE+ EE E E+E E EK E EE E+K E+ E+++K+ + + +
Sbjct: 7 EEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQII 54
Score = 27.3 bits (61), Expect = 4.0
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
++E EE+ E E EEE E E+ + EE +++ +E E+KE+Q
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQ 46
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 29.2 bits (66), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
+ ++EEE E K +EE EEE+E +
Sbjct: 311 RRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.0 bits (63), Expect = 3.4
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEE 162
+ ++EEE + +EE E+EEE +
Sbjct: 309 LRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.0 bits (63), Expect = 3.7
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
++EE E + +E+ E+EEE + ++
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDD 346
Score = 27.6 bits (62), Expect = 4.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
++EEE E K +EE EE++E
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 27.2 bits (61), Expect = 6.0
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
+ ++EEE E + +EE +EEE+ +
Sbjct: 311 RRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 27.2 bits (61), Expect = 6.2
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
++EEE E + +E+ ++EEE + +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILAL 344
Score = 26.8 bits (60), Expect = 7.7
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+++EE E + +E+ EEE++ I
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDIL 342
>gnl|CDD|236233 PRK08311, PRK08311, putative RNA polymerase sigma factor SigI;
Reviewed.
Length = 237
Score = 29.1 bits (66), Expect = 1.3
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++ + +EE+EEEN+ E + EE +EE+E EE +EE +E +++ +E I+
Sbjct: 96 NLVLSNSDEEDEEENDIEIELSLEEYQEEEENEERREEIEEFKKELKEFGIT 147
Score = 27.5 bits (62), Expect = 3.4
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+ +EE+EEE E E EE +EEEE EE++EE E+
Sbjct: 94 KHNLVLSNSDEEDEEENDIEIELSLEEYQEEEENEERREEIEE 136
>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor.
Length = 200
Score = 28.8 bits (65), Expect = 1.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
M E ++ EE E+EE+E + +K +E +E KE+E
Sbjct: 1 MAEQEPTAEQAEEIAAEDEEDEDSVNYKPPPQKSLKEIQELDKEDE 46
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 28.0 bits (61), Expect = 1.4
Identities = 16/44 (36%), Positives = 33/44 (75%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ ++E E+E++ E+ E E+E++ E+ + E+E+K E+ E E++KE
Sbjct: 58 HIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
Score = 27.3 bits (59), Expect = 2.9
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
N E++ E+ ENE+E+K E+ E E+EK+ E+ + E ++E E +
Sbjct: 63 NEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSD 106
Score = 25.7 bits (55), Expect = 9.2
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E ++ENE+E+K E+ E E+EK+ E+ + E +++ E+ E +
Sbjct: 57 EHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENE 97
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 29.0 bits (65), Expect = 1.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
TQE + N E +E E E EE+E+++ ++++
Sbjct: 568 TQEPYDPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 27.8 bits (62), Expect = 4.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEE 161
N + EE E E EE+EE ++E ++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 27.1 bits (60), Expect = 6.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
N E EE E + EE++E+ E+++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 26.7 bits (59), Expect = 8.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEK 159
+ EE E E E++EE++ E++
Sbjct: 579 NEASEETETITVPENNEEDEEDDDEDDD 606
Score = 26.7 bits (59), Expect = 9.3
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
E EE E EE EE+ +E+++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 26.7 bits (59), Expect = 9.3
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKE 160
+N EE E E +E+EE+ +E+ +
Sbjct: 577 NNNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 28.9 bits (66), Expect = 1.4
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 138 EEEEEENEE--EEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+E+ EE +E EE+ + E +E KEE +E EE+ EE E++
Sbjct: 58 QEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEE 97
Score = 26.6 bits (60), Expect = 9.4
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 133 NTQEEEEEEEE--NEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
QE+ EE +E EE + E E +EE +E EE+ E+ EEE
Sbjct: 56 QAQEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEE 97
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 28.6 bits (64), Expect = 1.5
Identities = 14/48 (29%), Positives = 33/48 (68%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
TQ+ EE ++ E + E+K ++K+ E++KE +K+++E+K++++
Sbjct: 120 HRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 29.1 bits (66), Expect = 1.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 153 EEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E++ E+ +E +K+++E +EQ+ RR
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRR 269
Score = 27.2 bits (61), Expect = 5.8
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E++ E +E E++++E +E+E + + K ++ SR
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRI 284
>gnl|CDD|206207 pfam14037, YoqO, YoqO-like protein. The YoqO-like protein family
includes the B. subtilis YoqO protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria and viruses. Proteins in this family
are approximately 120 amino acids in length. There are
two completely conserved residues (I and Y) that may be
functionally important.
Length = 117
Score = 28.0 bits (63), Expect = 1.6
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 39 FVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMN 98
FV N +D+ Y R S+++ I I +L +P ++LK +D +S IF
Sbjct: 39 FVLLYN-WDE---MKTYSRK-SLIIIGIEFVILILT---IPFLLLKGQDQMDSIPIFQGW 90
Query: 99 LSIADLMVLLV 109
L+IA ++ ++
Sbjct: 91 LTIAKILYIIG 101
>gnl|CDD|153128 cd02437, CCC1_like_1, CCC1-related protein family. CCC1_like_1:
This is a protein family closely related to CCC1, a
family of proteins involved in iron and manganese
transport. Yeast CCC1 is a vacuole transmembrane protein
responsible for the iron and manganese accumulation in
vacuole. .
Length = 175
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK--EEQKEEEE 173
ISN EE + EE+E+ E+ EE +
Sbjct: 42 GAFALGISNGLGAAVAEEGSLRGMLEEKEKILLRLEQMLTSTREELAIRKA 92
>gnl|CDD|150747 pfam10107, Endonuc_Holl, Endonuclease related to archaeal Holliday
junction resolvase. This domain is found in various
predicted bacterial endonucleases which are distantly
related to archaeal Holliday junction resolvases.
Length = 153
Score = 28.5 bits (64), Expect = 1.6
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E+ E E+ E E + + E + +E QK+EE++ + +++ A
Sbjct: 21 EKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRKDAVNKSRA 69
Score = 26.2 bits (58), Expect = 7.5
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE-QKEEQQISRRV 184
+ E+ E + E E + E E + E+ ++KEE+E +K+ SR V
Sbjct: 15 KLQGKVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRKDAVNKSRAV 70
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 28.7 bits (65), Expect = 1.6
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE--QQISR 182
E + +EEE+ E E +E E E Q R
Sbjct: 268 AEILAQRAEEEEESSEGAAETIEEPELDLETISAQSLR 305
Score = 28.3 bits (64), Expect = 2.1
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEE--QQIS 181
K E + +EEEE E E E+ E + IS
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPELDLETIS 300
Score = 28.3 bits (64), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEE 161
+ EEEEE+ E E EE E + E
Sbjct: 272 AQRAEEEEESSEGAAETIEEPELDLET 298
Score = 28.3 bits (64), Expect = 2.5
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
E + EEE+E E E EE E E
Sbjct: 268 AEILAQRAEEEEESSEGAAETIEEPELDLET 298
Score = 27.6 bits (62), Expect = 4.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+ E + EEEE+ E E +E E + E
Sbjct: 266 KRAEILAQRAEEEEESSEGAAETIEEPELDLET 298
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 28.9 bits (65), Expect = 1.6
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+Q+ E + + + + E + E+ E +EK+++K++EE+K++Q
Sbjct: 291 YQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQ 344
>gnl|CDD|220714 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-binding protein.
Kin17_mid is the conserved central 169 residue region of
a family of Kin17 proteins. Towards the N-terminal end
there is a zinc-finger domain, and in human and mouse
members there is a RecA-like domain further downstream.
The Kin17 protein in humans forms intra-nuclear foci
during cell proliferation and is re-distributed in the
nucleoplasm during the cell cycle.
Length = 127
Score = 28.0 bits (63), Expect = 1.6
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 154 EKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E + +EE +KE+Q++ +E++E++ + ++
Sbjct: 96 EALKRQEELRKKEKQEKTDEEREQKLLEEQI 126
Score = 26.8 bits (60), Expect = 3.8
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
E +++EE K+E++E+ +E+ EQK EEQ
Sbjct: 96 EALKRQEELRKKEKQEKTDEEREQKLLEEQ 125
Score = 25.7 bits (57), Expect = 9.1
Identities = 8/30 (26%), Positives = 22/30 (73%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + +E+ +KE++E+ +E++E++ +E+
Sbjct: 96 EALKRQEELRKKEKQEKTDEEREQKLLEEQ 125
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related to
pfam00005.
Length = 85
Score = 27.2 bits (61), Expect = 1.6
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 152 EEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E+KEE E++E+ E++++E +K E+ I R
Sbjct: 19 LEQKEERLEQQEKAYEKQQKEIKKLEEFIDR 49
Score = 27.2 bits (61), Expect = 2.2
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E+KEE E++E+ E+++KE +K EE
Sbjct: 19 LEQKEERLEQQEKAYEKQQKEIKKLEE 45
Score = 26.0 bits (58), Expect = 4.7
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 153 EEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E++EE+ E++EK +K+++E K+ ++ R
Sbjct: 19 LEQKEERLEQQEKAYEKQQKEIKKLEEFIDR 49
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 29.0 bits (65), Expect = 1.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 138 EEEEEENEEEEKEEEE----EKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ EE E EK+ EE E+E+ +E+ E E +E +E+++ + K
Sbjct: 149 KNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKL 203
Score = 26.7 bits (59), Expect = 8.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EE E+E NE+ + +K+E + EE+ QK+E++ +QI
Sbjct: 43 TLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQI 88
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 28.5 bits (64), Expect = 1.7
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ E+ EEE ++ E KEEE E ++ ++ EE +E + +
Sbjct: 29 KVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQ 77
Score = 28.1 bits (63), Expect = 2.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EEE E+ +EE+ E +E ++ EE E EE Q ++
Sbjct: 39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEE 82
Score = 27.4 bits (61), Expect = 4.2
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
Q E +EEE E +E +E EE E E+ Q EE EE Q RV ++
Sbjct: 44 QALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGRVLER 96
Score = 27.0 bits (60), Expect = 5.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EEEE E+ E ++EE E +E +E E+ ++ EE +
Sbjct: 35 AVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQL 78
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 28.1 bits (63), Expect = 1.7
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
E+E + EEE +++ ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 26.5 bits (59), Expect = 5.7
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
E+E +EEE E++ ++ +E+ EE+E+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 29.1 bits (65), Expect = 1.7
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E N + +E+++EK+++K E KE+ +++E+ + V ++
Sbjct: 8 EANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQ 56
Score = 29.1 bits (65), Expect = 1.8
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
N + +E+++ ++++K E KE+ +++EE + KE+
Sbjct: 11 INNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQ 56
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 28.3 bits (64), Expect = 1.7
Identities = 11/47 (23%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKE-EEEEKEEQKEEEEQ 174
+++ + +++++ +++E E EEK+++ EE KE+QK +
Sbjct: 74 PKLNDAYFKRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAA 120
Score = 26.7 bits (60), Expect = 5.6
Identities = 11/31 (35%), Positives = 24/31 (77%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+K+++++K+E + EE+K++ EE+KE+Q
Sbjct: 84 KKKKKKKKKEGEFFEEKKKKYVVSEERKEDQ 114
Score = 26.4 bits (59), Expect = 6.9
Identities = 8/38 (21%), Positives = 26/38 (68%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ ++++K++E E EEK+++ E+++E+++ + +
Sbjct: 84 KKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAAL 121
>gnl|CDD|221165 pfam11680, DUF3276, Protein of unknown function (DUF3276). This
bacterial family of proteins has no known function.
Length = 123
Score = 28.0 bits (63), Expect = 1.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++E EE E + E+KE EE E +K + + + I
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEIFTDID 122
Score = 27.3 bits (61), Expect = 3.2
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+ ++I + EE E +++ EK+E E+ E ++ + + E
Sbjct: 76 EAIDYIKKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEI 117
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 27.8 bits (62), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
E + EE +EE +E E + E E EK+ K
Sbjct: 2 LDESTDVEELTDEEVEELLSELQARNEAEAEKKAAK 37
Score = 26.2 bits (58), Expect = 5.5
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E EE EE +E E + + E E +K+ +I ++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAAKILKK 41
Score = 25.5 bits (56), Expect = 9.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
T EE +EE EE E + E E E++ K +K E K
Sbjct: 6 TDVEELTDEEVEELLSELQARNEAEAEKKAAKILKKNRREIK 47
Score = 25.5 bits (56), Expect = 9.2
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEE 162
M + ++ +E +EE E E + E E EK+
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 29.0 bits (65), Expect = 1.7
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
K + E+ + EE + EE++E+E++E+ + + E + EE++EE+++
Sbjct: 404 QKEPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPST 463
Query: 180 I 180
I
Sbjct: 464 I 464
Score = 28.6 bits (64), Expect = 1.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E + + Q+E EE+ ++E EE EE +E+EE E+ + E
Sbjct: 396 TSEFVRSLQKEPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVE 442
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 29.0 bits (65), Expect = 1.7
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK-EEEEQK 175
V + E G+ T+E + E E E + E E E+ E EQ +EE+ +
Sbjct: 247 LVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQ 306
Query: 176 EEQQISRRVADK 187
EQ++ A +
Sbjct: 307 AEQEVQHAKALE 318
Score = 26.7 bits (59), Expect = 8.8
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
++ + E E E E E+ ++E+ + E+E + + E + I R+
Sbjct: 278 VAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQK 331
>gnl|CDD|129474 TIGR00378, cax, calcium/proton exchanger (cax). [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 349
Score = 28.7 bits (64), Expect = 1.8
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 96 LMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEK 155
++NLS +V+++ L +Q+G H + +++E E +E E +
Sbjct: 149 ILNLSRGTSIVIIIVYVLFLY--------FQLGTHHALYEQQEAETDEVMETIERNPHHS 200
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 28.7 bits (64), Expect = 1.8
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
PE + E +E+ EE ++ +EE +E EE E E EE +E+ ++ E E + E+ +
Sbjct: 128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187
Query: 182 RR 183
+
Sbjct: 188 KL 189
Score = 26.4 bits (58), Expect = 8.5
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+T Q + +E+ EE +E EE ++E+EE +E EE E + E+ +E ++ E + SR
Sbjct: 122 KTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSR 181
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 28.8 bits (65), Expect = 1.8
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E + + + + E +++E E E EE++++ E + E+ Q++ + S+
Sbjct: 159 ELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQ 212
Score = 28.8 bits (65), Expect = 2.0
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ-KEEEEQKEEQQ 179
K + + +Q E +++ + E EE+++E E + EQ +E+ + +++
Sbjct: 155 KQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQER 214
Query: 180 ISRRV 184
+R
Sbjct: 215 KQKRK 219
Score = 28.8 bits (65), Expect = 2.1
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E +++E E E EEK++E E + E+ ++K E +E +Q + + D+
Sbjct: 173 EAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQ 224
Score = 28.4 bits (64), Expect = 2.9
Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEE---EKEEQKEEEEQKEEQQISRRVADK 187
+ +++E E E EE+++E + + E EK + +E +++ ++I+ + A +
Sbjct: 173 EAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQAAKR 228
Score = 26.8 bits (60), Expect = 8.2
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
T +++ E + E+ + + E ++++ E + EE+Q+E +
Sbjct: 153 TLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEA 198
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This
family consists of several proteins of unknown function
Raphanus sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 28.2 bits (62), Expect = 1.8
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ E E KEE++E + E E +EEK+E K E E KEE++
Sbjct: 94 KGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKK 130
Score = 27.4 bits (60), Expect = 2.6
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E +EE++ + E E +EEK+E K E E KEE+KE E
Sbjct: 98 EGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVE 133
Score = 27.4 bits (60), Expect = 3.2
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E E +EE+KE + E E ++E++E K E + +EE+KE + R+
Sbjct: 96 EIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK 138
Score = 25.9 bits (56), Expect = 9.8
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+EE++E + E E KEE++E + E E +EEK+E
Sbjct: 100 KEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKE 131
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEE 158
GE + ++E N+E E+E+ +E+EEE
Sbjct: 208 GEAMPIENHLQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 28.9 bits (66), Expect = 1.8
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 129 EHISNTQEEEEEEE------ENEEEEKEEEEEKEEEKEEEEEKEEQKEE-----EEQKEE 177
E + EE + + + + KE+EEEKEE++E EEE + E ++ ++
Sbjct: 452 EFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKD 511
Query: 178 QQISRRVAD 186
++S R+ D
Sbjct: 512 VRLSHRLTD 520
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 28.7 bits (64), Expect = 1.8
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEE------EEKEEQKEEEEQKEEQQISR 182
EE E E E+E EEEEE++ + E E EK + +EE + Q R
Sbjct: 62 SEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEARLLTQRRR 113
>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal
putative domain.
Length = 165
Score = 28.1 bits (63), Expect = 1.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E + EE EE + +E E+E KE+EE E +K + + K Q
Sbjct: 4 QFVFPEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSDDKTFQ 63
Query: 179 QISRRVA 185
+ +RVA
Sbjct: 64 KFKKRVA 70
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 28.9 bits (65), Expect = 1.9
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEE----KEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E + + ++ +E E EE + EEE KEE+ + EK + E + ++ E+ +S R
Sbjct: 59 ELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSAR 117
Score = 28.5 bits (64), Expect = 2.1
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ E+ +N E + EE E+ +E E E+ E++ + E ++ A K
Sbjct: 90 EEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARK 145
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 28.6 bits (64), Expect = 1.9
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
Q + I+ +E+ E E+E EEEE E++++ + E+E+E EE + RV
Sbjct: 123 QFEDDITRYREDPESEDE-EEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVK 181
Query: 186 DKD 188
+ D
Sbjct: 182 EDD 184
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 27.6 bits (62), Expect = 1.9
Identities = 10/32 (31%), Positives = 24/32 (75%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EK+++++K E + E+KE+++ E++K +Q+
Sbjct: 40 EKKKKKKKSEGEFFAEKKEKKEVSEQRKADQK 71
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. This
eukaryotic domain is found at the C-terminus of 26S
proteasome regulatory subunits such as the non-ATPase
Rpn3 subunit which is essential for proteasomal
function. It occurs together with the PCI/PINT domain
(pfam01399).
Length = 68
Score = 26.9 bits (60), Expect = 1.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++E+KEEEK EE + +Q E E KE +
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGD 65
Score = 25.0 bits (55), Expect = 7.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
++E +EEEK EE + ++ E E KE + + +
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLD 67
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 28.5 bits (64), Expect = 1.9
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 20/62 (32%)
Query: 135 QEEEEEEEENEEEEKEEEEEK--------------------EEEKEEEEEKEEQKEEEEQ 174
+E+ E+ KEE ++ + E EEEE+E +EEEE
Sbjct: 117 LNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEV 176
Query: 175 KE 176
KE
Sbjct: 177 KE 178
Score = 27.3 bits (61), Expect = 3.9
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + + + KEE K+ E + +E++ E
Sbjct: 115 ENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSE 153
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 28.6 bits (64), Expect = 1.9
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
T E EE+ + EEEE + E+K +E EEE + E++ ++E +++ V +
Sbjct: 32 EETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEAT 88
Score = 28.2 bits (63), Expect = 2.1
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E + ++E E EE E EEK +++EEE + E+K +E ++E +++ A +
Sbjct: 15 EQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASE 74
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 28.8 bits (64), Expect = 1.9
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 8/42 (19%)
Query: 146 EEEKEEEEEKEEE--------KEEEEEKEEQKEEEEQKEEQQ 179
EEKE ++E +E+ +E EE +EQ+EEEE +EE++
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
>gnl|CDD|145910 pfam03012, PP_M1, Phosphoprotein. This family includes the M1
phosphoprotein non-structural RNA polymerase alpha
subunit, which is thought to be a component of the
active polymerase, and may be involved in template
binding.
Length = 298
Score = 28.5 bits (64), Expect = 2.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 116 VEVNSKPETWQMGE-HISNTQEEEEEEEENEEEEKEEEEEKEEEKEE 161
+EV+S PE M IS+ + + EEE+E+E EE+ E E+
Sbjct: 44 IEVDSLPE--DMSRLQISDAKPSQFTEEEDEDEGSSEEDFYMTEGED 88
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 28.6 bits (64), Expect = 2.0
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEE 164
E++EE EE+ EE +E EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.2 bits (63), Expect = 2.6
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
Q E++EE+ E+ +E +E++EE+ E+E
Sbjct: 50 QLLEQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 3.8
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 154 EKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E++EEKEE+ +E ++EEEQ E++ S
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEHFS 80
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 28.8 bits (65), Expect = 2.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E EE E+E+K ++E KEE + + K ++ E
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
Score = 28.1 bits (63), Expect = 3.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E EEKE+E++ ++E +EE Q + E+ E
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
Score = 27.3 bits (61), Expect = 5.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
+EE+E+E++ ++E KEE + K EE
Sbjct: 393 REEKEKEKKAKKEGKEERRIHFQNKSIEE 421
Score = 26.9 bits (60), Expect = 6.7
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+E EE+E+E + +++ +EE + + + E+ E
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 28.6 bits (64), Expect = 2.0
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+ + E + E E+ E E EE + EE +I R+A+
Sbjct: 875 TRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAE 932
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 28.8 bits (65), Expect = 2.1
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKE-EEEEKEEQKEEEEQKEEQQISRRVAD 186
S T+ + + E EE+E + EEEK+E K E KE ++ ++ ++S R+ D
Sbjct: 477 KSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILG---DKVKDVRLSHRLTD 530
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 28.0 bits (63), Expect = 2.1
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E E ++E EE E + + EE E +E E ++E +Q+ +
Sbjct: 15 RARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQE 62
Score = 28.0 bits (63), Expect = 2.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E E + E EE E E + E+ E+ + E + E EQ EQ++S
Sbjct: 19 SEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELS 64
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 28.5 bits (64), Expect = 2.1
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + ++ E+E+ E EEK EE +++ E K +EE + E+Q
Sbjct: 47 DADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQ 89
Score = 26.6 bits (59), Expect = 7.6
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI---SRRVAD 186
+ + ++ E E+E +E EE+ EE ++ E + +EE Q E Q++ +R AD
Sbjct: 47 DADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEAD 100
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 28.4 bits (64), Expect = 2.1
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+ + E+ + ++ E +E+ EEE + EE+ Q ++RV D
Sbjct: 1 MTLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLD 53
Score = 27.6 bits (62), Expect = 4.0
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
+ + +E E +E+ EEE + + EEE + +
Sbjct: 7 DLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 28.2 bits (63), Expect = 2.2
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ EE +E+E + +E+KEEEE+ E + ++E +E ++++E E
Sbjct: 108 DAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEI 152
Score = 27.4 bits (61), Expect = 3.7
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ E+++ + ++E EE E+E + +E+KEE++++E
Sbjct: 88 DEEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEV 132
Score = 27.0 bits (60), Expect = 5.0
Identities = 11/44 (25%), Positives = 31/44 (70%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E + ++EN++E+++++E E E++E E++ ++E++++E
Sbjct: 129 DDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDE 172
Score = 26.3 bits (58), Expect = 9.3
Identities = 12/39 (30%), Positives = 28/39 (71%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+E ++E+ +++E E +++E +E+E+ +E +E+EE K
Sbjct: 137 DENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 28.1 bits (63), Expect = 2.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
G+ EE E E++E +EE EE K E E+ + + E+ K
Sbjct: 68 GDMSEVEPEEPPTPEGAPAEKRELKEEGEEPKSEPEKADLEDGEKRTK 115
Score = 27.4 bits (61), Expect = 4.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E E EE E E++E ++E EE K E ++ + + E++
Sbjct: 72 EVEPEEPPTPEGAPAEKRELKEEGEEPKSEPEKADLEDGEKRTK 115
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 28.0 bits (63), Expect = 2.2
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
+ +E++E E EE E++ +K+E+ ++++ + E
Sbjct: 1 ESKSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAEA 40
Score = 26.9 bits (60), Expect = 5.2
Identities = 7/37 (18%), Positives = 23/37 (62%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+E++E E E++E++ ++E +++++ ++ E
Sbjct: 4 SDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAEA 40
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 28.4 bits (64), Expect = 2.2
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ-KEEEEQKEEQQISRRVADKD 188
EEE EE EEE KE E EKE + E++ E++ K+ ++ ++++ +
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLEL 119
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 28.4 bits (64), Expect = 2.3
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 145 EEEEKEEEEEKEEEKEEEEE 164
EE+EEEE+
Sbjct: 283 AAAAAAAAAAPAEEEEEEED 302
Score = 28.1 bits (63), Expect = 2.9
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 143 ENEEEEKEEEEEKEEEKEEEE 163
+EEE+EE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 5.4
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 149 KEEEEEKEEEKEEEEEKEE 167
EEEE+EE
Sbjct: 283 AAAAAAAAAAPAEEEEEEE 301
Score = 27.3 bits (61), Expect = 5.4
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 147 EEKEEEEEKEEEKEEEEEKEE 167
+EEEEE+++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 28.5 bits (64), Expect = 2.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ + ++++EE E + KE E +E E+ EE KE K
Sbjct: 486 MLEEEAKKDDEEVQETQLKEATELQEFMINNEDLIEEAKELFGIKS 531
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 28.5 bits (63), Expect = 2.3
Identities = 11/43 (25%), Positives = 29/43 (67%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + E + E++ K+ +K+E++EKE++++++++KE +
Sbjct: 182 ETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 27.3 bits (60), Expect = 5.9
Identities = 12/46 (26%), Positives = 31/46 (67%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ T + E+ + E+K ++ +K+E+KE+E+E+++ K++E + +
Sbjct: 181 AETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 26.6 bits (58), Expect = 8.9
Identities = 12/40 (30%), Positives = 28/40 (70%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E+ + E++ K+ ++++++EKE+E +K+++KE E K
Sbjct: 188 EKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 26.9 bits (60), Expect = 2.4
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+K +E+++E E+++EE E K+EEE E+
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFED 79
Score = 25.7 bits (57), Expect = 7.5
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++ KE++EE+EE+KEE E+ +++EE + +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVD 81
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 27.7 bits (62), Expect = 2.4
Identities = 8/49 (16%), Positives = 29/49 (59%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E I +E+ +++++ + ++ + + +++ ++E+ EE+++ EE
Sbjct: 78 EEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEE 126
Score = 26.1 bits (58), Expect = 6.6
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
++ +++ +++ +EE+ EE+ E+EE++E
Sbjct: 99 DDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional.
Length = 194
Score = 27.9 bits (62), Expect = 2.4
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE--QQISRRVADKD 188
+ E E N EE EE +EE E+ E ++ E+ E +Q+ R A+ D
Sbjct: 6 VGKDKAENSEARNSGSSAEEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFD 64
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 28.4 bits (64), Expect = 2.4
Identities = 9/51 (17%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++ ++EE E +E+++ E++ + ++ ++++E + + E + V++K
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDD-DDEEESDPEVERTSTIKEVSEK 272
Score = 28.4 bits (64), Expect = 2.7
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++EEEE +E +++E+ + ++++E+E E E +++S +
Sbjct: 224 DIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEK 272
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 28.5 bits (64), Expect = 2.4
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 115 LVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
L E+ +Q Q +E+ +E E E+ + E +E KEE EE EE+ EE E+
Sbjct: 45 LEEIVDCYREYQ--------QAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEE 96
Score = 27.0 bits (60), Expect = 6.6
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 129 EHISNTQEEEEEEEENEEEEKE--EEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E I + E ++ +E+ +E KE EE + E + +EE EE +E+ E+ EEQ
Sbjct: 46 EEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQ 97
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 28.6 bits (64), Expect = 2.4
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
++ +E + + E E + + E K+E E
Sbjct: 883 ENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDG 925
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 27.2 bits (61), Expect = 2.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EE+E+E E E+E +E + + ++ EK+++K E Q E Q+
Sbjct: 70 AKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional.
Length = 292
Score = 28.2 bits (64), Expect = 2.4
Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 146 EEEKEEEEEKEEEKEE--EEEKEEQKEEEEQKEEQQISR 182
EE EE E EE EE EE KEE EE +K Q+ SR
Sbjct: 41 AEEIEERREVREEAEEKYEEAKEEGDLEEARKYAQRSSR 79
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific phytosulfokine
precursor proteins. Phytosulfokines, are active as
either a pentapeptide or a C-terminally truncated
tetrapeptide. These compounds were first isolated
because of their ability to stimulate cell division in
somatic embryo cultures of Asparagus officinalis.
Length = 74
Score = 26.6 bits (59), Expect = 2.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 107 LLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEE 158
LLVC+ + L ++P G S + E + + +E E E E EEE
Sbjct: 3 LLVCSSSSLAAA-ARPLPTDTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 25.8 bits (57), Expect = 5.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEE 162
+ + E E ++ +E E E E E EEE
Sbjct: 23 GHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 25.8 bits (57), Expect = 5.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
E + E E K +E+E E E E E+E
Sbjct: 21 DTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 28.3 bits (64), Expect = 2.5
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
EEE+ +EE +E + + + + +K EEE+ ++
Sbjct: 178 EEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRF 219
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 28.0 bits (63), Expect = 2.6
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
Q + ++ ++E ++ EE K E+ E + E Q++ E +++
Sbjct: 27 QRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIV 74
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 27.9 bits (61), Expect = 2.7
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 111 TPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
TP E + ET ++ E +++ ++ N+ EEKE E+E KEE + E +K
Sbjct: 35 TPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEEAPKAEPEKT 94
Query: 171 E 171
E
Sbjct: 95 E 95
Score = 27.1 bits (59), Expect = 5.4
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ T E +E +EE +++ ++ K EEKE E+E KEE + E ++
Sbjct: 46 AETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEEAPKAEPEK 93
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 28.4 bits (63), Expect = 2.7
Identities = 13/51 (25%), Positives = 18/51 (35%)
Query: 124 TWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
T + G S+ E +E+ E EEE + E E E E
Sbjct: 468 TEKGGAQFSSANSLERGADEDYLIVNGTNEPYEEEVIKTNENENFPLENES 518
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 28.0 bits (63), Expect = 2.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
++ Q E EE EEEE E E+E +
Sbjct: 267 VNWLQYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 28.3 bits (63), Expect = 2.7
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEE--EKEEEEEKEEQKEEEEQKEEQQISR 182
+E + E E+ +EK + + E E E+ K+ + + E +E +++ +
Sbjct: 360 TPKEAQAEIEQKLAQEKAQLDAAVEKGELTPEQAKQIARAKLEPEERERLEK 411
>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein. This
family of proteins represents the complementary sex
determiner in the honeybee. In the honeybee, the
mechanism of sex determination depends on the csd gene
which produces an SR-type protein. Males are homozygous
while females are homozygous for the csd gene.
Heterozygosity generates an active protein which
initiates female development.
Length = 146
Score = 27.8 bits (61), Expect = 2.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
+ S ++E E++ +NE +E E E + E+E +E
Sbjct: 4 KRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSRE 45
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 27.2 bits (61), Expect = 2.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 148 EKEEEEEKEEEKEEEEE 164
++EEK+EE EEE +
Sbjct: 84 AAAKKEEKKEESEEESD 100
Score = 26.1 bits (58), Expect = 5.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 147 EEKEEEEEKEEEKEEEEE 164
++EE+KEE +EE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.1 bits (58), Expect = 6.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 151 EEEEKEEEKEEEEEKEEQ 168
+KEE+KEE EE+ +
Sbjct: 84 AAAKKEEKKEESEEESDD 101
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 28.1 bits (64), Expect = 2.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
E EEE EEE + E+EE+ E+
Sbjct: 328 ETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDED 361
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 28.2 bits (63), Expect = 2.8
Identities = 9/48 (18%), Positives = 25/48 (52%)
Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
SK T + I + E + +++++E+ E + + ++ +E+ E+
Sbjct: 236 SKRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGED 283
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 27.9 bits (62), Expect = 2.9
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E+EE E EE + EE EE ++ + + + + +
Sbjct: 72 KEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNH 114
Score = 27.5 bits (61), Expect = 3.9
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
K +T + + +EE E E + EE EE +++ + E K + E E+
Sbjct: 60 KKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
Score = 27.5 bits (61), Expect = 4.2
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++++ E+EE E +E EE E+ ++K + E + Q + V +D
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
Score = 27.1 bits (60), Expect = 5.0
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
T+++++E+EE E EE + EE +E +++ + + + + + V D
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVID 119
>gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110). This is
a family that is found predominantly at the C-terminus
of Kelch-containing proteins. However, the exact
function of this region is not known.
Length = 99
Score = 26.9 bits (60), Expect = 3.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
+EE E+ EEE+ EE KE++ E +
Sbjct: 63 REELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGR 97
Score = 26.5 bits (59), Expect = 4.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E EE E EEEE+ E+ KE+ E +
Sbjct: 60 WELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGR 97
Score = 26.5 bits (59), Expect = 4.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE E EE + E+E+EE+ EE KE++ E +
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGR 97
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 27.4 bits (61), Expect = 3.1
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
Q ++E EE N + E EE K+ + ++E++E +++ ++ E++
Sbjct: 94 QLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKE 137
Score = 26.6 bits (59), Expect = 6.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+E + E EE K+ ++ ++E++E +K ++ E+EE+K
Sbjct: 98 ELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKK 140
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 27.7 bits (62), Expect = 3.1
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E+ +E ++ KE ++E E +E + K+ +K +E+Q E R
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQR 115
>gnl|CDD|220223 pfam09405, Btz, CASC3/Barentsz eIF4AIII binding. This domain is
found on CASC3 (cancer susceptibility candidate gene 3
protein) which is also known as Barentsz (Btz). CASC3 is
a component of the EJC (exon junction complex) which is
a complex that is involved in post-transcriptional
regulation of mRNA in metazoa. The complex is formed by
the association of four proteins (eIF4AIII, Barentsz,
Mago, and Y14), mRNA, and ATP. This domain wraps around
eIF4AIII and stacks against the 5' nucleotide.
Length = 116
Score = 27.0 bits (60), Expect = 3.2
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E E ++ E E +E+KE + + E+ ++E+ + + R
Sbjct: 2 VESERQSGRTPSAEPTEPKEDKERKRREHEKYDDEDDENPAFVPTR 47
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 27.7 bits (62), Expect = 3.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
EE+EEEN +E+ E +E E+E E E+ + E ++ +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETK 167
Score = 27.0 bits (60), Expect = 7.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE+ EE E++ E E+ EEE + E+ +++E +E +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETK 167
Score = 26.6 bits (59), Expect = 9.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE+E E ++++ E EE EEE E EE ++E +E +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKY 168
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 27.3 bits (61), Expect = 3.4
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 133 NTQEEEEEEEENEEEEKEEEE 153
Q EEEEEEN +E+EEEE
Sbjct: 69 RVQSVEEEEEENGNDEEEEEE 89
>gnl|CDD|225664 COG3122, COG3122, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 215
Score = 27.6 bits (61), Expect = 3.4
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
Q S E EE + E+ E ++ E++++ KE + Q ++
Sbjct: 64 QRLAKKSRVDAREAYRIAAEENKAEQLERDKQLSEQQKQAALAKEYKAQVKQ 115
Score = 27.6 bits (61), Expect = 3.9
Identities = 13/70 (18%), Positives = 29/70 (41%)
Query: 118 VNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
V SK + + E EE K E+ E++++ E++++ +E + + +
Sbjct: 55 VTSKKRAKVQRLAKKSRVDAREAYRIAAEENKAEQLERDKQLSEQQKQAALAKEYKAQVK 114
Query: 178 QQISRRVADK 187
Q I +
Sbjct: 115 QLIEMNRLNI 124
>gnl|CDD|177099 MTH00001, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 99
Score = 26.6 bits (59), Expect = 3.4
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 13/47 (27%)
Query: 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVL 107
++L I+ +G+ G +IL N + +M +SI +L++L
Sbjct: 6 LILVVILFLLGIWG------IIL------NRGHFIIMLVSI-ELVLL 39
>gnl|CDD|215419 PLN02784, PLN02784, alpha-amylase.
Length = 894
Score = 28.1 bits (62), Expect = 3.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+E +E+++ E + E+K + EE I +RVA +
Sbjct: 241 DEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDN 282
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 27.9 bits (61), Expect = 3.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEE-EKEEQKEEEEQKEEQQ 179
E E EE + E E+ E K EE E+ + EE K EEQK E++
Sbjct: 206 EGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEK 250
Score = 26.7 bits (58), Expect = 9.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E E+ E EE E+ + EE K EE+K E+K EE
Sbjct: 218 EPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 27.5 bits (61), Expect = 3.5
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
E+ + + + KE++K+ EEEK QK E + ++ S +V+ K
Sbjct: 94 EDLDAKAAKFKEKQKQLEEEKRRQKIEMWDRMQEGKSYKVSAK 136
>gnl|CDD|147845 pfam05914, RIB43A, RIB43A. This family consists of several
RIB43A-like eukaryotic proteins. Ciliary and flagellar
microtubules contain a specialised set of
protofilaments, termed ribbons, that are composed of
tubulin and several associated proteins. RIB43A was
first characterized in the unicellular biflagellate,
Chlamydomonas reinhardtii although highly related
sequences are present in several higher eukaryotes
including humans. The function of this protein is
unknown although the structure of RIB43A and its
association with the specialised protofilament ribbons
and with basal bodies is relevant to the proposed role
of ribbons in forming and stabilising doublet and
triplet microtubules and in organising their
three-dimensional structure. Human RIB43A homologues
could represent a structural requirement in centriole
replication in dividing cells.
Length = 379
Score = 27.7 bits (62), Expect = 3.5
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 111 TPTVLVEVNSKPETWQMGEHISNTQEEEEEEEE------NEEEEKEEEEEKEEEKEEEEE 164
+P L + E Q+ E +EE+ E+E N+ E +E +E
Sbjct: 278 SPEQLAAIRKGQEQ-QLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELR 336
Query: 165 KEEQKEEEEQKEEQQISRRVADK 187
K+ ++ +EQ+ + +K
Sbjct: 337 KQLDSANQQLAKEQKAQQEYLNK 359
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 27.6 bits (61), Expect = 3.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKE 166
EEE E+++ +EEKE +K+E ++E
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
Score = 26.8 bits (59), Expect = 6.9
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 152 EEEKEEEKEE-EEEKEEQKEEEEQKE 176
EEEKE++K +EEKE +K+E ++E
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
Score = 26.8 bits (59), Expect = 6.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEE 161
I N EEE+E+++N +E++E ++KE K E
Sbjct: 89 IKNHLEEEKEKKKNLNKEEKEAKKKERAKRE 119
Score = 26.8 bits (59), Expect = 7.6
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEE 173
E+E+E++K KEE+E K++++ + E
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
Score = 26.4 bits (58), Expect = 7.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEE 171
EEEKE+++ +E++E ++KE K E
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
Score = 26.4 bits (58), Expect = 8.7
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQK 175
EEE+EK++ +EE++ ++KE +++
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 27.8 bits (62), Expect = 3.6
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+ QEE+ + + EE E EEE ++E+EEQ ++ +R+A
Sbjct: 96 VETQQEEKAVNPFTPQPGQREERRPTLESEEEWRARLKREQEEQYLRERQRQRMA 150
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 28.0 bits (62), Expect = 3.6
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
EE E++ ENE E EEE + ++K + E + Q E+E+Q +E
Sbjct: 120 EELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKE 161
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 27.7 bits (62), Expect = 3.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE--EEQKEEQQ 179
+ +E E K+ EE +K E EEK+ Q++ EQ+ +QQ
Sbjct: 166 QARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQ 208
>gnl|CDD|241384 cd13230, PH1_SSRP1-like, Structure Specific Recognition protein 1
(SSRP1) Pleckstrin homology (PH) domain, repeat 1.
SSRP1 is a component of FACT (facilitator of chromatin
transcription), an essential chromatin reorganizing
factor. In yeast FACT (yFACT) is composed of three
proteins: Spt16/Cdc68, Pob3, and Nhp6. In metazoans the
Pob3 and Nhp6 orthologs are fused to form SSRP1/T160 in
human and mouse, respectively. The middle domain of the
Pob3 subunit (Pob3-M) has an unusual double pleckstrin
homology (PH) architecture. yFACT interacts in a
physiologically important way with the central
single-strand DNA binding factor RPA to promote a step
in DNA Replication. Coordinated function by yFACT and
RPA is important during nucleosome deposition. These
results support the model that the FACT family has an
essential role in constructing nucleosomes during DNA
replication, and suggest that RPA contributes to this
process. Members of this cd are composed of the first
PH-like repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 137
Score = 27.1 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
+ EE E E EEE EE+ + + EKE E
Sbjct: 85 DKDEEIELELNLTEEELEEKYKGKLEKEYEG 115
Score = 26.7 bits (60), Expect = 4.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
++EE E E N EE+ EE+ K + ++E E +
Sbjct: 85 DKDEEIELELNLTEEELEEKYKGKLEKEYEGPLYE 119
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 26.8 bits (60), Expect = 3.7
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKE-----EEEEKEEQKEEEEQKEEQQIS 181
+EE E+E E + E E KE E E E EK+ +KE EE+ +E + S
Sbjct: 35 KEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDELKRS 85
Score = 25.6 bits (57), Expect = 8.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
EE EKE EE + + + E +E E + + E++I + +K
Sbjct: 36 EEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEK 78
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 27.9 bits (62), Expect = 3.8
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+E EE+ E EE+K+ E E+ + E +E E E K +I+ R+ +
Sbjct: 142 DEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKLTHEIATRIRE 192
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 26.9 bits (60), Expect = 3.9
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 16/61 (26%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEE----------------KEEEEEKEEQKEEEEQKEEQQ 179
EE ++EEE E+EEKE+E E +E+ KE K +KE++++K+++
Sbjct: 28 EEYDKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKEL 87
Query: 180 I 180
Sbjct: 88 K 88
>gnl|CDD|107059 PHA01746, PHA01746, hypothetical protein.
Length = 131
Score = 26.8 bits (59), Expect = 4.0
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
N +EEE++ E +EE++E+ EK +K EEE
Sbjct: 99 NAIQEEEDDMEQQEEKEEKGREKGRKKNVEEE 130
Score = 26.4 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+EEE++ E++EE+EEK EK ++ EE+
Sbjct: 102 QEEEDDMEQQEEKEEKGREKGRKKNVEEE 130
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 27.7 bits (62), Expect = 4.0
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
++E E E + ++ EK E+ EE +E ++E E+++
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKR 273
Score = 27.0 bits (60), Expect = 7.7
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
E + + E + EK E +EE +E E E+E+++
Sbjct: 233 EEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKR 273
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 27.7 bits (62), Expect = 4.1
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E E + EE E+ EEKE K++++E++++++E +K
Sbjct: 169 NAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEK 209
>gnl|CDD|219996 pfam08738, Gon7, Gon7 family. In S. cerevisiae Gon7 is a member of
the KEOPS protein complex. A protein complex proposed to
be involved in transcription and promoting telomere
uncapping and telomere elongation.
Length = 97
Score = 26.7 bits (59), Expect = 4.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 153 EEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E EE+K++ K ++E E KEE+
Sbjct: 69 ERMEEDKKKAAAKGRGEKEIEDKEEE 94
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 27.6 bits (61), Expect = 4.1
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E + E E EKE+ K ++ EE K + K
Sbjct: 30 HGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAK 70
>gnl|CDD|151173 pfam10669, Phage_Gp23, Protein gp23 (Bacteriophage A118). This is
the highly conserved family of the major tail subunit
protein.
Length = 121
Score = 27.0 bits (59), Expect = 4.2
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 82 ILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEE 141
+ K D + +F L +A ++LL+ T + + SK +M E +++ E E
Sbjct: 5 LTKVFDYALAKEMFFAALFVALFIILLIITKRIWDD--SKIVRVEMKEE----RDKMETE 58
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E ++E +EE +K E+++ K+ + ++QQ
Sbjct: 59 REKRDKESKEERDKFISTMNEQQRLMDKQNDMMGQQQQ 96
>gnl|CDD|191696 pfam07168, Ureide_permease, Ureide permease. Heterocyclic nitrogen
compounds may serve as nitrogen sources or nitrogen
transport compounds in plants that are not able to fix
nitrogen. This family represents ureide permease, a
transporter of a wide spectrum of oxo derivatives of
heterocyclic nitrogen compounds, including allantoin,
uric acid and xanthine; it has 10 putative transmembrane
domains with a large cytosolic central domain containing
a 'Walker A' motif. Ureide permease is likely to
transport other purine degradation products when
nitrogen sources are low. Transport is dependent on
glucose and a proton gradient. The family is found in
bacteria, plants and yeast.
Length = 336
Score = 27.5 bits (61), Expect = 4.3
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
H SN + +E+ E + E E ++ + E + +
Sbjct: 148 HSSNAADNKEKLNAFENYQSEFSISSLELMSRMNSEDLENGEADDAKA 195
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 27.9 bits (62), Expect = 4.4
Identities = 10/62 (16%), Positives = 28/62 (45%)
Query: 113 TVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+ +S ++ +E+ +++ E + E E+E E K E ++ ++E +
Sbjct: 418 NQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQ 477
Query: 173 EQ 174
++
Sbjct: 478 DK 479
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 27.3 bits (61), Expect = 4.4
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
+ + ++EE++ KEE++ + EKE+ EE+
Sbjct: 89 QMFAYFKAQKEEKKAMS--KEEKKAIKAEKEKLEEE 122
Score = 26.5 bits (59), Expect = 8.8
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ ++EE+K KEE++ + +KE+ E++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
>gnl|CDD|218657 pfam05615, THOC7, Tho complex subunit 7. The Tho complex is
involved in transcription elongation and mRNA export
from the nucleus.
Length = 132
Score = 26.9 bits (60), Expect = 4.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
N +E E E+E EE E E K+E +E ++E EE K + ++E
Sbjct: 64 MNERERENYEQEKEEIETTIENAKDEIEELKKELEEAKRIRKNRKE 109
>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function prediction
only].
Length = 116
Score = 26.6 bits (59), Expect = 4.5
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
++EE EE + E + + + +E+ E +EEQ +EE+ ++Q I R++
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQKQAILRQI 49
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 27.3 bits (61), Expect = 4.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
EEE KE EKE +E EE ++ E E
Sbjct: 273 EEELKEIEKEVRKEIEEAVKKAESDPEPNPE 303
Score = 26.9 bits (60), Expect = 7.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
+EEE KE E+E +E EE +K E E
Sbjct: 272 SEEELKEIEKEVRKEIEEAVKKAESDPE 299
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 27.3 bits (61), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
E E+ +E E EK E + +EE E E+ +E K E+
Sbjct: 125 EIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREE 167
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 27.3 bits (60), Expect = 4.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 149 KEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
K +E+ EEKE +E+ EQ + ++ EQQ
Sbjct: 96 KRKEKRLLEEKERQEQMAEQLQRISEQNEQQ 126
Score = 26.6 bits (58), Expect = 8.3
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+G I +E+ EE+ +E+ E+ ++ E+ E++ E EE +E
Sbjct: 90 IGLPIVKRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEP 141
Score = 26.6 bits (58), Expect = 9.7
Identities = 9/47 (19%), Positives = 25/47 (53%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+E+E +E+ E+ ++ E+ +++ E + +E +E Q ++
Sbjct: 104 EEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGVNVA 150
>gnl|CDD|226249 COG3726, AhpA, Uncharacterized membrane protein affecting hemolysin
expression [General function prediction only].
Length = 214
Score = 27.1 bits (60), Expect = 4.7
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 85 SKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEEN 144
+ + N+TNI + L ++ L++ ++ +L + WQ ++ + +EE+E+
Sbjct: 155 QQQVDNTTNILRLMLLLS-LLIGVLLARLLL---QGRRTRWQQTPNLLLAVKPVKEEDES 210
Query: 145 EEEE 148
E++E
Sbjct: 211 EKKE 214
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 27.4 bits (61), Expect = 4.7
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + ++ EE +E +E E EE + +E E+ Q+ +Q
Sbjct: 151 EDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQS 201
Score = 27.4 bits (61), Expect = 5.6
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ I E+ E+++ E+ +E + E E EE + ++ E+ +SR
Sbjct: 139 DDEDDIIYDGIFEDRTRESQDMEENDEVD-EVEVEEVPDDYGANLAVDEPEQSTMSR 194
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 27.0 bits (60), Expect = 4.7
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
++EE+ E+ +E + E +E K ++ E + E
Sbjct: 16 LDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARME 57
Score = 26.6 bits (59), Expect = 6.8
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
++EE+ EE+ ++E ++ E EE +
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYN 47
>gnl|CDD|150467 pfam09803, DUF2346, Uncharacterized conserved protein (DUF2346).
Members of this family of proteins have no known
function.
Length = 80
Score = 25.9 bits (57), Expect = 4.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEK-EEQKEEEEQKE 176
ENE+ KE E+ KE +E+ E + EE EQK+
Sbjct: 46 ENEQHRKELEDFKERLREKHEARLLRAMEEAEQKK 80
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 27.7 bits (61), Expect = 4.9
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+P+ + + Q E+ E E + E ++ +E+E ++ + K +Q++
Sbjct: 80 RPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQEL 139
Query: 181 SR 182
+R
Sbjct: 140 AR 141
>gnl|CDD|184861 PRK14859, tatA, twin arginine translocase protein A; Provisional.
Length = 63
Score = 25.5 bits (56), Expect = 4.9
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEE 157
+G+ I N ++ E+EE E + ++E++K++
Sbjct: 32 LGKSIKNFKKATSEKEEIEIKPTKKEDKKKK 62
>gnl|CDD|219905 pfam08564, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37 pfam03234.
Length = 89
Score = 26.2 bits (58), Expect = 5.0
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
E EKE +E +EE EEE EKEE +EE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 27.4 bits (62), Expect = 5.0
Identities = 8/40 (20%), Positives = 11/40 (27%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
E++ E E +E K EE E
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETISF 570
Score = 27.4 bits (62), Expect = 5.1
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
E+++ E E KE + E+ + IS
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETIS 569
Score = 26.7 bits (60), Expect = 8.5
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
E E ++E + EE
Sbjct: 536 EALIEASKEAAAAKAAAAAAAAPLAEEPIA 565
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 26.8 bits (60), Expect = 5.0
Identities = 11/54 (20%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEE-EEKEEQKEEEEQKEEQQISRRVADK 187
++ +++ E +E++E++ ++K +E + K+++ +++ QK +Q+ +++ DK
Sbjct: 46 EKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQKILDK 99
Score = 26.0 bits (58), Expect = 8.6
Identities = 10/44 (22%), Positives = 30/44 (68%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E E++EKE +++ +E + ++++ ++ ++ +Q+E Q+I ++
Sbjct: 57 EAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQKILDKI 100
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 27.6 bits (61), Expect = 5.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEE 173
+K E KE KE++EE E+ KE+
Sbjct: 602 KKVLESPKEPSKEKKEEDEDTKEKAP 627
Score = 26.8 bits (59), Expect = 9.0
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKE-EEKEEEEEKEEQKEEEEQKEEQQISR 182
++ + + E EE E E E E + EE ++ E++ R
Sbjct: 357 PASIYGSVPDLIRHTPLEDVEEYEPLFPEDESEIAVKPPTEESSRRPEEEKHR 409
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 27.6 bits (62), Expect = 5.0
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
Q+ ++I+ +E E E+ EE +E E+ + E +E EE + + E+
Sbjct: 107 QLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQ 152
Score = 26.8 bits (60), Expect = 8.6
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 133 NTQEEEEEEEENEE-EEKEEEEEKEEEKEEEEEKE-EQKEEEEQKEEQQ 179
N Q ++ + N+E E+E+ EE +E E+ + E +++EE + + EQQ
Sbjct: 105 NVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQ 153
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 27.3 bits (61), Expect = 5.1
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 116 VEVNSKPETWQMGEHISNTQEE-EEEEEENEEEEKEEEEEKEEEKEEEEEKEE------- 167
E K W+ I +E E +E+ E+ KEE EK +EK E+E K+E
Sbjct: 294 EEKTKKFGLWRWSLPIEIVKETYYEVKEKVEKVTKEEAIEKAKEKAEKELKKELDPNAKI 353
Query: 168 --QKEEEEQKEEQQISRRV 184
K E+ E ++ V
Sbjct: 354 VSDKILSERVEGGKVKVTV 372
>gnl|CDD|192481 pfam10197, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved region
at the N-terminal end of a family of proteins referred
to as CIRs (CBF1-interacting co-repressors). CBF1
(centromere-binding factor 1) acts as a transcription
factor that causes repression by binding specifically to
GTGGGAA motifs in responsive promoters, and it requires
CIR as a co-repressor. CIR binds to histone deacetylase
and to SAP30 and serves as a linker between CBF1 and the
histone deacetylase complex.
Length = 37
Score = 24.9 bits (55), Expect = 5.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 149 KEEEEEKEEEKEEEEEKEEQKEE 171
+ E++ EE+K+ EE ++E +EE
Sbjct: 15 EAEQKALEEQKKIEELRKEIEEE 37
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 27.4 bits (61), Expect = 5.1
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 113 TVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
VL+++N+KP+T M E + ++ E ++ + + + + E Q
Sbjct: 827 VVLMDINAKPQTESM-EAFEEMIRPFRLHKTEKDREAKDPKMTWTKPWKITDAELQSNVR 885
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 27.6 bits (62), Expect = 5.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+EE EE E E E EE ++ +K EE + E + E + +
Sbjct: 221 KEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSK 268
Score = 27.2 bits (61), Expect = 6.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ +EE EE +E E EE KE K+ EE E E + E+
Sbjct: 219 EIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERA 263
Score = 26.8 bits (60), Expect = 8.8
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ EE ++ +EE E+ E+E +E EE+ + E E ++ EQ+I R
Sbjct: 80 SVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIER 125
>gnl|CDD|198151 smart01083, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved region
at the N-terminal end of a family of proteins referred
to as CIRs (CBF1-interacting co-repressors). CBF1
(centromere-binding factor 1) acts as a transcription
factor that causes repression by binding specifically to
GTGGGAA motifs in responsive promoters, and it requires
CIR as a co-repressor. CIR binds to histone deacetylase
and to SAP30 and serves as a linker between CBF1 and the
histone deacetylase complex.
Length = 37
Score = 24.8 bits (55), Expect = 5.2
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 154 EKEEEKEEEEEKEEQKEEEEQKEEQQ 179
++ + E++ E+E++K EE +KE ++
Sbjct: 11 KRVWKAEQKAEEEKKKIEERRKEIEK 36
Score = 24.8 bits (55), Expect = 5.9
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEE 171
K E++ +EE+K+ EE ++E ++E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 24.4 bits (54), Expect = 7.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKE 160
+ E++ EE++K EE KE EKE
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 24.4 bits (54), Expect = 8.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEE 162
Q+ + E+ EEEK++ EE+ +E E+E
Sbjct: 10 QKRVWKAEQKAEEEKKKIEERRKEIEKE 37
Score = 24.0 bits (53), Expect = 8.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKE 166
E++ EEE++K EE+ +E EKE
Sbjct: 16 AEQKAEEEKKKIEERRKEIEKE 37
Score = 24.0 bits (53), Expect = 9.0
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 153 EEKEEEKEEEEEKEEQKEEEEQKE 176
+ E++ EEE++K E++ +E +KE
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 27.5 bits (61), Expect = 5.3
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 135 QEEEEEEEENEEEEKEE---------EEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
Q EEE E+E E+ KEE EE +E +++EE ++ +EE++ +++ +
Sbjct: 383 QIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKMEAS 442
Query: 186 D 186
+
Sbjct: 443 E 443
Score = 26.7 bits (59), Expect = 7.6
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK--------EEQKEEEEQKEE 177
E + EE E+ E + EEE EKE EK +EE+ EE +E EQ EE
Sbjct: 364 ERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEE 420
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 27.1 bits (60), Expect = 5.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
+ E +++E + EE +E+ +K EK EE +K
Sbjct: 18 KSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKK 54
>gnl|CDD|204122 pfam09072, TMA7, Translation machinery associated TMA7. TMA7 plays
a role in protein translation. Deletions of the TMA7
gene results in altered protein synthesis rates.
Length = 63
Score = 25.6 bits (56), Expect = 5.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 153 EEKEEEKEEEEEKEEQKEEEEQKEE 177
++KE ++E+ K++QKEE + +E
Sbjct: 17 QKKELDEEDLAFKQKQKEEAKALKE 41
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 27.1 bits (61), Expect = 5.4
Identities = 18/48 (37%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE-QQIS 181
++E E++E EEKE+E +++ EE+E+E ++ EEQ++E ++IS
Sbjct: 97 KDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELERIS 144
>gnl|CDD|218576 pfam05395, DARPP-32, Protein phosphatase inhibitor 1/DARPP-32.
This family consists of several mammalian protein
phosphatase inhibitor 1 (IPP-1) and dopamine- and
cAMP-regulated neuronal phosphoprotein (DARPP-32)
proteins. Protein phosphatase inhibitor-1 is involved in
signal transduction and is an endogenous inhibitor of
protein phosphatase-1. It has been demonstrated that
DARPP-32, if phosphorylated, can inhibit
protein-phosphatase-1. DARPP-32 has a key role in many
neurotransmitter pathways throughout the brain and has
been shown to be involved in controlling receptors, ion
channels and other physiological factors including the
brain's response to drugs of abuse, such as cocaine,
opiates and nicotine. DARPP-32 is reciprocally regulated
by the two neurotransmitters that are most often
implicated in schizophrenia - dopamine and glutamate.
Dopamine activates DARPP-32 through the D1 receptor
pathway and disables DARPP-32 through the D2 receptor.
Glutamate, acting through the N-methyl-d-aspartate
receptor, renders DARPP-32 inactive. A mutant form of
DARPP-32 has been linked with gastric cancers.
Length = 170
Score = 26.8 bits (59), Expect = 5.5
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
H+ + EE + EE+E + +E E E E Q EE Q
Sbjct: 90 HLQSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQ 139
>gnl|CDD|215252 PLN02458, PLN02458, transferase, transferring glycosyl groups.
Length = 346
Score = 27.2 bits (60), Expect = 5.5
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 145 EEEEKEEEEEKEEEKEEEEEK 165
E E EKEEEE K
Sbjct: 87 PARSAESETASLLEKEEEEPK 107
Score = 27.2 bits (60), Expect = 6.5
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 112 PTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEK 159
P ++ V + P + + N Q + E E EKEEE+
Sbjct: 58 PVEMLHVATTPHHSNLNRTLINAQTPVPAPARSAESETASLLEKEEEE 105
>gnl|CDD|220438 pfam09845, DUF2072, Zn-ribbon containing protein (DUF2072). This
archaeal protein has no known function.
Length = 121
Score = 26.3 bits (58), Expect = 5.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
E + + + EEK E+ E E EE E ++ +E+ + R+
Sbjct: 35 ERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERI 76
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 27.2 bits (61), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKE 170
E +E+E E++EE EE E KEE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed.
Length = 147
Score = 26.6 bits (60), Expect = 5.6
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKEEQ--QISRRVADKD 188
E E E + EE E + E+ E I + +
Sbjct: 48 EARRAELEAKAAEELAEAEALAEKLEGLTVTIKAKAGEDG 87
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 27.1 bits (60), Expect = 5.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKE 170
E+EK++ KEE+K +EEK+++ E
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAE 118
>gnl|CDD|215406 PLN02761, PLN02761, lipase class 3 family protein.
Length = 527
Score = 27.3 bits (60), Expect = 5.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
S TQ+++ ++ + + K EEE +EE +E+E E E
Sbjct: 54 STTQQKQSNKQTHVSDNKREEEPEEELEEKEVSLREIWRE 93
Score = 26.9 bits (59), Expect = 8.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEE 157
H+S+ + EEE EEE EE+E E E
Sbjct: 66 HVSDNKREEEPEEELEEKEVSLREIWRE 93
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 27.0 bits (60), Expect = 5.7
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 118 VNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ + E+ E + EEE E E E+E E E+E + + E + + +EE++ E
Sbjct: 135 LKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEARGRAKEERENE 194
Query: 178 QQISRRVADK 187
+ K
Sbjct: 195 DINREMLKLK 204
Score = 26.7 bits (59), Expect = 9.0
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 131 ISNTQEE--EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+S QE+ + E E +E + ++ + + E+ E +E +K +EQ +++Q + D+
Sbjct: 56 LSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDE 114
>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 27.3 bits (60), Expect = 5.7
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
E E E E E E E E E E E E E E E Q ++
Sbjct: 411 EPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPNQD 447
>gnl|CDD|167284 PRK01833, tatA, twin arginine translocase protein A; Provisional.
Length = 74
Score = 25.6 bits (56), Expect = 5.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+++ K+ E EK E KE +++ KE+E+
Sbjct: 44 ADDKPKDAEFEKVEAKEAASTEQKAKEKEQ 73
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 27.1 bits (60), Expect = 5.8
Identities = 8/59 (13%), Positives = 27/59 (45%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
EH + +++E+ + ++ +E+ K++E++ +++++ Q D
Sbjct: 157 DEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKD 215
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 26.1 bits (58), Expect = 5.9
Identities = 4/40 (10%), Positives = 23/40 (57%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ E+ ++E++E+E++ + +++++ ++ + +
Sbjct: 45 APAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLD 84
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 27.1 bits (61), Expect = 5.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
E E EE E +E+ + E + + E + E+ E E ++ + ++ +
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEK 47
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 26.9 bits (60), Expect = 6.0
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++ E+E EE E+ ++ ++ EEKEE K + + + + + D++
Sbjct: 58 DDYREKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDRE 104
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 27.3 bits (61), Expect = 6.1
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE-EQKEEQQISRR 183
++ E + E+N E EEK+ +K EE + E + Q+ E
Sbjct: 391 EQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEF 440
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein;
Provisional.
Length = 558
Score = 27.4 bits (61), Expect = 6.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 160 EEEEEKEEQKEEEEQKEEQQI 180
+ E EEQ EE +EE+QI
Sbjct: 392 AKTETLEEQTLEEAIEEEKQI 412
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 26.3 bits (58), Expect = 6.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 135 QEEEEEEEENEEEEKEEEEEKE 156
++EEE+EEE E KEEE E
Sbjct: 96 KKEEEKEEEIPEPTKEEELLGE 117
Score = 25.9 bits (57), Expect = 9.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 155 KEEEKEEEEEKEEQKEEEEQKE 176
K+EE++EEE E KEEE E
Sbjct: 96 KKEEEKEEEIPEPTKEEELLGE 117
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 27.2 bits (60), Expect = 6.3
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
++ + Q EE+ K E E +E +E+ + E +EE+Q R+
Sbjct: 779 ELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
Query: 186 DK 187
+K
Sbjct: 839 EK 840
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 27.3 bits (61), Expect = 6.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EE+E E+ E+ EE E+ +E E E++ + E K E+
Sbjct: 167 VNDISEEQEFEKFEEAINEEVEKAAQEALEAEKKLKAESPKVEKP 211
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 26.3 bits (59), Expect = 6.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E E + E EE E EE+ Q ++E +K + + A
Sbjct: 81 ERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERA 121
>gnl|CDD|216868 pfam02084, Bindin, Bindin.
Length = 239
Score = 26.8 bits (59), Expect = 6.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 128 GEHISNTQEEEEEEEEN 144
+ +S QEEEEEEE++
Sbjct: 152 EQVLSAMQEEEEEEEQD 168
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 27.3 bits (61), Expect = 6.5
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
+ + E++++ E + E+E +E+ E+++
Sbjct: 1355 RPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 26.9 bits (60), Expect = 8.3
Identities = 5/29 (17%), Positives = 21/29 (72%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
+ + E++++ E ++ E++++E +E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 27.2 bits (61), Expect = 6.5
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
+S +E++ EE+E EE ++EEE+EEE+ ++
Sbjct: 322 LLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDD 355
Score = 26.4 bits (59), Expect = 9.8
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++++ EEKE+ EE +++EE++EEE + I
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLID 360
>gnl|CDD|148072 pfam06244, DUF1014, Protein of unknown function (DUF1014). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 26.2 bits (58), Expect = 6.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE+ E+E+++ E EE+ K+ E +E ++R ++
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEG 47
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 27.2 bits (60), Expect = 6.5
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 94 IFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEE 153
IF++ L++ +L C + +M + EE+E E ++ E +
Sbjct: 9 IFILMLAV----LLFSCKKED-----KESGLREMRVEKFSKMEEKENEFLSKPEYNTHVK 59
Query: 154 EKEEEKEEEEEKEEQKEEEEQKE 176
E+ KE + + E +
Sbjct: 60 SPEQIKELSNKISGVSGKGESDK 82
>gnl|CDD|216295 pfam01093, Clusterin, Clusterin.
Length = 434
Score = 27.0 bits (60), Expect = 6.6
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
QM + T+EE + E+ K+E+EE + E EEK E++EE
Sbjct: 27 QMKTLMERTEEEHKNLMSTLEKTKKEKEEALKLANEVEEKLEEEEE 72
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 27.1 bits (60), Expect = 6.6
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
T+ E+++ E+ + + EEE + +++EEE E +K
Sbjct: 12 TKREKKKREKKSIRQSKLEEELNKLEKKEEEAECKK 47
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 27.3 bits (60), Expect = 6.9
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
K E Q+G ++ Q+ EE+ E E + E ++ KE++ E E+++Q++E+ I
Sbjct: 870 KSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929
Query: 181 SRR 183
S +
Sbjct: 930 SSK 932
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 27.2 bits (60), Expect = 6.9
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
S+ +++ +E+ EK+ +K+++KEEEE+ E+ + + + + R+ D D
Sbjct: 4 ESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLK-GDLELLVERIQDPD 60
>gnl|CDD|191365 pfam05756, S-antigen, S-antigen protein. S-antigens are heat
stable proteins that are found in the blood of
individuals infected with malaria.
Length = 94
Score = 25.7 bits (56), Expect = 6.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
G+ + QEE E E ++EE+ EE +EE E + E
Sbjct: 54 GQKYEDLQEEGEGENDDEEDSNSEESNNDEENGLIEGQGE 93
Score = 25.3 bits (55), Expect = 9.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ E+ +EE E E + EE+ EE +EE
Sbjct: 55 QKYEDLQEEGEGENDDEEDSNSEESNNDEENG 86
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 27.1 bits (60), Expect = 7.1
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ-KEEQQISRRVAD 186
EE + E + E EEE + EK + K E EQ K + +RRV D
Sbjct: 445 NEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGD 494
>gnl|CDD|236836 PRK11072, PRK11072, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Reviewed.
Length = 943
Score = 27.1 bits (61), Expect = 7.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
++EEE EE E+ E ++ +EE+ E + Q+ R+A
Sbjct: 438 DDEEETEEEAASEQWRELWQDALDEEDATPLLAELGFDDPAQVLARLAA 486
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 26.9 bits (59), Expect = 7.2
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE---EEEQKEEQQISRRVADKD 188
E E + EE +EE+ E E+ EE+ + E + VA K+
Sbjct: 351 ETAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKE 408
Score = 26.9 bits (59), Expect = 7.7
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
E E E E + E EE +E++ E ++ EE+ ++
Sbjct: 341 WHEPLFEVGPETAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDD 388
>gnl|CDD|211344 cd02867, PseudoU_synth_TruB_4, Pseudouridine synthase homolog 4.
This group consists of Eukaryotic TruB proteins similar
to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4,
makes psi55 in the T loop of both cytoplasmic and
mitochondrial tRNAs. Psi55 is almost universally
conserved. Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule to
pseudouridines (5-ribosyluracil, psi).
Length = 312
Score = 27.0 bits (60), Expect = 7.2
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
+G+ + E E E + EE E EE + + E EE+ E+
Sbjct: 208 MLGKELKTFAEVTELTATAEGDPVEEVEATHEESKRKSEVEEEANEK 254
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 25.5 bits (56), Expect = 7.3
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
+ +EE E EEEEK E +E EE+E+ E+ ++EE+
Sbjct: 26 KKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDG 70
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 27.1 bits (60), Expect = 7.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 145 EEEEKEEEEEKEEEK----EEEEEKEEQKEEEEQKEEQQISRRV 184
E+ E+E+ E K+ K E + KEE ++ E E Q SRR+
Sbjct: 10 EKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRL 53
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 27.1 bits (60), Expect = 7.4
Identities = 9/38 (23%), Positives = 25/38 (65%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+++ +E + + E++ +E+E ++E E+E+E E++
Sbjct: 873 LTDLEEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 26.8 bits (59), Expect = 7.5
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEE-EKEEEEEKEEQKEEEE 173
++ +S Q++++ + E+ K E + + EK+ EEK+ +KEEEE
Sbjct: 463 KLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEE 511
>gnl|CDD|130844 TIGR01784, T_den_put_tspse, conserved hypothetical protein
(putative transposase or invertase). Several lines of
evidence suggest that members of this family (loaded as
a fragment mode model to find part-length matches) are
associated with transposition, inversion, or
recombination. Members are found in small numbers of
genomes, but in large copy numbers in many of those
species, including over 30 full length and fragmentary
members in Treponema denticola. The strongest
similarities are usually within rather than between
species. PSI-BLAST shows similarity to proteins
designated as possible transposases, DNA invertases
(resolvases), and recombinases. In the oral pathogenic
spirochete Treponema denticola, full-length members are
often found near transporters or other membrane
proteins. This family includes members of the putative
transposase family pfam04754.
Length = 270
Score = 26.6 bits (59), Expect = 7.5
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 115 LVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEK---EEEEEKEEQKEE 171
L++ + I Q+ EEE + KE E ++ EK + +EE KEE
Sbjct: 170 LLKGKDNQSVNLIFLQIPFIQKAEEEIKTLLLSSKELELYEQREKYMTDAISAEEEGKEE 229
Query: 172 EEQKEEQQISRRVA 185
++ + A
Sbjct: 230 GIEEGILEAKLETA 243
>gnl|CDD|188409 TIGR03894, chp_P_marinus_1, conserved hypothetical protein,
TIGR03894 family. This protein family is restricted to
the Prochlorococcus and Synechococcus lineages of the
Cyanobacteria, and is sporadic in those lineages.
Members average 100 amino acids in length, including a
30-residue, highly polar, low complexity region
sandwiched between an N-terminal region of about 60
residues and a C-terminal [KR]VVR[KR]RS motif, both
well-conserved. The function is unknown [Hypothetical
proteins, Conserved].
Length = 95
Score = 25.6 bits (56), Expect = 7.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
E+E ++EENE E+ E +E+ E E E E
Sbjct: 58 EQEPDDEENEGEDSETKEDSESESESSRE 86
>gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region. This region is
found in plant seed storage proteins, N-terminal to the
Cupin domain (pfam00190). In Macadamia integrifolia,
this region is processed into peptides of approximately
50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C
motif. These peptides exhibit antimicrobial activity in
vitro.
Length = 147
Score = 26.2 bits (57), Expect = 7.9
Identities = 12/47 (25%), Positives = 29/47 (61%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ E+++ E KE+ +E+++++ + EE +++ E+ Q+ QQ R
Sbjct: 26 GQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPR 72
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37.
Length = 93
Score = 25.4 bits (56), Expect = 8.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
E+E E KE +E+ E E+E E+E EE++++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 26.1 bits (58), Expect = 8.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
+ Q E E+ +E E+ EE K E +EE E +E E E + E+++ +
Sbjct: 70 AREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEEL 122
>gnl|CDD|192445 pfam10018, Med4, Vitamin-D-receptor interacting Mediator subunit 4.
Members of this family function as part of the Mediator
(Med) complex, which links DNA-bound transcriptional
regulators and the general transcription machinery,
particularly the RNA polymerase II enzyme. They play a
role in basal transcription by mediating activation or
repression according to the specific complement of
transcriptional regulators bound to the promoter.
Length = 176
Score = 26.2 bits (58), Expect = 8.1
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
E I + EEEEE + E E + EEE E E ++ Q
Sbjct: 136 LSKEGIEPPGFDPEEEEERKARE--AEAKTEEEDEREAQERNQ 176
>gnl|CDD|179658 PRK03830, PRK03830, small acid-soluble spore protein Tlp;
Provisional.
Length = 73
Score = 25.0 bits (55), Expect = 8.1
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 131 ISNTQEEEEE-EEENEEEEKEEEEEKEEEKEE--EEEKEEQKEEEEQKEE 177
I N +E EE EE+ E+EK+ EEK E +EE + + E K+E ++
Sbjct: 22 IENIEEAEETIAEEDSEKEKQAIEEKNERREESIDGMRSEIKDEARDRKN 71
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 26.8 bits (59), Expect = 8.3
Identities = 13/48 (27%), Positives = 31/48 (64%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
++E + +E + +E EE+ E ++EE ++ +EE++ K+E++I+
Sbjct: 687 LEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQEKEIA 734
>gnl|CDD|225340 COG2719, SpoVR, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 26.6 bits (59), Expect = 8.4
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 137 EEEEEEENEEEEKEEEEEK-----EEEKEEEEEKEEQKEEEEQKEE 177
EEE + E EE + + +K E ++ + + EE
Sbjct: 185 EEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSEPEE 230
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 26.9 bits (60), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 140 EEEENEEEEKEEEEEKEEEKEE 161
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 26.6 bits (59), Expect = 9.0
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
E + +EE E++ E+ +E+ K K + E+ ++++ R K
Sbjct: 335 GEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKK 382
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed.
Length = 913
Score = 26.8 bits (59), Expect = 9.1
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
K +T ++ H+ +E+ EEE E EE + + + E EQ + E++EE +
Sbjct: 819 KRDTIRVLSHVQVRREDPAEEEARLRREAEELASRMQFQHAEAPGLEQPQLGEEEEEPAV 878
Query: 181 S 181
+
Sbjct: 879 A 879
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 26.2 bits (58), Expect = 9.1
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E +++ N +E + +E+EE+ E ++ EE+ E +K +++S+R
Sbjct: 83 RIERDDKGNPLDEPLDSKEEEEKPEVVKQLEEEASEPAKKP-RRLSKR 129
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 26.8 bits (60), Expect = 9.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEE--EKEEQKEEEEQKEEQQISRRVAD 186
E E+ E+E + EK+ E K EE EKE++K E Q + ++ R+A
Sbjct: 822 ELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLAV 874
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 25.4 bits (56), Expect = 9.3
Identities = 8/26 (30%), Positives = 20/26 (76%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEE 162
+E EE++ E+E ++++E E++ E++
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
>gnl|CDD|234029 TIGR02830, spore_III_AG, stage III sporulation protein AG. CC A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is found in a spore
formation operon and is designated stage III sporulation
protein AG [Cellular processes, Sporulation and
germination].
Length = 186
Score = 26.2 bits (58), Expect = 9.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
S+ EE + NE+ E E + + ++++E + E+Q E E
Sbjct: 25 SSEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENE 65
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 25.8 bits (57), Expect = 9.4
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 127 MGEHISNTQEEEEEEEENEEEEKEE-----EEEKEEEKEEEEEKEEQKEEEEQKE 176
+ + S+ E E E E + +EE ++ + KEE E+K E K+ E + +
Sbjct: 50 VKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESK 104
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 25.8 bits (57), Expect = 9.6
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ +++ + EK E++ K + + E+ Q E+
Sbjct: 32 KAKKKLKSEKLEKKAKRQLRAEKRQALEK 60
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 25.6 bits (57), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEE 167
E+ +K EEE KEE K E E+
Sbjct: 28 EKYDKREEEAKEEAKARSEPDED 50
>gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated.
Length = 228
Score = 26.4 bits (58), Expect = 9.9
Identities = 9/57 (15%), Positives = 32/57 (56%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
++ ++E+++ E ++ + E+ +E +++ ++ E ++ QKE+Q+ + +
Sbjct: 53 ELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTE 109
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 25.9 bits (57), Expect = 10.0
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
E E E+NE + E EKE K+ E++ E ++E EQ E++++ +++ D
Sbjct: 51 ELELLREDNERLSTQYEREKELRKQAEQKLLEFEDELEQ-EKKELQKKIED 100
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.126 0.342
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,453,138
Number of extensions: 919441
Number of successful extensions: 29578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15515
Number of HSP's successfully gapped: 4544
Length of query: 188
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 97
Effective length of database: 6,901,388
Effective search space: 669434636
Effective search space used: 669434636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (25.2 bits)