RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17334
(188 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 79.6 bits (195), Expect = 1e-18
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 32 LNLTNSSFVPKINGFDDGPQF---PAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
+ +N + V + + PQ+ + + +++ +G N + V ++ K +
Sbjct: 11 VPFSNKTGV--VRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL 68
Query: 89 RNSTNIFLMNLSIADLMVLLVCTPTV 114
R N L+NL++ADL ++ T
Sbjct: 69 RTPLNYILLNLAVADLFMVFGGFTTT 94
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 34.2 bits (78), Expect = 0.006
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
IS ++ + E+ +E E E E +EEE+ + EEE+ K
Sbjct: 70 ISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 33.8 bits (77), Expect = 0.008
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+E+ + E+ + ++ E E E +EE++ Q + EE++ +
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKG 115
Score = 33.8 bits (77), Expect = 0.009
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
I + QE+ + E+ + +E E + E +EEEK + EEEQ +
Sbjct: 69 IISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 31.5 bits (71), Expect = 0.047
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+E+ E+ + +E E E E +E+++ + EE+Q+
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQV 113
Score = 30.0 bits (67), Expect = 0.17
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+E+ + E+ + +E E E E +++E+ + E++ + +
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPS 118
Score = 28.1 bits (62), Expect = 0.67
Identities = 6/35 (17%), Positives = 19/35 (54%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ +E+ + E+ + ++ E E + +E+++ Q
Sbjct: 71 SGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQ 105
Score = 27.7 bits (61), Expect = 0.97
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+ +E E E E +EE++ + + EEE+ +
Sbjct: 82 AKGQEIVESLNETELLVDEEEKAQNDSEEEQVKG 115
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 34.2 bits (78), Expect = 0.007
Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 14/88 (15%)
Query: 19 WTLAIGAAENASL---LNLTNSSFVPKINGFDDGPQFPAYIRTPS---MVLCSIILCIGV 72
L +G+ LN N P + Q T + L
Sbjct: 17 LALIVGSL--FGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQA 74
Query: 73 LGNIMVPCVILKSKDMRNSTNIFLMNLS 100
+ + L + + LM LS
Sbjct: 75 IMVYLPAR-ELNMRPN-----MGLMWLS 96
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 33.5 bits (76), Expect = 0.010
Identities = 4/57 (7%), Positives = 16/57 (28%)
Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ Q E + E + + ++++ + ++ E +
Sbjct: 218 AQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAAS 274
Score = 29.6 bits (66), Expect = 0.21
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E E +E+ + + E+ + EQK + Q
Sbjct: 122 GEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQ 166
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 33.2 bits (75), Expect = 0.011
Identities = 10/61 (16%), Positives = 28/61 (45%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ QM E + +E ++ + E + KE+E+ + +EQ++ ++ +++
Sbjct: 229 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 288
Query: 183 R 183
Sbjct: 289 M 289
Score = 32.0 bits (72), Expect = 0.031
Identities = 7/50 (14%), Positives = 26/50 (52%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
+ E + + +E+E+ + +E+++ +E +++ + E Q + ++
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
Score = 32.0 bits (72), Expect = 0.033
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
Q E+ E + + KE+E + +E+E+ ++ ++E + +
Sbjct: 247 QLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 291
Score = 31.6 bits (71), Expect = 0.047
Identities = 7/57 (12%), Positives = 24/57 (42%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + + + +E + E+ E + + +++E + +E+E+ +E
Sbjct: 226 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGF 282
Score = 31.3 bits (70), Expect = 0.051
Identities = 11/52 (21%), Positives = 28/52 (53%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
N Q E++E +E K+ E+ E ++ + +++E+ + +E++Q+
Sbjct: 226 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 277
Score = 30.9 bits (69), Expect = 0.069
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
Q+ E + N + + +E+E K +E+E+ ++ ++E K E + + +
Sbjct: 247 QLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 29.3 bits (65), Expect = 0.24
Identities = 9/60 (15%), Positives = 26/60 (43%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ + E ++ E+ + + +E++ + +E+E+ +E QKE + +
Sbjct: 232 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 291
Score = 29.3 bits (65), Expect = 0.28
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + Q + E+ E +E +E ++ EK E + + KE+E +
Sbjct: 215 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 271
Score = 28.9 bits (64), Expect = 0.32
Identities = 7/58 (12%), Positives = 26/58 (44%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
++ + + + E +++ E+ E+++ +E +Q E+ + + Q+ +
Sbjct: 205 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKE 262
Score = 28.6 bits (63), Expect = 0.50
Identities = 8/57 (14%), Positives = 24/57 (42%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + + E + E+ E++E +E ++ ++ + + + +EQ+
Sbjct: 208 VERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQE 264
Score = 27.8 bits (61), Expect = 0.75
Identities = 9/61 (14%), Positives = 24/61 (39%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ E + E + E + K E + + ++ E+KE +E ++ +++
Sbjct: 195 TDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN 254
Query: 183 R 183
Sbjct: 255 D 255
Score = 27.4 bits (60), Expect = 1.1
Identities = 8/58 (13%), Positives = 24/58 (41%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E + + E+ E+++ +E ++ E+ E + + +EQ+ + +
Sbjct: 215 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 272
Score = 27.4 bits (60), Expect = 1.1
Identities = 8/67 (11%), Positives = 29/67 (43%)
Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
E+ + + + + E + + E E+KE ++ ++ E+ + ++ + +++E
Sbjct: 205 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQE 264
Query: 177 EQQISRR 183
+
Sbjct: 265 RTLALKL 271
Score = 26.6 bits (58), Expect = 1.9
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
Q + ++ ++E E E E + + E + + E+ EQKE Q+ +Q++ +
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 251
Score = 26.2 bits (57), Expect = 2.3
Identities = 9/64 (14%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEK--EEEEEKEEQKEEEEQKEEQQISRR 183
+M E++E + ++ E+ E + + +E+E K +E+++ ++ ++
Sbjct: 225 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 284
Query: 184 VADK 187
+
Sbjct: 285 ESRI 288
Score = 25.9 bits (56), Expect = 3.4
Identities = 9/55 (16%), Positives = 25/55 (45%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E +++ + ++ +E+E E E K E + + + + + ++ +Q R
Sbjct: 186 ESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 240
Score = 25.5 bits (55), Expect = 3.9
Identities = 9/61 (14%), Positives = 24/61 (39%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ + E + E + E +++ E+ E+++ +E +Q E+ +
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 255
Query: 183 R 183
R
Sbjct: 256 R 256
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 31.8 bits (72), Expect = 0.020
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
++ E E E ++ +E + KE+ +K E +E + + R+ +KD
Sbjct: 71 EKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKD 124
Score = 31.8 bits (72), Expect = 0.023
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
E QE E + E+ E E E ++ +E + KE+ QK E R A
Sbjct: 55 EERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREA 111
Score = 31.0 bits (70), Expect = 0.035
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E+ ++ E ++ E E +EK++ EE + +E +
Sbjct: 92 KMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
Score = 31.0 bits (70), Expect = 0.035
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
Q++ E EE + ++ E + EK E E + QK EE ++++
Sbjct: 48 QKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKE 96
Score = 30.2 bits (68), Expect = 0.063
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
Q+ EE + KE+ +K E +E E E +E+ +
Sbjct: 81 QKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDK 125
Score = 29.9 bits (67), Expect = 0.085
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+E +++ E EE K +E E + E+ E E + ++ +E +
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKM 93
Score = 29.9 bits (67), Expect = 0.089
Identities = 7/48 (14%), Positives = 20/48 (41%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
+ + + +K E ++ E E +E+++ EE + ++
Sbjct: 87 NNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 134
Score = 29.5 bits (66), Expect = 0.11
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E I E EE + +E E + ++ E E E ++ +E + +
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLA 99
Score = 28.7 bits (64), Expect = 0.20
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
++ + ++ E E E E +E+++ EE ++ +E KE
Sbjct: 91 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 28.7 bits (64), Expect = 0.21
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
+ ++ EEN K +E+ ++ E +E E + Q+ + +
Sbjct: 78 EVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE 129
Score = 27.9 bits (62), Expect = 0.42
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ EE +++ EE+ + +E E K E++E ++E ++ E+
Sbjct: 40 RDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEEN 87
Score = 25.6 bits (56), Expect = 2.3
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E ++ + E +++ E EE+ + +E E K ++ E ++E Q
Sbjct: 31 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 81
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 30.2 bits (68), Expect = 0.046
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ E + K + EE+ + E E EE+ +E+E Q
Sbjct: 59 PKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
Score = 29.4 bits (66), Expect = 0.093
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 112 PTVLVEVNSKPETW---QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
P L E+ + + +G + E + + + EE+ + +E E EEE +++E
Sbjct: 36 PPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKEN 95
Query: 169 KEEE 172
+
Sbjct: 96 LLSQ 99
Score = 29.4 bits (66), Expect = 0.10
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+N E + + + EE+ + +E E EEE Q++E +S
Sbjct: 59 PKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLS 98
Score = 26.3 bits (58), Expect = 1.1
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE--------EEEQKEEQQ 179
++E K + + + ++EEQ++ EEE +E++
Sbjct: 43 LDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKEN 95
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 30.0 bits (67), Expect = 0.13
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ E+ + E EEK E+ + EE+ E + EE K +Q+
Sbjct: 213 DPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQE 255
Score = 26.9 bits (59), Expect = 1.4
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ +EE EE EK + EE+ E E+ + +++ +
Sbjct: 213 DPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPD 258
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 29.7 bits (67), Expect = 0.18
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 152 EEEKEEEKE-EEEEKEEQKEEEEQKEEQ 178
+ + E K+ +EEK + KEE E+ ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 29.3 bits (66), Expect = 0.23
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEK 165
+ + E ++ KEE+ + +EE E+ ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 29.3 bits (66), Expect = 0.23
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ + E K+ KEE+ + +E+ E+ ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 29.3 bits (66), Expect = 0.23
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+ + E ++ +EEK + KEE E+ ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 28.5 bits (64), Expect = 0.42
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 146 EEEKEEEEE--KEEEKEEEEEKEEQKEE 171
+ + E ++ KEE+ + +EE E+ +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 25.8 bits (57), Expect = 2.6
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEE 161
+ E ++ ++EE+ + +EE E+ +E
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 25.8 bits (57), Expect = 3.1
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 154 EKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ + E ++ KEE+ + +E+ E+
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLL 135
Score = 25.4 bits (56), Expect = 3.9
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEE 162
+ + E ++ +EEK + +E+ E+ +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 29.3 bits (66), Expect = 0.19
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 152 EEEKEEEKE-EEEEKEEQKEEEEQKEEQ 178
+ +KE++K+ +EK++ + E E+ EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 29.3 bits (66), Expect = 0.21
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+ + E++++ +EK++ + E E+ EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.9 bits (65), Expect = 0.26
Identities = 5/28 (17%), Positives = 19/28 (67%)
Query: 148 EKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
+ ++E++K+ +E+++ ++E+ E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.9 bits (65), Expect = 0.26
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEK 165
+ ++E+ ++ +E+++ E+E+ EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.5 bits (64), Expect = 0.33
Identities = 7/28 (25%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 146 EEEKEEEEE--KEEEKEEEEEKEEQKEE 171
+ +KE++++ +E+K+ E+E+ +E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 26.2 bits (58), Expect = 2.1
Identities = 4/26 (15%), Positives = 18/26 (69%)
Query: 154 EKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ ++E++++ +E+K+ ++E+ +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
Score = 25.8 bits (57), Expect = 2.7
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEE 162
Q ++E++++ +EK++ + E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 29.0 bits (64), Expect = 0.43
Identities = 19/115 (16%), Positives = 47/115 (40%)
Query: 74 GNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISN 133
GN V IL +DM + + +++ + L V ++E + + +G+ +
Sbjct: 844 GNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYIS 903
Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ +E E +E + E +++ E +++E E + +++ K
Sbjct: 904 PIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKT 958
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 27.8 bits (61), Expect = 0.50
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE +EEKE E+ E E+++ + + + VA
Sbjct: 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDG 47
Score = 24.3 bits (52), Expect = 6.0
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
EE +EE E + ++ E E+E + E + V
Sbjct: 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGV 48
Score = 23.9 bits (51), Expect = 8.1
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+EE+E E+ E E+E+ + + +
Sbjct: 5 DEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGD 46
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 27.5 bits (61), Expect = 0.51
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
+ E+ + ++ ++ EE+E ++ + EEE +E E E Q
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQA 47
Score = 26.3 bits (58), Expect = 1.6
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ ++ ++ E+E ++ E EEE +E E E + ++
Sbjct: 9 DGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQK 50
Score = 24.0 bits (52), Expect = 7.7
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ---KEEEEQKEEQQISRRVADK 187
E+ + ++ ++ E++E + E EEE ++ + E Q +++I+ K
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTK 59
Score = 24.0 bits (52), Expect = 9.9
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
+ + EE+E ++ E EEE ++ E E+ + ++
Sbjct: 11 DDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQK 50
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 27.5 bits (61), Expect = 0.51
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
EE E + + EE E ++ EE++ +EE + +++++
Sbjct: 95 EEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQ 134
Score = 27.2 bits (60), Expect = 0.70
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 147 EEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
EE E E + + EE E ++ EE++++EE Q ++
Sbjct: 95 EEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQ 131
Score = 26.8 bits (59), Expect = 1.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE E E + E+ E +++ EEK+ Q+E + ++++Q
Sbjct: 95 EEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQ 134
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 27.2 bits (60), Expect = 0.52
Identities = 6/47 (12%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 138 EEEEEENEEEEKEEEEEKEE-EKEEEEEKEEQKEEEEQKEEQQISRR 183
+ + E +K EE++ + + + + ++ ++ IS +
Sbjct: 47 RISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNK 93
Score = 24.8 bits (54), Expect = 3.1
Identities = 4/54 (7%), Positives = 21/54 (38%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
++G + ++E + EE++ + + + + + + ++ +
Sbjct: 40 EIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNK 93
Score = 23.7 bits (51), Expect = 8.9
Identities = 3/47 (6%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 142 EENEEEEKEEEEEKEEEKEE-EEEKEEQKEEEEQKEEQQISRRVADK 187
++ +++ ++ EE++ + + + + ++ +++K
Sbjct: 47 RISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNK 93
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 27.6 bits (61), Expect = 0.59
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E + + + E EEE +++E + +Q+ E Q+E Q
Sbjct: 85 ECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQ 135
Score = 26.0 bits (57), Expect = 2.0
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+E + + K + EEE +Q+E + +QQ
Sbjct: 84 QECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQ 125
Score = 24.5 bits (53), Expect = 6.0
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E E ++ + + K + EEE +QQ
Sbjct: 77 SEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQ 115
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 28.0 bits (61), Expect = 0.64
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
Q EE NE++ E E KE+ + E+
Sbjct: 3 QRTEELLRCNEQQAAELETCKEQLFQSNMER 33
Score = 26.8 bits (58), Expect = 1.9
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
+ +E + E++ E + +EQ + + R+
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERK 34
Score = 25.6 bits (55), Expect = 4.6
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
+ EE E++ E E +E+ + E ++
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
Score = 25.3 bits (54), Expect = 6.0
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEK 165
++ EE E++ E E +E+ + +
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNME 32
Score = 24.9 bits (53), Expect = 6.9
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
+ EE E++ E E +++ + E
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNME 32
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 27.2 bits (60), Expect = 0.65
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
++E + K+ +++K++ + E E EEEQ+
Sbjct: 57 QKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQR 92
Score = 24.9 bits (54), Expect = 3.3
Identities = 8/53 (15%), Positives = 25/53 (47%)
Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ ++E++ + ++K+++ E E + E EE+++ +E+
Sbjct: 47 LCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKM 99
Score = 24.9 bits (54), Expect = 3.9
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
++ +++ ++ E E E EEE+++ +E+
Sbjct: 64 HKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNI 102
Score = 24.1 bits (52), Expect = 7.0
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
++EK+ +K ++K+++ E E + E EE+Q +K
Sbjct: 57 QKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEK 98
Score = 23.8 bits (51), Expect = 10.0
Identities = 7/43 (16%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 142 EENEEEEKEEEEEKEEEKEE-EEEKEEQKEEEEQKEEQQISRR 183
+++E+ ++ +++K++ E E E ++E+Q++
Sbjct: 54 LLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGE 96
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 27.4 bits (60), Expect = 1.0
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
E EE + + +E+ K+ E + K Q + KE ++
Sbjct: 6 ETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEK 49
Score = 26.2 bits (57), Expect = 2.6
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
+ + +E+ +++ E + K + + KE +KEE
Sbjct: 15 KSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEE 51
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 27.6 bits (60), Expect = 1.1
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ EE+ E +E ++ E+E+E++ + +
Sbjct: 55 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99
Score = 26.4 bits (57), Expect = 2.6
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
+ EE+ E +E+ +++ E+EE ++
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDD 92
Score = 26.0 bits (56), Expect = 3.5
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+ N EE+ + +E+ ++ ++E+E+ +
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDD 92
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 27.5 bits (60), Expect = 1.2
Identities = 9/119 (7%), Positives = 31/119 (26%), Gaps = 8/119 (6%)
Query: 73 LGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPT--------VLVEVNSKPET 124
L + S+ + + + ++L +L V
Sbjct: 331 LSKYPGSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERN 390
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
W+ + + + +E+ +E+ + K ++ + + +
Sbjct: 391 WKTFPEDGKSFLCDNYISIDTIKEEPLSKEETNFDNLDYLKIDKTLSKRTISTVNVQLK 449
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 26.7 bits (59), Expect = 1.2
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+EEE E E + +EE +K+ + + +D
Sbjct: 54 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPED 91
Score = 25.6 bits (56), Expect = 3.0
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
+EE E E + +EE K+ +E + E Q
Sbjct: 54 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQ 92
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 142
Score = 26.4 bits (58), Expect = 1.5
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 120 SKPETWQMGEHISN-TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
KPE W I + + ++ E+ + +EE + + ++E E + + +K E
Sbjct: 14 QKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPE 72
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 27.1 bits (59), Expect = 1.6
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 136 EEEEEEEENEEEEKEEEEE-----------KEEEKEEEEEKEEQKEEEEQK 175
+E ++ +++EKE E E + K E +E + + +
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
Score = 25.9 bits (56), Expect = 3.7
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 134 TQEEEEE-EEENEEEEKEEEE-----EKEEEKEEEEEKEEQKEEEEQKEEQ 178
T+E ++ ++ +E+E E E K+ + + E +E Q++ +
Sbjct: 707 TKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAE 757
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 27.0 bits (59), Expect = 1.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
EE E +E +E E EE E E E E+ ++E +Q ++
Sbjct: 33 EEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQEL 76
Score = 25.5 bits (55), Expect = 4.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
E I N +E +E E +EE E E E E+ E++ +Q +E
Sbjct: 33 EEIENITNRIKETQEFIELLREEGEN-ELEIEKYEKELDQLYQELL 77
Score = 25.5 bits (55), Expect = 4.9
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 137 EEEEEEENEEEEKEEEEE--KEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
EE E N +E +E E +EE + E E ++ +KE ++ +E D
Sbjct: 33 EEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQELLFLLSPEASD 86
Score = 24.3 bits (52), Expect = 9.7
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ 174
I + +E +E + EE E E E E+ ++E + ++
Sbjct: 32 IEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQE 75
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 26.9 bits (59), Expect = 1.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQK 169
E +++ E EEK + +EK E++
Sbjct: 306 ENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 25.7 bits (56), Expect = 4.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEEQKE 176
+E +K E EE+ + + +E+ +KE
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 24.9 bits (54), Expect = 7.0
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 149 KEEEEEKEEEKEEEEEKEEQKEEEEQK 175
KE ++ +E E++ K +++ E+++
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 24.5 bits (53), Expect = 8.8
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKE 170
+E +K E E++ + + +++ +KE
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 24.5 bits (53), Expect = 9.8
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQ 168
+EN++ + EE+ + + +E+ ++E+
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 26.9 bits (58), Expect = 1.8
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
I N + +E +K KE+ + +++E ++ ++E
Sbjct: 321 SIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 26.5 bits (57), Expect = 2.5
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 143 ENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
+ +E ++ KE+ K + +E EE ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 26.1 bits (56), Expect = 3.4
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
KE K+ +E+ + ++EE +E Q
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQD 363
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 26.5 bits (58), Expect = 2.3
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEE 167
+ + + + + EE ++E KEEE +
Sbjct: 324 KLGDFNLIAKTKTELEETQRELRKEEEAKGIS 355
Score = 26.2 bits (57), Expect = 3.0
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
+ + + + + EE + E KEE+ +
Sbjct: 324 KLGDFNLIAKTKTELEETQRELRKEEEAKGIS 355
Score = 25.8 bits (56), Expect = 3.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 148 EKEEEEEKEEEKEEEEEK--EEQKEEEEQKEE 177
+ + + K E EE E +KEEE +
Sbjct: 324 KLGDFNLIAKTKTELEETQRELRKEEEAKGIS 355
Score = 24.6 bits (53), Expect = 9.8
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEE------EKEEEEEKEEQKEEEEQKEEQ 178
++G+ + + E EE E KEEE + + + E+ +K++
Sbjct: 323 IKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDYSVTPEEGALVPEKDDT 382
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 24.9 bits (54), Expect = 2.7
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E++ + ++ + EK+E + E + Q
Sbjct: 54 EKKKMKYIQDFQREKQEFERNLARFREDHPDLIQN 88
Score = 23.4 bits (50), Expect = 9.9
Identities = 6/38 (15%), Positives = 21/38 (55%)
Query: 146 EEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
E++K + + + +++E E+ + E+ + Q +++
Sbjct: 54 EKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 91
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 26.2 bits (57), Expect = 2.7
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEE 167
+++E E+ +K EE+E + E+E+
Sbjct: 228 KQKEVEQLIKKHEEEEAKAEREK 250
Score = 25.4 bits (55), Expect = 5.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 149 KEEEEEKEEEKEEEEEKEEQKEE 171
K++E E+ +K EEEE + ++E+
Sbjct: 228 KQKEVEQLIKKHEEEEAKAEREK 250
Score = 24.6 bits (53), Expect = 7.9
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 139 EEEEENEEEEKEEEEEKEEEKEE 161
+++E + +K EEEE + E+E+
Sbjct: 228 KQKEVEQLIKKHEEEEAKAEREK 250
Score = 24.6 bits (53), Expect = 8.4
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 151 EEEEKEEEKEEEEEKEEQKEEEE 173
+++E E+ ++ EE+E + E E+
Sbjct: 228 KQKEVEQLIKKHEEEEAKAEREK 250
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 24.8 bits (54), Expect = 3.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 144 NEEEEKEEEEEKEEEKEEEEEKEE 167
NEE ++E E + EE+ +
Sbjct: 8 NEELRAQQEAEAAQRLSEEKAQAS 31
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 25.8 bits (56), Expect = 3.9
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEE-----EKEEEKEEEEEKEEQKEEEEQKEE 177
W+ I E + + E E E + E E + + E E E+
Sbjct: 303 AEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK 362
Query: 178 QQISRRV 184
+ +R V
Sbjct: 363 LRGARFV 369
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 25.1 bits (55), Expect = 4.0
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
+ EE + +++ E ++E+ E ++KE+ + + I
Sbjct: 81 GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 126
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 197
Score = 24.9 bits (54), Expect = 5.8
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVA 185
+S E + N+ +E ++E E E+E Q + Q+ Q+ V+
Sbjct: 9 VSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVS 63
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 172
Score = 24.6 bits (53), Expect = 7.1
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
+ KEE E K + E E +E + + ++ADK
Sbjct: 83 KYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADK 125
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 24.7 bits (54), Expect = 7.4
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
E + + E+ E EE+E ++ + E E EE QK
Sbjct: 114 ERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPEELQK 160
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 24.5 bits (52), Expect = 9.0
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 8/37 (21%)
Query: 127 MGEHISNTQEEE--------EEEEENEEEEKEEEEEK 155
G + + +E E E++ E+ E
Sbjct: 286 NGSFVLDEEENGRVISVWKVEAEDKTEKLAAALEHHH 322
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2,
mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 24.7 bits (53), Expect = 9.6
Identities = 8/54 (14%), Positives = 20/54 (37%)
Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
+ + + + +E+KE ++ +EE EQ +++ D
Sbjct: 276 MQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIKIKKIEDAS 329
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.307 0.126 0.342
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 648,180
Number of extensions: 30886
Number of successful extensions: 918
Number of sequences better than 10.0: 1
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 252
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.4 bits)