BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17336
(28 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q62315|JARD2_MOUSE Protein Jumonji OS=Mus musculus GN=Jarid2 PE=1 SV=1
Length = 1234
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28
M+FS CW RD + LP+I+YLH+GA I
Sbjct: 919 MVFSTSCWSRDQNHLPYIDYLHTGADCI 946
>sp|Q92833|JARD2_HUMAN Protein Jumonji OS=Homo sapiens GN=JARID2 PE=1 SV=2
Length = 1246
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28
M+FS CW RD + LP+I+YLH+GA I
Sbjct: 921 MVFSTSCWSRDQNHLPYIDYLHTGADCI 948
>sp|Q5F363|JARD2_CHICK Protein Jumonji OS=Gallus gallus GN=JARID2 PE=2 SV=1
Length = 1233
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28
M+FS CW RD + LP+I+YLH+GA I
Sbjct: 910 MVFSTSCWSRDQNHLPYIDYLHTGADCI 937
>sp|Q1LVC2|JARD2_DANRE Protein Jumonji OS=Danio rerio GN=jarid2b PE=3 SV=2
Length = 1319
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28
M+FS CW +D + LP+I+YLH+GA I
Sbjct: 991 MVFSTSCWSQDQNRLPYIDYLHTGADCI 1018
>sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana
GN=JMJ14 PE=1 SV=1
Length = 954
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28
M FS CW+ + H L + YLH+G K+
Sbjct: 301 MCFSTFCWHVEDHHLYSMNYLHTGDPKV 328
>sp|Q9STM3|REF6_ARATH Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6
PE=1 SV=1
Length = 1360
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASK 27
M+FS W+ + H L + YLH GA K
Sbjct: 238 MMFSWFAWHVEDHDLHSLNYLHMGAGK 264
>sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4
Length = 1554
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASK 27
M+FSA CW+ + H I YLH G K
Sbjct: 506 MVFSAFCWHIEDHWSYSINYLHWGEPK 532
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2
SV=1
Length = 1545
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASK 27
M+FSA CW+ + H I YLH G K
Sbjct: 499 MVFSAFCWHIEDHWSYSINYLHWGEPK 525
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2
Length = 1548
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASK 27
M+FSA CW+ + H I YLH G K
Sbjct: 505 MVFSAFCWHIEDHWSYSINYLHWGEPK 531
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2
Length = 1560
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASK 27
M+FSA CW+ + H I YLH G K
Sbjct: 506 MVFSAFCWHIEDHWSYSINYLHWGEPK 532
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2
SV=1
Length = 1556
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1 MLFSACCWYRDPHGLPWIEYLHSGASK 27
M+FSA CW+ + H I YLH G K
Sbjct: 506 MVFSAFCWHIEDHWSYSINYLHWGEPK 532
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.143 0.566
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,687,637
Number of Sequences: 539616
Number of extensions: 173708
Number of successful extensions: 709
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 15
length of query: 28
length of database: 191,569,459
effective HSP length: 3
effective length of query: 25
effective length of database: 189,950,611
effective search space: 4748765275
effective search space used: 4748765275
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)