Query psy17336
Match_columns 28
No_of_seqs 18 out of 20
Neff 2.5
Searched_HMMs 46136
Date Fri Aug 16 19:40:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02373 JmjC: JmjC domain, hy 98.8 2.2E-09 4.7E-14 54.4 0.7 28 1-28 6-33 (114)
2 KOG1246|consensus 98.5 1.4E-08 3E-13 68.9 -0.1 28 1-28 337-364 (904)
3 smart00558 JmjC A domain famil 98.4 3.2E-07 7E-12 43.8 2.1 24 1-26 34-57 (57)
4 KOG0958|consensus 97.6 2.5E-05 5.5E-10 55.0 1.6 24 4-27 184-207 (690)
5 PF11092 Alveol-reg_P311: Neur 64.3 4.2 9.1E-05 22.2 1.1 13 11-23 55-67 (68)
6 PF00086 Thyroglobulin_1: Thyr 54.8 7 0.00015 19.3 0.9 14 4-17 43-56 (68)
7 cd00191 TY Thyroglobulin type 53.5 10 0.00022 19.2 1.3 12 5-16 42-53 (66)
8 PF13308 YARHG: YARHG domain 40.7 6.2 0.00013 20.4 -0.6 12 2-13 49-60 (81)
9 COG0649 NuoD NADH:ubiquinone o 37.7 7.1 0.00015 26.7 -0.9 14 15-28 45-58 (398)
10 KOG4578|consensus 36.6 21 0.00046 24.8 1.3 13 5-17 117-129 (421)
11 PF05890 Ebp2: Eukaryotic rRNA 34.8 25 0.00055 22.1 1.3 12 12-23 47-58 (271)
12 COG4911 Uncharacterized conser 32.3 43 0.00094 20.0 1.9 22 3-24 85-106 (123)
13 PF07953 Toxin_R_bind_N: Clost 31.4 31 0.00067 21.8 1.3 13 3-15 57-69 (195)
14 PF08720 Hema_stalk: Influenza 28.4 19 0.00042 22.3 0.0 11 3-13 133-143 (175)
15 PHA03170 UL37 tegument protein 28.2 73 0.0016 21.3 2.7 22 4-27 124-146 (293)
16 smart00211 TY Thyroglobulin ty 27.4 55 0.0012 15.7 1.5 11 6-16 21-31 (46)
17 KOG1621|consensus 27.2 35 0.00076 24.0 1.1 15 5-19 407-434 (458)
18 PHA03141 helicase-primase prim 26.9 10 0.00022 21.8 -1.3 18 5-22 47-67 (101)
19 COG1426 Predicted transcriptio 26.0 30 0.00064 21.6 0.5 11 1-11 243-253 (284)
20 PF02736 Myosin_N: Myosin N-te 24.9 48 0.001 15.2 1.0 9 6-14 3-11 (42)
21 KOG1089|consensus 24.8 50 0.0011 23.6 1.5 19 5-23 190-208 (573)
22 PRK11354 kil FtsZ inhibitor pr 24.2 27 0.00059 19.2 0.1 9 20-28 42-50 (73)
23 cd07261 Glo_EDI_BRP_like_11 Th 24.1 61 0.0013 15.5 1.4 14 4-17 97-110 (114)
24 PF07383 DUF1496: Protein of u 23.9 55 0.0012 16.7 1.2 10 5-14 13-22 (56)
No 1
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=98.76 E-value=2.2e-09 Score=54.40 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=23.8
Q ss_pred CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28 (28)
Q Consensus 1 MvFst~cw~rd~h~lp~ieYlhtga~ki 28 (28)
|.||..+||+|++++++++|+|.|++|+
T Consensus 6 ~~~s~t~~H~e~~~~~sv~~~~~g~~k~ 33 (114)
T PF02373_consen 6 MKGSYTPWHIEDNGLSSVNYHHFGGSKV 33 (114)
T ss_dssp -TTEEEEEEE-GGG-EEEEEEEEESEEE
T ss_pred CCCcCCCcEecCCCCceeeeeccCcceE
Confidence 6799999999999999999999999985
No 2
>KOG1246|consensus
Probab=98.54 E-value=1.4e-08 Score=68.88 Aligned_cols=28 Identities=43% Similarity=0.813 Sum_probs=27.0
Q ss_pred CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28 (28)
Q Consensus 1 MvFst~cw~rd~h~lp~ieYlhtga~ki 28 (28)
|+||++|||+++|.+++++|+|.|++|+
T Consensus 337 m~fs~~~wh~ed~~~~slny~h~g~pk~ 364 (904)
T KOG1246|consen 337 MCFSTFCWHVEDHSLYSLNYLHLGEPKT 364 (904)
T ss_pred ccccccccccCCccccccchhhcCCceE
Confidence 8999999999999999999999999985
No 3
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=98.35 E-value=3.2e-07 Score=43.83 Aligned_cols=24 Identities=42% Similarity=0.605 Sum_probs=21.8
Q ss_pred CeeeeeEEEecCCCCCeEEeeeecCC
Q psy17336 1 MLFSACCWYRDPHGLPWIEYLHSGAS 26 (28)
Q Consensus 1 MvFst~cw~rd~h~lp~ieYlhtga~ 26 (28)
|.+|++|||.|++.+ ++|+|.|+.
T Consensus 34 ~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 34 MAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred CCCCccceeEcCCCe--EEEEEecCC
Confidence 568999999999999 999999974
No 4
>KOG0958|consensus
Probab=97.62 E-value=2.5e-05 Score=55.02 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=23.2
Q ss_pred eeeEEEecCCCCCeEEeeeecCCC
Q psy17336 4 SACCWYRDPHGLPWIEYLHSGASK 27 (28)
Q Consensus 4 st~cw~rd~h~lp~ieYlhtga~k 27 (28)
+||=||.|+-.|++|+|||-||+|
T Consensus 184 ttFaWHtEdmDLySINyLHFGaPK 207 (690)
T KOG0958|consen 184 TTFAWHTEDMDLYSINYLHFGAPK 207 (690)
T ss_pred cccccccCCccceeeeeeecCCCc
Confidence 689999999999999999999998
No 5
>PF11092 Alveol-reg_P311: Neuronal protein 3.1 (p311); InterPro: IPR024417 Neuronal protein 3.1, also known as P311, is found in neurone and muscle cells []. It contains a conserved PEST (Pro, Glu, Ser, and Thr) motif, which is involved in protein-protein interactions, as well as in targeting proteins for degradation by the ubiquitin/proteasome system. In addition to a potential role in neural function, P311 may be involved in regulating glioma motility [] and could have some function in myo-fibroblast transformation and prevention of fibrosis []. It has also been identified as a potential regulator of alveolar generation [].
Probab=64.32 E-value=4.2 Score=22.23 Aligned_cols=13 Identities=54% Similarity=0.754 Sum_probs=10.6
Q ss_pred cCCCCCeEEeeee
Q psy17336 11 DPHGLPWIEYLHS 23 (28)
Q Consensus 11 d~h~lp~ieYlht 23 (28)
+.+..|-|+|||+
T Consensus 55 ~~~~sp~isYlhs 67 (68)
T PF11092_consen 55 DELRSPRISYLHS 67 (68)
T ss_pred CCccCCcceeeec
Confidence 4567899999996
No 6
>PF00086 Thyroglobulin_1: Thyroglobulin type-1 repeat; InterPro: IPR000716 Thyroglobulin (Tg) is a large glycoprotein specific to the thyroid gland and is the precursor of the iodinated thyroid hormones thyroxine (T4) and triiodothyronine (T3). The N-terminal section of Tg contains 10 repeats of a domain of about 65 amino acids which is known as the Tg type-1 repeat [, ]. Such a domain has also been found as a single or repeated sequence in the HLA class II associated invariant chain []; human pancreatic carcinoma marker proteins GA733-1 and GA733-2 []; nidogen (entactin), a sulphated glycoprotein which is widely distributed in basement membranes and that is tightly associated with laminin; insulin-like growth factor binding proteins (IGFBP) []; saxiphilin, a transferrin-like protein from Rana catesbeiana (Bull frog) that binds specifically to the neurotoxin saxitoxin []; chum salmon egg cysteine proteinase inhibitor, and equistatin, a thiol-protease inhibitor from Actinia equina (sea anemone) []. The existence of Thyr-1 domains in such a wide variety of proteins raises questions about their activity and function, and their interactions with neighbouring domains. The Thyr-1 and related domains belong to MEROPS proteinase inhibitor family I31, clan IX. Equistatin from A. equina is composed of three Thyr-1 domains; as with other proteins that contains Thyr-1 domains, the thyropins, they bind reversibly and tightly to cysteine proteases (inhibitor family C1). In equistatin inhibition of papain is a function of domain-1. Unusually domain-2 inhibits cathepsin D, an aspartic protease (inhibitor family A1) and has no activity against papain. Domain-3, does not inhibit either papain or cathepsin D, and its function or its target peptidase has yet to be determined [, ].; PDB: 2H7T_A 2DSR_G 1RMJ_A 1ICF_I 1L3H_A 1ZT3_A 2DSQ_H 1ZT5_A.
Probab=54.83 E-value=7 Score=19.31 Aligned_cols=14 Identities=43% Similarity=0.952 Sum_probs=10.1
Q ss_pred eeeEEEecCCCCCe
Q psy17336 4 SACCWYRDPHGLPW 17 (28)
Q Consensus 4 st~cw~rd~h~lp~ 17 (28)
+..||.+|+.+-+-
T Consensus 43 ~~~CwCVd~~G~~i 56 (68)
T PF00086_consen 43 SGFCWCVDPEGKEI 56 (68)
T ss_dssp TTEEEEBSTTS-B-
T ss_pred CCCEEEECCCCCCc
Confidence 46899999997653
No 7
>cd00191 TY Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
Probab=53.49 E-value=10 Score=19.16 Aligned_cols=12 Identities=42% Similarity=1.088 Sum_probs=10.0
Q ss_pred eeEEEecCCCCC
Q psy17336 5 ACCWYRDPHGLP 16 (28)
Q Consensus 5 t~cw~rd~h~lp 16 (28)
..||.+|+++-+
T Consensus 42 g~CwCVd~~G~~ 53 (66)
T cd00191 42 GYCWCVDPDGEE 53 (66)
T ss_pred CcEEEECCCCcC
Confidence 379999998866
No 8
>PF13308 YARHG: YARHG domain
Probab=40.65 E-value=6.2 Score=20.41 Aligned_cols=12 Identities=33% Similarity=0.802 Sum_probs=9.9
Q ss_pred eeeeeEEEecCC
Q psy17336 2 LFSACCWYRDPH 13 (28)
Q Consensus 2 vFst~cw~rd~h 13 (28)
.|+..||+....
T Consensus 49 yF~~~~WY~~~~ 60 (81)
T PF13308_consen 49 YFSSKSWYKPEY 60 (81)
T ss_pred HHcCCCccCCCc
Confidence 388999998776
No 9
>COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]
Probab=37.74 E-value=7.1 Score=26.69 Aligned_cols=14 Identities=50% Similarity=0.745 Sum_probs=11.9
Q ss_pred CCeEEeeeecCCCC
Q psy17336 15 LPWIEYLHSGASKI 28 (28)
Q Consensus 15 lp~ieYlhtga~ki 28 (28)
-|-|-|||.|.+|+
T Consensus 45 ~p~iGylHRg~EKl 58 (398)
T COG0649 45 DPDIGYLHRGMEKL 58 (398)
T ss_pred cCCcccccccHHHH
Confidence 47789999999985
No 10
>KOG4578|consensus
Probab=36.59 E-value=21 Score=24.83 Aligned_cols=13 Identities=38% Similarity=1.045 Sum_probs=11.2
Q ss_pred eeEEEecCCCCCe
Q psy17336 5 ACCWYRDPHGLPW 17 (28)
Q Consensus 5 t~cw~rd~h~lp~ 17 (28)
++||..+|.+-|-
T Consensus 117 tGCWCvtp~GrPI 129 (421)
T KOG4578|consen 117 TGCWCVTPQGRPI 129 (421)
T ss_pred cceEEeCCCCccc
Confidence 6899999999874
No 11
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=34.84 E-value=25 Score=22.13 Aligned_cols=12 Identities=58% Similarity=1.165 Sum_probs=10.0
Q ss_pred CCCCCeEEeeee
Q psy17336 12 PHGLPWIEYLHS 23 (28)
Q Consensus 12 ~h~lp~ieYlht 23 (28)
+.++||||.|--
T Consensus 47 ~~~~pWiE~L~v 58 (271)
T PF05890_consen 47 PKKLPWIETLDV 58 (271)
T ss_pred cCCCCCeeEEee
Confidence 678999999854
No 12
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=32.33 E-value=43 Score=19.99 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=16.4
Q ss_pred eeeeEEEecCCCCCeEEeeeec
Q psy17336 3 FSACCWYRDPHGLPWIEYLHSG 24 (28)
Q Consensus 3 Fst~cw~rd~h~lp~ieYlhtg 24 (28)
|.-.||-.|.+..-|--|++-|
T Consensus 85 ~~~lCWK~DE~~imywH~~~EG 106 (123)
T COG4911 85 PAFLCWKIDENDIMYWHYMDEG 106 (123)
T ss_pred eEEEEEecCCcceeeeeccccc
Confidence 5668999998877766666554
No 13
>PF07953 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal receptor binding; InterPro: IPR012928 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domain and two receptor binding domains []. This domain is the N-terminal receptor binding domain, which is comprised of two seven-stranded beta-sheets sandwiched together to form a jelly role motif []. The role of this domain in receptor binding appears to be indirect. ; GO: 0004222 metalloendopeptidase activity, 0050827 toxin receptor binding, 0009405 pathogenesis, 0051609 inhibition of neurotransmitter uptake, 0005576 extracellular region; PDB: 3RSJ_B 3FUQ_A 3FFZ_B 1G9B_A 1S0F_A 1Z0H_B 1F31_A 1G9D_A 1S0C_A 1S0D_A ....
Probab=31.41 E-value=31 Score=21.79 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=10.9
Q ss_pred eeeeEEEecCCCC
Q psy17336 3 FSACCWYRDPHGL 15 (28)
Q Consensus 3 Fst~cw~rd~h~l 15 (28)
||.+.|.|.|...
T Consensus 57 FSIsFWlRipk~~ 69 (195)
T PF07953_consen 57 FSISFWLRIPKYD 69 (195)
T ss_dssp EEEEEEEEEECHH
T ss_pred eEEEEEEEccCcc
Confidence 9999999988643
No 14
>PF08720 Hema_stalk: Influenza C hemagglutinin stalk; InterPro: IPR014831 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the stalk segment of haemagglutinin in influenza C virus. It forms a coiled coil structure []. More information about haemagglutinin proteins can be found at Protein of the Month: Bird Flu, Haemagglutinin [].; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 1FLC_B.
Probab=28.41 E-value=19 Score=22.29 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=5.7
Q ss_pred eeeeEEEecCC
Q psy17336 3 FSACCWYRDPH 13 (28)
Q Consensus 3 Fst~cw~rd~h 13 (28)
.|.+||..|++
T Consensus 133 vspgcwiidnn 143 (175)
T PF08720_consen 133 VSPGCWIIDNN 143 (175)
T ss_dssp -STTEE---TT
T ss_pred eCCCeEEecCc
Confidence 36799998875
No 15
>PHA03170 UL37 tegument protein; Provisional
Probab=28.20 E-value=73 Score=21.35 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=14.9
Q ss_pred eeeEEEecCCCC-CeEEeeeecCCC
Q psy17336 4 SACCWYRDPHGL-PWIEYLHSGASK 27 (28)
Q Consensus 4 st~cw~rd~h~l-p~ieYlhtga~k 27 (28)
+..|| +|+|++ .+|+. .||..+
T Consensus 124 ~~~Cw-~dg~~~gGsi~l-~~~~~~ 146 (293)
T PHA03170 124 TVNCW-LEGHSAGGVMTL-FYGTER 146 (293)
T ss_pred ceEEe-ecCCCCCceEEE-EecCce
Confidence 35799 888875 46665 676654
No 16
>smart00211 TY Thyroglobulin type I repeats. The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases and binding partners of heparin.
Probab=27.39 E-value=55 Score=15.68 Aligned_cols=11 Identities=36% Similarity=0.891 Sum_probs=8.9
Q ss_pred eEEEecCCCCC
Q psy17336 6 CCWYRDPHGLP 16 (28)
Q Consensus 6 ~cw~rd~h~lp 16 (28)
.||.+|..+-+
T Consensus 21 ~CwCVd~~G~~ 31 (46)
T smart00211 21 QCWCVDATGRE 31 (46)
T ss_pred cEEEECCCCCC
Confidence 49999987765
No 17
>KOG1621|consensus
Probab=27.20 E-value=35 Score=24.05 Aligned_cols=15 Identities=53% Similarity=1.086 Sum_probs=12.6
Q ss_pred eeEEEec-------------CCCCCeEE
Q psy17336 5 ACCWYRD-------------PHGLPWIE 19 (28)
Q Consensus 5 t~cw~rd-------------~h~lp~ie 19 (28)
++||-.| +|..|||+
T Consensus 407 agvWMIDFgKtsplP~gqtL~Hr~pW~e 434 (458)
T KOG1621|consen 407 AGVWMIDFGKTSPLPNGQTLNHRTPWIE 434 (458)
T ss_pred cceEEEeccccccCCCCccccCcCCcCC
Confidence 6899887 78899986
No 18
>PHA03141 helicase-primase primase subunit; Provisional
Probab=26.94 E-value=10 Score=21.84 Aligned_cols=18 Identities=33% Similarity=1.010 Sum_probs=12.8
Q ss_pred eeEEEec---CCCCCeEEeee
Q psy17336 5 ACCWYRD---PHGLPWIEYLH 22 (28)
Q Consensus 5 t~cw~rd---~h~lp~ieYlh 22 (28)
..||+.+ |-+..|..|||
T Consensus 47 p~cW~~~~~lP~ni~y~~Yl~ 67 (101)
T PHA03141 47 PVCWHQKLPLPLNIDFAAYLH 67 (101)
T ss_pred ceEecCCCCCCccCcHHHHHH
Confidence 3699987 45667777776
No 19
>COG1426 Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]
Probab=26.03 E-value=30 Score=21.65 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=9.1
Q ss_pred CeeeeeEEEec
Q psy17336 1 MLFSACCWYRD 11 (28)
Q Consensus 1 MvFst~cw~rd 11 (28)
|.|+..||.+-
T Consensus 243 ~~f~~~~w~~v 253 (284)
T COG1426 243 INFTADCWIEV 253 (284)
T ss_pred EEEeccccEEE
Confidence 57999999874
No 20
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=24.87 E-value=48 Score=15.20 Aligned_cols=9 Identities=33% Similarity=0.863 Sum_probs=7.3
Q ss_pred eEEEecCCC
Q psy17336 6 CCWYRDPHG 14 (28)
Q Consensus 6 ~cw~rd~h~ 14 (28)
-||..|+..
T Consensus 3 ~vWvpD~~e 11 (42)
T PF02736_consen 3 WVWVPDPKE 11 (42)
T ss_dssp EEEEEESSS
T ss_pred EEEEeCCcc
Confidence 589998875
No 21
>KOG1089|consensus
Probab=24.84 E-value=50 Score=23.56 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=17.1
Q ss_pred eeEEEecCCCCCeEEeeee
Q psy17336 5 ACCWYRDPHGLPWIEYLHS 23 (28)
Q Consensus 5 t~cw~rd~h~lp~ieYlht 23 (28)
-+||.|+-..+|-..|+|-
T Consensus 190 ~~~~fRs~gR~Pvl~y~h~ 208 (573)
T KOG1089|consen 190 KSAKFRSGGRFPVLSYSHK 208 (573)
T ss_pred ccchhccCCccceEEEEec
Confidence 4799999999999999994
No 22
>PRK11354 kil FtsZ inhibitor protein; Reviewed
Probab=24.17 E-value=27 Score=19.21 Aligned_cols=9 Identities=22% Similarity=0.482 Sum_probs=7.1
Q ss_pred eeeecCCCC
Q psy17336 20 YLHSGASKI 28 (28)
Q Consensus 20 Ylhtga~ki 28 (28)
|||++.++|
T Consensus 42 Yl~~~~e~~ 50 (73)
T PRK11354 42 YIRTLTTKT 50 (73)
T ss_pred EEEeeeEEE
Confidence 889888764
No 23
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.13 E-value=61 Score=15.51 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=10.5
Q ss_pred eeeEEEecCCCCCe
Q psy17336 4 SACCWYRDPHGLPW 17 (28)
Q Consensus 4 st~cw~rd~h~lp~ 17 (28)
+.++|.+||.+-.+
T Consensus 97 g~~~~~~DPdGn~i 110 (114)
T cd07261 97 GYTFVALDPDGHRL 110 (114)
T ss_pred ccEEEEECCCCCEE
Confidence 45689999988644
No 24
>PF07383 DUF1496: Protein of unknown function (DUF1496); InterPro: IPR009971 This family consists of several bacterial proteins of around 90 residues in length. Members of this family seem to be found exclusively in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
Probab=23.88 E-value=55 Score=16.74 Aligned_cols=10 Identities=40% Similarity=1.182 Sum_probs=7.7
Q ss_pred eeEEEecCCC
Q psy17336 5 ACCWYRDPHG 14 (28)
Q Consensus 5 t~cw~rd~h~ 14 (28)
.+|||.|...
T Consensus 13 r~C~Yqdq~Y 22 (56)
T PF07383_consen 13 RCCYYQDQAY 22 (56)
T ss_pred eEEEEcCCcc
Confidence 5899988753
Done!