Query psy17336
Match_columns 28
No_of_seqs 18 out of 20
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 19:40:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ox0_A JMJC domain-containing 99.3 3.9E-13 1.3E-17 85.9 0.9 28 1-28 202-229 (381)
2 3opt_A DNA damage-responsive t 99.2 9.4E-13 3.2E-17 84.5 0.9 28 1-28 227-254 (373)
3 3dxt_A JMJC domain-containing 99.2 1.2E-12 4.1E-17 83.4 0.9 28 1-28 184-211 (354)
4 2xxz_A Lysine-specific demethy 98.8 1.4E-09 4.8E-14 68.6 0.9 28 1-28 209-236 (332)
5 3avr_A Lysine-specific demethy 98.7 3.2E-09 1.1E-13 70.1 0.9 28 1-28 268-295 (531)
6 4ask_A Lysine-specific demethy 98.6 8.9E-09 3E-13 68.5 0.9 28 1-28 243-270 (510)
7 1doi_A 2Fe-2S ferredoxin; halo 56.4 4.3 0.00015 21.6 1.1 8 16-23 1-8 (128)
8 1a8d_A Tetanus neurotoxin; clo 52.4 7.6 0.00026 25.9 1.9 12 3-14 87-98 (452)
9 1icf_I Protein (invariant chai 40.2 15 0.00052 17.9 1.5 12 5-16 39-50 (65)
10 2dsq_G Insulin-like growth fac 36.4 19 0.00064 18.8 1.6 12 5-16 61-73 (94)
11 2h7t_A Insulin-like growth fac 34.5 19 0.00066 19.3 1.5 12 4-15 62-74 (107)
12 1zt3_A Insulin-like growth fac 31.4 22 0.00074 18.1 1.3 12 5-16 55-67 (80)
13 2dsr_G Insulin-like growth fac 29.8 23 0.00078 18.1 1.2 12 4-15 52-64 (82)
14 1flc_B Haemagglutinin-esterase 26.8 12 0.00042 22.3 -0.2 11 3-13 133-143 (175)
15 1rmj_A Insulin-like growth fac 24.9 32 0.0011 18.4 1.3 12 5-16 77-88 (107)
16 4evx_A Putative phage endolysi 24.2 46 0.0016 16.9 1.8 19 8-26 25-43 (106)
17 3zy2_A Putative GDP-fucose pro 22.2 23 0.00078 22.9 0.4 8 16-23 45-52 (362)
18 2vu9_A Botulinum neurotoxin A 21.2 51 0.0018 22.1 1.9 12 3-14 88-99 (444)
No 1
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=99.29 E-value=3.9e-13 Score=85.90 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=27.1
Q ss_pred CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28 (28)
Q Consensus 1 MvFst~cw~rd~h~lp~ieYlhtga~ki 28 (28)
|+||++|||+|||+|+||+|||.||+|+
T Consensus 202 m~~S~f~WH~ED~~L~SINYlH~GapK~ 229 (381)
T 2ox0_A 202 MWKTSFAWHTEDMDLYSINYLHFGEPKS 229 (381)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred ccccCcCceecCCcceeeEEeecCCceE
Confidence 8899999999999999999999999995
No 2
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=99.25 E-value=9.4e-13 Score=84.46 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=27.0
Q ss_pred CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28 (28)
Q Consensus 1 MvFst~cw~rd~h~lp~ieYlhtga~ki 28 (28)
|.||++|||+|||+|+||+|||.||+|+
T Consensus 227 m~~Stf~WH~ED~~L~SINYlH~GapK~ 254 (373)
T 3opt_A 227 LWKASFSWHLEDQDLYSINYIHFGAPKQ 254 (373)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred cccCCcceeecCCcceeEEEeecCCCeE
Confidence 8899999999999999999999999985
No 3
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=99.23 E-value=1.2e-12 Score=83.41 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=27.0
Q ss_pred CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28 (28)
Q Consensus 1 MvFst~cw~rd~h~lp~ieYlhtga~ki 28 (28)
|.||++|||+|||+|+||+|||.|++|+
T Consensus 184 m~~Stf~WH~ED~~L~SINYlH~GapK~ 211 (354)
T 3dxt_A 184 MWKTTFAWHTEDMDLYSINYLHLGEPKT 211 (354)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred cccCCCcceecCCcceEEEEEecCCceE
Confidence 8899999999999999999999999995
No 4
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=98.76 E-value=1.4e-09 Score=68.56 Aligned_cols=28 Identities=4% Similarity=-0.249 Sum_probs=26.8
Q ss_pred CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28 (28)
Q Consensus 1 MvFst~cw~rd~h~lp~ieYlhtga~ki 28 (28)
|.||++|||+|+++|.+|+|+|.|++|+
T Consensus 209 ~~gS~t~~H~Ed~~l~SiNynhgp~~~~ 236 (332)
T 2xxz_A 209 VPGSRTPGHQENNNFCSVNINIGPGDCE 236 (332)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred cCcccccceecCCcceeEEeecCCCceE
Confidence 7899999999999999999999999985
No 5
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=98.68 E-value=3.2e-09 Score=70.14 Aligned_cols=28 Identities=4% Similarity=-0.249 Sum_probs=26.8
Q ss_pred CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28 (28)
Q Consensus 1 MvFst~cw~rd~h~lp~ieYlhtga~ki 28 (28)
|.||++|||+|++++++|+|+|.|++||
T Consensus 268 ~~gS~t~~H~E~~~l~SiNynhggg~~~ 295 (531)
T 3avr_A 268 VPGSRTPGHQENNNFCSVNINIGPGDCE 295 (531)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred cCcccccceecCCcceeeEeecCCCCeE
Confidence 6799999999999999999999999985
No 6
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=98.59 E-value=8.9e-09 Score=68.52 Aligned_cols=28 Identities=4% Similarity=-0.249 Sum_probs=26.7
Q ss_pred CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336 1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28 (28)
Q Consensus 1 MvFst~cw~rd~h~lp~ieYlhtga~ki 28 (28)
|.||++|||+|+++|++|+|+|.|++|+
T Consensus 243 m~gS~t~wH~Ed~~l~SINynhggg~c~ 270 (510)
T 4ask_A 243 VPGSRTPGHQENNNFCSVNINIGPGDCE 270 (510)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred cccccccceecCCcceeEEEeecCCcee
Confidence 7899999999999999999999999985
No 7
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=56.38 E-value=4.3 Score=21.55 Aligned_cols=8 Identities=50% Similarity=0.912 Sum_probs=6.8
Q ss_pred CeEEeeee
Q psy17336 16 PWIEYLHS 23 (28)
Q Consensus 16 p~ieYlht 23 (28)
|.|||||+
T Consensus 1 ~~~~~~~~ 8 (128)
T 1doi_A 1 PTVEYLNY 8 (128)
T ss_dssp CEEEEEEH
T ss_pred CceeEEEE
Confidence 67999996
No 8
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A*
Probab=52.36 E-value=7.6 Score=25.88 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=10.6
Q ss_pred eeeeEEEecCCC
Q psy17336 3 FSACCWYRDPHG 14 (28)
Q Consensus 3 Fst~cw~rd~h~ 14 (28)
||.+||.|.+-.
T Consensus 87 FSISFWvK~~k~ 98 (452)
T 1a8d_A 87 FTVSFWLRVPKV 98 (452)
T ss_dssp EEEEEEEECCCC
T ss_pred eEEEEEEECCCc
Confidence 999999999764
No 9
>1icf_I Protein (invariant chain); cysteine proteinase, cathepsin, MHC class II, invariant CHAI thyroglobulin type-1 domain, hydrolase; HET: NAG; 2.00A {Homo sapiens} SCOP: g.28.1.1 PDB: 1l3h_A
Probab=40.20 E-value=15 Score=17.90 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=9.4
Q ss_pred eeEEEecCCCCC
Q psy17336 5 ACCWYRDPHGLP 16 (28)
Q Consensus 5 t~cw~rd~h~lp 16 (28)
-.||.+|..+.+
T Consensus 39 g~CWCVd~~G~~ 50 (65)
T 1icf_I 39 GYCWCVFPNGTE 50 (65)
T ss_dssp TEEEEBCTTSCB
T ss_pred CeEEEECCCCCC
Confidence 369999998754
No 10
>2dsq_G Insulin-like growth factor-binding protein 1; IGF, IGFBP, protein binding/hormone/growth factor complex; 2.80A {Homo sapiens} SCOP: g.28.1.1
Probab=36.36 E-value=19 Score=18.80 Aligned_cols=12 Identities=33% Similarity=0.828 Sum_probs=9.4
Q ss_pred eeEEEecCC-CCC
Q psy17336 5 ACCWYRDPH-GLP 16 (28)
Q Consensus 5 t~cw~rd~h-~lp 16 (28)
-.||.+|+. +.+
T Consensus 61 G~CWCVd~~tG~~ 73 (94)
T 2dsq_G 61 GLCWCVYPWNGKR 73 (94)
T ss_dssp CEEEEBCTTTCCB
T ss_pred ceEEEecCCCCeE
Confidence 479999988 643
No 11
>2h7t_A Insulin-like growth factor-binding protein 2; thyroglobulin type 1 fold, protein binding; NMR {Homo sapiens}
Probab=34.49 E-value=19 Score=19.26 Aligned_cols=12 Identities=33% Similarity=0.958 Sum_probs=8.8
Q ss_pred eeeEEEecC-CCC
Q psy17336 4 SACCWYRDP-HGL 15 (28)
Q Consensus 4 st~cw~rd~-h~l 15 (28)
+-.||.+|+ .+-
T Consensus 62 ~G~CWCVD~~~G~ 74 (107)
T 2h7t_A 62 RGECWCVNPNTGK 74 (107)
T ss_dssp CCEEEECSSTTCC
T ss_pred cceEEEecCCCCe
Confidence 358999996 554
No 12
>1zt3_A Insulin-like growth factor binding protein 1; IGFBP-1, amniotic fluid, C-terminal domain, metal-binding, peptide binding protein; 1.80A {Homo sapiens} PDB: 1zt5_A
Probab=31.44 E-value=22 Score=18.06 Aligned_cols=12 Identities=33% Similarity=0.828 Sum_probs=9.3
Q ss_pred eeEEEecCC-CCC
Q psy17336 5 ACCWYRDPH-GLP 16 (28)
Q Consensus 5 t~cw~rd~h-~lp 16 (28)
-.||.+|+. +.+
T Consensus 55 g~CWCVd~~tG~~ 67 (80)
T 1zt3_A 55 GLCWCVYPWNGKR 67 (80)
T ss_dssp CCEEEBCTTTCCB
T ss_pred ceEEEecCCCCEE
Confidence 479999988 543
No 13
>2dsr_G Insulin-like growth factor-binding protein 4; IGF, IGFBP, protein binding/hormone/growth factor complex; 2.10A {Homo sapiens} SCOP: g.28.1.1
Probab=29.78 E-value=23 Score=18.10 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=8.8
Q ss_pred eeeEEEecCC-CC
Q psy17336 4 SACCWYRDPH-GL 15 (28)
Q Consensus 4 st~cw~rd~h-~l 15 (28)
+-.||.+|+. +.
T Consensus 52 ~g~CWCVd~~~G~ 64 (82)
T 2dsr_G 52 RGKCWCVDRKTGV 64 (82)
T ss_dssp CCCEEEBCTTTCC
T ss_pred CceEEEecCCCCE
Confidence 3579999974 54
No 14
>1flc_B Haemagglutinin-esterase-fusion glycoprotein; receptor binding, membrane fusion, influenz hydrolase; HET: NDG NAG BMA MAN; 3.20A {Influenza c virus} SCOP: h.3.1.1
Probab=26.84 E-value=12 Score=22.29 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=8.5
Q ss_pred eeeeEEEecCC
Q psy17336 3 FSACCWYRDPH 13 (28)
Q Consensus 3 Fst~cw~rd~h 13 (28)
.|.+||..|++
T Consensus 133 vspgcwiidnn 143 (175)
T 1flc_B 133 VSPGCWIIDNN 143 (175)
T ss_dssp CSTTEECCCTT
T ss_pred eCCCeEEecCc
Confidence 36799998875
No 15
>1rmj_A Insulin-like growth factor binding protein 6; hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.28.1.1
Probab=24.86 E-value=32 Score=18.44 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.5
Q ss_pred eeEEEecCCCCC
Q psy17336 5 ACCWYRDPHGLP 16 (28)
Q Consensus 5 t~cw~rd~h~lp 16 (28)
-.||.+|..+.+
T Consensus 77 G~CWCVD~~G~e 88 (107)
T 1rmj_A 77 GPCWCVDRMGKS 88 (107)
T ss_dssp CCEEEBCTTCCB
T ss_pred ceEEEECCCCCC
Confidence 479999987754
No 16
>4evx_A Putative phage endolysin; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MLY MSE; 1.70A {Salmonella enterica subsp}
Probab=24.18 E-value=46 Score=16.86 Aligned_cols=19 Identities=37% Similarity=0.336 Sum_probs=16.5
Q ss_pred EEecCCCCCeEEeeeecCC
Q psy17336 8 WYRDPHGLPWIEYLHSGAS 26 (28)
Q Consensus 8 w~rd~h~lp~ieYlhtga~ 26 (28)
-|+|+.+.|-|=|=||+.+
T Consensus 25 ~Y~D~~G~~TIGyGht~~~ 43 (106)
T 4evx_A 25 XYRDRQGNWVIGYGHMLTP 43 (106)
T ss_dssp EEECTTSCEEEETTEECCT
T ss_pred cccCCCCCeEEEEeeccCC
Confidence 4789999999999999754
No 17
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=22.19 E-value=23 Score=22.91 Aligned_cols=8 Identities=38% Similarity=0.821 Sum_probs=6.9
Q ss_pred CeEEeeee
Q psy17336 16 PWIEYLHS 23 (28)
Q Consensus 16 p~ieYlht 23 (28)
|||||.|-
T Consensus 45 pwi~y~~~ 52 (362)
T 3zy2_A 45 NFIEFKHP 52 (362)
T ss_dssp CEEECSSS
T ss_pred ccccccCC
Confidence 89999884
No 18
>2vu9_A Botulinum neurotoxin A heavy chain; hydrolase, metalloprotease, ganglioside, metal-B toxin, protease, membrane, receptor, secreted; HET: BGC GAL SIA NGA; 1.6A {Clostridium botulinum} PDB: 2vua_A 3fuo_A
Probab=21.18 E-value=51 Score=22.15 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=10.6
Q ss_pred eeeeEEEecCCC
Q psy17336 3 FSACCWYRDPHG 14 (28)
Q Consensus 3 Fst~cw~rd~h~ 14 (28)
||.+.|.|.|..
T Consensus 88 FSIsFWiRipk~ 99 (444)
T 2vu9_A 88 FSTSFWIRIPKY 99 (444)
T ss_dssp EEEEEEEECCCC
T ss_pred eEEEEEEecCCc
Confidence 999999999854
Done!