Query psy17336
Match_columns 28
No_of_seqs 18 out of 20
Neff 2.5
Searched_HMMs 13730
Date Fri Aug 16 19:40:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17336.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17336hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1icfi_ g.28.1.1 (I:) Class II 42.2 4.7 0.00034 18.9 1.0 12 5-16 39-50 (65)
2 d2dsqg1 g.28.1.1 (G:149-231) I 37.8 7.9 0.00057 18.7 1.5 12 5-16 53-65 (83)
3 d1b09a_ b.29.1.5 (A:) C-reacti 37.6 9.8 0.00072 18.4 1.9 10 3-12 33-42 (206)
4 d1f0xa1 d.58.32.2 (A:274-567) 36.5 4.7 0.00035 22.0 0.6 14 12-25 27-41 (294)
5 d1w7ja1 b.34.3.1 (A:5-62) Myos 34.5 8.6 0.00063 17.7 1.3 9 5-13 7-15 (58)
6 d3btaa1 b.29.1.6 (A:872-1078) 31.6 18 0.0013 17.1 2.2 12 3-14 69-80 (207)
7 d2dsrg1 g.28.1.1 (G:151-229) I 27.0 11 0.00082 17.9 1.0 11 6-16 54-65 (79)
8 d1rmja_ g.28.1.1 (A:) Insulin- 25.6 15 0.0011 18.6 1.4 11 6-16 78-88 (107)
9 d2c21a1 d.32.1.1 (A:3-141) Gly 25.2 21 0.0015 15.0 1.7 12 5-16 105-116 (139)
10 d1xy7a_ d.32.1.9 (A:) Hypothet 25.0 22 0.0016 16.0 1.8 13 6-18 120-132 (135)
11 d1jifa_ d.32.1.2 (A:) Bleomyci 22.6 30 0.0022 14.8 2.0 12 4-15 103-114 (122)
12 d1epwa1 b.29.1.6 (A:862-1079) 21.8 29 0.0021 16.0 1.9 12 3-14 64-75 (218)
13 d1v7wa2 b.30.5.3 (A:1-270) Chi 21.3 17 0.0012 19.7 1.1 12 13-24 20-31 (270)
No 1
>d1icfi_ g.28.1.1 (I:) Class II MHC associated p41 invariant chain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.16 E-value=4.7 Score=18.91 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=9.7
Q ss_pred eeEEEecCCCCC
Q psy17336 5 ACCWYRDPHGLP 16 (28)
Q Consensus 5 t~cw~rd~h~lp 16 (28)
..||.+|+.+..
T Consensus 39 g~CWCVd~~G~e 50 (65)
T d1icfi_ 39 GYCWCVFPNGTE 50 (65)
T ss_dssp TEEEEBCTTSCB
T ss_pred CEEEEECCCCcE
Confidence 469999998855
No 2
>d2dsqg1 g.28.1.1 (G:149-231) Insulin-like growth factor-binding protein 1, IGFBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.75 E-value=7.9 Score=18.67 Aligned_cols=12 Identities=33% Similarity=0.828 Sum_probs=9.1
Q ss_pred eeEEEecCC-CCC
Q psy17336 5 ACCWYRDPH-GLP 16 (28)
Q Consensus 5 t~cw~rd~h-~lp 16 (28)
..||.+|+. +.+
T Consensus 53 g~CWCVd~~~G~~ 65 (83)
T d2dsqg1 53 GLCWCVYPWNGKR 65 (83)
T ss_dssp CEEEEBCTTTCCB
T ss_pred ceEEEEeCCCCEE
Confidence 469999984 654
No 3
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.56 E-value=9.8 Score=18.43 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=8.5
Q ss_pred eeeeEEEecC
Q psy17336 3 FSACCWYRDP 12 (28)
Q Consensus 3 Fst~cw~rd~ 12 (28)
||.++|.+-+
T Consensus 33 fTvs~Wvk~~ 42 (206)
T d1b09a_ 33 FTVCLHFYTE 42 (206)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEEEEeC
Confidence 8999999854
No 4
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=36.47 E-value=4.7 Score=22.02 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=11.2
Q ss_pred CCCCC-eEEeeeecC
Q psy17336 12 PHGLP-WIEYLHSGA 25 (28)
Q Consensus 12 ~h~lp-~ieYlhtga 25 (28)
...|| +-||+|+|+
T Consensus 27 ~~~LP~sGE~~h~~~ 41 (294)
T d1f0xa1 27 FENLPVAGEYMHRDI 41 (294)
T ss_dssp CSSCCSEEEEEEHHH
T ss_pred cccCCcceeeeccch
Confidence 45689 799999875
No 5
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=34.51 E-value=8.6 Score=17.68 Aligned_cols=9 Identities=44% Similarity=0.944 Sum_probs=7.4
Q ss_pred eeEEEecCC
Q psy17336 5 ACCWYRDPH 13 (28)
Q Consensus 5 t~cw~rd~h 13 (28)
|-||++|+.
T Consensus 7 tRvWiPd~e 15 (58)
T d1w7ja1 7 ARVWIPDPE 15 (58)
T ss_dssp CEEEEEETT
T ss_pred cEEEEECcc
Confidence 679999886
No 6
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
Probab=31.65 E-value=18 Score=17.12 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=9.7
Q ss_pred eeeeEEEecCCC
Q psy17336 3 FSACCWYRDPHG 14 (28)
Q Consensus 3 Fst~cw~rd~h~ 14 (28)
||.+||.+-+..
T Consensus 69 fTis~Wvk~~~~ 80 (207)
T d3btaa1 69 FSTSFWIRIPKY 80 (207)
T ss_dssp EEEEEEEECCCC
T ss_pred EEEEEEEecCCC
Confidence 899999986653
No 7
>d2dsrg1 g.28.1.1 (G:151-229) Insulin-like growth factor-binding protein 4, IGFBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.05 E-value=11 Score=17.90 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=8.3
Q ss_pred eEEEecC-CCCC
Q psy17336 6 CCWYRDP-HGLP 16 (28)
Q Consensus 6 ~cw~rd~-h~lp 16 (28)
.||.+|+ ++-+
T Consensus 54 ~CWCVd~~~G~~ 65 (79)
T d2dsrg1 54 KCWCVDRKTGVK 65 (79)
T ss_dssp CEEEBCTTTCCB
T ss_pred EEEEEcCCCCEE
Confidence 6999997 4654
No 8
>d1rmja_ g.28.1.1 (A:) Insulin-like growth factor binding protein 6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.57 E-value=15 Score=18.59 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=8.9
Q ss_pred eEEEecCCCCC
Q psy17336 6 CCWYRDPHGLP 16 (28)
Q Consensus 6 ~cw~rd~h~lp 16 (28)
.||.+|+.+-+
T Consensus 78 ~CWCVd~~G~~ 88 (107)
T d1rmja_ 78 PCWCVDRMGKS 88 (107)
T ss_dssp CEEEBCTTCCB
T ss_pred eEEeECCCCCC
Confidence 59999998744
No 9
>d2c21a1 d.32.1.1 (A:3-141) Glyoxalase I (lactoylglutathione lyase) {Leishmania major [TaxId: 5664]}
Probab=25.23 E-value=21 Score=15.03 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=9.2
Q ss_pred eeEEEecCCCCC
Q psy17336 5 ACCWYRDPHGLP 16 (28)
Q Consensus 5 t~cw~rd~h~lp 16 (28)
.+|+.+||.+.-
T Consensus 105 ~~~~~~DPdGn~ 116 (139)
T d2c21a1 105 FMAFVVDPDGYY 116 (139)
T ss_dssp SEEEEECTTSCE
T ss_pred EEEEEECCCCCE
Confidence 468899998863
No 10
>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.96 E-value=22 Score=15.96 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.9
Q ss_pred eEEEecCCCCCeE
Q psy17336 6 CCWYRDPHGLPWI 18 (28)
Q Consensus 6 ~cw~rd~h~lp~i 18 (28)
..|.+||.+..|.
T Consensus 120 ~~~v~Dp~G~~W~ 132 (135)
T d1xy7a_ 120 KGKVTDPFGVTWI 132 (135)
T ss_dssp EEEEECTTSCEEE
T ss_pred EEEEECCCCCEEE
Confidence 5799999998874
No 11
>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}
Probab=22.57 E-value=30 Score=14.79 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=9.5
Q ss_pred eeeEEEecCCCC
Q psy17336 4 SACCWYRDPHGL 15 (28)
Q Consensus 4 st~cw~rd~h~l 15 (28)
...+|.+||.+-
T Consensus 103 ~~~~~~~DPdGn 114 (122)
T d1jifa_ 103 GREFAVRDPAGN 114 (122)
T ss_dssp EEEEEEECTTCC
T ss_pred eEEEEEECCCCC
Confidence 457999999874
No 12
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}
Probab=21.82 E-value=29 Score=15.96 Aligned_cols=12 Identities=42% Similarity=0.755 Sum_probs=9.3
Q ss_pred eeeeEEEecCCC
Q psy17336 3 FSACCWYRDPHG 14 (28)
Q Consensus 3 Fst~cw~rd~h~ 14 (28)
||.++|.+-+..
T Consensus 64 ~Tis~Wv~~~~~ 75 (218)
T d1epwa1 64 FSVSFWIRIPKY 75 (218)
T ss_dssp EEEEEEEECCCC
T ss_pred EEEEEEeccCCC
Confidence 789999986653
No 13
>d1v7wa2 b.30.5.3 (A:1-270) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}
Probab=21.30 E-value=17 Score=19.73 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=9.5
Q ss_pred CCCCeEEeeeec
Q psy17336 13 HGLPWIEYLHSG 24 (28)
Q Consensus 13 h~lp~ieYlhtg 24 (28)
--.|||+||=.|
T Consensus 20 tP~Pw~n~lsN~ 31 (270)
T d1v7wa2 20 VPAPWTNYLGTE 31 (270)
T ss_dssp CSSCCEEEECSS
T ss_pred CCCceeEEeecC
Confidence 468999999655
Done!