RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17336
         (28 letters)



>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
           TRI/dimethyllysine demethylase, oxidoredu structural
           protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
           PDB: 3avs_A*
          Length = 531

 Score = 39.5 bits (91), Expect = 3e-06
 Identities = 1/28 (3%), Positives = 7/28 (25%)

Query: 1   MLFSACCWYRDPHGLPWIEYLHSGASKI 28
           +  S    +++ +    +          
Sbjct: 268 VPGSRTPGHQENNNFCSVNINIGPGDCE 295


>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
           inhibitor, lysine specific HI demethylase; HET: K0I;
           1.86A {Homo sapiens} PDB: 2xue_A*
          Length = 510

 Score = 35.2 bits (80), Expect = 9e-05
 Identities = 1/28 (3%), Positives = 7/28 (25%)

Query: 1   MLFSACCWYRDPHGLPWIEYLHSGASKI 28
           +  S    +++ +    +          
Sbjct: 243 VPGSRTPGHQENNNFCSVNINIGPGDCE 270


>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded
           beta helix, demethylase, oxygenase, SGC, STR genomics,
           structural genomics consortium, oxidoreductase; HET: MLY
           ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A*
           2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A*
           3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A*
           2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
          Length = 381

 Score = 33.1 bits (74), Expect = 5e-04
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 1   MLFSACCWYRDPHGLPWIEYLHSGASKI 28
           M  ++  W+ +   L  I YLH G  K 
Sbjct: 202 MWKTSFAWHTEDMDLYSINYLHFGEPKS 229


>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone
           demethylation, oxygenase, chromatin modification; HET:
           8XQ; 1.80A {Homo sapiens}
          Length = 332

 Score = 30.9 bits (69), Expect = 0.003
 Identities = 1/28 (3%), Positives = 7/28 (25%)

Query: 1   MLFSACCWYRDPHGLPWIEYLHSGASKI 28
           +  S    +++ +    +          
Sbjct: 209 VPGSRTPGHQENNNFCSVNINIGPGDCE 236


>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone
           demethylase, catalytic core, oxidoreductase; HET: DNA
           AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
          Length = 373

 Score = 30.4 bits (67), Expect = 0.005
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 1   MLFSACCWYRDPHGLPWIEYLHSGASK 27
           +  ++  W+ +   L  I Y+H GA K
Sbjct: 227 LWKASFSWHLEDQDLYSINYIHFGAPK 253


>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone
           demethylase, H3K9, jumonji domain-CONT protein 2D,
           oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A*
           2w2i_A*
          Length = 354

 Score = 28.0 bits (61), Expect = 0.031
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 1   MLFSACCWYRDPHGLPWIEYLHSGASKI 28
           M  +   W+ +   L  I YLH G  K 
Sbjct: 184 MWKTTFAWHTEDMDLYSINYLHLGEPKT 211


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.6 bits (53), Expect = 0.45
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 8   WYRDPHGLPWIEYLHS 23
           W  +P   P  +YL S
Sbjct: 218 WLENPSNTPDKDYLLS 233


>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT
           structure initiative; HET: MSE; 1.40A {Pseudomonas
           aeruginosa} SCOP: d.32.1.7
          Length = 136

 Score = 22.6 bits (48), Expect = 2.3
 Identities = 4/14 (28%), Positives = 5/14 (35%)

Query: 4   SACCWYRDPHGLPW 17
               W  D  G+ W
Sbjct: 116 QRFAWLADRFGVSW 129


>3oms_A PHNB protein; structural genomics, PSI-2, protein structure
           initiative, MI center for structural genomics, MCSG,
           methyltransferase, GL family; 1.90A {Bacillus cereus}
          Length = 138

 Score = 22.7 bits (48), Expect = 2.3
 Identities = 4/13 (30%), Positives = 6/13 (46%)

Query: 5   ACCWYRDPHGLPW 17
              W  D +G+ W
Sbjct: 120 KFGWLNDKYGVSW 132


>1hi7_A PS2 protein; growth factor, cell motility, tumor suppressor,
          trefoil domain, signal; NMR {Homo sapiens} SCOP:
          g.16.1.1 PDB: 1ps2_A
          Length = 60

 Score = 21.5 bits (45), Expect = 4.9
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 6  CCWYRDPHGLPW 17
          CC+     G+PW
Sbjct: 32 CCFDDTVRGVPW 43


>1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil
          domain, spectroscopy, cell motility factor; NMR {Homo
          sapiens} SCOP: g.16.1.1 PDB: 1pe3_1
          Length = 59

 Score = 21.0 bits (44), Expect = 7.1
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 6  CCWYRDPHGLPW 17
          CC+     G+PW
Sbjct: 36 CCFDSRIPGVPW 47


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.143    0.566 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 465,645
Number of extensions: 9562
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 12
Length of query: 28
Length of database: 6,701,793
Length adjustment: 3
Effective length of query: 25
Effective length of database: 6,618,030
Effective search space: 165450750
Effective search space used: 165450750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.0 bits)