RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17336
         (28 letters)



>d1tsja_ d.32.1.7 (A:) Hypothetical protein MW1090 {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 129

 Score = 21.5 bits (45), Expect = 2.3
 Identities = 3/14 (21%), Positives = 6/14 (42%)

Query: 4   SACCWYRDPHGLPW 17
               W +D  G+ +
Sbjct: 110 REFAWVQDKFGVSF 123


>d1u7ia_ d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 134

 Score = 20.8 bits (43), Expect = 3.7
 Identities = 4/14 (28%), Positives = 5/14 (35%)

Query: 4   SACCWYRDPHGLPW 17
               W  D  G+ W
Sbjct: 115 QRFAWLADRFGVSW 128


>d2pspa1 g.16.1.1 (A:1-53) Pancreatic spasmolytic polypeptide {Pig
          (Sus scrofa) [TaxId: 9823]}
          Length = 53

 Score = 19.4 bits (40), Expect = 9.5
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 6  CCWYRDPHGLPW 17
          CC+     G+PW
Sbjct: 34 CCFDSQVPGVPW 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.566 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 130,254
Number of extensions: 2202
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 3
Length of query: 28
Length of database: 2,407,596
Length adjustment: 3
Effective length of query: 25
Effective length of database: 2,366,406
Effective search space: 59160150
Effective search space used: 59160150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)