BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17338
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J6W|A Chain A, R164n Mutant Of The Runx1 Runt Domain
pdb|2J6W|B Chain B, R164n Mutant Of The Runx1 Runt Domain
Length = 140
Score = 155 bits (393), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R++ +LA+HPGEL RT P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 62 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 97
>pdb|1EAN|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAO|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAO|B Chain B, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
Length = 140
Score = 155 bits (393), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R++ +LA+HPGEL RT P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 62 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 97
>pdb|1CMO|A Chain A, Immunoglobulin Motif Dna-Recognition And
Heterodimerization For The Pebp2CBF RUNT-Domain
Length = 127
Score = 155 bits (391), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 79/89 (88%)
Query: 28 LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENY 87
+LA+HPGEL RT P+ +C+VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+ AGNDENY
Sbjct: 3 VLADHPGELVRTDSPNFLCSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENY 62
Query: 88 CGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 63 SAELRNATAAMKNQVARFNDLRFVGRSGR 91
>pdb|1H9D|A Chain A, Aml1CBF-BetaDNA COMPLEX
pdb|1H9D|C Chain C, Aml1CBF-BetaDNA COMPLEX
pdb|1E50|A Chain A, Aml1CBF COMPLEX
pdb|1E50|C Chain C, Aml1CBF COMPLEX
pdb|1E50|E Chain E, Aml1CBF COMPLEX
pdb|1E50|G Chain G, Aml1CBF COMPLEX
pdb|1E50|Q Chain Q, Aml1CBF COMPLEX
pdb|1E50|R Chain R, Aml1CBF COMPLEX
Length = 134
Score = 152 bits (383), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 78/89 (87%)
Query: 28 LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENY 87
+LA+HPGEL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY
Sbjct: 5 VLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENY 64
Query: 88 CGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 65 SAELRNATAAMKNQVARFNDLRFVGRSGR 93
>pdb|1EAQ|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAQ|B Chain B, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
Length = 140
Score = 152 bits (383), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 80/96 (83%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R+ +LA+HPGEL RT P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSXVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVX 61
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA KNQVA+FNDLRFVGRSGR
Sbjct: 62 AGNDENYSAELRNATAAXKNQVARFNDLRFVGRSGR 97
>pdb|1LJM|A Chain A, Dna Recognition Is Mediated By Conformational Transition
And By Dna Bending
pdb|1LJM|B Chain B, Dna Recognition Is Mediated By Conformational Transition
And By Dna Bending
Length = 131
Score = 151 bits (382), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 78/89 (87%)
Query: 28 LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENY 87
+LA+HPGEL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY
Sbjct: 4 VLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENY 63
Query: 88 CGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 64 SAELRNATAAMKNQVARFNDLRFVGRSGR 92
>pdb|1IO4|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1HJB|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|F Chain F, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJC|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN BOUND
To A Dna Fragment From The Csf-1r Promoter
pdb|1HJC|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN BOUND
To A Dna Fragment From The Csf-1r Promoter
Length = 123
Score = 141 bits (356), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 72/83 (86%)
Query: 34 GELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRN 93
GEL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY ELRN
Sbjct: 1 GELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRN 60
Query: 94 CTAVMKNQVAKFNDLRFVGRSGR 116
TA MKNQVA+FNDLRFVGRSGR
Sbjct: 61 ATAAMKNQVARFNDLRFVGRSGR 83
>pdb|1CO1|A Chain A, Fold Of The Cbfa
Length = 115
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 71/82 (86%)
Query: 35 ELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNC 94
EL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY ELRN
Sbjct: 1 ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 60
Query: 95 TAVMKNQVAKFNDLRFVGRSGR 116
TA MKNQVA+FNDLRFVGRSGR
Sbjct: 61 TAAMKNQVARFNDLRFVGRSGR 82
>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
Length = 555
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 28 LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVA---FKVVALGDVMDGTIVTIRA--G 82
L A+ P E+ CPH+ V W +N+ LP K L +++ IV A G
Sbjct: 354 LTAKEPTEVESVECPHIAVGV----WEANEKLPETPDRSKCACLDEILPCEIVPFGAESG 409
Query: 83 NDENY----CGELRNCTAVMKN----QVAKFND 107
E Y C ++ +C+ ++ N + +F+D
Sbjct: 410 KYEEYFSYLCSKV-DCSDILANGKTGEYGEFSD 441
>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaripentaose
pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaritriose And Laminaritetraose
Length = 555
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 28 LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVA---FKVVALGDVMDGTIVTIRA--G 82
L A+ P E+ CPH+ V W +N+ LP K L +++ IV A G
Sbjct: 354 LTAKEPTEVESVECPHIAVGV----WEANEKLPETPDRSKCACLDEILPCEIVPFGAESG 409
Query: 83 NDENY----CGELRNCTAVMKN----QVAKFND 107
E Y C ++ +C+ ++ N + +F+D
Sbjct: 410 KYEEYFSYLCSKV-DCSDILANGKTGEYGEFSD 441
>pdb|3RS8|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Ribose
pdb|3RS9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RSF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
pdb|3RSQ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
pdb|3RSS|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
pdb|3RT7|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Glucose
pdb|3RT9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A
pdb|3RTA|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Acetyl
Coenzyme A
pdb|3RTC|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad And
Atp.
pdb|3RTD|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
And Adp.
pdb|3RTE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
And Atp.
pdb|3RTG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A And Atp
pdb|3RU3|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
And Atp.
pdb|3RRB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Amp
pdb|3RRE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Adp
pdb|3RRF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Atp
pdb|3RRJ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RSG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad.
pdb|3RTB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Adenosine-3'-5'-Diphosphate
pdb|3RU2|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
Length = 502
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 10 DNENFISAEVLAERTLDSLLAEHPGELTR 38
D N + VL ER ++L HPGE+ R
Sbjct: 356 DAINVLDTSVLKERKSPAVLTPHPGEMAR 384
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 22 ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKT 58
+RT+ + + +TG P++ + +PTHW T
Sbjct: 457 DRTVSKAMIAYWTNFAKTGDPNMGDSAVPTHWEPYTT 493
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 22 ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKT 58
+RT+ + + +TG P++ + +PTHW T
Sbjct: 457 DRTVSKAMIAYWTNFAKTGDPNMGDSAVPTHWEPYTT 493
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 63 FKVVALGDVMD--GTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLR 109
FK LGD++ GT+ + G +C ELR T ++ KF+ L+
Sbjct: 112 FKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQ 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,919,160
Number of Sequences: 62578
Number of extensions: 139796
Number of successful extensions: 274
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 14
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)