Query psy17338
Match_columns 130
No_of_seqs 86 out of 88
Neff 2.2
Searched_HMMs 46136
Date Fri Aug 16 19:42:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00853 Runt: Runt domain; I 100.0 8.8E-73 1.9E-77 429.9 8.8 104 22-125 1-104 (135)
2 KOG3982|consensus 100.0 9.6E-68 2.1E-72 457.2 6.4 110 18-127 94-203 (475)
3 PRK14238 phosphate transporter 70.9 4.6 0.0001 31.6 3.0 45 75-120 4-65 (271)
4 TIGR02788 VirB11 P-type DNA tr 70.9 8.2 0.00018 31.3 4.5 53 25-88 42-97 (308)
5 COG2274 SunT ABC-type bacterio 68.8 4.9 0.00011 37.4 3.1 35 77-119 477-513 (709)
6 cd01858 NGP_1 NGP-1. Autoanti 67.4 2.4 5.3E-05 30.0 0.7 11 110-120 107-117 (157)
7 COG1132 MdlB ABC-type multidru 65.8 2.4 5.1E-05 36.4 0.5 10 110-119 360-369 (567)
8 PRK13891 conjugal transfer pro 65.7 2.7 5.8E-05 39.2 0.8 94 24-122 395-505 (852)
9 cd03273 ABC_SMC2_euk Eukaryoti 65.1 2.6 5.7E-05 32.4 0.5 16 109-124 29-44 (251)
10 PF13555 AAA_29: P-loop contai 64.0 2.8 6E-05 28.1 0.4 20 101-120 15-38 (62)
11 cd00820 PEPCK_HprK Phosphoenol 63.9 3 6.4E-05 30.4 0.6 15 108-122 18-32 (107)
12 TIGR03729 acc_ester putative p 63.9 7.3 0.00016 29.8 2.7 42 74-115 61-110 (239)
13 COG1116 TauB ABC-type nitrate/ 63.7 2.7 5.9E-05 35.1 0.4 13 109-121 33-45 (248)
14 cd01853 Toc34_like Toc34-like 61.9 3.1 6.6E-05 33.3 0.4 13 108-120 34-46 (249)
15 PF03193 DUF258: Protein of un 61.4 3.3 7.1E-05 32.0 0.5 29 83-119 21-49 (161)
16 TIGR02323 CP_lyasePhnK phospho 61.1 5.5 0.00012 30.3 1.7 12 109-120 33-44 (253)
17 COG3638 ABC-type phosphate/pho 60.6 5.5 0.00012 33.9 1.7 11 110-120 35-45 (258)
18 cd03272 ABC_SMC3_euk Eukaryoti 60.6 3.7 7.9E-05 30.8 0.6 16 109-124 27-42 (243)
19 TIGR02868 CydC thiol reductant 59.8 3.5 7.7E-05 34.8 0.5 12 108-119 364-375 (529)
20 PF01935 DUF87: Domain of unkn 59.1 2.4 5.2E-05 31.7 -0.6 14 110-123 28-41 (229)
21 TIGR00157 ribosome small subun 58.9 3.9 8.5E-05 32.2 0.5 35 76-119 100-134 (245)
22 cd03263 ABC_subfamily_A The AB 57.9 4.1 8.9E-05 30.1 0.5 13 108-120 31-43 (220)
23 cd03279 ABC_sbcCD SbcCD and ot 57.8 3.3 7.3E-05 31.1 -0.0 19 109-127 32-50 (213)
24 cd03224 ABC_TM1139_LivF_branch 56.2 4.5 9.8E-05 29.8 0.5 13 108-120 29-41 (222)
25 cd03225 ABC_cobalt_CbiO_domain 56.0 4.6 0.0001 29.7 0.5 14 108-121 30-43 (211)
26 cd03278 ABC_SMC_barmotin Barmo 55.6 4.8 0.0001 30.5 0.5 14 109-122 26-39 (197)
27 cd03292 ABC_FtsE_transporter F 55.6 4.7 0.0001 29.6 0.5 12 108-119 30-41 (214)
28 cd03235 ABC_Metallic_Cations A 55.2 4.8 0.0001 29.7 0.4 13 108-120 28-40 (213)
29 PRK11174 cysteine/glutathione 55.2 4.7 0.0001 34.6 0.5 11 109-119 380-390 (588)
30 cd03264 ABC_drug_resistance_li 55.1 4.8 0.0001 29.7 0.4 14 108-121 28-41 (211)
31 PRK12288 GTPase RsgA; Reviewed 54.9 4.8 0.0001 34.0 0.4 37 75-120 184-220 (347)
32 cd03274 ABC_SMC4_euk Eukaryoti 54.8 5.2 0.00011 30.7 0.6 16 109-124 29-44 (212)
33 cd03261 ABC_Org_Solvent_Resist 54.4 5 0.00011 30.2 0.5 13 108-120 29-41 (235)
34 PRK14257 phosphate ABC transpo 54.3 5 0.00011 33.0 0.5 14 108-121 111-124 (329)
35 TIGR03797 NHPM_micro_ABC2 NHPM 54.3 5 0.00011 35.4 0.5 12 108-119 482-493 (686)
36 TIGR02673 FtsE cell division A 54.2 5.1 0.00011 29.5 0.5 13 108-120 31-43 (214)
37 cd01857 HSR1_MMR1 HSR1/MMR1. 53.9 13 0.00028 26.0 2.4 14 107-120 85-98 (141)
38 TIGR01193 bacteriocin_ABC ABC- 53.6 5.1 0.00011 35.4 0.5 12 108-119 503-514 (708)
39 PRK11176 lipid transporter ATP 53.4 5.3 0.00011 34.1 0.5 13 108-120 372-384 (582)
40 PRK13539 cytochrome c biogenes 53.1 5.5 0.00012 29.7 0.5 14 108-121 31-44 (207)
41 PRK00098 GTPase RsgA; Reviewed 52.8 5.5 0.00012 32.2 0.4 36 76-120 144-179 (298)
42 cd03269 ABC_putative_ATPase Th 52.8 5.6 0.00012 29.3 0.5 13 108-120 29-41 (210)
43 PLN03232 ABC transporter C fam 52.7 5.4 0.00012 39.3 0.5 12 108-119 1265-1276(1495)
44 cd03262 ABC_HisP_GlnQ_permease 52.6 5.6 0.00012 29.2 0.5 13 108-120 29-41 (213)
45 cd03265 ABC_DrrA DrrA is the A 52.6 5.6 0.00012 29.6 0.5 13 108-120 29-41 (220)
46 TIGR00960 3a0501s02 Type II (G 52.4 5.7 0.00012 29.4 0.5 13 108-120 32-44 (216)
47 COG1126 GlnQ ABC-type polar am 52.3 6.6 0.00014 33.2 0.9 13 108-120 31-43 (240)
48 COG4987 CydC ABC-type transpor 52.0 5.4 0.00012 37.3 0.3 12 109-120 368-379 (573)
49 PF05356 Phage_Coat_B: Phage C 51.9 4.8 0.0001 29.4 0.0 14 97-110 3-16 (83)
50 PRK13894 conjugal transfer ATP 51.6 37 0.00081 28.3 5.2 91 22-122 66-165 (319)
51 PRK10790 putative multidrug tr 51.6 5.8 0.00013 34.1 0.5 11 109-119 371-381 (592)
52 cd03266 ABC_NatA_sodium_export 51.6 6 0.00013 29.2 0.5 13 108-120 34-46 (218)
53 cd03277 ABC_SMC5_euk Eukaryoti 51.4 10 0.00022 29.3 1.7 32 91-123 8-41 (213)
54 cd03293 ABC_NrtD_SsuB_transpor 51.1 6.2 0.00013 29.4 0.5 13 108-120 33-45 (220)
55 COG1135 AbcC ABC-type metal io 50.9 6 0.00013 34.9 0.4 11 109-119 36-46 (339)
56 PRK10584 putative ABC transpor 50.6 6.3 0.00014 29.4 0.5 13 108-120 39-51 (228)
57 PRK14241 phosphate transporter 50.4 6.3 0.00014 30.2 0.4 14 108-121 33-46 (258)
58 cd01859 MJ1464 MJ1464. This f 50.3 5.8 0.00012 27.8 0.2 43 76-119 73-115 (156)
59 TIGR03796 NHPM_micro_ABC1 NHPM 50.2 6.3 0.00014 34.8 0.5 12 108-119 508-519 (710)
60 PLN03130 ABC transporter C fam 50.1 6.2 0.00013 39.5 0.5 12 108-119 1268-1279(1622)
61 cd03257 ABC_NikE_OppD_transpor 50.1 6.5 0.00014 29.0 0.4 13 108-120 34-46 (228)
62 cd03219 ABC_Mj1267_LivG_branch 49.9 6.6 0.00014 29.4 0.5 13 108-120 29-41 (236)
63 TIGR03410 urea_trans_UrtE urea 49.6 6.7 0.00015 29.3 0.5 13 108-120 29-41 (230)
64 cd03270 ABC_UvrA_I The excisio 49.6 6.7 0.00015 30.0 0.5 13 109-121 25-37 (226)
65 TIGR02746 TraC-F-type type-IV 49.5 5.1 0.00011 35.8 -0.2 16 108-123 433-448 (797)
66 PRK14245 phosphate ABC transpo 49.4 6.8 0.00015 29.8 0.5 13 109-121 33-45 (250)
67 TIGR02204 MsbA_rel ABC transpo 49.4 6.6 0.00014 33.4 0.5 12 108-119 369-380 (576)
68 TIGR03608 L_ocin_972_ABC putat 49.1 6.9 0.00015 28.5 0.5 13 108-120 27-39 (206)
69 cd03255 ABC_MJ0796_Lo1CDE_FtsE 48.9 7 0.00015 28.9 0.5 13 108-120 33-45 (218)
70 TIGR00957 MRP_assoc_pro multi 48.9 6.7 0.00014 38.8 0.5 26 90-119 1301-1326(1522)
71 cd03259 ABC_Carb_Solutes_like 48.9 7 0.00015 28.9 0.5 12 108-119 29-40 (213)
72 cd03258 ABC_MetN_methionine_tr 48.8 7 0.00015 29.2 0.5 13 108-120 34-46 (233)
73 cd03218 ABC_YhbG The ABC trans 48.6 7.1 0.00015 29.1 0.5 13 108-120 29-41 (232)
74 cd03231 ABC_CcmA_heme_exporter 48.5 7.2 0.00016 28.9 0.5 13 108-120 29-41 (201)
75 PRK10522 multidrug transporter 48.4 7 0.00015 33.6 0.4 12 108-119 352-363 (547)
76 COG1124 DppF ABC-type dipeptid 48.3 8.4 0.00018 32.6 0.9 12 108-119 36-47 (252)
77 cd03234 ABCG_White The White s 48.2 7.5 0.00016 29.2 0.5 12 108-119 36-47 (226)
78 cd03216 ABC_Carb_Monos_I This 48.2 7.3 0.00016 28.2 0.5 12 109-120 30-41 (163)
79 PRK10418 nikD nickel transport 48.0 7.3 0.00016 29.9 0.5 13 108-120 32-44 (254)
80 cd00879 Sar1 Sar1 subfamily. 48.0 7.4 0.00016 27.5 0.5 12 108-119 22-33 (190)
81 COG4988 CydD ABC-type transpor 47.8 7.3 0.00016 36.1 0.5 17 106-122 348-364 (559)
82 PRK14249 phosphate ABC transpo 47.8 7.4 0.00016 29.6 0.5 12 109-120 34-45 (251)
83 TIGR01271 CFTR_protein cystic 47.8 7.1 0.00015 38.6 0.5 12 108-119 1248-1259(1490)
84 PRK13652 cbiO cobalt transport 47.7 7.4 0.00016 30.5 0.5 13 109-121 34-46 (277)
85 cd01856 YlqF YlqF. Proteins o 47.4 8.7 0.00019 27.8 0.8 45 75-120 77-130 (171)
86 PRK10744 pstB phosphate transp 47.0 7.7 0.00017 29.9 0.4 12 109-120 43-54 (260)
87 TIGR02211 LolD_lipo_ex lipopro 47.0 7.8 0.00017 28.7 0.5 12 109-120 35-46 (221)
88 PRK00454 engB GTP-binding prot 46.9 8.2 0.00018 27.2 0.6 13 107-119 26-38 (196)
89 cd03301 ABC_MalK_N The N-termi 46.8 7.9 0.00017 28.5 0.5 13 108-120 29-41 (213)
90 cd03214 ABC_Iron-Siderophores_ 46.8 7.9 0.00017 28.2 0.5 12 109-120 29-40 (180)
91 TIGR02857 CydD thiol reductant 46.7 7.7 0.00017 32.8 0.5 12 108-119 351-362 (529)
92 cd03260 ABC_PstB_phosphate_tra 46.7 7.9 0.00017 28.9 0.5 13 108-120 29-41 (227)
93 PF02463 SMC_N: RecF/RecN/SMC 46.7 11 0.00025 27.8 1.3 32 91-122 7-41 (220)
94 PTZ00243 ABC transporter; Prov 46.7 7.6 0.00016 38.7 0.5 12 108-119 1339-1350(1560)
95 COG1136 SalX ABC-type antimicr 46.7 7.3 0.00016 31.8 0.3 15 110-124 36-50 (226)
96 cd03226 ABC_cobalt_CbiO_domain 46.5 8 0.00017 28.5 0.5 13 108-120 29-41 (205)
97 TIGR01978 sufC FeS assembly AT 46.5 8.3 0.00018 28.9 0.5 13 108-120 29-41 (243)
98 cd01363 Motor_domain Myosin an 46.5 9.4 0.0002 28.5 0.8 14 111-124 30-43 (186)
99 PRK13638 cbiO cobalt transport 46.5 8 0.00017 30.1 0.5 13 108-120 30-42 (271)
100 CHL00131 ycf16 sulfate ABC tra 46.3 8.1 0.00017 29.3 0.5 11 110-120 38-48 (252)
101 cd03247 ABCC_cytochrome_bd The 46.2 8.2 0.00018 28.0 0.5 13 108-120 31-43 (178)
102 PRK14250 phosphate ABC transpo 46.2 8.1 0.00018 29.4 0.5 13 108-120 32-44 (241)
103 PRK14251 phosphate ABC transpo 46.1 8.2 0.00018 29.3 0.5 13 108-120 33-45 (251)
104 PRK14269 phosphate ABC transpo 46.1 8.2 0.00018 29.4 0.5 13 108-120 31-43 (246)
105 PRK14261 phosphate ABC transpo 46.1 8.1 0.00018 29.5 0.4 14 109-122 36-49 (253)
106 cd01854 YjeQ_engC YjeQ/EngC. 46.0 8.1 0.00018 31.1 0.5 36 77-121 142-177 (287)
107 cd03296 ABC_CysA_sulfate_impor 45.9 8.2 0.00018 29.2 0.5 13 108-120 31-43 (239)
108 PRK12289 GTPase RsgA; Reviewed 45.9 8.4 0.00018 32.7 0.5 35 76-119 152-186 (352)
109 PRK13657 cyclic beta-1,2-gluca 45.8 8.1 0.00018 33.3 0.5 12 108-119 364-375 (588)
110 PRK15093 antimicrobial peptide 45.7 8.2 0.00018 31.5 0.4 13 108-120 36-48 (330)
111 cd03289 ABCC_CFTR2 The CFTR su 45.7 8.2 0.00018 31.0 0.4 13 108-120 33-45 (275)
112 PF10442 FIST_C: FIST C domain 45.7 7.4 0.00016 27.0 0.2 34 65-98 50-83 (136)
113 TIGR02315 ABC_phnC phosphonate 45.6 8.4 0.00018 28.9 0.5 13 108-120 31-43 (243)
114 PRK03846 adenylylsulfate kinas 45.6 8.4 0.00018 28.7 0.5 12 108-119 27-38 (198)
115 PRK13538 cytochrome c biogenes 45.5 8.4 0.00018 28.5 0.4 13 108-120 30-42 (204)
116 PRK15112 antimicrobial peptide 45.1 8.6 0.00019 29.9 0.4 13 108-120 42-54 (267)
117 PRK11231 fecE iron-dicitrate t 45.1 8.7 0.00019 29.4 0.5 13 108-120 31-43 (255)
118 PRK10575 iron-hydroxamate tran 45.0 8.7 0.00019 29.8 0.5 12 109-120 41-52 (265)
119 cd03249 ABC_MTABC3_MDL1_MDL2 M 45.0 9 0.00019 28.8 0.5 12 109-120 33-44 (238)
120 cd03217 ABC_FeS_Assembly ABC-t 44.9 8.8 0.00019 28.5 0.5 13 108-120 29-41 (200)
121 COG0218 Predicted GTPase [Gene 44.9 8.7 0.00019 31.3 0.5 12 108-119 27-38 (200)
122 PRK10908 cell division protein 44.8 8.8 0.00019 28.6 0.5 13 108-120 31-43 (222)
123 cd03254 ABCC_Glucan_exporter_l 44.8 12 0.00026 27.8 1.2 12 109-120 33-44 (229)
124 cd03230 ABC_DR_subfamily_A Thi 44.8 8.9 0.00019 27.8 0.5 13 108-120 29-41 (173)
125 PRK14239 phosphate transporter 44.7 8.8 0.00019 29.1 0.5 13 108-120 34-46 (252)
126 TIGR03864 PQQ_ABC_ATP ABC tran 44.7 8.9 0.00019 28.9 0.5 13 108-120 30-42 (236)
127 cd03300 ABC_PotA_N PotA is an 44.5 9 0.00019 28.9 0.5 12 108-119 29-40 (232)
128 PF13481 AAA_25: AAA domain; P 44.5 8.5 0.00018 27.5 0.3 14 109-122 36-49 (193)
129 TIGR02324 CP_lyasePhnL phospho 44.4 9 0.0002 28.5 0.5 13 108-120 37-49 (224)
130 cd03256 ABC_PhnC_transporter A 44.3 9.1 0.0002 28.6 0.5 13 108-120 30-42 (241)
131 TIGR03375 type_I_sec_LssB type 44.3 8.8 0.00019 33.9 0.5 12 108-119 494-505 (694)
132 PRK13900 type IV secretion sys 44.2 28 0.0006 29.2 3.3 91 23-122 57-177 (332)
133 PRK14260 phosphate ABC transpo 44.2 9.1 0.0002 29.5 0.5 13 108-120 36-48 (259)
134 PRK14248 phosphate ABC transpo 44.2 9 0.0002 29.6 0.4 13 108-120 50-62 (268)
135 cd00267 ABC_ATPase ABC (ATP-bi 44.2 9.3 0.0002 27.0 0.5 13 108-120 28-40 (157)
136 PRK11701 phnK phosphonate C-P 44.1 9.1 0.0002 29.4 0.5 12 109-120 36-47 (258)
137 PRK13541 cytochrome c biogenes 44.1 9.2 0.0002 28.1 0.5 12 109-120 30-41 (195)
138 cd03229 ABC_Class3 This class 44.0 9.3 0.0002 27.8 0.5 13 108-120 29-41 (178)
139 PRK11124 artP arginine transpo 44.0 9.2 0.0002 28.9 0.5 12 108-119 31-42 (242)
140 PRK10771 thiQ thiamine transpo 43.9 9.2 0.0002 28.8 0.5 13 108-120 28-40 (232)
141 PRK14242 phosphate transporter 43.8 9.3 0.0002 29.0 0.5 12 109-120 36-47 (253)
142 cd03298 ABC_ThiQ_thiamine_tran 43.8 11 0.00023 27.8 0.8 13 108-120 27-39 (211)
143 PRK10261 glutathione transport 43.7 18 0.00039 32.1 2.3 13 109-121 46-58 (623)
144 PRK14240 phosphate transporter 43.7 9.4 0.0002 29.0 0.5 15 108-122 32-46 (250)
145 TIGR00968 3a0106s01 sulfate AB 43.5 9.5 0.00021 29.0 0.5 13 108-120 29-41 (237)
146 cd01372 KISc_KIF4 Kinesin moto 43.4 12 0.00026 30.3 1.1 14 111-124 80-93 (341)
147 cd01849 YlqF_related_GTPase Yl 43.4 11 0.00024 26.7 0.8 46 76-122 62-117 (155)
148 cd03290 ABCC_SUR1_N The SUR do 43.4 11 0.00024 28.0 0.8 14 108-121 30-43 (218)
149 PRK13645 cbiO cobalt transport 43.4 9.5 0.00021 30.0 0.5 13 108-120 40-52 (289)
150 PRK10253 iron-enterobactin tra 43.4 9.5 0.00021 29.6 0.5 12 109-120 37-48 (265)
151 cd03238 ABC_UvrA The excision 43.3 9.6 0.00021 28.9 0.5 13 109-121 25-37 (176)
152 PRK11629 lolD lipoprotein tran 43.3 9.6 0.00021 28.7 0.5 12 109-120 39-50 (233)
153 PRK13639 cbiO cobalt transport 43.2 9.5 0.00021 29.9 0.5 14 108-121 31-44 (275)
154 cd03215 ABC_Carb_Monos_II This 43.2 9.7 0.00021 27.8 0.5 12 108-119 29-40 (182)
155 cd00844 MPP_Dbr1_N Dbr1 RNA la 43.2 50 0.0011 26.9 4.6 46 78-123 77-131 (262)
156 PRK09473 oppD oligopeptide tra 43.2 8.5 0.00018 31.6 0.2 14 108-121 45-58 (330)
157 PRK10895 lipopolysaccharide AB 43.1 9.7 0.00021 28.7 0.5 13 108-120 32-44 (241)
158 TIGR03005 ectoine_ehuA ectoine 43.0 9.7 0.00021 29.0 0.5 13 108-120 29-41 (252)
159 PRK10619 histidine/lysine/argi 43.0 9.8 0.00021 29.2 0.5 12 109-120 35-46 (257)
160 PRK14267 phosphate ABC transpo 42.8 9.8 0.00021 28.9 0.4 12 109-120 34-45 (253)
161 PRK13647 cbiO cobalt transport 42.8 9.5 0.00021 30.0 0.4 14 108-121 34-47 (274)
162 COG3839 MalK ABC-type sugar tr 42.7 9.9 0.00021 32.7 0.5 16 108-123 32-47 (338)
163 PRK13646 cbiO cobalt transport 42.7 9.8 0.00021 30.1 0.5 14 108-121 36-49 (286)
164 PF13476 AAA_23: AAA domain; P 42.7 11 0.00023 26.3 0.5 13 110-122 24-36 (202)
165 cd03297 ABC_ModC_molybdenum_tr 42.6 9.9 0.00022 28.2 0.4 12 108-119 26-37 (214)
166 PRK14273 phosphate ABC transpo 42.6 9.9 0.00022 29.0 0.5 13 108-120 36-48 (254)
167 COG1125 OpuBA ABC-type proline 42.6 7.9 0.00017 33.9 -0.1 16 108-123 30-45 (309)
168 TIGR01189 ccmA heme ABC export 42.5 10 0.00022 27.9 0.5 13 108-120 29-41 (198)
169 PRK13632 cbiO cobalt transport 42.5 10 0.00022 29.6 0.5 12 109-120 39-50 (271)
170 cd03221 ABCF_EF-3 ABCF_EF-3 E 42.2 10 0.00022 27.1 0.5 13 108-120 29-41 (144)
171 cd00009 AAA The AAA+ (ATPases 42.1 11 0.00024 23.8 0.5 16 107-122 21-36 (151)
172 PRK09493 glnQ glutamine ABC tr 42.1 10 0.00022 28.6 0.5 13 108-120 30-42 (240)
173 PRK13547 hmuV hemin importer A 42.0 10 0.00022 30.1 0.4 14 108-121 30-43 (272)
174 TIGR03411 urea_trans_UrtD urea 41.9 10 0.00022 28.5 0.5 13 108-120 31-43 (242)
175 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 41.8 10 0.00023 28.7 0.5 12 109-120 52-63 (224)
176 PRK11022 dppD dipeptide transp 41.7 9.8 0.00021 31.2 0.3 14 108-121 36-49 (326)
177 PRK13543 cytochrome c biogenes 41.6 11 0.00023 28.3 0.5 12 109-120 41-52 (214)
178 TIGR02769 nickel_nikE nickel i 41.5 11 0.00023 29.3 0.5 13 108-120 40-52 (265)
179 PF00988 CPSase_sm_chain: Carb 41.5 6.1 0.00013 30.2 -0.8 24 48-71 85-111 (131)
180 PRK13548 hmuV hemin importer A 41.4 11 0.00023 29.3 0.5 13 108-120 31-43 (258)
181 PRK09580 sufC cysteine desulfu 41.3 11 0.00023 28.4 0.5 13 108-120 30-42 (248)
182 cd01371 KISc_KIF3 Kinesin moto 41.2 13 0.00029 30.3 1.0 15 111-125 88-102 (333)
183 TIGR03719 ABC_ABC_ChvD ATP-bin 41.1 11 0.00024 32.6 0.5 12 109-120 35-46 (552)
184 TIGR02203 MsbA_lipidA lipid A 41.1 10 0.00022 32.2 0.3 10 110-119 363-372 (571)
185 PRK14262 phosphate ABC transpo 41.1 11 0.00024 28.6 0.5 13 109-121 33-45 (250)
186 PRK14255 phosphate ABC transpo 40.9 11 0.00024 28.6 0.5 13 108-120 34-46 (252)
187 PLN03073 ABC transporter F fam 40.9 11 0.00024 34.8 0.5 15 109-123 207-221 (718)
188 PRK14270 phosphate ABC transpo 40.9 11 0.00024 28.7 0.5 13 108-120 33-45 (251)
189 PRK14247 phosphate ABC transpo 40.8 11 0.00024 28.6 0.5 13 108-120 32-44 (250)
190 cd01376 KISc_KID_like Kinesin 40.8 14 0.0003 30.0 1.1 14 111-124 87-100 (319)
191 cd03240 ABC_Rad50 The catalyti 40.7 19 0.00041 27.3 1.7 16 109-124 26-41 (204)
192 PRK11300 livG leucine/isoleuci 40.6 11 0.00024 28.6 0.5 12 109-120 35-46 (255)
193 PRK11264 putative amino-acid A 40.5 11 0.00024 28.5 0.5 13 108-120 32-44 (250)
194 cd03222 ABC_RNaseL_inhibitor T 40.5 10 0.00022 28.8 0.2 13 108-120 28-40 (177)
195 PRK13540 cytochrome c biogenes 40.5 11 0.00024 27.8 0.5 12 109-120 31-42 (200)
196 TIGR00958 3a01208 Conjugate Tr 40.5 11 0.00024 33.8 0.5 11 109-119 511-521 (711)
197 PRK11831 putative ABC transpor 40.4 11 0.00024 29.3 0.5 12 109-120 37-48 (269)
198 PF01580 FtsK_SpoIIIE: FtsK/Sp 40.1 7.9 0.00017 28.5 -0.4 16 108-123 41-56 (205)
199 cd03248 ABCC_TAP TAP, the Tran 40.0 12 0.00025 27.9 0.5 13 108-120 43-55 (226)
200 TIGR00929 VirB4_CagE type IV s 40.0 8.6 0.00019 34.0 -0.3 16 108-123 437-452 (785)
201 PRK14252 phosphate ABC transpo 39.9 12 0.00025 29.0 0.5 12 109-120 46-57 (265)
202 cd03275 ABC_SMC1_euk Eukaryoti 39.9 12 0.00026 28.8 0.6 18 109-126 26-43 (247)
203 cd03271 ABC_UvrA_II The excisi 39.9 12 0.00027 30.3 0.6 11 110-120 26-36 (261)
204 cd01364 KISc_BimC_Eg5 Kinesin 39.9 15 0.00032 30.1 1.1 21 105-125 81-102 (352)
205 TIGR00972 3a0107s01c2 phosphat 39.8 12 0.00025 28.5 0.4 13 108-120 30-42 (247)
206 PRK13649 cbiO cobalt transport 39.8 12 0.00025 29.2 0.5 12 109-120 37-48 (280)
207 PRK11247 ssuB aliphatic sulfon 39.8 12 0.00025 29.5 0.5 13 108-120 41-53 (257)
208 PRK09984 phosphonate/organopho 39.7 12 0.00025 28.9 0.4 13 108-120 33-45 (262)
209 PRK13636 cbiO cobalt transport 39.6 12 0.00025 29.6 0.4 13 108-120 35-47 (283)
210 PRK13633 cobalt transporter AT 39.5 12 0.00026 29.5 0.5 13 108-120 39-51 (280)
211 PRK10247 putative ABC transpor 39.4 12 0.00026 28.2 0.5 12 109-120 37-48 (225)
212 COG1123 ATPase components of v 39.3 11 0.00024 34.6 0.3 15 108-122 38-52 (539)
213 PRK13637 cbiO cobalt transport 39.2 12 0.00025 29.7 0.4 13 109-121 37-49 (287)
214 cd03299 ABC_ModC_like Archeal 39.2 12 0.00026 28.4 0.5 13 108-120 28-40 (235)
215 PF13191 AAA_16: AAA ATPase do 39.1 11 0.00025 26.1 0.3 17 106-122 25-41 (185)
216 cd01878 HflX HflX subfamily. 39.1 12 0.00027 27.0 0.5 12 108-119 44-55 (204)
217 PRK11248 tauB taurine transpor 39.0 12 0.00026 29.1 0.4 13 108-120 30-42 (255)
218 PRK14256 phosphate ABC transpo 39.0 12 0.00026 28.5 0.4 12 108-119 33-44 (252)
219 PRK14268 phosphate ABC transpo 38.9 12 0.00027 28.7 0.5 12 109-120 42-53 (258)
220 TIGR01288 nodI ATP-binding ABC 38.8 12 0.00027 29.8 0.5 14 108-121 33-46 (303)
221 cd03223 ABCD_peroxisomal_ALDP 38.7 13 0.00027 27.1 0.5 13 108-120 30-42 (166)
222 PRK15079 oligopeptide ABC tran 38.7 12 0.00026 30.8 0.4 14 108-121 50-63 (331)
223 PRK14244 phosphate ABC transpo 38.6 13 0.00027 28.4 0.5 11 110-120 36-46 (251)
224 cd03233 ABC_PDR_domain1 The pl 38.4 13 0.00027 27.8 0.4 12 109-120 37-48 (202)
225 PRK14265 phosphate ABC transpo 38.2 13 0.00028 29.3 0.5 14 108-121 49-62 (274)
226 PRK11308 dppF dipeptide transp 38.2 12 0.00027 30.6 0.4 13 109-121 45-57 (327)
227 cd03244 ABCC_MRP_domain2 Domai 38.2 13 0.00028 27.5 0.5 12 109-120 34-45 (221)
228 TIGR02982 heterocyst_DevA ABC 38.2 13 0.00028 27.8 0.5 13 108-120 34-46 (220)
229 cd03295 ABC_OpuCA_Osmoprotecti 38.1 13 0.00028 28.2 0.5 13 108-120 30-42 (242)
230 PRK09544 znuC high-affinity zi 38.0 13 0.00028 29.0 0.5 13 108-120 33-45 (251)
231 cd03276 ABC_SMC6_euk Eukaryoti 38.0 22 0.00048 26.9 1.7 16 109-124 25-40 (198)
232 TIGR02314 ABC_MetN D-methionin 37.9 13 0.00028 31.2 0.4 13 108-120 34-46 (343)
233 PRK15134 microcin C ABC transp 37.8 13 0.00028 31.9 0.4 12 109-120 39-50 (529)
234 cd01374 KISc_CENP_E Kinesin mo 37.7 16 0.00034 29.6 0.9 14 111-124 80-93 (321)
235 PRK14272 phosphate ABC transpo 37.7 13 0.00029 28.1 0.5 12 109-120 34-45 (252)
236 PRK15056 manganese/iron transp 37.5 13 0.00029 29.0 0.4 12 109-120 37-48 (272)
237 TIGR03740 galliderm_ABC gallid 37.4 13 0.00029 27.6 0.5 13 108-120 29-41 (223)
238 PRK13650 cbiO cobalt transport 37.4 13 0.00029 29.2 0.5 13 109-121 37-49 (279)
239 PRK14235 phosphate transporter 37.3 13 0.00029 28.8 0.5 12 109-120 49-60 (267)
240 PRK14237 phosphate transporter 37.2 14 0.00029 28.8 0.5 12 108-119 49-60 (267)
241 PRK14259 phosphate ABC transpo 37.0 14 0.0003 28.9 0.4 13 109-121 43-55 (269)
242 cd03237 ABC_RNaseL_inhibitor_d 36.9 14 0.0003 29.0 0.5 12 109-120 29-40 (246)
243 cd03268 ABC_BcrA_bacitracin_re 36.9 14 0.0003 27.2 0.5 13 108-120 29-41 (208)
244 PRK10789 putative multidrug tr 36.9 14 0.00029 32.1 0.5 13 108-120 344-356 (569)
245 PRK11153 metN DL-methionine tr 36.9 13 0.00029 30.5 0.4 12 109-120 35-46 (343)
246 PRK14266 phosphate ABC transpo 36.8 14 0.0003 28.0 0.5 12 109-120 33-44 (250)
247 PRK13643 cbiO cobalt transport 36.8 13 0.00029 29.5 0.3 12 109-120 36-47 (288)
248 cd01365 KISc_KIF1A_KIF1B Kines 36.8 17 0.00037 29.9 1.0 14 111-124 95-108 (356)
249 TIGR03597 GTPase_YqeH ribosome 36.8 15 0.00032 30.7 0.6 39 76-119 130-168 (360)
250 PRK09270 nucleoside triphospha 36.7 14 0.0003 28.2 0.5 13 108-120 36-48 (229)
251 TIGR01277 thiQ thiamine ABC tr 36.7 14 0.0003 27.4 0.5 12 108-119 27-38 (213)
252 TIGR01846 type_I_sec_HlyB type 36.7 14 0.0003 32.8 0.5 12 108-119 486-497 (694)
253 cd03232 ABC_PDR_domain2 The pl 36.5 15 0.00032 27.1 0.5 13 109-121 37-49 (192)
254 cd03236 ABC_RNaseL_inhibitor_d 36.5 14 0.00031 29.2 0.5 13 108-120 29-41 (255)
255 PRK13641 cbiO cobalt transport 36.5 14 0.0003 29.2 0.4 14 109-122 37-50 (287)
256 cd03245 ABCC_bacteriocin_expor 36.4 14 0.00031 27.3 0.5 14 108-121 33-46 (220)
257 PRK11160 cysteine/glutathione 36.4 14 0.0003 32.1 0.5 11 109-119 370-380 (574)
258 TIGR01192 chvA glucan exporter 36.2 14 0.0003 32.3 0.4 11 109-119 365-375 (585)
259 PRK11614 livF leucine/isoleuci 36.1 15 0.00031 27.7 0.5 12 109-120 35-46 (237)
260 COG1131 CcmA ABC-type multidru 36.1 14 0.00031 29.9 0.4 14 109-122 35-48 (293)
261 TIGR02695 azurin azurin. Azuri 36.0 16 0.00036 28.0 0.7 13 42-55 106-118 (125)
262 PRK13648 cbiO cobalt transport 36.0 15 0.00031 28.6 0.5 12 109-120 39-50 (269)
263 cd01369 KISc_KHC_KIF5 Kinesin 35.8 18 0.00039 29.2 1.0 15 111-125 83-97 (325)
264 cd03250 ABCC_MRP_domain1 Domai 35.7 15 0.00033 27.0 0.5 14 108-121 34-47 (204)
265 PRK14274 phosphate ABC transpo 35.7 15 0.00032 28.2 0.4 12 109-120 42-53 (259)
266 PRK03695 vitamin B12-transport 35.7 15 0.00032 28.3 0.5 13 108-120 25-37 (248)
267 TIGR01842 type_I_sec_PrtD type 35.6 15 0.00032 31.5 0.5 12 108-119 347-358 (544)
268 CHL00197 carA carbamoyl-phosph 35.3 10 0.00022 33.0 -0.6 24 48-71 89-115 (382)
269 PRK13644 cbiO cobalt transport 35.1 15 0.00033 28.8 0.5 14 108-121 31-44 (274)
270 TIGR03265 PhnT2 putative 2-ami 35.0 15 0.00033 30.6 0.4 16 108-123 33-48 (353)
271 COG0488 Uup ATPase components 34.9 15 0.00033 33.1 0.4 17 108-124 32-48 (530)
272 PRK09087 hypothetical protein; 34.8 16 0.00034 28.6 0.5 17 106-122 44-61 (226)
273 PRK13642 cbiO cobalt transport 34.7 18 0.00038 28.5 0.7 14 108-121 36-49 (277)
274 PRK15064 ABC transporter ATP-b 34.7 16 0.00035 31.3 0.5 13 108-120 30-42 (530)
275 cd03252 ABCC_Hemolysin The ABC 34.6 16 0.00034 27.4 0.4 13 108-120 31-43 (237)
276 PRK11000 maltose/maltodextrin 34.6 15 0.00033 30.6 0.4 15 108-122 32-46 (369)
277 cd03246 ABCC_Protease_Secretio 34.3 16 0.00035 26.4 0.5 13 108-120 31-43 (173)
278 TIGR03015 pepcterm_ATPase puta 34.2 12 0.00026 28.2 -0.3 15 108-122 46-60 (269)
279 PRK13833 conjugal transfer pro 34.2 69 0.0015 27.1 4.2 88 23-122 63-161 (323)
280 TIGR03873 F420-0_ABC_ATP propo 34.2 16 0.00035 28.0 0.5 13 108-120 30-42 (256)
281 cd02019 NK Nucleoside/nucleoti 34.1 17 0.00037 23.1 0.5 11 110-120 4-14 (69)
282 cd01855 YqeH YqeH. YqeH is an 34.0 20 0.00043 26.1 0.9 41 75-119 101-141 (190)
283 smart00129 KISc Kinesin motor, 33.9 22 0.00048 28.6 1.2 14 111-124 86-99 (335)
284 PRK13546 teichoic acids export 33.9 16 0.00036 28.9 0.5 12 109-120 54-65 (264)
285 TIGR01188 drrA daunorubicin re 33.8 16 0.00036 29.0 0.5 15 108-122 22-36 (302)
286 TIGR00991 3a0901s02IAP34 GTP-b 33.8 16 0.00035 31.3 0.4 12 110-121 43-54 (313)
287 cd07386 MPP_DNA_pol_II_small_a 33.8 67 0.0015 24.6 3.8 49 69-117 76-139 (243)
288 PRK11819 putative ABC transpor 33.8 17 0.00036 31.6 0.5 12 109-120 37-48 (556)
289 cd03288 ABCC_SUR2 The SUR doma 33.7 17 0.00036 28.1 0.4 11 110-120 52-62 (257)
290 TIGR03744 traC_PFL_4706 conjug 33.6 13 0.00027 35.0 -0.3 38 20-57 377-418 (893)
291 PRK10419 nikE nickel transport 33.6 17 0.00036 28.4 0.5 13 108-120 41-53 (268)
292 PRK14264 phosphate ABC transpo 33.5 17 0.00036 29.2 0.5 12 110-121 76-87 (305)
293 PRK14258 phosphate ABC transpo 33.4 17 0.00036 28.1 0.4 13 108-120 36-48 (261)
294 cd01367 KISc_KIF2_like Kinesin 33.2 22 0.00047 29.1 1.0 14 111-124 91-104 (322)
295 PRK13634 cbiO cobalt transport 33.2 17 0.00036 28.9 0.4 13 108-120 36-48 (290)
296 PRK13651 cobalt transporter AT 33.0 17 0.00037 29.5 0.4 13 108-120 36-48 (305)
297 cd03267 ABC_NatA_like Similar 33.0 17 0.00038 27.6 0.5 12 110-121 52-63 (236)
298 cd01370 KISc_KIP3_like Kinesin 33.0 22 0.00047 29.3 1.0 14 111-124 94-107 (338)
299 cd03253 ABCC_ATM1_transporter 32.9 17 0.00038 27.1 0.4 12 108-119 30-41 (236)
300 COG1484 DnaC DNA replication p 32.9 18 0.00039 29.0 0.6 22 104-125 104-125 (254)
301 TIGR01368 CPSaseIIsmall carbam 32.8 12 0.00026 32.2 -0.5 24 48-71 83-109 (358)
302 PRK14236 phosphate transporter 32.7 18 0.00038 28.3 0.4 12 109-120 55-66 (272)
303 PRK14253 phosphate ABC transpo 32.6 18 0.00039 27.5 0.4 13 109-121 33-45 (249)
304 COG4172 ABC-type uncharacteriz 32.6 23 0.0005 33.0 1.2 13 107-119 315-327 (534)
305 PTZ00265 multidrug resistance 32.6 17 0.00037 36.2 0.4 11 109-119 1198-1208(1466)
306 cd03239 ABC_SMC_head The struc 32.6 19 0.00041 27.0 0.6 17 110-126 27-43 (178)
307 PRK14254 phosphate ABC transpo 32.5 18 0.00038 28.8 0.4 11 110-120 70-80 (285)
308 PRK13631 cbiO cobalt transport 32.4 18 0.00039 29.6 0.5 13 108-120 55-67 (320)
309 cd01368 KISc_KIF23_like Kinesi 32.4 23 0.00049 29.4 1.1 14 111-124 95-108 (345)
310 PRK14243 phosphate transporter 32.3 18 0.00039 28.1 0.5 13 108-120 39-51 (264)
311 PRK10938 putative molybdenum t 32.3 18 0.00039 30.5 0.4 12 109-120 33-44 (490)
312 cd03294 ABC_Pro_Gly_Bertaine T 32.3 18 0.00039 28.2 0.5 12 109-120 54-65 (269)
313 TIGR01186 proV glycine betaine 32.2 17 0.00037 30.8 0.3 14 109-122 23-36 (363)
314 PRK13721 conjugal transfer ATP 32.2 14 0.00031 34.2 -0.2 16 108-123 452-467 (844)
315 PRK12838 carbamoyl phosphate s 32.1 9.5 0.00021 32.7 -1.2 48 47-94 84-145 (354)
316 PF06309 Torsin: Torsin; Inte 32.0 19 0.00042 27.3 0.5 15 108-122 56-70 (127)
317 PRK13635 cbiO cobalt transport 32.0 18 0.00039 28.6 0.4 14 109-122 37-50 (279)
318 PRK13159 cytochrome c-type bio 31.7 65 0.0014 25.4 3.4 32 57-88 91-128 (155)
319 PRK13549 xylose transporter AT 31.3 19 0.00041 30.7 0.5 12 109-120 35-46 (506)
320 PRK10982 galactose/methyl gala 31.2 19 0.00041 30.4 0.4 13 108-120 27-39 (491)
321 COG1117 PstB ABC-type phosphat 31.1 20 0.00043 30.7 0.5 12 109-120 37-48 (253)
322 cd03291 ABCC_CFTR1 The CFTR su 31.0 19 0.00042 29.0 0.4 13 108-120 66-78 (282)
323 PRK14271 phosphate ABC transpo 31.0 20 0.00043 28.3 0.5 11 110-120 52-62 (276)
324 PRK14275 phosphate ABC transpo 30.8 20 0.00043 28.4 0.5 11 110-120 70-80 (286)
325 cd03251 ABCC_MsbA MsbA is an e 30.8 20 0.00044 26.7 0.5 13 108-120 31-43 (234)
326 TIGR02633 xylG D-xylose ABC tr 30.8 20 0.00043 30.3 0.5 13 108-120 30-42 (500)
327 PRK10851 sulfate/thiosulfate t 30.7 20 0.00043 29.9 0.5 15 108-122 31-45 (353)
328 COG0444 DppD ABC-type dipeptid 30.6 22 0.00048 30.8 0.8 15 107-121 33-47 (316)
329 PRK11650 ugpC glycerol-3-phosp 30.5 20 0.00043 30.0 0.4 16 108-123 33-48 (356)
330 PRK09700 D-allose transporter 30.3 20 0.00044 30.4 0.5 12 110-121 36-47 (510)
331 cd01130 VirB11-like_ATPase Typ 30.3 21 0.00045 26.4 0.4 14 108-121 28-41 (186)
332 PRK11144 modC molybdate transp 30.3 20 0.00044 29.6 0.5 13 108-120 27-39 (352)
333 PRK11432 fbpC ferric transport 30.1 20 0.00044 29.9 0.4 15 108-122 35-49 (351)
334 COG1162 Predicted GTPases [Gen 29.9 20 0.00044 30.7 0.4 11 109-119 168-178 (301)
335 COG4608 AppF ABC-type oligopep 29.9 18 0.00039 30.6 0.1 14 108-121 42-55 (268)
336 PRK14263 phosphate ABC transpo 29.9 24 0.00052 27.5 0.8 13 108-120 37-49 (261)
337 PRK13640 cbiO cobalt transport 29.9 21 0.00045 28.2 0.4 12 109-120 37-48 (282)
338 cd01366 KISc_C_terminal Kinesi 29.7 26 0.00057 28.2 1.0 15 111-125 84-98 (329)
339 cd01373 KISc_KLP2_like Kinesin 29.5 27 0.00058 28.8 1.0 15 111-125 81-95 (337)
340 PF01695 IstB_IS21: IstB-like 29.5 23 0.00051 26.7 0.6 16 106-121 48-63 (178)
341 TIGR01194 cyc_pep_trnsptr cycl 29.5 21 0.00046 30.9 0.5 12 108-119 371-382 (555)
342 cd00106 KISc Kinesin motor dom 29.4 29 0.00063 27.7 1.2 14 111-124 85-98 (328)
343 PRK13873 conjugal transfer ATP 29.0 16 0.00035 33.6 -0.4 38 21-58 349-388 (811)
344 TIGR02142 modC_ABC molybdenum 29.0 22 0.00048 29.3 0.5 12 109-120 27-38 (354)
345 TIGR03258 PhnT 2-aminoethylpho 28.8 22 0.00048 29.9 0.4 15 108-122 34-48 (362)
346 PRK11147 ABC transporter ATPas 28.7 22 0.00049 31.5 0.5 13 108-120 32-44 (635)
347 cd01375 KISc_KIF9_like Kinesin 28.5 27 0.0006 28.6 0.9 15 111-125 87-101 (334)
348 TIGR03269 met_CoM_red_A2 methy 28.5 23 0.00049 30.2 0.5 11 110-120 315-325 (520)
349 PRK13537 nodulation ABC transp 28.5 23 0.0005 28.6 0.5 15 108-122 36-50 (306)
350 PRK10636 putative ABC transpor 28.4 23 0.00051 31.7 0.5 13 108-120 30-42 (638)
351 TIGR03783 Bac_Flav_CT_G Bacter 28.3 49 0.0011 31.4 2.6 66 42-122 390-455 (829)
352 cd03213 ABCG_EPDR ABCG transpo 28.3 24 0.00053 26.1 0.5 13 108-120 38-50 (194)
353 KOG0057|consensus 28.2 24 0.00051 33.3 0.5 26 71-119 367-392 (591)
354 PRK06526 transposase; Provisio 27.9 25 0.00053 28.3 0.5 19 105-123 98-116 (254)
355 PRK15439 autoinducer 2 ABC tra 27.9 24 0.00051 30.3 0.5 12 109-120 41-52 (510)
356 TIGR03420 DnaA_homol_Hda DnaA 27.9 23 0.00049 26.0 0.3 34 84-122 22-55 (226)
357 cd03241 ABC_RecN RecN ATPase i 27.8 9.3 0.0002 30.1 -1.9 18 109-126 25-42 (276)
358 COG3168 PilP Tfp pilus assembl 27.7 57 0.0012 26.6 2.6 24 59-83 104-127 (170)
359 KOG0964|consensus 27.7 19 0.00042 36.3 -0.1 19 110-128 30-48 (1200)
360 PLN02771 carbamoyl-phosphate s 27.5 14 0.00031 32.8 -0.9 24 48-71 139-165 (415)
361 cd03369 ABCC_NFT1 Domain 2 of 27.3 29 0.00062 25.6 0.8 13 108-120 37-49 (207)
362 PRK10762 D-ribose transporter 27.3 25 0.00053 30.0 0.5 13 109-121 34-46 (501)
363 TIGR03415 ABC_choXWV_ATP choli 27.0 24 0.00053 30.2 0.4 13 108-120 53-65 (382)
364 cd08898 SRPBCC_CalC_Aha1-like_ 26.8 1.4E+02 0.003 19.9 3.9 20 63-82 92-111 (145)
365 cd03228 ABCC_MRP_Like The MRP 26.7 26 0.00057 25.2 0.5 12 108-119 31-42 (171)
366 PHA00520 packaging NTPase P4 26.4 27 0.00059 30.9 0.6 48 82-129 238-289 (330)
367 PRK06696 uridine kinase; Valid 26.4 24 0.00051 26.8 0.2 10 110-119 27-36 (223)
368 PRK06921 hypothetical protein; 26.2 27 0.00058 28.1 0.5 20 105-124 117-136 (266)
369 TIGR03238 dnd_assoc_3 dnd syst 26.1 26 0.00057 32.2 0.5 14 110-123 37-50 (504)
370 PRK13536 nodulation factor exp 26.0 27 0.00058 29.0 0.5 14 109-122 71-84 (340)
371 COG1122 CbiO ABC-type cobalt t 25.9 27 0.00059 28.1 0.5 11 109-119 34-44 (235)
372 PRK01889 GTPase RsgA; Reviewed 25.9 26 0.00057 29.3 0.4 16 107-122 197-212 (356)
373 TIGR00296 uncharacterized prot 25.7 24 0.00052 28.2 0.1 36 72-111 43-90 (200)
374 PRK08181 transposase; Validate 25.5 28 0.00061 28.4 0.5 18 105-122 106-123 (269)
375 PRK13796 GTPase YqeH; Provisio 25.1 36 0.00078 28.6 1.1 39 76-119 136-174 (365)
376 COG3842 PotA ABC-type spermidi 25.0 33 0.00071 29.8 0.8 16 108-123 34-49 (352)
377 PRK09452 potA putrescine/sperm 24.6 29 0.00063 29.4 0.4 15 108-122 43-57 (375)
378 TIGR03881 KaiC_arch_4 KaiC dom 24.6 32 0.0007 25.6 0.6 10 110-119 25-34 (229)
379 PRK11288 araG L-arabinose tran 24.2 30 0.00065 29.4 0.4 13 108-120 33-45 (501)
380 PRK10070 glycine betaine trans 24.2 28 0.0006 30.0 0.2 13 109-121 58-70 (400)
381 TIGR02782 TrbB_P P-type conjug 24.0 1.7E+02 0.0038 24.0 4.8 89 23-122 51-149 (299)
382 PRK08939 primosomal protein Dn 23.9 32 0.00069 28.4 0.5 18 106-123 157-174 (306)
383 PF13175 AAA_15: AAA ATPase do 23.9 33 0.00071 27.0 0.6 22 102-123 17-40 (415)
384 cd01123 Rad51_DMC1_radA Rad51_ 23.9 33 0.0007 25.5 0.5 12 109-120 23-34 (235)
385 COG1493 HprK Serine kinase of 23.4 34 0.00074 29.8 0.6 11 109-119 149-159 (308)
386 cd03242 ABC_RecF RecF is a rec 23.2 34 0.00073 26.9 0.5 15 110-124 26-40 (270)
387 TIGR03819 heli_sec_ATPase heli 23.2 69 0.0015 26.9 2.4 87 25-122 99-195 (340)
388 PF13148 DUF3987: Protein of u 23.0 40 0.00087 26.9 0.9 13 110-122 44-56 (378)
389 PRK09183 transposase/IS protei 22.9 37 0.00081 27.0 0.7 17 106-122 103-119 (259)
390 PF01293 PEPCK_ATP: Phosphoeno 22.9 25 0.00053 31.6 -0.3 79 41-125 134-229 (466)
391 PF00063 Myosin_head: Myosin h 22.9 28 0.00061 31.2 0.0 34 20-53 10-44 (689)
392 TIGR00635 ruvB Holliday juncti 22.8 12 0.00027 29.0 -2.0 32 90-121 15-46 (305)
393 COG4172 ABC-type uncharacteriz 22.7 39 0.00084 31.6 0.8 20 102-121 33-52 (534)
394 KOG0054|consensus 22.2 33 0.00071 35.0 0.3 57 44-119 1124-1180(1381)
395 TIGR02168 SMC_prok_B chromosom 22.1 26 0.00057 31.4 -0.3 17 109-125 27-43 (1179)
396 PF10236 DAP3: Mitochondrial r 22.1 28 0.0006 28.6 -0.2 18 106-123 22-41 (309)
397 cd01393 recA_like RecA is a b 21.9 41 0.00089 24.8 0.7 11 110-120 24-34 (226)
398 PRK11607 potG putrescine trans 21.7 36 0.00078 28.8 0.4 15 109-123 49-63 (377)
399 cd03580 NTR_Sfrp1_like NTR dom 21.7 1.3E+02 0.0028 22.0 3.3 44 34-78 56-101 (126)
400 TIGR03499 FlhF flagellar biosy 21.6 29 0.00062 28.0 -0.2 17 107-123 196-212 (282)
401 PHA03260 Capsid triplex subuni 21.5 49 0.0011 29.4 1.2 47 49-95 7-72 (339)
402 PRK14246 phosphate ABC transpo 21.5 37 0.0008 26.4 0.4 15 108-122 39-53 (257)
403 PRK08903 DnaA regulatory inact 21.4 22 0.00048 26.6 -0.8 37 82-122 23-59 (227)
404 cd03283 ABC_MutS-like MutS-lik 21.3 41 0.00089 25.6 0.6 12 109-120 29-40 (199)
405 COG1123 ATPase components of v 21.1 43 0.00094 30.9 0.8 13 108-120 320-332 (539)
406 PRK08727 hypothetical protein; 21.1 45 0.00098 25.8 0.8 19 104-122 40-58 (233)
407 PRK06835 DNA replication prote 21.1 35 0.00075 28.7 0.2 19 105-123 183-201 (329)
408 PRK05428 HPr kinase/phosphoryl 20.9 40 0.00087 28.9 0.5 12 108-119 149-160 (308)
409 PRK06893 DNA replication initi 20.7 41 0.00089 25.9 0.5 19 104-122 37-56 (229)
410 PRK00149 dnaA chromosomal repl 20.6 31 0.00066 29.3 -0.2 24 100-123 143-166 (450)
411 PF06399 GFRP: GTP cyclohydrol 20.6 1E+02 0.0022 22.6 2.5 25 56-80 57-81 (83)
412 PF03120 DNA_ligase_OB: NAD-de 20.5 63 0.0014 22.9 1.4 16 101-116 1-17 (82)
413 cd01882 BMS1 Bms1. Bms1 is an 20.5 41 0.00088 25.9 0.5 13 108-120 42-54 (225)
414 PRK14721 flhF flagellar biosyn 20.4 41 0.0009 29.6 0.5 16 108-123 194-209 (420)
415 cd07814 SRPBCC_CalC_Aha1-like 20.3 2E+02 0.0044 18.7 3.8 19 64-82 89-107 (139)
416 PF05291 Bystin: Bystin; Inte 20.3 47 0.001 28.9 0.8 17 50-67 58-74 (301)
No 1
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=100.00 E-value=8.8e-73 Score=429.90 Aligned_cols=104 Identities=73% Similarity=1.138 Sum_probs=92.9
Q ss_pred hhHHHHHhhcCCCCccccCCCceEeecCCCccccCCCCCcceEEEEeeeCCCCeEEEEeecCCCccccccccceeeeccc
Q psy17338 22 ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQ 101 (130)
Q Consensus 22 er~l~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaLg~V~DGT~Vtv~AGNDEn~~aELRN~~avmknq 101 (130)
||+|.|+|+|||||||+|+||+|+||+||+|||||||||.+|||||||+|||||+|||+|||||||||||||++|+||||
T Consensus 1 er~~~~~l~~~~~~lv~T~sP~~lcs~LP~HWR~NKsLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aElRN~tavmknq 80 (135)
T PF00853_consen 1 ERTLHEALAEHPGELVRTDSPNFLCSVLPSHWRSNKSLPVAFKVVALGDVPDGTLVTVMAGNDENYCAELRNATAVMKNQ 80 (135)
T ss_dssp ---HHHHHHHSTCCEEECSSTTEEEES-TSEEETTSS-SS-EEEEESSS-STTEEEEEEEEESSCSSBBEES-EEEEETT
T ss_pred CccHHHHHHhCCcccccCCCCCEEeecccccccccCCCCCceeEEEEEEcCCCcEEEEEecCCchhhhhhhchhhhhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceeeeeccCCCcceeeCCC
Q psy17338 102 VAKFNDLRFVGRSGREAHNNKAPD 125 (130)
Q Consensus 102 vA~FNDLRFVGRSGRGKsFtls~~ 125 (130)
|||||||||||||||||||+|+|.
T Consensus 81 vA~FnDLRFvGRSGRGKsFtltIt 104 (135)
T PF00853_consen 81 VARFNDLRFVGRSGRGKSFTLTIT 104 (135)
T ss_dssp EEEESS-EECST-TTTSEEEEEEE
T ss_pred cccccccccccccCCccceEEEEE
Confidence 999999999999999999999874
No 2
>KOG3982|consensus
Probab=100.00 E-value=9.6e-68 Score=457.16 Aligned_cols=110 Identities=73% Similarity=1.108 Sum_probs=106.4
Q ss_pred hHhhhhHHHHHhhcCCCCccccCCCceEeecCCCccccCCCCCcceEEEEeeeCCCCeEEEEeecCCCccccccccceee
Q psy17338 18 EVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAV 97 (130)
Q Consensus 18 ~~~~er~l~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaLg~V~DGT~Vtv~AGNDEn~~aELRN~~av 97 (130)
..+.+|+|+++|+|||||||+|+||+||||+||+|||||||||++|||||||||||||+|||+||||||||||||||+|+
T Consensus 94 mt~~~rt~~~~laehpgeLvrT~SPn~lcs~LP~HWRsNKtlp~aFkVvaLgdVpDgT~Vti~aGNDEnyc~ElRN~tA~ 173 (475)
T KOG3982|consen 94 MTLVFRTVVEFLAEHPGELVRTSSPNFLCSVLPTHWRSNKTLPVAFKVVALGDVPDGTLVTIMAGNDENYCAELRNCTAV 173 (475)
T ss_pred hhhhHHHHHHHHHhCccceeecCCCceeeecCcchhccCCcccceeEEEEecccCCCcEEEEEecCCcchhHHhhhhHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccceeeecceeeeeccCCCcceeeCCCCc
Q psy17338 98 MKNQVAKFNDLRFVGRSGREAHNNKAPDSY 127 (130)
Q Consensus 98 mknqvA~FNDLRFVGRSGRGKsFtls~~~~ 127 (130)
|||||||||||||||||||||||||+|--|
T Consensus 174 mknQVAkFNDLRFVGRSGRGKsFtLTIti~ 203 (475)
T KOG3982|consen 174 MKNQVAKFNDLRFVGRSGRGKSFTLTITIF 203 (475)
T ss_pred HHhhhhhhccceeecccCCCcceEEEEEEe
Confidence 999999999999999999999999987543
No 3
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=70.93 E-value=4.6 Score=31.58 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=26.0
Q ss_pred eEEEEeecCCCccc-------cccccceeeeccceeeeccee----------eeeccCCCcce
Q psy17338 75 TIVTIRAGNDENYC-------GELRNCTAVMKNQVAKFNDLR----------FVGRSGREAHN 120 (130)
Q Consensus 75 T~Vtv~AGNDEn~~-------aELRN~~avmknqvA~FNDLR----------FVGRSGRGKsF 120 (130)
|+|.|...|+|..- =+++|-+-...+. .-|+|+- .+|.||.|||=
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~il~~vsl~i~~Ge~~~I~G~nGsGKST 65 (271)
T PRK14238 4 TVVNVQVKNEEKIETAPKKVVFDTQNLNLWYGED-HALKNINLDIHENEVTAIIGPSGCGKST 65 (271)
T ss_pred eEEEEEecchhhhccCCCceEEEEeeeEEEECCc-ceeeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 66777777776532 2344444333222 2344443 57999999984
No 4
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=70.90 E-value=8.2 Score=31.26 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHhhcCCCCccccCCCceEeecCCCccccCCCCCcceEEEEeee--CCCCe-EEEEeecCCCccc
Q psy17338 25 LDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGD--VMDGT-IVTIRAGNDENYC 88 (130)
Q Consensus 25 l~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaLg~--V~DGT-~Vtv~AGNDEn~~ 88 (130)
+...|+...|.-+-.++|.+-+. || ...+|-+.++ .+.|+ .++|+--+..+++
T Consensus 42 ~~~~l~~~~~~~l~~~~p~~~~~-l~----------~g~Rv~~~~~p~~~~~~~~i~IRk~~~~~~s 97 (308)
T TIGR02788 42 LARAIASFSKQSISEENPILSAT-LP----------GGERVQIVIPPACENDTVSITIRKPSLVDFS 97 (308)
T ss_pred HHHHHHHHhCCcccCCCceEEEE-CC----------CCeEEEEECCCcccCCCceEEEECCCCCCCC
Confidence 44445666676667799988877 34 4456766653 45566 8888887766654
No 5
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=68.83 E-value=4.9 Score=37.40 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=24.3
Q ss_pred EEEeecCCCccccccccceeeeccc--eeeecceeeeeccCCCcc
Q psy17338 77 VTIRAGNDENYCGELRNCTAVMKNQ--VAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 77 Vtv~AGNDEn~~aELRN~~avmknq--vA~FNDLRFVGRSGRGKs 119 (130)
|+.+=+.|++ .-|+|..=.++.. || .|||||+|||
T Consensus 477 vsf~y~~~~~--~vL~~isL~I~~Ge~va------IvG~SGsGKS 513 (709)
T COG2274 477 VSFRYGPDDP--PVLEDLSLEIPPGEKVA------IVGRSGSGKS 513 (709)
T ss_pred EEEEeCCCCc--chhhceeEEeCCCCEEE------EECCCCCCHH
Confidence 5556666655 4566666666665 55 6999999998
No 6
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=67.40 E-value=2.4 Score=30.02 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=10.0
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
|+|+||.|||=
T Consensus 107 ~~G~~nvGKSt 117 (157)
T cd01858 107 FIGYPNVGKSS 117 (157)
T ss_pred EEeCCCCChHH
Confidence 89999999983
No 7
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=65.80 E-value=2.4 Score=36.36 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=9.4
Q ss_pred eeeccCCCcc
Q psy17338 110 FVGRSGREAH 119 (130)
Q Consensus 110 FVGRSGRGKs 119 (130)
+||+||.|||
T Consensus 360 iVG~sGsGKS 369 (567)
T COG1132 360 IVGPSGSGKS 369 (567)
T ss_pred EECCCCCCHH
Confidence 7999999996
No 8
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=65.73 E-value=2.7 Score=39.19 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=50.9
Q ss_pred HHHHHhhcCCCCcccc--CCCceEeecCCCccccCCCCCcc--eEEEEeeeCCCCeEEEEeecCCCcccc---cccccee
Q psy17338 24 TLDSLLAEHPGELTRT--GCPHVVCTVLPTHWRSNKTLPVA--FKVVALGDVMDGTIVTIRAGNDENYCG---ELRNCTA 96 (130)
Q Consensus 24 ~l~~~l~~~~gelv~T--~sP~~lCs~LP~HWRsNKtLP~~--FkVvaLg~V~DGT~Vtv~AGNDEn~~a---ELRN~~a 96 (130)
.+..++++..-.+++- ....-+.+.||.+|+.|.-.+.- .-+.++- | ...+..|...+.|. +-+.+.+
T Consensus 395 ~v~~~l~~~g~~~~~e~~~~~~af~a~lPg~~~~~~r~~~itt~n~a~l~--p---~~~~~~G~~~~~~~~~~~~~~~l~ 469 (852)
T PRK13891 395 LVEKAINRLGFAARIETINTMDAYLGSLPGHGVENVRRPLINTMNLADLL--P---TSSIWTGSATAPCPMYPPLSPALM 469 (852)
T ss_pred HHHHHHHhCCcEEEEcccccHHHHHhcCCCCcccccccccccchhhHHhh--h---hccccCCccCCCCcccCCCCCceE
Confidence 3556666664444433 45667889999988765443220 0011111 1 22456666555332 1233444
Q ss_pred eecccee---eec----c---eeeeeccCCCcceee
Q psy17338 97 VMKNQVA---KFN----D---LRFVGRSGREAHNNK 122 (130)
Q Consensus 97 vmknqvA---~FN----D---LRFVGRSGRGKsFtl 122 (130)
.++..-. +|| | .-.+|.||.||||.+
T Consensus 470 ~~~t~~~~p~~fN~h~~d~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 470 HCVTVGATPFRLNLHVRDLGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred EEecCCCCceEEEeEeCCCCeEEEECCCCCCHHHHH
Confidence 4443322 455 1 357899999999976
No 9
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=65.08 E-value=2.6 Score=32.38 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=12.4
Q ss_pred eeeeccCCCcceeeCC
Q psy17338 109 RFVGRSGREAHNNKAP 124 (130)
Q Consensus 109 RFVGRSGRGKsFtls~ 124 (130)
=+||.||.|||=.+..
T Consensus 29 ~IvG~NGsGKStll~A 44 (251)
T cd03273 29 AITGLNGSGKSNILDA 44 (251)
T ss_pred EEECCCCCCHHHHHHH
Confidence 3899999999865443
No 10
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=64.05 E-value=2.8 Score=28.10 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=14.6
Q ss_pred ceeeec----ceeeeeccCCCcce
Q psy17338 101 QVAKFN----DLRFVGRSGREAHN 120 (130)
Q Consensus 101 qvA~FN----DLRFVGRSGRGKsF 120 (130)
+...|. ..=+.|.+|+|||=
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKST 38 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKST 38 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHH
Confidence 455564 25689999999983
No 11
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=63.86 E-value=3 Score=30.36 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=11.7
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
.=++|.||.|||=.+
T Consensus 18 v~I~GpSGsGKSTLl 32 (107)
T cd00820 18 VLITGDSGIGKTELA 32 (107)
T ss_pred EEEEcCCCCCHHHHH
Confidence 357899999998544
No 12
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=63.85 E-value=7.3 Score=29.75 Aligned_cols=42 Identities=26% Similarity=0.482 Sum_probs=28.6
Q ss_pred CeEEEEeecCCCcc----ccccccc--eeeeccceeee--cceeeeeccC
Q psy17338 74 GTIVTIRAGNDENY----CGELRNC--TAVMKNQVAKF--NDLRFVGRSG 115 (130)
Q Consensus 74 GT~Vtv~AGNDEn~----~aELRN~--~avmknqvA~F--NDLRFVGRSG 115 (130)
+..|.+-.||-|.+ ..+++.. .-.+.+....| +++||+|=.|
T Consensus 61 ~~pv~~v~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ig~~g 110 (239)
T TIGR03729 61 GIKVTFNAGNHDMLKDLTYEEIESNDSPLYLHNRFIDIPNTQWRIIGNNG 110 (239)
T ss_pred CCcEEEECCCCCCCCCCCHHHHHhccchhhhcccccccCCCceEEEeecc
Confidence 45677889999975 2335542 12456666678 9999999775
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=63.75 E-value=2.7 Score=35.14 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=10.5
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
-+||.||+|||=-
T Consensus 33 silGpSGcGKSTL 45 (248)
T COG1116 33 AILGPSGCGKSTL 45 (248)
T ss_pred EEECCCCCCHHHH
Confidence 3689999999843
No 14
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=61.86 E-value=3.1 Score=33.32 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|+||.|||=
T Consensus 34 IllvG~tGvGKSS 46 (249)
T cd01853 34 ILVLGKTGVGKSS 46 (249)
T ss_pred EEEECCCCCcHHH
Confidence 3479999999984
No 15
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=61.35 E-value=3.3 Score=32.03 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=18.5
Q ss_pred CCCccccccccceeeeccceeeecceeeeeccCCCcc
Q psy17338 83 NDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 83 NDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKs 119 (130)
++.....|||.. +++++ .=|+|-||.|||
T Consensus 21 ~~~~g~~~l~~~---l~~k~-----~vl~G~SGvGKS 49 (161)
T PF03193_consen 21 KTGEGIEELKEL---LKGKT-----SVLLGQSGVGKS 49 (161)
T ss_dssp TTTTTHHHHHHH---HTTSE-----EEEECSTTSSHH
T ss_pred CCCcCHHHHHHH---hcCCE-----EEEECCCCCCHH
Confidence 355555666643 33333 347999999998
No 16
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=61.15 E-value=5.5 Score=30.28 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+|.||.|||=
T Consensus 33 ~i~G~nGsGKST 44 (253)
T TIGR02323 33 GIVGESGSGKST 44 (253)
T ss_pred EEECCCCCCHHH
Confidence 458999999984
No 17
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=60.65 E-value=5.5 Score=33.93 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=9.4
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
.+|+||.|||=
T Consensus 35 iIG~SGaGKST 45 (258)
T COG3638 35 IIGPSGAGKST 45 (258)
T ss_pred EECCCCCcHHH
Confidence 47999999983
No 18
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=60.60 E-value=3.7 Score=30.85 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=12.4
Q ss_pred eeeeccCCCcceeeCC
Q psy17338 109 RFVGRSGREAHNNKAP 124 (130)
Q Consensus 109 RFVGRSGRGKsFtls~ 124 (130)
=++|++|.|||=-+..
T Consensus 27 ~i~GpNGsGKStll~a 42 (243)
T cd03272 27 VVVGRNGSGKSNFFAA 42 (243)
T ss_pred EEECCCCCCHHHHHHH
Confidence 3899999999855443
No 19
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=59.82 E-value=3.5 Score=34.81 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=10.4
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.=+||+||.|||
T Consensus 364 vaIvG~SGsGKS 375 (529)
T TIGR02868 364 VAILGPSGSGKS 375 (529)
T ss_pred EEEECCCCCCHH
Confidence 347999999998
No 20
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=59.09 E-value=2.4 Score=31.66 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=12.0
Q ss_pred eeeccCCCcceeeC
Q psy17338 110 FVGRSGREAHNNKA 123 (130)
Q Consensus 110 FVGRSGRGKsFtls 123 (130)
.+|.+|.|||+++.
T Consensus 28 I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 28 IFGTTGSGKSNTVK 41 (229)
T ss_pred EECCCCCCHHHHHH
Confidence 46999999999875
No 21
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=58.93 E-value=3.9 Score=32.23 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=22.6
Q ss_pred EEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCcc
Q psy17338 76 IVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 76 ~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKs 119 (130)
.+.++|-+.++ -.||.+..+ ++ -.=|+|.||.|||
T Consensus 100 v~~~SAktg~g-i~eLf~~l~---~~-----~~~~~G~sgvGKS 134 (245)
T TIGR00157 100 VLMTSSKNQDG-LKELIEALQ---NR-----ISVFAGQSGVGKS 134 (245)
T ss_pred EEEEecCCchh-HHHHHhhhc---CC-----EEEEECCCCCCHH
Confidence 34567777665 455665433 22 2349999999998
No 22
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=57.88 E-value=4.1 Score=30.14 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 31 ~~i~G~nGsGKST 43 (220)
T cd03263 31 FGLLGHNGAGKTT 43 (220)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999983
No 23
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=57.79 E-value=3.3 Score=31.13 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=14.5
Q ss_pred eeeeccCCCcceeeCCCCc
Q psy17338 109 RFVGRSGREAHNNKAPDSY 127 (130)
Q Consensus 109 RFVGRSGRGKsFtls~~~~ 127 (130)
-++|.+|.|||=-+..+.|
T Consensus 32 ~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 32 LICGPTGAGKSTILDAITY 50 (213)
T ss_pred EEECCCCCCHHHHHHHhee
Confidence 3899999999966655543
No 24
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=56.23 E-value=4.5 Score=29.84 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (222)
T cd03224 29 VALLGRNGAGKTT 41 (222)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999983
No 25
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=55.98 E-value=4.6 Score=29.67 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=11.2
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=.+|+||.|||=-
T Consensus 30 ~~l~G~nGsGKSTL 43 (211)
T cd03225 30 VLIVGPNGSGKSTL 43 (211)
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999843
No 26
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=55.64 E-value=4.8 Score=30.47 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=11.2
Q ss_pred eeeeccCCCcceee
Q psy17338 109 RFVGRSGREAHNNK 122 (130)
Q Consensus 109 RFVGRSGRGKsFtl 122 (130)
-++|+||.|||=-+
T Consensus 26 ~i~G~nGsGKStll 39 (197)
T cd03278 26 AIVGPNGSGKSNII 39 (197)
T ss_pred EEECCCCCCHHHHH
Confidence 38999999998544
No 27
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=55.58 E-value=4.7 Score=29.57 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=10.3
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+-.+|+||.|||
T Consensus 30 ~~i~G~nGsGKS 41 (214)
T cd03292 30 VFLVGPSGAGKS 41 (214)
T ss_pred EEEECCCCCCHH
Confidence 457899999998
No 28
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=55.24 E-value=4.8 Score=29.73 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|+||.|||=
T Consensus 28 ~~l~G~nGsGKST 40 (213)
T cd03235 28 LAIVGPNGAGKST 40 (213)
T ss_pred EEEECCCCCCHHH
Confidence 3578999999984
No 29
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=55.20 E-value=4.7 Score=34.55 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=9.8
Q ss_pred eeeeccCCCcc
Q psy17338 109 RFVGRSGREAH 119 (130)
Q Consensus 109 RFVGRSGRGKs 119 (130)
=.||+||.|||
T Consensus 380 aIvG~SGsGKS 390 (588)
T PRK11174 380 ALVGPSGAGKT 390 (588)
T ss_pred EEECCCCCCHH
Confidence 46999999998
No 30
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.15 E-value=4.8 Score=29.66 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=11.6
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+-++|.||.|||=-
T Consensus 28 ~~i~G~nGsGKSTL 41 (211)
T cd03264 28 YGLLGPNGAGKTTL 41 (211)
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999843
No 31
>PRK12288 GTPase RsgA; Reviewed
Probab=54.94 E-value=4.8 Score=33.96 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=24.7
Q ss_pred eEEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCcce
Q psy17338 75 TIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAHN 120 (130)
Q Consensus 75 T~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKsF 120 (130)
..+.++|-+.++ ..||+.... +++ .=|+|.||.|||=
T Consensus 184 ~v~~vSA~tg~G-ideL~~~L~---~ki-----~~~vG~sgVGKST 220 (347)
T PRK12288 184 RVLMVSSHTGEG-LEELEAALT---GRI-----SIFVGQSGVGKSS 220 (347)
T ss_pred eEEEEeCCCCcC-HHHHHHHHh---hCC-----EEEECCCCCCHHH
Confidence 456677877776 456665442 333 3489999999983
No 32
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=54.76 E-value=5.2 Score=30.70 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.9
Q ss_pred eeeeccCCCcceeeCC
Q psy17338 109 RFVGRSGREAHNNKAP 124 (130)
Q Consensus 109 RFVGRSGRGKsFtls~ 124 (130)
=|+|++|.|||=.|..
T Consensus 29 ~ivGpNGaGKSTll~~ 44 (212)
T cd03274 29 AIVGPNGSGKSNVIDS 44 (212)
T ss_pred EEECCCCCCHHHHHHH
Confidence 4899999999866654
No 33
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.45 E-value=5 Score=30.15 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 29 ~~l~G~nGsGKST 41 (235)
T cd03261 29 LAIIGPSGSGKST 41 (235)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999983
No 34
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=54.31 E-value=5 Score=33.04 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.2
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=++|+||.|||=-
T Consensus 111 v~IvG~~GsGKSTL 124 (329)
T PRK14257 111 TAFIGPSGCGKSTF 124 (329)
T ss_pred EEEECCCCCCHHHH
Confidence 45799999999843
No 35
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=54.28 E-value=5 Score=35.37 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.4
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=.||+||.|||
T Consensus 482 vaIvG~sGsGKS 493 (686)
T TIGR03797 482 VAIVGPSGSGKS 493 (686)
T ss_pred EEEECCCCCCHH
Confidence 447999999998
No 36
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=54.21 E-value=5.1 Score=29.49 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|.||.|||=
T Consensus 31 ~~l~G~nGsGKST 43 (214)
T TIGR02673 31 LFLTGPSGAGKTT 43 (214)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999984
No 37
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=53.86 E-value=13 Score=26.03 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=11.4
Q ss_pred ceeeeeccCCCcce
Q psy17338 107 DLRFVGRSGREAHN 120 (130)
Q Consensus 107 DLRFVGRSGRGKsF 120 (130)
-.=|+|.||.|||=
T Consensus 85 ~~~~~G~~~vGKst 98 (141)
T cd01857 85 TIGLVGYPNVGKSS 98 (141)
T ss_pred EEEEECCCCCCHHH
Confidence 35689999999984
No 38
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=53.64 E-value=5.1 Score=35.42 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=10.6
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+-.||+||.|||
T Consensus 503 vaIvG~SGsGKS 514 (708)
T TIGR01193 503 TTIVGMSGSGKS 514 (708)
T ss_pred EEEECCCCCCHH
Confidence 457999999998
No 39
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=53.38 E-value=5.3 Score=34.13 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
.=.||+||.|||=
T Consensus 372 ~aIvG~sGsGKST 384 (582)
T PRK11176 372 VALVGRSGSGKST 384 (582)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999983
No 40
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=53.08 E-value=5.5 Score=29.67 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=11.1
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+-++|+||.|||=-
T Consensus 31 ~~i~G~nGsGKSTL 44 (207)
T PRK13539 31 LVLTGPNGSGKTTL 44 (207)
T ss_pred EEEECCCCCCHHHH
Confidence 34789999999843
No 41
>PRK00098 GTPase RsgA; Reviewed
Probab=52.83 E-value=5.5 Score=32.22 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=22.1
Q ss_pred EEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCcce
Q psy17338 76 IVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAHN 120 (130)
Q Consensus 76 ~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKsF 120 (130)
.+.++|-+.++ ..+|+... ++.+ .=|+|+||.|||=
T Consensus 144 v~~vSA~~g~g-i~~L~~~l---~gk~-----~~~~G~sgvGKSt 179 (298)
T PRK00098 144 VLELSAKEGEG-LDELKPLL---AGKV-----TVLAGQSGVGKST 179 (298)
T ss_pred EEEEeCCCCcc-HHHHHhhc---cCce-----EEEECCCCCCHHH
Confidence 35566666655 34555432 3322 4589999999984
No 42
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.77 E-value=5.6 Score=29.31 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (210)
T cd03269 29 FGLLGPNGAGKTT 41 (210)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 43
>PLN03232 ABC transporter C family member; Provisional
Probab=52.70 E-value=5.4 Score=39.33 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=10.5
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.=+|||||.|||
T Consensus 1265 vaIVG~SGSGKS 1276 (1495)
T PLN03232 1265 VGVVGRTGAGKS 1276 (1495)
T ss_pred EEEECCCCCCHH
Confidence 457999999998
No 44
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=52.60 E-value=5.6 Score=29.15 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 29 ~~l~G~nGsGKST 41 (213)
T cd03262 29 VVIIGPSGSGKST 41 (213)
T ss_pred EEEECCCCCCHHH
Confidence 4478999999983
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.60 E-value=5.6 Score=29.59 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (220)
T cd03265 29 FGLLGPNGAGKTT 41 (220)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 46
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=52.42 E-value=5.7 Score=29.38 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 32 ~~i~G~nGsGKST 44 (216)
T TIGR00960 32 VFLVGHSGAGKST 44 (216)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 47
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=52.33 E-value=6.6 Score=33.20 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=11.0
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||+|||=
T Consensus 31 v~iiGpSGSGKST 43 (240)
T COG1126 31 VVIIGPSGSGKST 43 (240)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999984
No 48
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=52.04 E-value=5.4 Score=37.25 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+||||+|||=
T Consensus 368 AIlG~SGsGKST 379 (573)
T COG4987 368 AILGRSGSGKST 379 (573)
T ss_pred EEECCCCCCHHH
Confidence 469999999983
No 49
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=51.89 E-value=4.8 Score=29.45 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=0.0
Q ss_pred eeccceeeecceee
Q psy17338 97 VMKNQVAKFNDLRF 110 (130)
Q Consensus 97 vmknqvA~FNDLRF 110 (130)
-||||+||||-.|=
T Consensus 3 ~mkq~i~kf~~v~s 16 (83)
T PF05356_consen 3 GMKQAIAKFRPVPS 16 (83)
T ss_dssp --------------
T ss_pred hHHHHHHhcCCcHH
Confidence 59999999998764
No 50
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=51.63 E-value=37 Score=28.35 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=57.7
Q ss_pred hhHHHHHhhcCCCCccccCCCceEeecCCCccccCCCCCcceEEEEe-eeCCCCeEEEEeecCCCcccc-ccccc-----
Q psy17338 22 ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVAL-GDVMDGTIVTIRAGNDENYCG-ELRNC----- 94 (130)
Q Consensus 22 er~l~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL-g~V~DGT~Vtv~AGNDEn~~a-ELRN~----- 94 (130)
.+.+.+.|+.+.|.-+-..+|.+-|. ||. ...+|-+. .++.+|..++|+--....+.- +|...
T Consensus 66 ~~~~~~~lA~~~g~~~~~~~P~l~~~-lp~---------~G~Rv~~~~~p~~~g~~~~IRk~~~~~~tl~~l~~~g~~~~ 135 (319)
T PRK13894 66 AQAIIETIAGYHGKEVTRSKPILEGE-LPL---------DGSRFAGQLPPVVPAPTFAIRKKAVAIFTLDQYVERGIMTA 135 (319)
T ss_pred HHHHHHHHHHHcCCcccCCCceEEEE-cCC---------CCEEEEEEcCCcCCCcEEEEECCCCCCCCHHHHHhcCCCCH
Confidence 46778888999999999999966554 341 23455443 456678889999865544332 23211
Q ss_pred --eeeeccceeeecceeeeeccCCCcceee
Q psy17338 95 --TAVMKNQVAKFNDLRFVGRSGREAHNNK 122 (130)
Q Consensus 95 --~avmknqvA~FNDLRFVGRSGRGKsFtl 122 (130)
.+.++..+..=.-+=++|.+|.||+-.+
T Consensus 136 ~~~~~L~~~v~~~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 136 AQREAIIAAVRAHRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHH
Confidence 1234444444455678999999998443
No 51
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=51.61 E-value=5.8 Score=34.12 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=9.7
Q ss_pred eeeeccCCCcc
Q psy17338 109 RFVGRSGREAH 119 (130)
Q Consensus 109 RFVGRSGRGKs 119 (130)
=.||+||.|||
T Consensus 371 aIvG~SGsGKS 381 (592)
T PRK10790 371 ALVGHTGSGKS 381 (592)
T ss_pred EEECCCCCCHH
Confidence 46899999998
No 52
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=51.55 E-value=6 Score=29.22 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 34 ~~i~G~nGsGKST 46 (218)
T cd03266 34 TGLLGPNGAGKTT 46 (218)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 53
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=51.35 E-value=10 Score=29.26 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=19.3
Q ss_pred cccceeeeccceeeecc-e-eeeeccCCCcceeeC
Q psy17338 91 LRNCTAVMKNQVAKFND-L-RFVGRSGREAHNNKA 123 (130)
Q Consensus 91 LRN~~avmknqvA~FND-L-RFVGRSGRGKsFtls 123 (130)
|+|.... ++..-.|++ + =|+|++|.|||=-|.
T Consensus 8 i~nfr~~-~~~~i~~~~g~n~i~G~NgsGKS~lle 41 (213)
T cd03277 8 LENFVTY-DETEFRPGPSLNMIIGPNGSGKSSIVC 41 (213)
T ss_pred EeCCCCc-ceeEEecCCCeEEEECCCCCCHHHHHH
Confidence 4444443 333334554 2 589999999985443
No 54
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=51.10 E-value=6.2 Score=29.39 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 33 ~~i~G~nGsGKST 45 (220)
T cd03293 33 VALVGPSGCGKST 45 (220)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 55
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=50.86 E-value=6 Score=34.87 Aligned_cols=11 Identities=27% Similarity=0.446 Sum_probs=9.8
Q ss_pred eeeeccCCCcc
Q psy17338 109 RFVGRSGREAH 119 (130)
Q Consensus 109 RFVGRSGRGKs 119 (130)
=.|||||.|||
T Consensus 36 GIIG~SGAGKS 46 (339)
T COG1135 36 GIIGYSGAGKS 46 (339)
T ss_pred EEEcCCCCcHH
Confidence 46999999998
No 56
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=50.65 E-value=6.3 Score=29.40 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 39 ~~i~G~nGsGKST 51 (228)
T PRK10584 39 IALIGESGSGKST 51 (228)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 57
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=50.42 E-value=6.3 Score=30.23 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=11.0
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=++|.||.|||=-
T Consensus 33 ~~i~G~nGsGKSTL 46 (258)
T PRK14241 33 TAFIGPSGCGKSTV 46 (258)
T ss_pred EEEECCCCCCHHHH
Confidence 34689999999843
No 58
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=50.25 E-value=5.8 Score=27.79 Aligned_cols=43 Identities=16% Similarity=0.110 Sum_probs=27.9
Q ss_pred EEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCcc
Q psy17338 76 IVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 76 ~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKs 119 (130)
.+.++|-+.++ ..+|++...-+-..-++.--.-++|.||.|||
T Consensus 73 ~~~iSa~~~~g-i~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gks 115 (156)
T cd01859 73 VVYVSAKERLG-TKILRRTIKELAKIDGKEGKVGVVGYPNVGKS 115 (156)
T ss_pred EEEEEcccccc-HHHHHHHHHHHHhhcCCCcEEEEECCCCCCHH
Confidence 46677766655 45677665543333334445689999999997
No 59
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=50.22 E-value=6.3 Score=34.81 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=10.5
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.-.||+||.|||
T Consensus 508 vaIvG~sGsGKS 519 (710)
T TIGR03796 508 VALVGGSGSGKS 519 (710)
T ss_pred EEEECCCCCCHH
Confidence 457999999998
No 60
>PLN03130 ABC transporter C family member; Provisional
Probab=50.12 E-value=6.2 Score=39.50 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=10.5
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=+|||||.|||
T Consensus 1268 VaIVGrSGSGKS 1279 (1622)
T PLN03130 1268 VGIVGRTGAGKS 1279 (1622)
T ss_pred EEEECCCCCCHH
Confidence 457999999998
No 61
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=50.05 E-value=6.5 Score=29.04 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 34 ~~i~G~nGsGKST 46 (228)
T cd03257 34 LGLVGESGSGKST 46 (228)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 62
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=49.89 E-value=6.6 Score=29.35 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 29 ~~l~G~nGsGKST 41 (236)
T cd03219 29 HGLIGPNGAGKTT 41 (236)
T ss_pred EEEECCCCCCHHH
Confidence 4478999999984
No 63
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=49.59 E-value=6.7 Score=29.29 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=11.0
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 29 ~~l~G~nGsGKST 41 (230)
T TIGR03410 29 TCVLGRNGVGKTT 41 (230)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999983
No 64
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=49.56 E-value=6.7 Score=30.04 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=10.5
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
=.+|.||.|||=-
T Consensus 25 ~l~G~sGsGKSTL 37 (226)
T cd03270 25 VITGVSGSGKSSL 37 (226)
T ss_pred EEEcCCCCCHHHH
Confidence 3689999999843
No 65
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=49.53 E-value=5.1 Score=35.77 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.7
Q ss_pred eeeeeccCCCcceeeC
Q psy17338 108 LRFVGRSGREAHNNKA 123 (130)
Q Consensus 108 LRFVGRSGRGKsFtls 123 (130)
.=.+|.||.||||.+.
T Consensus 433 ~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 433 IAVVGGSGAGKSFFMQ 448 (797)
T ss_pred eEEEcCCCCCHHHHHH
Confidence 5689999999999864
No 66
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=49.39 E-value=6.8 Score=29.84 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=10.5
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
=.+|+||.|||=-
T Consensus 33 ~i~G~nGsGKSTL 45 (250)
T PRK14245 33 AFIGPSGCGKSTF 45 (250)
T ss_pred EEECCCCCCHHHH
Confidence 3689999999843
No 67
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=49.38 E-value=6.6 Score=33.38 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=10.2
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.=.+|+||+|||
T Consensus 369 i~IvG~sGsGKS 380 (576)
T TIGR02204 369 VALVGPSGAGKS 380 (576)
T ss_pred EEEECCCCCCHH
Confidence 346999999998
No 68
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=49.06 E-value=6.9 Score=28.53 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 27 ~~i~G~nGsGKST 39 (206)
T TIGR03608 27 YAIIGESGSGKST 39 (206)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 69
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=48.94 E-value=7 Score=28.86 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 33 ~~l~G~nGsGKST 45 (218)
T cd03255 33 VAIVGPSGSGKST 45 (218)
T ss_pred EEEEcCCCCCHHH
Confidence 3468999999983
No 70
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=48.93 E-value=6.7 Score=38.77 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=16.5
Q ss_pred ccccceeeeccceeeecceeeeeccCCCcc
Q psy17338 90 ELRNCTAVMKNQVAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 90 ELRN~~avmknqvA~FNDLRFVGRSGRGKs 119 (130)
-|+|-+-.++.. .=+=+|||||.|||
T Consensus 1301 vL~~is~~I~~G----ekiaIVGrTGsGKS 1326 (1522)
T TIGR00957 1301 VLRHINVTIHGG----EKVGIVGRTGAGKS 1326 (1522)
T ss_pred cccceeEEEcCC----CEEEEECCCCCCHH
Confidence 355554444332 23557999999998
No 71
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.91 E-value=7 Score=28.86 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=10.3
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=.+|.||.|||
T Consensus 29 ~~i~G~nGsGKS 40 (213)
T cd03259 29 LALLGPSGCGKT 40 (213)
T ss_pred EEEECCCCCCHH
Confidence 447899999998
No 72
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.78 E-value=7 Score=29.24 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 34 ~~l~G~nGsGKST 46 (233)
T cd03258 34 FGIIGRSGAGKST 46 (233)
T ss_pred EEEECCCCCCHHH
Confidence 4478999999983
No 73
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=48.64 E-value=7.1 Score=29.11 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=11.0
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 29 ~~l~G~nGsGKST 41 (232)
T cd03218 29 VGLLGPNGAGKTT 41 (232)
T ss_pred EEEECCCCCCHHH
Confidence 5578999999983
No 74
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=48.54 E-value=7.2 Score=28.92 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|+||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (201)
T cd03231 29 LQVTGPNGSGKTT 41 (201)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 75
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=48.43 E-value=7 Score=33.58 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=10.5
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.-+||+||.|||
T Consensus 352 ~aivG~sGsGKS 363 (547)
T PRK10522 352 LFLIGGNGSGKS 363 (547)
T ss_pred EEEECCCCCCHH
Confidence 457999999998
No 76
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=48.34 E-value=8.4 Score=32.61 Aligned_cols=12 Identities=42% Similarity=0.601 Sum_probs=10.4
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
|=.||.||+|||
T Consensus 36 lgivGeSGsGKS 47 (252)
T COG1124 36 LGIVGESGSGKS 47 (252)
T ss_pred EEEEcCCCCCHH
Confidence 456999999998
No 77
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=48.18 E-value=7.5 Score=29.15 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=10.5
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=++|.||.|||
T Consensus 36 ~~l~G~nGsGKS 47 (226)
T cd03234 36 MAILGSSGSGKT 47 (226)
T ss_pred EEEECCCCCCHH
Confidence 457999999998
No 78
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=48.18 E-value=7.3 Score=28.20 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=++|.||.|||=
T Consensus 30 ~l~G~nGsGKST 41 (163)
T cd03216 30 ALLGENGAGKST 41 (163)
T ss_pred EEECCCCCCHHH
Confidence 478999999984
No 79
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=48.03 E-value=7.3 Score=29.92 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|+||.|||=
T Consensus 32 ~~l~G~nGsGKST 44 (254)
T PRK10418 32 LALVGGSGSGKSL 44 (254)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999984
No 80
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=48.02 E-value=7.4 Score=27.52 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=10.4
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=++|++|.|||
T Consensus 22 i~ilG~~~~GKS 33 (190)
T cd00879 22 ILFLGLDNAGKT 33 (190)
T ss_pred EEEECCCCCCHH
Confidence 368999999997
No 81
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=47.84 E-value=7.3 Score=36.08 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=12.6
Q ss_pred cceeeeeccCCCcceee
Q psy17338 106 NDLRFVGRSGREAHNNK 122 (130)
Q Consensus 106 NDLRFVGRSGRGKsFtl 122 (130)
+=.=+||+||.|||=-+
T Consensus 348 ~~talvG~SGaGKSTLl 364 (559)
T COG4988 348 QLTALVGASGAGKSTLL 364 (559)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 33458999999998443
No 82
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.81 E-value=7.4 Score=29.64 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|+||.|||=
T Consensus 34 ~i~G~nGsGKST 45 (251)
T PRK14249 34 AIIGPSGCGKST 45 (251)
T ss_pred EEECCCCCCHHH
Confidence 368999999984
No 83
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=47.80 E-value=7.1 Score=38.55 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.6
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+-+|||||.|||
T Consensus 1248 vaIvGrSGsGKS 1259 (1490)
T TIGR01271 1248 VGLLGRTGSGKS 1259 (1490)
T ss_pred EEEECCCCCCHH
Confidence 457999999998
No 84
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.67 E-value=7.4 Score=30.54 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=10.5
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
=++|+||.|||=-
T Consensus 34 ~i~G~NGsGKSTL 46 (277)
T PRK13652 34 AVIGPNGAGKSTL 46 (277)
T ss_pred EEECCCCCCHHHH
Confidence 3689999999843
No 85
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=47.42 E-value=8.7 Score=27.76 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=26.2
Q ss_pred eEEEEeecCCCccccccccceeee-----ccceeeec----ceeeeeccCCCcce
Q psy17338 75 TIVTIRAGNDENYCGELRNCTAVM-----KNQVAKFN----DLRFVGRSGREAHN 120 (130)
Q Consensus 75 T~Vtv~AGNDEn~~aELRN~~avm-----knqvA~FN----DLRFVGRSGRGKsF 120 (130)
..+.++|-++++ ..+|++....+ ++.-+++. .+.++|+||.|||=
T Consensus 77 ~vi~iSa~~~~g-i~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKst 130 (171)
T cd01856 77 KVLFVNAKSGKG-VKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKST 130 (171)
T ss_pred eEEEEECCCccc-HHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHH
Confidence 357778877665 45555543322 01111111 37899999999973
No 86
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=47.01 E-value=7.7 Score=29.90 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+|.||.|||=
T Consensus 43 ~i~G~nGsGKST 54 (260)
T PRK10744 43 AFIGPSGCGKST 54 (260)
T ss_pred EEECCCCCCHHH
Confidence 368999999984
No 87
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=47.00 E-value=7.8 Score=28.67 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 35 ~i~G~nGsGKST 46 (221)
T TIGR02211 35 AIVGSSGSGKST 46 (221)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 88
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=46.95 E-value=8.2 Score=27.24 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=11.2
Q ss_pred ceeeeeccCCCcc
Q psy17338 107 DLRFVGRSGREAH 119 (130)
Q Consensus 107 DLRFVGRSGRGKs 119 (130)
++=++|.+|.|||
T Consensus 26 ~v~ivG~~~~GKS 38 (196)
T PRK00454 26 EIAFAGRSNVGKS 38 (196)
T ss_pred EEEEEcCCCCCHH
Confidence 3678999999997
No 89
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=46.80 E-value=7.9 Score=28.48 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 29 ~~l~G~nGsGKST 41 (213)
T cd03301 29 VVLLGPSGCGKTT 41 (213)
T ss_pred EEEECCCCCCHHH
Confidence 4478999999983
No 90
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=46.78 E-value=7.9 Score=28.19 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 29 ~l~G~nGsGKSt 40 (180)
T cd03214 29 GILGPNGAGKST 40 (180)
T ss_pred EEECCCCCCHHH
Confidence 478999999983
No 91
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=46.74 E-value=7.7 Score=32.81 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=10.5
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.-+||.||.|||
T Consensus 351 ~~ivG~sGsGKS 362 (529)
T TIGR02857 351 VALVGPSGAGKS 362 (529)
T ss_pred EEEECCCCCCHH
Confidence 457999999998
No 92
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=46.74 E-value=7.9 Score=28.85 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (227)
T cd03260 29 TALIGPSGCGKST 41 (227)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 93
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=46.70 E-value=11 Score=27.77 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=19.8
Q ss_pred cccceeee-ccceeeecc--eeeeeccCCCcceee
Q psy17338 91 LRNCTAVM-KNQVAKFND--LRFVGRSGREAHNNK 122 (130)
Q Consensus 91 LRN~~avm-knqvA~FND--LRFVGRSGRGKsFtl 122 (130)
|.|..... ++..-.|.. .-|+|.+|.|||=-+
T Consensus 7 i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~il 41 (220)
T PF02463_consen 7 IENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNIL 41 (220)
T ss_dssp EESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHH
T ss_pred EcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHH
Confidence 44444444 444445655 568999999998433
No 94
>PTZ00243 ABC transporter; Provisional
Probab=46.69 E-value=7.6 Score=38.70 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=10.4
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=+|||||+|||
T Consensus 1339 VaIVGrTGSGKS 1350 (1560)
T PTZ00243 1339 VGIVGRTGSGKS 1350 (1560)
T ss_pred EEEECCCCCCHH
Confidence 457999999998
No 95
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=46.66 E-value=7.3 Score=31.80 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=11.3
Q ss_pred eeeccCCCcceeeCC
Q psy17338 110 FVGRSGREAHNNKAP 124 (130)
Q Consensus 110 FVGRSGRGKsFtls~ 124 (130)
.+|.||+|||==|.+
T Consensus 36 I~GpSGSGKSTLLni 50 (226)
T COG1136 36 IVGPSGSGKSTLLNL 50 (226)
T ss_pred EECCCCCCHHHHHHH
Confidence 479999999954443
No 96
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=46.51 E-value=8 Score=28.46 Aligned_cols=13 Identities=15% Similarity=0.498 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (205)
T cd03226 29 IALTGKNGAGKTT 41 (205)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 97
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=46.50 E-value=8.3 Score=28.86 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (243)
T TIGR01978 29 HAIMGPNGSGKST 41 (243)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 98
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=46.49 E-value=9.4 Score=28.47 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=12.3
Q ss_pred eeccCCCcceeeCC
Q psy17338 111 VGRSGREAHNNKAP 124 (130)
Q Consensus 111 VGRSGRGKsFtls~ 124 (130)
.|-+|.||+||+.-
T Consensus 30 yG~tGsGKT~Tm~G 43 (186)
T cd01363 30 YGQTGSGKTYTMEG 43 (186)
T ss_pred ECCCCCcceEecCC
Confidence 69999999999864
No 99
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.47 E-value=8 Score=30.09 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|.||.|||=
T Consensus 30 ~~i~G~nGsGKST 42 (271)
T PRK13638 30 TGLVGANGCGKST 42 (271)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999983
No 100
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=46.33 E-value=8.1 Score=29.27 Aligned_cols=11 Identities=18% Similarity=0.447 Sum_probs=9.6
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
++|.||.|||=
T Consensus 38 i~G~nGsGKST 48 (252)
T CHL00131 38 IMGPNGSGKST 48 (252)
T ss_pred EECCCCCCHHH
Confidence 68999999983
No 101
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=46.24 E-value=8.2 Score=27.98 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|+||.|||=
T Consensus 31 ~~i~G~nGsGKSt 43 (178)
T cd03247 31 IALLGRSGSGKST 43 (178)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 102
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.21 E-value=8.1 Score=29.43 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 32 ~~i~G~nGsGKST 44 (241)
T PRK14250 32 YTIVGPSGAGKST 44 (241)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 103
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.11 E-value=8.2 Score=29.32 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
.-.+|+||.|||=
T Consensus 33 ~~i~G~nGsGKST 45 (251)
T PRK14251 33 TALIGPSGCGKST 45 (251)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999984
No 104
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.09 E-value=8.2 Score=29.41 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|+||.|||=
T Consensus 31 ~~i~G~nGsGKST 43 (246)
T PRK14269 31 TALIGASGCGKST 43 (246)
T ss_pred EEEECCCCCCHHH
Confidence 4478999999983
No 105
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.07 E-value=8.1 Score=29.46 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=11.0
Q ss_pred eeeeccCCCcceee
Q psy17338 109 RFVGRSGREAHNNK 122 (130)
Q Consensus 109 RFVGRSGRGKsFtl 122 (130)
-.+|+||.|||=-+
T Consensus 36 ~i~G~nGsGKSTLl 49 (253)
T PRK14261 36 ALIGPSGCGKSTLL 49 (253)
T ss_pred EEECCCCCCHHHHH
Confidence 46899999998433
No 106
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=45.99 E-value=8.1 Score=31.07 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=22.0
Q ss_pred EEEeecCCCccccccccceeeeccceeeecceeeeeccCCCccee
Q psy17338 77 VTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAHNN 121 (130)
Q Consensus 77 Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKsFt 121 (130)
+.++|-+.++. .+|+...+ + .-.=|+|.||.|||=.
T Consensus 142 ~~vSA~~g~gi-~~L~~~L~---~-----k~~~~~G~sg~GKSTl 177 (287)
T cd01854 142 LAVSAKTGEGL-DELREYLK---G-----KTSVLVGQSGVGKSTL 177 (287)
T ss_pred EEEECCCCccH-HHHHhhhc---c-----ceEEEECCCCCCHHHH
Confidence 45666665543 44544322 2 2356999999999843
No 107
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.94 E-value=8.2 Score=29.17 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=11.0
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 31 ~~i~G~nGsGKST 43 (239)
T cd03296 31 VALLGPSGSGKTT 43 (239)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999984
No 108
>PRK12289 GTPase RsgA; Reviewed
Probab=45.89 E-value=8.4 Score=32.71 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=23.8
Q ss_pred EEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCcc
Q psy17338 76 IVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 76 ~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKs 119 (130)
.+.++|-+.++. .+|++... +.+ .=|+|.||.|||
T Consensus 152 v~~iSA~tg~GI-~eL~~~L~---~ki-----~v~iG~SgVGKS 186 (352)
T PRK12289 152 PLFISVETGIGL-EALLEQLR---NKI-----TVVAGPSGVGKS 186 (352)
T ss_pred EEEEEcCCCCCH-HHHhhhhc---cce-----EEEEeCCCCCHH
Confidence 456777777663 56665442 222 569999999998
No 109
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=45.79 E-value=8.1 Score=33.31 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=10.5
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.=.||+||.|||
T Consensus 364 v~IvG~sGsGKS 375 (588)
T PRK13657 364 VAIVGPTGAGKS 375 (588)
T ss_pred EEEECCCCCCHH
Confidence 457999999998
No 110
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=45.72 E-value=8.2 Score=31.49 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=+||.||.|||=
T Consensus 36 ~~ivG~sGsGKST 48 (330)
T PRK15093 36 RGLVGESGSGKSL 48 (330)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999983
No 111
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=45.71 E-value=8.2 Score=31.01 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|+||.|||=
T Consensus 33 ~~IvG~nGsGKST 45 (275)
T cd03289 33 VGLLGRTGSGKST 45 (275)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999983
No 112
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=45.70 E-value=7.4 Score=26.99 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=27.3
Q ss_pred EEEeeeCCCCeEEEEeecCCCccccccccceeee
Q psy17338 65 VVALGDVMDGTIVTIRAGNDENYCGELRNCTAVM 98 (130)
Q Consensus 65 VvaLg~V~DGT~Vtv~AGNDEn~~aELRN~~avm 98 (130)
+.-.++|+.|+.|.++-++-+...+.++.....+
T Consensus 50 l~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~ 83 (136)
T PF10442_consen 50 LTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA 83 (136)
T ss_pred EEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh
Confidence 3455899999999999999888877777666555
No 113
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=45.65 E-value=8.4 Score=28.92 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 31 ~~l~G~nGsGKST 43 (243)
T TIGR02315 31 VAIIGPSGAGKST 43 (243)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999983
No 114
>PRK03846 adenylylsulfate kinase; Provisional
Probab=45.65 E-value=8.4 Score=28.67 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=10.6
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=++|.||.|||
T Consensus 27 i~i~G~~GsGKS 38 (198)
T PRK03846 27 LWFTGLSGSGKS 38 (198)
T ss_pred EEEECCCCCCHH
Confidence 568999999996
No 115
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=45.51 E-value=8.4 Score=28.51 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 30 ~~l~G~nGsGKST 42 (204)
T PRK13538 30 VQIEGPNGAGKTS 42 (204)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 116
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=45.11 E-value=8.6 Score=29.93 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|+||.|||=
T Consensus 42 ~~i~G~NGsGKST 54 (267)
T PRK15112 42 LAIIGENGSGKST 54 (267)
T ss_pred EEEEcCCCCCHHH
Confidence 4478999999983
No 117
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=45.08 E-value=8.7 Score=29.43 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|+||.|||=
T Consensus 31 ~~l~G~nGsGKST 43 (255)
T PRK11231 31 TALIGPNGCGKST 43 (255)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999984
No 118
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=45.00 E-value=8.7 Score=29.78 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-++|.||.|||=
T Consensus 41 ~i~G~nGsGKST 52 (265)
T PRK10575 41 GLIGHNGSGKST 52 (265)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 119
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=44.98 E-value=9 Score=28.76 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|+||.|||=
T Consensus 33 ~l~G~nGsGKST 44 (238)
T cd03249 33 ALVGSSGCGKST 44 (238)
T ss_pred EEEeCCCCCHHH
Confidence 368999999984
No 120
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=44.92 E-value=8.8 Score=28.51 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|+||.|||=
T Consensus 29 ~~i~G~nGsGKSt 41 (200)
T cd03217 29 HALMGPNGSGKST 41 (200)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 121
>COG0218 Predicted GTPase [General function prediction only]
Probab=44.87 E-value=8.7 Score=31.27 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=10.8
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.=|+|||-.|||
T Consensus 27 IaF~GRSNVGKS 38 (200)
T COG0218 27 IAFAGRSNVGKS 38 (200)
T ss_pred EEEEccCcccHH
Confidence 459999999998
No 122
>PRK10908 cell division protein FtsE; Provisional
Probab=44.85 E-value=8.8 Score=28.60 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 31 ~~i~G~nGsGKST 43 (222)
T PRK10908 31 AFLTGHSGAGKST 43 (222)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999983
No 123
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.82 E-value=12 Score=27.81 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=9.8
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 33 ~i~G~nGsGKST 44 (229)
T cd03254 33 AIVGPTGAGKTT 44 (229)
T ss_pred EEECCCCCCHHH
Confidence 358999999984
No 124
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.78 E-value=8.9 Score=27.75 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 29 ~~i~G~nGsGKSt 41 (173)
T cd03230 29 YGLLGPNGAGKTT 41 (173)
T ss_pred EEEECCCCCCHHH
Confidence 5678999999983
No 125
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=44.72 E-value=8.8 Score=29.05 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 34 ~~i~G~nGsGKST 46 (252)
T PRK14239 34 TALIGPSGSGKST 46 (252)
T ss_pred EEEECCCCCCHHH
Confidence 4468999999984
No 126
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=44.67 E-value=8.9 Score=28.94 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 30 ~~i~G~nGsGKST 42 (236)
T TIGR03864 30 VALLGPNGAGKST 42 (236)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999983
No 127
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.52 E-value=9 Score=28.94 Aligned_cols=12 Identities=25% Similarity=0.456 Sum_probs=10.3
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.-++|+||.|||
T Consensus 29 ~~i~G~nGsGKS 40 (232)
T cd03300 29 FTLLGPSGCGKT 40 (232)
T ss_pred EEEECCCCCCHH
Confidence 457899999998
No 128
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=44.48 E-value=8.5 Score=27.48 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=11.3
Q ss_pred eeeeccCCCcceee
Q psy17338 109 RFVGRSGREAHNNK 122 (130)
Q Consensus 109 RFVGRSGRGKsFtl 122 (130)
=+.|.+|.|||+-+
T Consensus 36 ~i~g~~g~GKT~~~ 49 (193)
T PF13481_consen 36 LIAGPPGSGKTTLA 49 (193)
T ss_dssp EEEECSTSSHHHHH
T ss_pred EEEeCCCCCHHHHH
Confidence 46899999999754
No 129
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=44.41 E-value=9 Score=28.49 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 37 ~~l~G~nGsGKST 49 (224)
T TIGR02324 37 VALSGPSGAGKST 49 (224)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 130
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.33 E-value=9.1 Score=28.60 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 30 ~~i~G~nGsGKST 42 (241)
T cd03256 30 VALIGPSGAGKST 42 (241)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 131
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=44.32 E-value=8.8 Score=33.90 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.7
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.-.||+||.|||
T Consensus 494 iaIvG~sGsGKS 505 (694)
T TIGR03375 494 VAIIGRIGSGKS 505 (694)
T ss_pred EEEECCCCCCHH
Confidence 557999999998
No 132
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=44.21 E-value=28 Score=29.19 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=51.9
Q ss_pred hHHHHHhhcCCCCccccCCCceEeecCCCccccCCCCCcceEEEEeeeCCCCe-EEEEeecCCCccc-ccccc-------
Q psy17338 23 RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGT-IVTIRAGNDENYC-GELRN------- 93 (130)
Q Consensus 23 r~l~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaLg~V~DGT-~Vtv~AGNDEn~~-aELRN------- 93 (130)
+.+.+.++.+.+.-+...+|.+-+. ||..-|-+-.+|. -+++|+ .++|+--...+++ .+|..
T Consensus 57 ~~l~~~ia~~~~~~i~~~~P~l~~~-Lp~G~Rv~~~~~p--------~~~~~~~~~~IRk~~~~~~sl~~l~~~g~~~~~ 127 (332)
T PRK13900 57 KALGRLVAQATEQKISEEKPLLSAT-LPNGYRIQIVFPP--------ACEIGQIVYSIRKPSGMQLTLDDYEKMGAFDET 127 (332)
T ss_pred HHHHHHHHHHcCCcccCCCceEEEE-cCCCeEEEEEcCC--------cccCCCceEEEECCCCCCCCHHHHHhcCCCCcc
Confidence 4466777888888888899976665 5543343333322 134555 5778776554332 22210
Q ss_pred ---------------------ceeeeccceeeecceeeeeccCCCcceee
Q psy17338 94 ---------------------CTAVMKNQVAKFNDLRFVGRSGREAHNNK 122 (130)
Q Consensus 94 ---------------------~~avmknqvA~FNDLRFVGRSGRGKsFtl 122 (130)
..+.++..|..--.+=++|..|.||+=.|
T Consensus 128 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~~v~~~~nili~G~tgSGKTTll 177 (332)
T PRK13900 128 ATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGGTSTGKTTFT 177 (332)
T ss_pred cccccccchhhhhhhhhhhHHHHHHHHHHHHcCCcEEEECCCCCCHHHHH
Confidence 01223333333445779999999998554
No 133
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.19 E-value=9.1 Score=29.48 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|+||.|||=
T Consensus 36 ~~l~G~nGsGKST 48 (259)
T PRK14260 36 TAIIGPSGCGKST 48 (259)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 134
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.19 E-value=9 Score=29.64 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||.|||=
T Consensus 50 ~~i~G~nGsGKST 62 (268)
T PRK14248 50 TALIGPSGCGKST 62 (268)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999984
No 135
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.17 E-value=9.3 Score=26.96 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
.-++|.+|.|||=
T Consensus 28 ~~i~G~nGsGKSt 40 (157)
T cd00267 28 VALVGPNGSGKST 40 (157)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999983
No 136
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=44.14 E-value=9.1 Score=29.36 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+|.||+|||=
T Consensus 36 ~i~G~nGsGKST 47 (258)
T PRK11701 36 GIVGESGSGKTT 47 (258)
T ss_pred EEECCCCCCHHH
Confidence 358999999983
No 137
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=44.11 E-value=9.2 Score=28.12 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.+|.|||=
T Consensus 30 ~l~G~nGsGKST 41 (195)
T PRK13541 30 YIKGANGCGKSS 41 (195)
T ss_pred EEECCCCCCHHH
Confidence 478999999983
No 138
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.03 E-value=9.3 Score=27.79 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (178)
T cd03229 29 VALLGPSGSGKST 41 (178)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999983
No 139
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=43.95 E-value=9.2 Score=28.87 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=10.2
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+-++|.||.|||
T Consensus 31 ~~i~G~nGsGKS 42 (242)
T PRK11124 31 LVLLGPSGAGKS 42 (242)
T ss_pred EEEECCCCCCHH
Confidence 347899999998
No 140
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=43.92 E-value=9.2 Score=28.77 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|+||.|||=
T Consensus 28 ~~l~G~nGsGKST 40 (232)
T PRK10771 28 VAILGPSGAGKST 40 (232)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 141
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=43.82 E-value=9.3 Score=29.04 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+|.||.|||=
T Consensus 36 ~i~G~nGsGKST 47 (253)
T PRK14242 36 ALIGPSGCGKST 47 (253)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 142
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.77 E-value=11 Score=27.84 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 27 ~~l~G~nGsGKST 39 (211)
T cd03298 27 TAIVGPSGSGKST 39 (211)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999984
No 143
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=43.74 E-value=18 Score=32.10 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=10.4
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
=.||.||.|||=.
T Consensus 46 ~lvG~nGsGKSTL 58 (623)
T PRK10261 46 AIVGESGSGKSVT 58 (623)
T ss_pred EEECCCCChHHHH
Confidence 3589999999843
No 144
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=43.69 E-value=9.4 Score=28.97 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=11.5
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
+-.+|.||.|||=-+
T Consensus 32 ~~i~G~nGsGKSTLl 46 (250)
T PRK14240 32 TALIGPSGCGKSTFL 46 (250)
T ss_pred EEEECCCCCCHHHHH
Confidence 347899999998433
No 145
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=43.45 E-value=9.5 Score=28.99 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=11.0
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|+||.|||=
T Consensus 29 ~~l~G~nGsGKST 41 (237)
T TIGR00968 29 VALLGPSGSGKST 41 (237)
T ss_pred EEEECCCCCCHHH
Confidence 4589999999984
No 146
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=43.42 E-value=12 Score=30.34 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=12.3
Q ss_pred eeccCCCcceeeCC
Q psy17338 111 VGRSGREAHNNKAP 124 (130)
Q Consensus 111 VGRSGRGKsFtls~ 124 (130)
.|-+|.||+||+.-
T Consensus 80 yG~tgSGKT~Tm~G 93 (341)
T cd01372 80 YGQTGSGKTYTMGT 93 (341)
T ss_pred ecCCCCCCcEEecC
Confidence 68999999999854
No 147
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=43.40 E-value=11 Score=26.67 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=25.7
Q ss_pred EEEEeecCCCccccccccceeee---------ccc-eeeecceeeeeccCCCcceee
Q psy17338 76 IVTIRAGNDENYCGELRNCTAVM---------KNQ-VAKFNDLRFVGRSGREAHNNK 122 (130)
Q Consensus 76 ~Vtv~AGNDEn~~aELRN~~avm---------knq-vA~FNDLRFVGRSGRGKsFtl 122 (130)
.+.++|-+.++ ..+|++..... ++. ..+=-.+-++|++|.|||--+
T Consensus 62 ii~vSa~~~~g-i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstli 117 (155)
T cd01849 62 PFKISATNGQG-IEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVI 117 (155)
T ss_pred EEEEeccCCcC-hhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHH
Confidence 46677777665 45565532110 000 011123669999999999643
No 148
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=43.38 E-value=11 Score=28.03 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=11.4
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+-++|.||.|||=-
T Consensus 30 ~~i~G~nGsGKSTL 43 (218)
T cd03290 30 TMIVGQVGCGKSSL 43 (218)
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999843
No 149
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.37 E-value=9.5 Score=30.04 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 40 ~~l~G~nGsGKST 52 (289)
T PRK13645 40 TCVIGTTGSGKST 52 (289)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 150
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=43.36 E-value=9.5 Score=29.56 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-++|.||.|||=
T Consensus 37 ~i~G~nGsGKST 48 (265)
T PRK10253 37 AIIGPNGCGKST 48 (265)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 151
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=43.33 E-value=9.6 Score=28.92 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=10.6
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
-.+|.||.|||=-
T Consensus 25 ~l~G~nG~GKSTL 37 (176)
T cd03238 25 VVTGVSGSGKSTL 37 (176)
T ss_pred EEECCCCCCHHHH
Confidence 4789999999843
No 152
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=43.31 E-value=9.6 Score=28.71 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 39 ~l~G~nGsGKST 50 (233)
T PRK11629 39 AIVGSSGSGKST 50 (233)
T ss_pred EEECCCCCCHHH
Confidence 468999999983
No 153
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.24 E-value=9.5 Score=29.89 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=11.1
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=++|+||.|||=-
T Consensus 31 ~~l~G~nGsGKSTL 44 (275)
T PRK13639 31 VALLGPNGAGKSTL 44 (275)
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999843
No 154
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=43.23 E-value=9.7 Score=27.79 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=10.3
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+-.+|.||.|||
T Consensus 29 ~~i~G~nGsGKS 40 (182)
T cd03215 29 VGIAGLVGNGQT 40 (182)
T ss_pred EEEECCCCCCHH
Confidence 457899999998
No 155
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=43.20 E-value=50 Score=26.93 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=31.2
Q ss_pred EEeecCCCccc--------ccccc-ceeeeccceeeecceeeeeccCCCcceeeC
Q psy17338 78 TIRAGNDENYC--------GELRN-CTAVMKNQVAKFNDLRFVGRSGREAHNNKA 123 (130)
Q Consensus 78 tv~AGNDEn~~--------aELRN-~~avmknqvA~FNDLRFVGRSGRGKsFtls 123 (130)
..--||-|++. .+++. ..-.++-+|-+++.||+.|=||..|.+...
T Consensus 77 ~fi~GNHE~~~~l~~l~~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~ 131 (262)
T cd00844 77 IFIGGNHEASNYLWELPYGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYR 131 (262)
T ss_pred EEECCCCCCHHHHHhhcCCCeecCcEEEecCCCEEEECCeEEEEecccccccccc
Confidence 44568888732 23333 334456699999999999999988865433
No 156
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=43.20 E-value=8.5 Score=31.64 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=11.3
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=+||.||.|||=-
T Consensus 45 ~~ivG~sGsGKSTL 58 (330)
T PRK09473 45 LGIVGESGSGKSQT 58 (330)
T ss_pred EEEECCCCchHHHH
Confidence 45799999999843
No 157
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=43.12 E-value=9.7 Score=28.74 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 32 ~~l~G~nGsGKST 44 (241)
T PRK10895 32 VGLLGPNGAGKTT 44 (241)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 158
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=43.02 E-value=9.7 Score=29.02 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (252)
T TIGR03005 29 VALIGPSGSGKST 41 (252)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 159
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=42.97 E-value=9.8 Score=29.19 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-++|.||.|||=
T Consensus 35 ~l~G~nGsGKST 46 (257)
T PRK10619 35 SIIGSSGSGKST 46 (257)
T ss_pred EEECCCCCCHHH
Confidence 468999999973
No 160
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.78 E-value=9.8 Score=28.92 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 34 ~l~G~nGsGKST 45 (253)
T PRK14267 34 ALMGPSGCGKST 45 (253)
T ss_pred EEECCCCCCHHH
Confidence 368999999984
No 161
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.76 E-value=9.5 Score=29.96 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=11.0
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+-++|.||.|||=-
T Consensus 34 ~~i~G~nGsGKSTL 47 (274)
T PRK13647 34 TALLGPNGAGKSTL 47 (274)
T ss_pred EEEECCCCCcHHHH
Confidence 44789999999843
No 162
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=42.72 E-value=9.9 Score=32.74 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=13.0
Q ss_pred eeeeeccCCCcceeeC
Q psy17338 108 LRFVGRSGREAHNNKA 123 (130)
Q Consensus 108 LRFVGRSGRGKsFtls 123 (130)
+=++|-||+|||=.|-
T Consensus 32 ~vllGPSGcGKSTlLr 47 (338)
T COG3839 32 VVLLGPSGCGKSTLLR 47 (338)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4578999999997664
No 163
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.70 E-value=9.8 Score=30.08 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=11.2
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+-++|.||.|||=-
T Consensus 36 ~~i~G~nGsGKSTL 49 (286)
T PRK13646 36 YAIVGQTGSGKSTL 49 (286)
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999843
No 164
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=42.66 E-value=11 Score=26.32 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=10.2
Q ss_pred eeeccCCCcceee
Q psy17338 110 FVGRSGREAHNNK 122 (130)
Q Consensus 110 FVGRSGRGKsFtl 122 (130)
|+|.+|.|||--+
T Consensus 24 i~G~Ng~GKStil 36 (202)
T PF13476_consen 24 IYGPNGSGKSTIL 36 (202)
T ss_dssp EEESTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 6788999998544
No 165
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.65 E-value=9.9 Score=28.16 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=10.4
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=.+|.||.|||
T Consensus 26 ~~i~G~nGsGKS 37 (214)
T cd03297 26 TGIFGASGAGKS 37 (214)
T ss_pred EEEECCCCCCHH
Confidence 457899999997
No 166
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.65 E-value=9.9 Score=29.00 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 36 ~~i~G~nGsGKST 48 (254)
T PRK14273 36 TALIGPSGCGKST 48 (254)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 167
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=42.64 E-value=7.9 Score=33.86 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.1
Q ss_pred eeeeeccCCCcceeeC
Q psy17338 108 LRFVGRSGREAHNNKA 123 (130)
Q Consensus 108 LRFVGRSGRGKsFtls 123 (130)
+-|+|.||+||+=+|-
T Consensus 30 ~vliGpSGsGKTTtLk 45 (309)
T COG1125 30 LVLIGPSGSGKTTTLK 45 (309)
T ss_pred EEEECCCCCcHHHHHH
Confidence 4589999999997653
No 168
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=42.53 E-value=10 Score=27.88 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|.||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (198)
T TIGR01189 29 LQVTGPNGIGKTT 41 (198)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 169
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.49 E-value=10 Score=29.63 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=++|+||.|||=
T Consensus 39 ~l~G~nGsGKST 50 (271)
T PRK13632 39 AILGHNGSGKST 50 (271)
T ss_pred EEECCCCCCHHH
Confidence 368999999983
No 170
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=42.20 E-value=10 Score=27.06 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 29 ~~i~G~nGsGKSt 41 (144)
T cd03221 29 IGLVGRNGAGKST 41 (144)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999983
No 171
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=42.07 E-value=11 Score=23.83 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=13.1
Q ss_pred ceeeeeccCCCcceee
Q psy17338 107 DLRFVGRSGREAHNNK 122 (130)
Q Consensus 107 DLRFVGRSGRGKsFtl 122 (130)
-+-++|-+|.||+..+
T Consensus 21 ~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 21 NLLLYGPPGTGKTTLA 36 (151)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4668999999998754
No 172
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=42.06 E-value=10 Score=28.58 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 30 ~~l~G~nGsGKST 42 (240)
T PRK09493 30 VVIIGPSGSGKST 42 (240)
T ss_pred EEEECCCCCCHHH
Confidence 4478999999983
No 173
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=42.00 E-value=10 Score=30.11 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=11.1
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=++|+||.|||=-
T Consensus 30 ~~l~G~nGsGKSTL 43 (272)
T PRK13547 30 TALLGRNGAGKSTL 43 (272)
T ss_pred EEEECCCCCCHHHH
Confidence 34789999999843
No 174
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=41.94 E-value=10 Score=28.51 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 31 ~~l~G~nGsGKST 43 (242)
T TIGR03411 31 RVIIGPNGAGKTT 43 (242)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 175
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=41.77 E-value=10 Score=28.70 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-++|+||.|||=
T Consensus 52 ~i~G~nGsGKST 63 (224)
T cd03220 52 GLIGRNGAGKST 63 (224)
T ss_pred EEECCCCCCHHH
Confidence 468999999983
No 176
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=41.71 E-value=9.8 Score=31.15 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=11.5
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+-+||.||.|||=.
T Consensus 36 ~~lvG~sGsGKSTL 49 (326)
T PRK11022 36 VGIVGESGSGKSVS 49 (326)
T ss_pred EEEECCCCChHHHH
Confidence 45799999999854
No 177
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=41.56 E-value=11 Score=28.28 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-++|.||.|||=
T Consensus 41 ~i~G~nGsGKST 52 (214)
T PRK13543 41 LVQGDNGAGKTT 52 (214)
T ss_pred EEEcCCCCCHHH
Confidence 368999999983
No 178
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=41.47 E-value=11 Score=29.30 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 40 ~~i~G~nGsGKST 52 (265)
T TIGR02769 40 VGLLGRSGCGKST 52 (265)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 179
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=41.45 E-value=6.1 Score=30.24 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=12.6
Q ss_pred cCCCccccCCCCCcce---EEEEeeeC
Q psy17338 48 VLPTHWRSNKTLPVAF---KVVALGDV 71 (130)
Q Consensus 48 ~LP~HWRsNKtLP~~F---kVvaLg~V 71 (130)
..|+||||..+|..-. +|.++..|
T Consensus 85 ~~~s~~~~~~sL~~~L~~~~ipgi~gv 111 (131)
T PF00988_consen 85 DIPSHWRSEMSLDEWLKEHGIPGISGV 111 (131)
T ss_dssp SS---TT-SB-HHHHHHHTT-EEEESS
T ss_pred CCCccccccCCHHHHHHHCCCeeeeCC
Confidence 3499999999998654 67766544
No 180
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=41.43 E-value=11 Score=29.27 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|.||.|||=
T Consensus 31 ~~i~G~nGsGKST 43 (258)
T PRK13548 31 VAILGPNGAGKST 43 (258)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999984
No 181
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=41.28 E-value=11 Score=28.43 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=11.1
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||.|||=
T Consensus 30 ~~i~G~nGsGKST 42 (248)
T PRK09580 30 HAIMGPNGSGKST 42 (248)
T ss_pred EEEECCCCCCHHH
Confidence 5689999999983
No 182
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=41.23 E-value=13 Score=30.32 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=12.5
Q ss_pred eeccCCCcceeeCCC
Q psy17338 111 VGRSGREAHNNKAPD 125 (130)
Q Consensus 111 VGRSGRGKsFtls~~ 125 (130)
.|-+|.||+||+.-.
T Consensus 88 yG~tgSGKTyTm~G~ 102 (333)
T cd01371 88 YGQTGTGKTFTMEGV 102 (333)
T ss_pred cCCCCCCCcEeecCC
Confidence 488999999998643
No 183
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=41.09 E-value=11 Score=32.61 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=10.2
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=++|+||+|||=
T Consensus 35 ~liG~NGsGKST 46 (552)
T TIGR03719 35 GVLGLNGAGKST 46 (552)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 184
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=41.08 E-value=10 Score=32.20 Aligned_cols=10 Identities=50% Similarity=0.797 Sum_probs=9.3
Q ss_pred eeeccCCCcc
Q psy17338 110 FVGRSGREAH 119 (130)
Q Consensus 110 FVGRSGRGKs 119 (130)
.+|+||.|||
T Consensus 363 IvG~sGsGKS 372 (571)
T TIGR02203 363 LVGRSGSGKS 372 (571)
T ss_pred EECCCCCCHH
Confidence 6899999998
No 185
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.06 E-value=11 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=10.4
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
-.+|.||.|||=-
T Consensus 33 ~i~G~nGsGKSTL 45 (250)
T PRK14262 33 AIIGPSGCGKTTL 45 (250)
T ss_pred EEECCCCCCHHHH
Confidence 3689999999843
No 186
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.91 E-value=11 Score=28.64 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 34 ~~l~G~nGsGKST 46 (252)
T PRK14255 34 TALIGPSGCGKST 46 (252)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 187
>PLN03073 ABC transporter F family; Provisional
Probab=40.89 E-value=11 Score=34.77 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=11.5
Q ss_pred eeeeccCCCcceeeC
Q psy17338 109 RFVGRSGREAHNNKA 123 (130)
Q Consensus 109 RFVGRSGRGKsFtls 123 (130)
=+||+||.|||=-|.
T Consensus 207 gLvG~NGsGKSTLLr 221 (718)
T PLN03073 207 GLVGRNGTGKTTFLR 221 (718)
T ss_pred EEECCCCCCHHHHHH
Confidence 369999999985443
No 188
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.87 E-value=11 Score=28.71 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 33 ~~i~G~nGsGKST 45 (251)
T PRK14270 33 TALIGPSGCGKST 45 (251)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999983
No 189
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.84 E-value=11 Score=28.60 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 32 ~~i~G~nGsGKST 44 (250)
T PRK14247 32 TALMGPSGSGKST 44 (250)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999984
No 190
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=40.83 E-value=14 Score=30.03 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=12.1
Q ss_pred eeccCCCcceeeCC
Q psy17338 111 VGRSGREAHNNKAP 124 (130)
Q Consensus 111 VGRSGRGKsFtls~ 124 (130)
.|-+|.||+||+.-
T Consensus 87 yG~tgSGKTyTm~G 100 (319)
T cd01376 87 YGSTGAGKTHTMLG 100 (319)
T ss_pred ECCCCCCCcEEEeC
Confidence 48999999999964
No 191
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=40.75 E-value=19 Score=27.33 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=12.2
Q ss_pred eeeeccCCCcceeeCC
Q psy17338 109 RFVGRSGREAHNNKAP 124 (130)
Q Consensus 109 RFVGRSGRGKsFtls~ 124 (130)
-++|.||.|||=-|..
T Consensus 26 ~i~G~NGsGKTTLl~a 41 (204)
T cd03240 26 LIVGQNGAGKTTIIEA 41 (204)
T ss_pred EEECCCCCCHHHHHHH
Confidence 4689999999855444
No 192
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=40.57 E-value=11 Score=28.55 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+|.||.|||=
T Consensus 35 ~l~G~nGsGKST 46 (255)
T PRK11300 35 SLIGPNGAGKTT 46 (255)
T ss_pred EEECCCCCCHHH
Confidence 368999999984
No 193
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=40.54 E-value=11 Score=28.45 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 32 ~~i~G~nGsGKST 44 (250)
T PRK11264 32 VAIIGPSGSGKTT 44 (250)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 194
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=40.52 E-value=10 Score=28.83 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 28 ~~l~G~nGsGKST 40 (177)
T cd03222 28 IGIVGPNGTGKTT 40 (177)
T ss_pred EEEECCCCChHHH
Confidence 3478999999983
No 195
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=40.51 E-value=11 Score=27.76 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=++|.||.|||=
T Consensus 31 ~l~G~nGsGKST 42 (200)
T PRK13540 31 HLKGSNGAGKTT 42 (200)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 196
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=40.50 E-value=11 Score=33.84 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=9.8
Q ss_pred eeeeccCCCcc
Q psy17338 109 RFVGRSGREAH 119 (130)
Q Consensus 109 RFVGRSGRGKs 119 (130)
=.||+||.|||
T Consensus 511 aIvG~SGsGKS 521 (711)
T TIGR00958 511 ALVGPSGSGKS 521 (711)
T ss_pred EEECCCCCCHH
Confidence 46999999998
No 197
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=40.37 E-value=11 Score=29.31 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 37 ~i~G~nGsGKST 48 (269)
T PRK11831 37 AIMGPSGIGKTT 48 (269)
T ss_pred EEECCCCCCHHH
Confidence 468999999983
No 198
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=40.09 E-value=7.9 Score=28.49 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=11.0
Q ss_pred eeeeeccCCCcceeeC
Q psy17338 108 LRFVGRSGREAHNNKA 123 (130)
Q Consensus 108 LRFVGRSGRGKsFtls 123 (130)
+=..|.||.|||..|.
T Consensus 41 ~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLR 56 (205)
T ss_dssp EEEE--TTSSHHHHHH
T ss_pred EEEEcCCCCCccHHHH
Confidence 4478999999998764
No 199
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=39.99 E-value=12 Score=27.95 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 43 ~~i~G~nGsGKST 55 (226)
T cd03248 43 TALVGPSGSGKST 55 (226)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 200
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=39.96 E-value=8.6 Score=34.05 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=13.2
Q ss_pred eeeeeccCCCcceeeC
Q psy17338 108 LRFVGRSGREAHNNKA 123 (130)
Q Consensus 108 LRFVGRSGRGKsFtls 123 (130)
.=.+|.||.||||.+.
T Consensus 437 ~~I~G~tGsGKS~~~~ 452 (785)
T TIGR00929 437 TLIFGPTGSGKTTLLN 452 (785)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4578999999999763
No 201
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.93 E-value=12 Score=29.00 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=++|+||.|||=
T Consensus 46 ~i~G~nGsGKST 57 (265)
T PRK14252 46 ALIGPSGCGKST 57 (265)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 202
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=39.93 E-value=12 Score=28.84 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=13.1
Q ss_pred eeeeccCCCcceeeCCCC
Q psy17338 109 RFVGRSGREAHNNKAPDS 126 (130)
Q Consensus 109 RFVGRSGRGKsFtls~~~ 126 (130)
=++|++|.|||=-|..++
T Consensus 26 ~i~G~NGsGKStll~ai~ 43 (247)
T cd03275 26 CIIGPNGSGKSNLMDAIS 43 (247)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 478999999985554433
No 203
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=39.88 E-value=12 Score=30.33 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=9.3
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
+.|.||+|||=
T Consensus 26 vtGvSGsGKSt 36 (261)
T cd03271 26 VTGVSGSGKSS 36 (261)
T ss_pred EECCCCCchHH
Confidence 57999999983
No 204
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=39.86 E-value=15 Score=30.14 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=15.1
Q ss_pred ecceeee-eccCCCcceeeCCC
Q psy17338 105 FNDLRFV-GRSGREAHNNKAPD 125 (130)
Q Consensus 105 FNDLRFV-GRSGRGKsFtls~~ 125 (130)
||-.=|. |-+|.||+||+.-+
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~ 102 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGD 102 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCC
Confidence 4444443 89999999999643
No 205
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=39.83 E-value=12 Score=28.51 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 30 ~~i~G~nGsGKST 42 (247)
T TIGR00972 30 TALIGPSGCGKST 42 (247)
T ss_pred EEEECCCCCCHHH
Confidence 4478999999984
No 206
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.82 E-value=12 Score=29.22 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 37 ~l~G~nGsGKST 48 (280)
T PRK13649 37 AFIGHTGSGKST 48 (280)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 207
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=39.79 E-value=12 Score=29.54 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 41 ~~I~G~NGsGKST 53 (257)
T PRK11247 41 VAVVGRSGCGKST 53 (257)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 208
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=39.73 E-value=12 Score=28.85 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 33 ~~i~G~nGsGKST 45 (262)
T PRK09984 33 VALLGPSGSGKST 45 (262)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 209
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.56 E-value=12 Score=29.61 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|+||.|||=
T Consensus 35 ~~i~G~nGaGKST 47 (283)
T PRK13636 35 TAILGGNGAGKST 47 (283)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 210
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=39.50 E-value=12 Score=29.45 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|.||.|||=
T Consensus 39 ~~l~G~nGsGKST 51 (280)
T PRK13633 39 LVILGRNGSGKST 51 (280)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 211
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=39.41 E-value=12 Score=28.21 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+|.||.|||=
T Consensus 37 ~i~G~nGsGKST 48 (225)
T PRK10247 37 LITGPSGCGKST 48 (225)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 212
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=39.25 E-value=11 Score=34.60 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=12.1
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
|=.||.||+|||-+.
T Consensus 38 lgIvGESGsGKSt~a 52 (539)
T COG1123 38 LGIVGESGSGKSTLA 52 (539)
T ss_pred EEEEcCCCCCHHHHH
Confidence 457999999999653
No 213
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.18 E-value=12 Score=29.74 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=10.4
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
=++|.||.|||=-
T Consensus 37 ~i~G~nGaGKSTL 49 (287)
T PRK13637 37 GLIGHTGSGKSTL 49 (287)
T ss_pred EEECCCCCcHHHH
Confidence 4689999999843
No 214
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.16 E-value=12 Score=28.37 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|+||.|||=
T Consensus 28 ~~i~G~nG~GKSt 40 (235)
T cd03299 28 FVILGPTGSGKSV 40 (235)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999984
No 215
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=39.10 E-value=11 Score=26.08 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=10.6
Q ss_pred cceeeeeccCCCcceee
Q psy17338 106 NDLRFVGRSGREAHNNK 122 (130)
Q Consensus 106 NDLRFVGRSGRGKsFtl 122 (130)
+=+=.+|-+|.|||.-+
T Consensus 25 ~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLL 41 (185)
T ss_dssp --EEE-B-TTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 44567899999999754
No 216
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=39.06 E-value=12 Score=27.00 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=10.4
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.-++|++|.|||
T Consensus 44 I~iiG~~g~GKS 55 (204)
T cd01878 44 VALVGYTNAGKS 55 (204)
T ss_pred EEEECCCCCCHH
Confidence 457899999997
No 217
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=39.03 E-value=12 Score=29.07 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 30 ~~i~G~nGsGKST 42 (255)
T PRK11248 30 LVVLGPSGCGKTT 42 (255)
T ss_pred EEEECCCCCCHHH
Confidence 4478999999984
No 218
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.00 E-value=12 Score=28.49 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=10.2
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+-.+|.||.|||
T Consensus 33 ~~i~G~nGsGKS 44 (252)
T PRK14256 33 TAIIGPSGCGKS 44 (252)
T ss_pred EEEECCCCCCHH
Confidence 457899999998
No 219
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.93 E-value=12 Score=28.74 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 42 ~i~G~nGsGKST 53 (258)
T PRK14268 42 ALIGPSGCGKST 53 (258)
T ss_pred EEECCCCCCHHH
Confidence 368999999984
No 220
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=38.79 E-value=12 Score=29.77 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=11.1
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=++|.||.|||=.
T Consensus 33 ~~l~G~NGaGKSTL 46 (303)
T TIGR01288 33 FGLLGPNGAGKSTI 46 (303)
T ss_pred EEEECCCCCCHHHH
Confidence 34789999999843
No 221
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=38.74 E-value=13 Score=27.07 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||.|||=
T Consensus 30 ~~i~G~nGsGKST 42 (166)
T cd03223 30 LLITGPSGTGKSS 42 (166)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 222
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=38.69 E-value=12 Score=30.83 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=11.1
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=+||.||.|||=-
T Consensus 50 ~~lvG~sGsGKSTL 63 (331)
T PRK15079 50 LGVVGESGCGKSTF 63 (331)
T ss_pred EEEECCCCCCHHHH
Confidence 44789999999843
No 223
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.63 E-value=13 Score=28.40 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=9.6
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
.+|.||.|||=
T Consensus 36 I~G~nGsGKST 46 (251)
T PRK14244 36 FIGPSGCGKST 46 (251)
T ss_pred EECCCCCCHHH
Confidence 68999999984
No 224
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.39 E-value=13 Score=27.80 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 37 ~i~G~nGsGKST 48 (202)
T cd03233 37 LVLGRPGSGCST 48 (202)
T ss_pred EEECCCCCCHHH
Confidence 368999999984
No 225
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.22 E-value=13 Score=29.26 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=11.3
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+-.+|+||.|||=-
T Consensus 49 ~~IiG~nGsGKSTL 62 (274)
T PRK14265 49 IAFIGPSGCGKSTL 62 (274)
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999843
No 226
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=38.18 E-value=12 Score=30.64 Aligned_cols=13 Identities=31% Similarity=0.325 Sum_probs=10.4
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
=.||.||.|||=-
T Consensus 45 ~IvG~sGsGKSTL 57 (327)
T PRK11308 45 AVVGESGCGKSTL 57 (327)
T ss_pred EEECCCCCcHHHH
Confidence 4689999999843
No 227
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=38.17 E-value=13 Score=27.51 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=9.8
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 34 ~i~G~nGsGKST 45 (221)
T cd03244 34 GIVGRTGSGKSS 45 (221)
T ss_pred EEECCCCCCHHH
Confidence 357999999983
No 228
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=38.17 E-value=13 Score=27.76 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=10.3
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 34 ~~I~G~nGsGKSt 46 (220)
T TIGR02982 34 VILTGPSGSGKTT 46 (220)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 229
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.09 E-value=13 Score=28.17 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 30 ~~i~G~nGsGKST 42 (242)
T cd03295 30 LVLIGPSGSGKTT 42 (242)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 230
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=38.01 E-value=13 Score=29.02 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 33 ~~I~G~NGsGKST 45 (251)
T PRK09544 33 LTLLGPNGAGKST 45 (251)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 231
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=37.97 E-value=22 Score=26.93 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=12.6
Q ss_pred eeeeccCCCcceeeCC
Q psy17338 109 RFVGRSGREAHNNKAP 124 (130)
Q Consensus 109 RFVGRSGRGKsFtls~ 124 (130)
-|+|++|.|||--|..
T Consensus 25 ~i~G~NGsGKStll~a 40 (198)
T cd03276 25 FIVGNNGSGKSAILTA 40 (198)
T ss_pred EEECCCCCcHHHHHHH
Confidence 4899999999965543
No 232
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=37.88 E-value=13 Score=31.15 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=11.0
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||.|||=
T Consensus 34 ~gIiG~sGaGKST 46 (343)
T TIGR02314 34 YGVIGASGAGKST 46 (343)
T ss_pred EEEECCCCCCHHH
Confidence 5579999999984
No 233
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=37.76 E-value=13 Score=31.88 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=10.1
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|+||.|||=
T Consensus 39 ~iiG~nGsGKST 50 (529)
T PRK15134 39 ALVGESGSGKSV 50 (529)
T ss_pred EEECCCCCcHHH
Confidence 468999999983
No 234
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=37.68 E-value=16 Score=29.56 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=12.0
Q ss_pred eeccCCCcceeeCC
Q psy17338 111 VGRSGREAHNNKAP 124 (130)
Q Consensus 111 VGRSGRGKsFtls~ 124 (130)
.|-+|.||+||+.-
T Consensus 80 yG~tgSGKT~T~~G 93 (321)
T cd01374 80 YGQTSSGKTFTMSG 93 (321)
T ss_pred ecCCCCCCceeccC
Confidence 38899999999964
No 235
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.67 E-value=13 Score=28.10 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=10.2
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 34 ~i~G~nGsGKST 45 (252)
T PRK14272 34 ALIGPSGCGKTT 45 (252)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 236
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=37.48 E-value=13 Score=28.96 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+|.||.|||=
T Consensus 37 ~l~G~nGsGKST 48 (272)
T PRK15056 37 ALVGVNGSGKST 48 (272)
T ss_pred EEECCCCCCHHH
Confidence 368999999983
No 237
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=37.43 E-value=13 Score=27.64 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=10.5
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (223)
T TIGR03740 29 YGLLGPNGAGKST 41 (223)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999984
No 238
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.40 E-value=13 Score=29.23 Aligned_cols=13 Identities=15% Similarity=0.463 Sum_probs=10.4
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
=.+|.||.|||=-
T Consensus 37 ~i~G~nGsGKSTL 49 (279)
T PRK13650 37 SIIGHNGSGKSTT 49 (279)
T ss_pred EEECCCCCCHHHH
Confidence 4689999999843
No 239
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=37.29 E-value=13 Score=28.84 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+|.||.|||=
T Consensus 49 ~i~G~nGsGKST 60 (267)
T PRK14235 49 AFIGPSGCGKST 60 (267)
T ss_pred EEECCCCCCHHH
Confidence 368999999984
No 240
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=37.17 E-value=14 Score=28.83 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=10.0
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=.+|.||.|||
T Consensus 49 ~~I~G~nGsGKS 60 (267)
T PRK14237 49 TALIGPSGSGKS 60 (267)
T ss_pred EEEECCCCCCHH
Confidence 346899999998
No 241
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.97 E-value=14 Score=28.93 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=10.5
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
=.+|.||.|||=-
T Consensus 43 ~l~G~nGsGKSTL 55 (269)
T PRK14259 43 ALIGPSGCGKSTV 55 (269)
T ss_pred EEECCCCCCHHHH
Confidence 4689999999843
No 242
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=36.93 E-value=14 Score=28.96 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=9.8
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=++|.||.|||=
T Consensus 29 ~i~G~NGsGKST 40 (246)
T cd03237 29 GILGPNGIGKTT 40 (246)
T ss_pred EEECCCCCCHHH
Confidence 368999999984
No 243
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=36.91 E-value=14 Score=27.17 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=10.3
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 29 ~~i~G~nGsGKST 41 (208)
T cd03268 29 YGFLGPNGAGKTT 41 (208)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 244
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=36.90 E-value=14 Score=32.10 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
.=+||.||.|||=
T Consensus 344 ~~ivG~sGsGKST 356 (569)
T PRK10789 344 LGICGPTGSGKST 356 (569)
T ss_pred EEEECCCCCCHHH
Confidence 3469999999983
No 245
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=36.88 E-value=13 Score=30.49 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=10.2
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 35 ~iiG~nGsGKST 46 (343)
T PRK11153 35 GVIGASGAGKST 46 (343)
T ss_pred EEECCCCCcHHH
Confidence 468999999983
No 246
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.81 E-value=14 Score=28.04 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+|+||.|||=
T Consensus 33 ~i~G~nGsGKST 44 (250)
T PRK14266 33 ALIGPSGCGKST 44 (250)
T ss_pred EEECCCCCCHHH
Confidence 468999999983
No 247
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.80 E-value=13 Score=29.47 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=++|.||.|||=
T Consensus 36 ~i~G~nGsGKST 47 (288)
T PRK13643 36 ALIGHTGSGKST 47 (288)
T ss_pred EEECCCCChHHH
Confidence 458999999983
No 248
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=36.77 E-value=17 Score=29.94 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=12.0
Q ss_pred eeccCCCcceeeCC
Q psy17338 111 VGRSGREAHNNKAP 124 (130)
Q Consensus 111 VGRSGRGKsFtls~ 124 (130)
.|-+|.||+||+.-
T Consensus 95 yGqtGSGKT~Tm~G 108 (356)
T cd01365 95 YGQTGSGKSYTMMG 108 (356)
T ss_pred ecCCCCCCeEEecC
Confidence 48899999999964
No 249
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=36.76 E-value=15 Score=30.72 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=24.3
Q ss_pred EEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCcc
Q psy17338 76 IVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 76 ~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKs 119 (130)
.+.++|-+.++ ..||.+......+. .++=|||+||.|||
T Consensus 130 i~~vSAk~g~g-v~eL~~~l~~~~~~----~~v~~vG~~nvGKS 168 (360)
T TIGR03597 130 IILVSAKKGNG-IDELLDKIKKARNK----KDVYVVGVTNVGKS 168 (360)
T ss_pred EEEecCCCCCC-HHHHHHHHHHHhCC----CeEEEECCCCCCHH
Confidence 45677777666 33444433222111 47889999999997
No 250
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=36.70 E-value=14 Score=28.19 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-+.|.||.|||-
T Consensus 36 igi~G~~GsGKTT 48 (229)
T PRK09270 36 VGIAGPPGAGKST 48 (229)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 251
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=36.67 E-value=14 Score=27.43 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=10.3
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+-.+|.||.|||
T Consensus 27 ~~i~G~nGsGKS 38 (213)
T TIGR01277 27 VAIMGPSGAGKS 38 (213)
T ss_pred EEEECCCCCCHH
Confidence 457899999997
No 252
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=36.65 E-value=14 Score=32.81 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=10.3
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.-.||+||.|||
T Consensus 486 vaivG~sGsGKS 497 (694)
T TIGR01846 486 IGIVGPSGSGKS 497 (694)
T ss_pred EEEECCCCCCHH
Confidence 347999999998
No 253
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.49 E-value=15 Score=27.14 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=10.5
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
-.+|.||.|||=-
T Consensus 37 ~l~G~nGsGKSTL 49 (192)
T cd03232 37 ALMGESGAGKTTL 49 (192)
T ss_pred EEECCCCCCHHHH
Confidence 4689999999843
No 254
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=36.48 E-value=14 Score=29.21 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 29 ~~IvG~nGsGKST 41 (255)
T cd03236 29 LGLVGPNGIGKST 41 (255)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999984
No 255
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.47 E-value=14 Score=29.23 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=10.8
Q ss_pred eeeeccCCCcceee
Q psy17338 109 RFVGRSGREAHNNK 122 (130)
Q Consensus 109 RFVGRSGRGKsFtl 122 (130)
=++|+||.|||=-|
T Consensus 37 ~iiG~NGaGKSTLl 50 (287)
T PRK13641 37 ALVGHTGSGKSTLM 50 (287)
T ss_pred EEECCCCCCHHHHH
Confidence 36899999998433
No 256
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=36.39 E-value=14 Score=27.25 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=11.0
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+-.+|.||.|||=-
T Consensus 33 ~~i~G~nGsGKSTL 46 (220)
T cd03245 33 VAIIGRVGSGKSTL 46 (220)
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999843
No 257
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=36.35 E-value=14 Score=32.14 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=9.8
Q ss_pred eeeeccCCCcc
Q psy17338 109 RFVGRSGREAH 119 (130)
Q Consensus 109 RFVGRSGRGKs 119 (130)
=.||.||.|||
T Consensus 370 aivG~sGsGKS 380 (574)
T PRK11160 370 ALLGRTGCGKS 380 (574)
T ss_pred EEECCCCCCHH
Confidence 46999999998
No 258
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=36.19 E-value=14 Score=32.29 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=9.8
Q ss_pred eeeeccCCCcc
Q psy17338 109 RFVGRSGREAH 119 (130)
Q Consensus 109 RFVGRSGRGKs 119 (130)
=.+|.||.|||
T Consensus 365 ~ivG~sGsGKS 375 (585)
T TIGR01192 365 AIVGPTGAGKT 375 (585)
T ss_pred EEECCCCCCHH
Confidence 46899999998
No 259
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=36.11 E-value=15 Score=27.72 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 35 ~i~G~nGsGKST 46 (237)
T PRK11614 35 TLIGANGAGKTT 46 (237)
T ss_pred EEECCCCCCHHH
Confidence 368999999983
No 260
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=36.10 E-value=14 Score=29.92 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=11.1
Q ss_pred eeeeccCCCcceee
Q psy17338 109 RFVGRSGREAHNNK 122 (130)
Q Consensus 109 RFVGRSGRGKsFtl 122 (130)
=|+|++|.|||=.|
T Consensus 35 gllG~NGAGKTTll 48 (293)
T COG1131 35 GLLGPNGAGKTTLL 48 (293)
T ss_pred EEECCCCCCHHHHH
Confidence 36899999998544
No 261
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=36.03 E-value=16 Score=27.96 Aligned_cols=13 Identities=31% Similarity=0.887 Sum_probs=10.6
Q ss_pred CceEeecCCCcccc
Q psy17338 42 PHVVCTVLPTHWRS 55 (130)
Q Consensus 42 P~~lCs~LP~HWRs 55 (130)
=.|+||. |.||+-
T Consensus 106 Y~f~CSF-PGH~~~ 118 (125)
T TIGR02695 106 YTFFCSF-PGHWAM 118 (125)
T ss_pred ceEEEcC-CCcHHh
Confidence 4589998 999973
No 262
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.00 E-value=15 Score=28.61 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 39 ~I~G~nGsGKST 50 (269)
T PRK13648 39 SIVGHNGSGKST 50 (269)
T ss_pred EEECCCCCCHHH
Confidence 368999999983
No 263
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=35.80 E-value=18 Score=29.21 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=12.2
Q ss_pred eeccCCCcceeeCCC
Q psy17338 111 VGRSGREAHNNKAPD 125 (130)
Q Consensus 111 VGRSGRGKsFtls~~ 125 (130)
.|-+|.||+||+--.
T Consensus 83 yG~tgSGKT~Tm~G~ 97 (325)
T cd01369 83 YGQTGSGKTYTMEGP 97 (325)
T ss_pred eCCCCCCceEEecCC
Confidence 488999999998543
No 264
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=35.75 E-value=15 Score=26.96 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=10.7
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=.+|+||.|||=-
T Consensus 34 ~~i~G~nG~GKSTL 47 (204)
T cd03250 34 VAIVGPVGSGKSSL 47 (204)
T ss_pred EEEECCCCCCHHHH
Confidence 34689999999843
No 265
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.71 E-value=15 Score=28.24 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=9.8
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 42 ~l~G~nGsGKST 53 (259)
T PRK14274 42 AIIGPSGCGKST 53 (259)
T ss_pred EEECCCCCCHHH
Confidence 358999999983
No 266
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=35.67 E-value=15 Score=28.30 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=11.0
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||.|||=
T Consensus 25 ~~l~G~nGsGKST 37 (248)
T PRK03695 25 LHLVGPNGAGKST 37 (248)
T ss_pred EEEECCCCCCHHH
Confidence 5589999999983
No 267
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=35.62 E-value=15 Score=31.55 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=10.2
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.-.||.||.|||
T Consensus 347 ~~ivG~sGsGKS 358 (544)
T TIGR01842 347 LAIIGPSGSGKS 358 (544)
T ss_pred EEEECCCCCCHH
Confidence 346999999998
No 268
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=35.31 E-value=10 Score=33.02 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=20.0
Q ss_pred cCCCccccCCCCCcce---EEEEeeeC
Q psy17338 48 VLPTHWRSNKTLPVAF---KVVALGDV 71 (130)
Q Consensus 48 ~LP~HWRsNKtLP~~F---kVvaLg~V 71 (130)
-.|+||||.+||..-+ +|.++-.|
T Consensus 89 ~~~s~~~~~~sl~~~l~~~~ipgi~gv 115 (382)
T CHL00197 89 KSSSNWRQQESLVSYLQRHKIPFIFGI 115 (382)
T ss_pred CCCCcccccCCHHHHHHHCCCceEeCC
Confidence 4799999999999765 78888765
No 269
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.11 E-value=15 Score=28.83 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=11.0
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=++|.+|.|||=-
T Consensus 31 ~~i~G~nGsGKSTL 44 (274)
T PRK13644 31 IGIIGKNGSGKSTL 44 (274)
T ss_pred EEEECCCCCCHHHH
Confidence 34789999999843
No 270
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=35.01 E-value=15 Score=30.63 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=12.2
Q ss_pred eeeeeccCCCcceeeC
Q psy17338 108 LRFVGRSGREAHNNKA 123 (130)
Q Consensus 108 LRFVGRSGRGKsFtls 123 (130)
+=++|.||.|||=.|.
T Consensus 33 ~~l~GpsGsGKSTLLr 48 (353)
T TIGR03265 33 VCLLGPSGCGKTTLLR 48 (353)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3468999999986543
No 271
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=34.91 E-value=15 Score=33.12 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=12.5
Q ss_pred eeeeeccCCCcceeeCC
Q psy17338 108 LRFVGRSGREAHNNKAP 124 (130)
Q Consensus 108 LRFVGRSGRGKsFtls~ 124 (130)
.=.|||.|+|||=-|.+
T Consensus 32 iGLvG~NGaGKSTLLki 48 (530)
T COG0488 32 IGLVGRNGAGKSTLLKI 48 (530)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34799999999954443
No 272
>PRK09087 hypothetical protein; Validated
Probab=34.84 E-value=16 Score=28.62 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=13.5
Q ss_pred cc-eeeeeccCCCcceee
Q psy17338 106 ND-LRFVGRSGREAHNNK 122 (130)
Q Consensus 106 ND-LRFVGRSGRGKsFtl 122 (130)
|. +=++|.||.|||--+
T Consensus 44 ~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 44 789999999998533
No 273
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.69 E-value=18 Score=28.46 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=11.4
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+-++|.||.|||=-
T Consensus 36 ~~I~G~nGsGKSTL 49 (277)
T PRK13642 36 VSIIGQNGSGKSTT 49 (277)
T ss_pred EEEECCCCCcHHHH
Confidence 56799999999843
No 274
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=34.66 E-value=16 Score=31.29 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|.||+|||=
T Consensus 30 ~~liG~NGsGKST 42 (530)
T PRK15064 30 YGLIGANGCGKST 42 (530)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 275
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=34.57 E-value=16 Score=27.43 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 31 ~~i~G~nGsGKST 43 (237)
T cd03252 31 VGIVGRSGSGKST 43 (237)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 276
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=34.57 E-value=15 Score=30.62 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=11.5
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
+=.+|.||.|||=-|
T Consensus 32 ~~l~G~nGsGKSTLL 46 (369)
T PRK11000 32 VVFVGPSGCGKSTLL 46 (369)
T ss_pred EEEECCCCCcHHHHH
Confidence 446899999998443
No 277
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=34.34 E-value=16 Score=26.39 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||.|||=
T Consensus 31 ~~i~G~nGsGKSt 43 (173)
T cd03246 31 LAIIGPSGSGKST 43 (173)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 278
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=34.24 E-value=12 Score=28.16 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=12.5
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
+=++|.+|.|||..+
T Consensus 46 ~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 46 ILITGEVGAGKTTLI 60 (269)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567999999999754
No 279
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=34.23 E-value=69 Score=27.15 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=51.6
Q ss_pred hHHHHHhhcCCCCccccCCCceEeecCCCccccCCCCCcceEEEEe-eeCCCCeEEEEeecCCCccccc-cccceeeecc
Q psy17338 23 RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVAL-GDVMDGTIVTIRAGNDENYCGE-LRNCTAVMKN 100 (130)
Q Consensus 23 r~l~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaL-g~V~DGT~Vtv~AGNDEn~~aE-LRN~~avmkn 100 (130)
+.+.+.++...+.-+-..+|.+-++ ||. ...++-+. .++..|..++|+--....+.-+ |-..-. |..
T Consensus 63 ~~~i~~lA~~~~~~~~~~~P~l~~~-Lp~---------~g~Ri~~~~pp~~~~~~~~IRk~~~~~~tl~~lv~~g~-~~~ 131 (323)
T PRK13833 63 EVVIGSVAHALQSEADDERPIISGE-LPI---------GGHRFEGLLPPVVSGPAFTIRRRASRLIPLDDYVTSKI-MTE 131 (323)
T ss_pred HHHHHHHHHHhCCccCCCCceEEEE-eCC---------CCEEEEEEcCCCCCCceEEEECcCCCCCCHHHHHHcCC-CCH
Confidence 3455677777777788999985554 552 23455543 4566688999986554443222 111100 111
Q ss_pred ce---------eeecceeeeeccCCCcceee
Q psy17338 101 QV---------AKFNDLRFVGRSGREAHNNK 122 (130)
Q Consensus 101 qv---------A~FNDLRFVGRSGRGKsFtl 122 (130)
.. ++-| +=+.|..|.||+-.+
T Consensus 132 ~~~~~L~~~v~~~~n-ilI~G~tGSGKTTll 161 (323)
T PRK13833 132 AQASVIRSAIDSRLN-IVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHHHHcCCe-EEEECCCCCCHHHHH
Confidence 11 2445 459999999998655
No 280
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=34.16 E-value=16 Score=27.95 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||.|||=
T Consensus 30 ~~i~G~nGsGKST 42 (256)
T TIGR03873 30 TGLLGPNGSGKST 42 (256)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999983
No 281
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=34.15 E-value=17 Score=23.13 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=9.2
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
+.|.+|.|||-
T Consensus 4 i~G~~gsGKst 14 (69)
T cd02019 4 ITGGSGSGKST 14 (69)
T ss_pred EECCCCCCHHH
Confidence 57999999974
No 282
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=33.98 E-value=20 Score=26.07 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=24.5
Q ss_pred eEEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCcc
Q psy17338 75 TIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 75 T~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKs 119 (130)
..+.++|-+.++ ..||.+...-+ ..+=..+-|||.||.|||
T Consensus 101 ~i~~vSA~~~~g-i~eL~~~l~~~---l~~~~~~~~~G~~nvGKS 141 (190)
T cd01855 101 DVILISAKKGWG-VEELINAIKKL---AKKGGDVYVVGATNVGKS 141 (190)
T ss_pred cEEEEECCCCCC-HHHHHHHHHHH---hhcCCcEEEEcCCCCCHH
Confidence 356677777665 34554333211 111135789999999998
No 283
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=33.93 E-value=22 Score=28.60 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=12.2
Q ss_pred eeccCCCcceeeCC
Q psy17338 111 VGRSGREAHNNKAP 124 (130)
Q Consensus 111 VGRSGRGKsFtls~ 124 (130)
.|-+|.||+|+|--
T Consensus 86 yG~tgSGKT~tl~G 99 (335)
T smart00129 86 YGQTGSGKTYTMSG 99 (335)
T ss_pred eCCCCCCCceEecC
Confidence 58999999999963
No 284
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=33.88 E-value=16 Score=28.90 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=10.2
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-++|.+|.|||=
T Consensus 54 ~liG~NGsGKST 65 (264)
T PRK13546 54 GLVGINGSGKST 65 (264)
T ss_pred EEECCCCCCHHH
Confidence 478999999984
No 285
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=33.84 E-value=16 Score=29.05 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=11.7
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
+=++|.||.|||=.+
T Consensus 22 ~~l~G~NGaGKSTLl 36 (302)
T TIGR01188 22 FGFLGPNGAGKTTTI 36 (302)
T ss_pred EEEECCCCCCHHHHH
Confidence 347899999998544
No 286
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=33.82 E-value=16 Score=31.26 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=10.4
Q ss_pred eeeccCCCccee
Q psy17338 110 FVGRSGREAHNN 121 (130)
Q Consensus 110 FVGRSGRGKsFt 121 (130)
++|++|.|||=+
T Consensus 43 lvGktGVGKSSl 54 (313)
T TIGR00991 43 VMGKGGVGKSST 54 (313)
T ss_pred EECCCCCCHHHH
Confidence 789999999844
No 287
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=33.80 E-value=67 Score=24.64 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=32.0
Q ss_pred eeCCCCeEEEEeecCCCcccc-------------ccc-cceeeeccce-eeecceeeeeccCCC
Q psy17338 69 GDVMDGTIVTIRAGNDENYCG-------------ELR-NCTAVMKNQV-AKFNDLRFVGRSGRE 117 (130)
Q Consensus 69 g~V~DGT~Vtv~AGNDEn~~a-------------ELR-N~~avmknqv-A~FNDLRFVGRSGRG 117 (130)
.+...++.|.+.+||-+.... .++ -...++.|-. -++++.||++-+|-.
T Consensus 76 ~~L~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~ 139 (243)
T cd07386 76 SDVPSHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFLPGNVEFVSNPALVKIHGVDVLIYHGRS 139 (243)
T ss_pred HhcccCCeEEEeCCCCCcccccCCCCCccHHHHhhcCCCceEEeCCCCEEEECCEEEEEECCCC
Confidence 577788999999999887532 221 1244555543 345788888776643
No 288
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=33.80 E-value=17 Score=31.61 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|+||+|||=
T Consensus 37 ~iiG~NGsGKST 48 (556)
T PRK11819 37 GVLGLNGAGKST 48 (556)
T ss_pred EEECCCCCCHHH
Confidence 368999999984
No 289
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=33.72 E-value=17 Score=28.10 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=9.4
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
.+|.||.|||=
T Consensus 52 i~G~nGsGKST 62 (257)
T cd03288 52 ICGRTGSGKSS 62 (257)
T ss_pred EECCCCCCHHH
Confidence 57999999983
No 290
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=33.64 E-value=13 Score=35.01 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=25.1
Q ss_pred hhhhHHHHHhhcCCCCccccC---CC-ceEeecCCCccccCC
Q psy17338 20 LAERTLDSLLAEHPGELTRTG---CP-HVVCTVLPTHWRSNK 57 (130)
Q Consensus 20 ~~er~l~~~l~~~~gelv~T~---sP-~~lCs~LP~HWRsNK 57 (130)
..++.+..++....-.+++-. .| +-+.+.||-+|..+-
T Consensus 377 ~~~~~v~~~~~~~g~~~~~~~~~~~~l~~~l~~LP~~~~~~~ 418 (893)
T TIGR03744 377 RRSNELSAVLLGAGLQPVRPEDEVAPLNSYLRWLPMNFNPDL 418 (893)
T ss_pred HHHHHHHHHHHHCCCEEEecccchhhHHHHHHhCCCCcCccc
Confidence 366677788888866776642 22 246678898887654
No 291
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=33.60 E-value=17 Score=28.42 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|+||.|||=
T Consensus 41 ~~i~G~nGsGKST 53 (268)
T PRK10419 41 VALLGRSGCGKST 53 (268)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 292
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.51 E-value=17 Score=29.21 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=9.9
Q ss_pred eeeccCCCccee
Q psy17338 110 FVGRSGREAHNN 121 (130)
Q Consensus 110 FVGRSGRGKsFt 121 (130)
.+|+||.|||=-
T Consensus 76 IvG~nGsGKSTL 87 (305)
T PRK14264 76 LIGPSGCGKSTF 87 (305)
T ss_pred EECCCCCCHHHH
Confidence 589999999843
No 293
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.45 E-value=17 Score=28.13 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|+||.|||=
T Consensus 36 ~~I~G~nGsGKST 48 (261)
T PRK14258 36 TAIIGPSGCGKST 48 (261)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 294
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=33.25 E-value=22 Score=29.05 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=12.0
Q ss_pred eeccCCCcceeeCC
Q psy17338 111 VGRSGREAHNNKAP 124 (130)
Q Consensus 111 VGRSGRGKsFtls~ 124 (130)
.|-+|.||+||+.-
T Consensus 91 yGqtGSGKTyTm~G 104 (322)
T cd01367 91 YGQTGSGKTYTMLG 104 (322)
T ss_pred ccCCCCCCceEecC
Confidence 38899999999963
No 295
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.18 E-value=17 Score=28.94 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=++|.||.|||=
T Consensus 36 ~~i~G~nGsGKST 48 (290)
T PRK13634 36 VAIIGHTGSGKST 48 (290)
T ss_pred EEEECCCCCcHHH
Confidence 3468999999983
No 296
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=33.05 E-value=17 Score=29.49 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||.|||=
T Consensus 36 v~iiG~nGsGKST 48 (305)
T PRK13651 36 IAIIGQTGSGKTT 48 (305)
T ss_pred EEEECCCCCcHHH
Confidence 4578999999984
No 297
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=33.03 E-value=17 Score=27.63 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=9.7
Q ss_pred eeeccCCCccee
Q psy17338 110 FVGRSGREAHNN 121 (130)
Q Consensus 110 FVGRSGRGKsFt 121 (130)
.+|.||.|||=-
T Consensus 52 i~G~NGsGKSTL 63 (236)
T cd03267 52 FIGPNGAGKTTT 63 (236)
T ss_pred EECCCCCCHHHH
Confidence 589999999843
No 298
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=33.00 E-value=22 Score=29.30 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=12.1
Q ss_pred eeccCCCcceeeCC
Q psy17338 111 VGRSGREAHNNKAP 124 (130)
Q Consensus 111 VGRSGRGKsFtls~ 124 (130)
.|-+|.||+||+.-
T Consensus 94 yGqtGSGKTyTm~G 107 (338)
T cd01370 94 YGATGAGKTHTMLG 107 (338)
T ss_pred eCCCCCCCeEEEcC
Confidence 48899999999854
No 299
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.94 E-value=17 Score=27.09 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.0
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=.+|.+|.|||
T Consensus 30 ~~l~G~nGsGKS 41 (236)
T cd03253 30 VAIVGPSGSGKS 41 (236)
T ss_pred EEEECCCCCCHH
Confidence 346899999998
No 300
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=32.87 E-value=18 Score=28.96 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=17.9
Q ss_pred eecceeeeeccCCCcceeeCCC
Q psy17338 104 KFNDLRFVGRSGREAHNNKAPD 125 (130)
Q Consensus 104 ~FNDLRFVGRSGRGKsFtls~~ 125 (130)
+-+.|-|.|-+|.||+|=...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai 125 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAI 125 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHH
Confidence 6678999999999999865443
No 301
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=32.81 E-value=12 Score=32.17 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=19.8
Q ss_pred cCCCccccCCCCCcce---EEEEeeeC
Q psy17338 48 VLPTHWRSNKTLPVAF---KVVALGDV 71 (130)
Q Consensus 48 ~LP~HWRsNKtLP~~F---kVvaLg~V 71 (130)
--|+||||.+||..-+ +|.++..|
T Consensus 83 ~~~s~~~~~~~l~~~l~~~~i~gi~gv 109 (358)
T TIGR01368 83 DRYSNWRATESLDQFLKRHGIPGIYGV 109 (358)
T ss_pred CCCCcccccCCHHHHHHHCCCceEeCC
Confidence 4699999999998665 78888766
No 302
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=32.68 E-value=18 Score=28.28 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=9.8
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 55 ~I~G~nGsGKST 66 (272)
T PRK14236 55 AFIGPSGCGKST 66 (272)
T ss_pred EEECCCCCCHHH
Confidence 358999999983
No 303
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.65 E-value=18 Score=27.46 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=10.5
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
-.+|.||.|||=-
T Consensus 33 ~i~G~nGsGKSTL 45 (249)
T PRK14253 33 ALIGPSGCGKSTL 45 (249)
T ss_pred EEECCCCCCHHHH
Confidence 4689999999843
No 304
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=32.63 E-value=23 Score=33.03 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=11.5
Q ss_pred ceeeeeccCCCcc
Q psy17338 107 DLRFVGRSGREAH 119 (130)
Q Consensus 107 DLRFVGRSGRGKs 119 (130)
-|=.||.||+|||
T Consensus 315 TlGlVGESGSGKs 327 (534)
T COG4172 315 TLGLVGESGSGKS 327 (534)
T ss_pred eEEEEecCCCCcc
Confidence 4678999999998
No 305
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=32.59 E-value=17 Score=36.22 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=9.9
Q ss_pred eeeeccCCCcc
Q psy17338 109 RFVGRSGREAH 119 (130)
Q Consensus 109 RFVGRSGRGKs 119 (130)
=+||.||+|||
T Consensus 1198 AIVG~SGsGKS 1208 (1466)
T PTZ00265 1198 AIVGETGSGKS 1208 (1466)
T ss_pred EEECCCCCCHH
Confidence 47999999998
No 306
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=32.58 E-value=19 Score=27.00 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=13.2
Q ss_pred eeeccCCCcceeeCCCC
Q psy17338 110 FVGRSGREAHNNKAPDS 126 (130)
Q Consensus 110 FVGRSGRGKsFtls~~~ 126 (130)
++|+.|.|||=-|..+.
T Consensus 27 i~G~NGsGKSnil~Ai~ 43 (178)
T cd03239 27 IVGPNGSGKSNIVDAIC 43 (178)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 79999999986655443
No 307
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.52 E-value=18 Score=28.79 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=9.5
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
.+|+||.|||=
T Consensus 70 I~G~nGsGKST 80 (285)
T PRK14254 70 MIGPSGCGKST 80 (285)
T ss_pred EECCCCCCHHH
Confidence 57999999984
No 308
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.42 E-value=18 Score=29.65 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 55 ~~I~G~nGsGKST 67 (320)
T PRK13631 55 YFIIGNSGSGKST 67 (320)
T ss_pred EEEECCCCCCHHH
Confidence 5579999999984
No 309
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=32.36 E-value=23 Score=29.35 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=12.1
Q ss_pred eeccCCCcceeeCC
Q psy17338 111 VGRSGREAHNNKAP 124 (130)
Q Consensus 111 VGRSGRGKsFtls~ 124 (130)
.|-+|.||+||+.-
T Consensus 95 YGqtGSGKTyTm~G 108 (345)
T cd01368 95 YGVTNSGKTYTMQG 108 (345)
T ss_pred eCCCCCCCeEEecC
Confidence 48899999999964
No 310
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=32.32 E-value=18 Score=28.08 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 39 ~~i~G~nGsGKST 51 (264)
T PRK14243 39 TAFIGPSGCGKST 51 (264)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 311
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=32.30 E-value=18 Score=30.52 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 33 ~liG~nGsGKST 44 (490)
T PRK10938 33 AFVGANGSGKSA 44 (490)
T ss_pred EEECCCCCCHHH
Confidence 468999999983
No 312
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.29 E-value=18 Score=28.25 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=9.8
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 54 ~l~G~nGsGKST 65 (269)
T cd03294 54 VIMGLSGSGKST 65 (269)
T ss_pred EEECCCCCCHHH
Confidence 358999999983
No 313
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=32.23 E-value=17 Score=30.79 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=11.2
Q ss_pred eeeeccCCCcceee
Q psy17338 109 RFVGRSGREAHNNK 122 (130)
Q Consensus 109 RFVGRSGRGKsFtl 122 (130)
=++|.||.|||=.|
T Consensus 23 ~l~G~sGsGKSTLL 36 (363)
T TIGR01186 23 VIMGLSGSGKSTTV 36 (363)
T ss_pred EEECCCCChHHHHH
Confidence 47899999998544
No 314
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=32.17 E-value=14 Score=34.24 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=13.6
Q ss_pred eeeeeccCCCcceeeC
Q psy17338 108 LRFVGRSGREAHNNKA 123 (130)
Q Consensus 108 LRFVGRSGRGKsFtls 123 (130)
.-.+|.||.||||.+.
T Consensus 452 ~~I~G~sGsGKS~l~k 467 (844)
T PRK13721 452 MAVCGTSGAGKTGLIQ 467 (844)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 5678999999999763
No 315
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=32.12 E-value=9.5 Score=32.68 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=31.5
Q ss_pred ecCCCccccCCCCCcce---EEEEeeeCC----------CCeEE-EEeecCCCccccccccc
Q psy17338 47 TVLPTHWRSNKTLPVAF---KVVALGDVM----------DGTIV-TIRAGNDENYCGELRNC 94 (130)
Q Consensus 47 s~LP~HWRsNKtLP~~F---kVvaLg~V~----------DGT~V-tv~AGNDEn~~aELRN~ 94 (130)
+..|+||||.++|..-+ +|.++-.|- .|++- .|..++++...+++|..
T Consensus 84 ~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR~lt~~lR~~G~~~~~i~~~~~~~~~~~~~~~ 145 (354)
T PRK12838 84 SREGSHYRAKQSLDDFLKEWNIPGISGVDTRALVKHIREKGTMKASITTTDDAHAFDQIKAL 145 (354)
T ss_pred CCCCCcccccCCHHHHHHHCCCCcccCCCHHHHHHHHHHcCCceEEEecCCcHHHHHHHHhh
Confidence 45799999999998766 688876552 45543 34445555555555544
No 316
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=32.03 E-value=19 Score=27.34 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=12.5
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
|-|-|=||.||+|.-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 568999999999853
No 317
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.95 E-value=18 Score=28.56 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=10.9
Q ss_pred eeeeccCCCcceee
Q psy17338 109 RFVGRSGREAHNNK 122 (130)
Q Consensus 109 RFVGRSGRGKsFtl 122 (130)
=.+|.||.|||=-+
T Consensus 37 ~i~G~nGaGKSTLl 50 (279)
T PRK13635 37 AIVGHNGSGKSTLA 50 (279)
T ss_pred EEECCCCCcHHHHH
Confidence 46899999998443
No 318
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.66 E-value=65 Score=25.39 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=26.9
Q ss_pred CCCCcceE----EEEeeeCCCCeE--EEEeecCCCccc
Q psy17338 57 KTLPVAFK----VVALGDVMDGTI--VTIRAGNDENYC 88 (130)
Q Consensus 57 KtLP~~Fk----VvaLg~V~DGT~--Vtv~AGNDEn~~ 88 (130)
-.||..|| ||+-|...||+- -+|.|.-||+|-
T Consensus 91 GilPDlFrEGqgVVaeG~~~~g~F~A~~vLAKHde~Ym 128 (155)
T PRK13159 91 GILPDLFRDNQSVIANGRMQGGRFVANEVLAKHDETYM 128 (155)
T ss_pred cCCCccccCCCeEEEEEEEcCCEEEEeEEEecCCCcCC
Confidence 36888885 999998888874 489999999997
No 319
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=31.34 E-value=19 Score=30.66 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-.+|.||.|||=
T Consensus 35 ~l~G~nGsGKST 46 (506)
T PRK13549 35 SLCGENGAGKST 46 (506)
T ss_pred EEECCCCCCHHH
Confidence 468999999983
No 320
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=31.20 E-value=19 Score=30.44 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|+||.|||=
T Consensus 27 ~~liG~nGsGKST 39 (491)
T PRK10982 27 HALMGENGAGKST 39 (491)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999983
No 321
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=31.11 E-value=20 Score=30.71 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.3
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-|+|-||+|||=
T Consensus 37 AlIGPSGcGKST 48 (253)
T COG1117 37 ALIGPSGCGKST 48 (253)
T ss_pred EEECCCCcCHHH
Confidence 479999999984
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=31.02 E-value=19 Score=28.99 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|+||.|||=
T Consensus 66 ~~liG~NGsGKST 78 (282)
T cd03291 66 LAITGSTGSGKTS 78 (282)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999984
No 323
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.97 E-value=20 Score=28.32 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=9.4
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
.+|.||.|||=
T Consensus 52 I~G~nGsGKST 62 (276)
T PRK14271 52 LMGPTGSGKTT 62 (276)
T ss_pred EECCCCCCHHH
Confidence 57999999983
No 324
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.79 E-value=20 Score=28.45 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=9.5
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
.+|.||.|||=
T Consensus 70 l~G~nGsGKST 80 (286)
T PRK14275 70 IIGPSGCGKST 80 (286)
T ss_pred EECCCCCCHHH
Confidence 68999999983
No 325
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.77 E-value=20 Score=26.73 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.+|.|||=
T Consensus 31 ~~i~G~nGsGKST 43 (234)
T cd03251 31 VALVGPSGSGKST 43 (234)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 326
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=30.76 E-value=20 Score=30.34 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 30 ~~liG~nGsGKST 42 (500)
T TIGR02633 30 VGLCGENGAGKST 42 (500)
T ss_pred EEEECCCCCCHHH
Confidence 3478999999984
No 327
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=30.68 E-value=20 Score=29.94 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=11.7
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
+-.+|.||.|||=-|
T Consensus 31 ~~llGpsGsGKSTLL 45 (353)
T PRK10851 31 VALLGPSGSGKTTLL 45 (353)
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999998443
No 328
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=30.58 E-value=22 Score=30.76 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=12.5
Q ss_pred ceeeeeccCCCccee
Q psy17338 107 DLRFVGRSGREAHNN 121 (130)
Q Consensus 107 DLRFVGRSGRGKsFt 121 (130)
=|=.||-||+|||-+
T Consensus 33 ~lgiVGESGsGKS~~ 47 (316)
T COG0444 33 ILGIVGESGSGKSVL 47 (316)
T ss_pred EEEEEcCCCCCHHHH
Confidence 366899999999965
No 329
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=30.50 E-value=20 Score=29.99 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=12.1
Q ss_pred eeeeeccCCCcceeeC
Q psy17338 108 LRFVGRSGREAHNNKA 123 (130)
Q Consensus 108 LRFVGRSGRGKsFtls 123 (130)
+=.+|.||.|||=.|.
T Consensus 33 ~~llG~sGsGKSTLLr 48 (356)
T PRK11650 33 IVLVGPSGCGKSTLLR 48 (356)
T ss_pred EEEECCCCCcHHHHHH
Confidence 3468999999985543
No 330
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=30.31 E-value=20 Score=30.44 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=9.9
Q ss_pred eeeccCCCccee
Q psy17338 110 FVGRSGREAHNN 121 (130)
Q Consensus 110 FVGRSGRGKsFt 121 (130)
.+|.||.|||=-
T Consensus 36 liG~nGsGKSTL 47 (510)
T PRK09700 36 LLGENGAGKSTL 47 (510)
T ss_pred EECCCCCCHHHH
Confidence 589999999843
No 331
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=30.31 E-value=21 Score=26.41 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=11.6
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
+=++|.+|.||+=.
T Consensus 28 i~I~G~tGSGKTTl 41 (186)
T cd01130 28 ILISGGTGSGKTTL 41 (186)
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999843
No 332
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=30.26 E-value=20 Score=29.55 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 27 ~~l~G~nGsGKST 39 (352)
T PRK11144 27 TAIFGRSGAGKTS 39 (352)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 333
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=30.07 E-value=20 Score=29.93 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=11.6
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
+=++|.||.|||=.|
T Consensus 35 ~~llGpsGsGKSTLL 49 (351)
T PRK11432 35 VTLLGPSGCGKTTVL 49 (351)
T ss_pred EEEECCCCCcHHHHH
Confidence 346899999998544
No 334
>COG1162 Predicted GTPases [General function prediction only]
Probab=29.93 E-value=20 Score=30.73 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=9.7
Q ss_pred eeeeccCCCcc
Q psy17338 109 RFVGRSGREAH 119 (130)
Q Consensus 109 RFVGRSGRGKs 119 (130)
=|+|-||.|||
T Consensus 168 vl~GqSGVGKS 178 (301)
T COG1162 168 VLLGQSGVGKS 178 (301)
T ss_pred EEECCCCCcHH
Confidence 37999999998
No 335
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=29.91 E-value=18 Score=30.63 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=11.6
Q ss_pred eeeeeccCCCccee
Q psy17338 108 LRFVGRSGREAHNN 121 (130)
Q Consensus 108 LRFVGRSGRGKsFt 121 (130)
|=.||-||.|||..
T Consensus 42 ~glVGESG~GKSTl 55 (268)
T COG4608 42 LGLVGESGCGKSTL 55 (268)
T ss_pred EEEEecCCCCHHHH
Confidence 45699999999964
No 336
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.90 E-value=24 Score=27.53 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 37 ~~i~G~nGsGKST 49 (261)
T PRK14263 37 TGFIGPSGCGKST 49 (261)
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 337
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.89 E-value=21 Score=28.21 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 37 ~I~G~nGaGKST 48 (282)
T PRK13640 37 ALIGHNGSGKST 48 (282)
T ss_pred EEECCCCCcHHH
Confidence 468999999984
No 338
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=29.74 E-value=26 Score=28.24 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=12.5
Q ss_pred eeccCCCcceeeCCC
Q psy17338 111 VGRSGREAHNNKAPD 125 (130)
Q Consensus 111 VGRSGRGKsFtls~~ 125 (130)
.|-+|.||+||+.-.
T Consensus 84 yG~tgSGKT~tl~G~ 98 (329)
T cd01366 84 YGQTGSGKTYTMEGP 98 (329)
T ss_pred eCCCCCCCcEEecCC
Confidence 488999999999643
No 339
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=29.54 E-value=27 Score=28.77 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=12.5
Q ss_pred eeccCCCcceeeCCC
Q psy17338 111 VGRSGREAHNNKAPD 125 (130)
Q Consensus 111 VGRSGRGKsFtls~~ 125 (130)
.|-+|.||+||+.-+
T Consensus 81 YGqTGSGKTyTm~G~ 95 (337)
T cd01373 81 YGQTGSGKTYTMMGP 95 (337)
T ss_pred eCCCCCCceEEecCC
Confidence 488999999999653
No 340
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.53 E-value=23 Score=26.66 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=13.1
Q ss_pred cceeeeeccCCCccee
Q psy17338 106 NDLRFVGRSGREAHNN 121 (130)
Q Consensus 106 NDLRFVGRSGRGKsFt 121 (130)
.-|=|.|-+|.||++-
T Consensus 48 ~~l~l~G~~G~GKThL 63 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHL 63 (178)
T ss_dssp -EEEEEESTTSSHHHH
T ss_pred eEEEEEhhHhHHHHHH
Confidence 3488999999999974
No 341
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=29.51 E-value=21 Score=30.91 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=10.3
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
.-.||.||.|||
T Consensus 371 ~aivG~sGsGKS 382 (555)
T TIGR01194 371 VFIVGENGCGKS 382 (555)
T ss_pred EEEECCCCCCHH
Confidence 347999999998
No 342
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=29.35 E-value=29 Score=27.68 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=12.4
Q ss_pred eeccCCCcceeeCC
Q psy17338 111 VGRSGREAHNNKAP 124 (130)
Q Consensus 111 VGRSGRGKsFtls~ 124 (130)
.|-+|.||+||+--
T Consensus 85 yG~tgSGKT~tl~G 98 (328)
T cd00106 85 YGQTGSGKTYTMFG 98 (328)
T ss_pred ecCCCCCCeEEecC
Confidence 68899999999865
No 343
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=29.04 E-value=16 Score=33.64 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=23.5
Q ss_pred hhhHHHHHhhcCCCCcccc--CCCceEeecCCCccccCCC
Q psy17338 21 AERTLDSLLAEHPGELTRT--GCPHVVCTVLPTHWRSNKT 58 (130)
Q Consensus 21 ~er~l~~~l~~~~gelv~T--~sP~~lCs~LP~HWRsNKt 58 (130)
..+.+..+++...-.+++- ....-+.+.||.+|..|..
T Consensus 349 ~~~~v~~~l~~~g~~~~~e~~~~~~a~~a~lPg~~~~~~R 388 (811)
T PRK13873 349 KLRLVEKVIQGRGFTCIPETLNAVEAWLGSLPGHVYANVR 388 (811)
T ss_pred HHHHHHHHHHhCCcEEEEeccccHHHHHhhCCCCcccccc
Confidence 3455667777665444433 4455667889988876643
No 344
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=28.98 E-value=22 Score=29.29 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=10.2
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 27 ~l~G~nGsGKST 38 (354)
T TIGR02142 27 AIFGRSGSGKTT 38 (354)
T ss_pred EEECCCCCCHHH
Confidence 468999999984
No 345
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=28.82 E-value=22 Score=29.91 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=11.6
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
+=++|.||.|||=.|
T Consensus 34 ~~llGpsGsGKSTLL 48 (362)
T TIGR03258 34 LALIGKSGCGKTTLL 48 (362)
T ss_pred EEEECCCCCCHHHHH
Confidence 447899999998443
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=28.68 E-value=22 Score=31.55 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=10.6
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.||++|.|||=
T Consensus 32 v~LvG~NGsGKST 44 (635)
T PRK11147 32 VCLVGRNGAGKST 44 (635)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999984
No 347
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=28.54 E-value=27 Score=28.60 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=12.4
Q ss_pred eeccCCCcceeeCCC
Q psy17338 111 VGRSGREAHNNKAPD 125 (130)
Q Consensus 111 VGRSGRGKsFtls~~ 125 (130)
.|=+|.||+||+.-+
T Consensus 87 yG~tgSGKTyTm~G~ 101 (334)
T cd01375 87 YGQTGAGKTFTMTGG 101 (334)
T ss_pred ecCCCCCCeEEccCC
Confidence 477999999999653
No 348
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=28.54 E-value=23 Score=30.23 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=9.2
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
++|.||.|||=
T Consensus 315 l~G~NGsGKST 325 (520)
T TIGR03269 315 IVGTSGAGKTT 325 (520)
T ss_pred EECCCCCCHHH
Confidence 47999999983
No 349
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=28.52 E-value=23 Score=28.62 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.7
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
+=++|.+|.|||=.+
T Consensus 36 ~gllGpNGaGKSTLl 50 (306)
T PRK13537 36 FGLLGPNGAGKTTTL 50 (306)
T ss_pred EEEECCCCCCHHHHH
Confidence 357899999998443
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=28.38 E-value=23 Score=31.66 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.||++|.|||=
T Consensus 30 v~LvG~NGsGKST 42 (638)
T PRK10636 30 VGLVGKNGCGKST 42 (638)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999984
No 351
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=28.32 E-value=49 Score=31.44 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=33.0
Q ss_pred CceEeecCCCccccCCCCCcceEEEEeeeCCCCeEEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCccee
Q psy17338 42 PHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAHNN 121 (130)
Q Consensus 42 P~~lCs~LP~HWRsNKtLP~~FkVvaLg~V~DGT~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKsFt 121 (130)
.+.+|..-..||. ...+ .++- +++.+.+.|+.+.+--=.-.-.-.+.-|. ..-.+|.||.||||.
T Consensus 390 ~~a~~~f~~~~~~-~~~~-~p~G-i~l~dr~sG~p~~fd~h~~~~~~g~~~n~------------N~~I~G~sGsGKS~l 454 (829)
T TIGR03783 390 EQALCLFTEETNY-RSSL-SPFG-IKMADRLTGKPLHLDISDLPMKRGIITNR------------NKFILGPSGSGKSFF 454 (829)
T ss_pred HHHhhhccccccC-CCCC-CCCc-eeecccCCCCeEEEeccccccccCccccC------------ceEEECCCCCCHHHH
Confidence 5667776544444 1111 2233 33467777877776321000000111111 234689999999987
Q ss_pred e
Q psy17338 122 K 122 (130)
Q Consensus 122 l 122 (130)
+
T Consensus 455 ~ 455 (829)
T TIGR03783 455 T 455 (829)
T ss_pred H
Confidence 5
No 352
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=28.25 E-value=24 Score=26.12 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 38 ~~l~G~nGsGKSt 50 (194)
T cd03213 38 TAIMGPSGAGKST 50 (194)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 353
>KOG0057|consensus
Probab=28.20 E-value=24 Score=33.31 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=19.5
Q ss_pred CCCCeEEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCcc
Q psy17338 71 VMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 71 V~DGT~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKs 119 (130)
|-+|-.-+|.||- -+-+||+||+|||
T Consensus 367 iL~gvsf~I~kGe-----------------------kVaIvG~nGsGKS 392 (591)
T KOG0057|consen 367 VLKGVSFTIPKGE-----------------------KVAIVGSNGSGKS 392 (591)
T ss_pred eecceeEEecCCC-----------------------EEEEECCCCCCHH
Confidence 5567777777773 2347999999998
No 354
>PRK06526 transposase; Provisional
Probab=27.92 E-value=25 Score=28.28 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=15.1
Q ss_pred ecceeeeeccCCCcceeeC
Q psy17338 105 FNDLRFVGRSGREAHNNKA 123 (130)
Q Consensus 105 FNDLRFVGRSGRGKsFtls 123 (130)
-..|=|+|.+|.||++-..
T Consensus 98 ~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred CceEEEEeCCCCchHHHHH
Confidence 3468899999999997543
No 355
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=27.91 E-value=24 Score=30.29 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=10.0
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 41 ~liG~NGsGKST 52 (510)
T PRK15439 41 ALLGGNGAGKST 52 (510)
T ss_pred EEECCCCCCHHH
Confidence 368999999984
No 356
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=27.87 E-value=23 Score=25.95 Aligned_cols=34 Identities=21% Similarity=0.114 Sum_probs=21.9
Q ss_pred CCccccccccceeeeccceeeecceeeeeccCCCcceee
Q psy17338 84 DENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAHNNK 122 (130)
Q Consensus 84 DEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKsFtl 122 (130)
++....+|++... ...-.-+=+.|-+|.||++-.
T Consensus 22 ~~~~~~~l~~~~~-----~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 22 NAELLAALRQLAA-----GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred cHHHHHHHHHHHh-----cCCCCeEEEECCCCCCHHHHH
Confidence 3445566666532 123345779999999998654
No 357
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.78 E-value=9.3 Score=30.15 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=13.8
Q ss_pred eeeeccCCCcceeeCCCC
Q psy17338 109 RFVGRSGREAHNNKAPDS 126 (130)
Q Consensus 109 RFVGRSGRGKsFtls~~~ 126 (130)
=|+|.+|.|||--|.++.
T Consensus 25 ~i~G~nGsGKS~il~ai~ 42 (276)
T cd03241 25 VLTGETGAGKSILLDALS 42 (276)
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 589999999996655443
No 358
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.75 E-value=57 Score=26.59 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=19.2
Q ss_pred CCcceEEEEeeeCCCCeEEEEeecC
Q psy17338 59 LPVAFKVVALGDVMDGTIVTIRAGN 83 (130)
Q Consensus 59 LP~~FkVvaLg~V~DGT~Vtv~AGN 83 (130)
|-..=++.|+-++|||+ ++|++|+
T Consensus 104 m~~g~~~~A~i~~~~~v-~~V~vG~ 127 (170)
T COG3168 104 LKSGQGVSALIEAPGGV-YRVRVGQ 127 (170)
T ss_pred ecCCCceEEEEEcCCce-EEEeecc
Confidence 33444677888999999 9999996
No 359
>KOG0964|consensus
Probab=27.65 E-value=19 Score=36.30 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=14.8
Q ss_pred eeeccCCCcceeeCCCCcc
Q psy17338 110 FVGRSGREAHNNKAPDSYD 128 (130)
Q Consensus 110 FVGRSGRGKsFtls~~~~~ 128 (130)
.|||.|+|||--.+++-|=
T Consensus 30 IVGrNGSGKSNFF~AIrFV 48 (1200)
T KOG0964|consen 30 IVGRNGSGKSNFFHAIRFV 48 (1200)
T ss_pred EecCCCCCchhhHHHhhhh
Confidence 5999999999666666553
No 360
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=27.45 E-value=14 Score=32.77 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.8
Q ss_pred cCCCccccCCCCCcce---EEEEeeeC
Q psy17338 48 VLPTHWRSNKTLPVAF---KVVALGDV 71 (130)
Q Consensus 48 ~LP~HWRsNKtLP~~F---kVvaLg~V 71 (130)
..|+||||.++|..-+ +|.++-.|
T Consensus 139 ~~~s~~~~~~sL~~~L~~~~ipgI~gi 165 (415)
T PLN02771 139 ISTSNWRCTKTLGDYLAERNIMGIYDV 165 (415)
T ss_pred CCCCcccccCCHHHHHHHcCCcceecC
Confidence 4699999999999765 78888765
No 361
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=27.29 E-value=29 Score=25.58 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=10.1
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-.+|.||.|||=
T Consensus 37 ~~i~G~nGsGKST 49 (207)
T cd03369 37 IGIVGRTGAGKST 49 (207)
T ss_pred EEEECCCCCCHHH
Confidence 3456999999983
No 362
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=27.27 E-value=25 Score=29.95 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.4
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
-.+|.||.|||=-
T Consensus 34 ~l~G~NGsGKSTL 46 (501)
T PRK10762 34 ALVGENGAGKSTM 46 (501)
T ss_pred EEECCCCCCHHHH
Confidence 4689999999843
No 363
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=27.03 E-value=24 Score=30.23 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=10.7
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|.||.|||=
T Consensus 53 ~~I~G~nGsGKST 65 (382)
T TIGR03415 53 CVLMGLSGSGKSS 65 (382)
T ss_pred EEEECCCCCcHHH
Confidence 4568999999984
No 364
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=26.79 E-value=1.4e+02 Score=19.95 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=15.1
Q ss_pred eEEEEeeeCCCCeEEEEeec
Q psy17338 63 FKVVALGDVMDGTIVTIRAG 82 (130)
Q Consensus 63 FkVvaLg~V~DGT~Vtv~AG 82 (130)
.-.+.+-++++||.|++..-
T Consensus 92 ~~~~~~~~~~~gT~vt~~~~ 111 (145)
T cd08898 92 LVEFTLEPIAGGTLLTVTES 111 (145)
T ss_pred EEEEEEEecCCcEEEEEEEc
Confidence 34556678899999999753
No 365
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.66 E-value=26 Score=25.25 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.9
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+-.+|.+|.|||
T Consensus 31 ~~l~G~nGsGKs 42 (171)
T cd03228 31 VAIVGPSGSGKS 42 (171)
T ss_pred EEEECCCCCCHH
Confidence 356899999997
No 366
>PHA00520 packaging NTPase P4
Probab=26.41 E-value=27 Score=30.88 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=37.9
Q ss_pred cCCCccccccccceeeecc--ceeeecceeeeeccCCC--cceeeCCCCccC
Q psy17338 82 GNDENYCGELRNCTAVMKN--QVAKFNDLRFVGRSGRE--AHNNKAPDSYDL 129 (130)
Q Consensus 82 GNDEn~~aELRN~~avmkn--qvA~FNDLRFVGRSGRG--KsFtls~~~~~~ 129 (130)
.+||+..+-.|+..+--.. -+|+=|--|-.+|+|-| |.|+.-.-+|+-
T Consensus 238 S~DeKIe~v~~evskS~s~s~~va~d~~~~~l~RtgeGliR~f~~~~ts~~~ 289 (330)
T PHA00520 238 SDDEKIEAVVREVSKSNSGSMVVARDNVWRTLFRTGEGLIRIFAVLATSFTD 289 (330)
T ss_pred CccHhHHHHHHHHHhhccceEEEecCceeeeeeccCCceeEEeecccCCCCC
Confidence 6788888888776543333 56777778999999999 999999988874
No 367
>PRK06696 uridine kinase; Validated
Probab=26.39 E-value=24 Score=26.85 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=8.2
Q ss_pred eeeccCCCcc
Q psy17338 110 FVGRSGREAH 119 (130)
Q Consensus 110 FVGRSGRGKs 119 (130)
.-|.||.|||
T Consensus 27 I~G~sgsGKS 36 (223)
T PRK06696 27 IDGITASGKT 36 (223)
T ss_pred EECCCCCCHH
Confidence 4588999997
No 368
>PRK06921 hypothetical protein; Provisional
Probab=26.17 E-value=27 Score=28.11 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=15.9
Q ss_pred ecceeeeeccCCCcceeeCC
Q psy17338 105 FNDLRFVGRSGREAHNNKAP 124 (130)
Q Consensus 105 FNDLRFVGRSGRGKsFtls~ 124 (130)
++-|=|.|.+|.||++-+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 45588999999999986543
No 369
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=26.15 E-value=26 Score=32.22 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=11.1
Q ss_pred eeeccCCCcceeeC
Q psy17338 110 FVGRSGREAHNNKA 123 (130)
Q Consensus 110 FVGRSGRGKsFtls 123 (130)
.+|.||.|||=-|.
T Consensus 37 L~G~SGsGKSTLLr 50 (504)
T TIGR03238 37 LCGSSGDGKSEILA 50 (504)
T ss_pred EECCCCCCHHHHHh
Confidence 58999999985544
No 370
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=26.03 E-value=27 Score=29.01 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=11.0
Q ss_pred eeeeccCCCcceee
Q psy17338 109 RFVGRSGREAHNNK 122 (130)
Q Consensus 109 RFVGRSGRGKsFtl 122 (130)
=++|.+|.|||=.+
T Consensus 71 gLlGpNGaGKSTLl 84 (340)
T PRK13536 71 GLLGPNGAGKSTIA 84 (340)
T ss_pred EEECCCCCCHHHHH
Confidence 46899999998443
No 371
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.95 E-value=27 Score=28.07 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=9.6
Q ss_pred eeeeccCCCcc
Q psy17338 109 RFVGRSGREAH 119 (130)
Q Consensus 109 RFVGRSGRGKs 119 (130)
=++|.+|+|||
T Consensus 34 ~i~G~nGsGKS 44 (235)
T COG1122 34 LLIGPNGSGKS 44 (235)
T ss_pred EEECCCCCCHH
Confidence 46899999998
No 372
>PRK01889 GTPase RsgA; Reviewed
Probab=25.93 E-value=26 Score=29.34 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=12.7
Q ss_pred ceeeeeccCCCcceee
Q psy17338 107 DLRFVGRSGREAHNNK 122 (130)
Q Consensus 107 DLRFVGRSGRGKsFtl 122 (130)
-+-|+|.||.|||--+
T Consensus 197 ~~~lvG~sgvGKStLi 212 (356)
T PRK01889 197 TVALLGSSGVGKSTLV 212 (356)
T ss_pred EEEEECCCCccHHHHH
Confidence 3679999999998533
No 373
>TIGR00296 uncharacterized protein, PH0010 family. Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii.
Probab=25.70 E-value=24 Score=28.15 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=24.9
Q ss_pred CCCeEEEEeecCCCccccccccceee-----------eccce-eeecceeee
Q psy17338 72 MDGTIVTIRAGNDENYCGELRNCTAV-----------MKNQV-AKFNDLRFV 111 (130)
Q Consensus 72 ~DGT~Vtv~AGNDEn~~aELRN~~av-----------mknqv-A~FNDLRFV 111 (130)
+-|+-||+...++ .+||.|.-. .+|-+ |=|+|=||-
T Consensus 43 ~~g~FVTl~~~~~----~~LRGCIGs~~p~~pL~~~v~~~A~~AA~~DpRF~ 90 (200)
T TIGR00296 43 KRGVFITLKKKGN----KHLRGCIGTPEPVMPLIEAIEEAAISAATEDPRFP 90 (200)
T ss_pred cccEEEEEEECCC----cCCCcccccCCCcccHHHHHHHHHHHHHcCCCCCC
Confidence 6789999976433 369998543 33433 779999983
No 374
>PRK08181 transposase; Validated
Probab=25.45 E-value=28 Score=28.44 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.6
Q ss_pred ecceeeeeccCCCcceee
Q psy17338 105 FNDLRFVGRSGREAHNNK 122 (130)
Q Consensus 105 FNDLRFVGRSGRGKsFtl 122 (130)
-..|=|+|.+|.||++-.
T Consensus 106 ~~nlll~Gp~GtGKTHLa 123 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLA 123 (269)
T ss_pred CceEEEEecCCCcHHHHH
Confidence 345899999999999743
No 375
>PRK13796 GTPase YqeH; Provisional
Probab=25.12 E-value=36 Score=28.56 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=23.7
Q ss_pred EEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCcc
Q psy17338 76 IVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 76 ~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKs 119 (130)
.+.++|-+.++ ..||.+....... =.+.-|||.++.|||
T Consensus 136 v~~vSAk~g~g-I~eL~~~I~~~~~----~~~v~vvG~~NvGKS 174 (365)
T PRK13796 136 VVLISAQKGHG-IDELLEAIEKYRE----GRDVYVVGVTNVGKS 174 (365)
T ss_pred EEEEECCCCCC-HHHHHHHHHHhcC----CCeEEEEcCCCCcHH
Confidence 45677766655 3444443322211 137889999999998
No 376
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=25.04 E-value=33 Score=29.78 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=12.5
Q ss_pred eeeeeccCCCcceeeC
Q psy17338 108 LRFVGRSGREAHNNKA 123 (130)
Q Consensus 108 LRFVGRSGRGKsFtls 123 (130)
+-++|-||+||+=.|-
T Consensus 34 ~~lLGPSGcGKTTlLR 49 (352)
T COG3842 34 VTLLGPSGCGKTTLLR 49 (352)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4578999999986553
No 377
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=24.58 E-value=29 Score=29.42 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=11.5
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
+=.+|.||.|||=-|
T Consensus 43 ~~LlGpsGsGKSTLL 57 (375)
T PRK09452 43 LTLLGPSGCGKTTVL 57 (375)
T ss_pred EEEECCCCCcHHHHH
Confidence 346899999998544
No 378
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=24.57 E-value=32 Score=25.64 Aligned_cols=10 Identities=20% Similarity=0.415 Sum_probs=7.9
Q ss_pred eeeccCCCcc
Q psy17338 110 FVGRSGREAH 119 (130)
Q Consensus 110 FVGRSGRGKs 119 (130)
..|++|.||+
T Consensus 25 i~G~~G~GKT 34 (229)
T TIGR03881 25 VTGEPGTGKT 34 (229)
T ss_pred EECCCCCChH
Confidence 4678899996
No 379
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=24.25 E-value=30 Score=29.42 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=10.4
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+=.+|.||.|||=
T Consensus 33 ~~l~G~nGsGKST 45 (501)
T PRK11288 33 HALMGENGAGKST 45 (501)
T ss_pred EEEECCCCCCHHH
Confidence 3468999999983
No 380
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=24.17 E-value=28 Score=30.02 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=10.3
Q ss_pred eeeeccCCCccee
Q psy17338 109 RFVGRSGREAHNN 121 (130)
Q Consensus 109 RFVGRSGRGKsFt 121 (130)
=++|.||.|||=-
T Consensus 58 ~LvG~NGsGKSTL 70 (400)
T PRK10070 58 VIMGLSGSGKSTM 70 (400)
T ss_pred EEECCCCchHHHH
Confidence 3689999999843
No 381
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=23.95 E-value=1.7e+02 Score=23.98 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=51.7
Q ss_pred hHHHHHhhcCCCCccccCCCceEeecCCCccccCCCCCcceEEEE-eeeCCCCeEEEEeecCCCcccc-ccc--cc----
Q psy17338 23 RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVA-LGDVMDGTIVTIRAGNDENYCG-ELR--NC---- 94 (130)
Q Consensus 23 r~l~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVva-Lg~V~DGT~Vtv~AGNDEn~~a-ELR--N~---- 94 (130)
+.+...|+...|.-+...+|.+-+ .||. ...++-+ +.++.+|..++|+--....+.- +|. +.
T Consensus 51 ~~l~~~la~~~g~~~~~~~P~~~~-~lp~---------~g~R~~~~~~p~~~g~~i~IRk~~~~~~tl~~l~~~g~~~~~ 120 (299)
T TIGR02782 51 QRIIGLVADYLGTEVDRDKPIVEG-ELPL---------DGSRFEGLIPPVVAAPSFAIRKKAVAVFTLDDYVEAGIMTAA 120 (299)
T ss_pred HHHHHHHHHHhCCeecCCCCEEEE-EECC---------CCEEEEEEecCccCCcEEEEECcCCCCCCHHHHHhcCCCCHH
Confidence 345667888888877788896655 2342 2356643 4567778899998754433221 221 10
Q ss_pred -eeeeccce-eeecceeeeeccCCCcceee
Q psy17338 95 -TAVMKNQV-AKFNDLRFVGRSGREAHNNK 122 (130)
Q Consensus 95 -~avmknqv-A~FNDLRFVGRSGRGKsFtl 122 (130)
.+.++..+ ++-| +=+.|..|.||+=.+
T Consensus 121 ~~~~L~~~v~~~~~-ilI~G~tGSGKTTll 149 (299)
T TIGR02782 121 QRDVLREAVLARKN-ILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHHcCCe-EEEECCCCCCHHHHH
Confidence 01122222 2333 459999999998544
No 382
>PRK08939 primosomal protein DnaI; Reviewed
Probab=23.93 E-value=32 Score=28.44 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=14.8
Q ss_pred cceeeeeccCCCcceeeC
Q psy17338 106 NDLRFVGRSGREAHNNKA 123 (130)
Q Consensus 106 NDLRFVGRSGRGKsFtls 123 (130)
+-|=+.|.+|.|||+-+.
T Consensus 157 ~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458899999999998554
No 383
>PF13175 AAA_15: AAA ATPase domain
Probab=23.92 E-value=33 Score=26.99 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=14.9
Q ss_pred eeeec-ce-eeeeccCCCcceeeC
Q psy17338 102 VAKFN-DL-RFVGRSGREAHNNKA 123 (130)
Q Consensus 102 vA~FN-DL-RFVGRSGRGKsFtls 123 (130)
-=-|+ |+ =+||+.|.|||=-|.
T Consensus 17 ~i~~~~~itiiiG~N~sGKT~IL~ 40 (415)
T PF13175_consen 17 EINFDEDITIIIGENNSGKTNILE 40 (415)
T ss_pred eeecCCceEEEEccCCCCHHHHHH
Confidence 33444 44 489999999985443
No 384
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=23.90 E-value=33 Score=25.46 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=9.7
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
-++|.||.||+.
T Consensus 23 ~i~G~~GsGKT~ 34 (235)
T cd01123 23 EIFGEFGSGKTQ 34 (235)
T ss_pred EEECCCCCCHHH
Confidence 467889999985
No 385
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=23.44 E-value=34 Score=29.80 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=9.6
Q ss_pred eeeeccCCCcc
Q psy17338 109 RFVGRSGREAH 119 (130)
Q Consensus 109 RFVGRSGRGKs 119 (130)
=+.|.||.|||
T Consensus 149 LItG~SG~GKS 159 (308)
T COG1493 149 LITGPSGAGKS 159 (308)
T ss_pred EEECCCCCCHh
Confidence 36899999998
No 386
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.23 E-value=34 Score=26.92 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=11.8
Q ss_pred eeeccCCCcceeeCC
Q psy17338 110 FVGRSGREAHNNKAP 124 (130)
Q Consensus 110 FVGRSGRGKsFtls~ 124 (130)
++|.+|.|||--|..
T Consensus 26 i~G~NGsGKS~ll~A 40 (270)
T cd03242 26 LVGENAQGKTNLLEA 40 (270)
T ss_pred EECCCCCCHHHHHHH
Confidence 789999999865443
No 387
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=23.21 E-value=69 Score=26.95 Aligned_cols=87 Identities=23% Similarity=0.266 Sum_probs=48.0
Q ss_pred HHHHhhcCCCCccccCCCceEeecCCCccccCCCCCcceEEEEee-eC-CCCeEEEEeecCCCccc-ccccc---ce---
Q psy17338 25 LDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALG-DV-MDGTIVTIRAGNDENYC-GELRN---CT--- 95 (130)
Q Consensus 25 l~~~l~~~~gelv~T~sP~~lCs~LP~HWRsNKtLP~~FkVvaLg-~V-~DGT~Vtv~AGNDEn~~-aELRN---~~--- 95 (130)
+...|+...|.-+-..+|.+-+ .||. .++|-+.. ++ ++|+.++|+--....+. .+|.. ..
T Consensus 99 l~~~la~~~g~~l~~~~P~~d~-~l~~----------g~Rv~~~~~pvs~~g~~i~IR~~~~~~~tl~~l~~~g~~~~~~ 167 (340)
T TIGR03819 99 LAQRLAAAAGRRLDDAQPWVDG-RLPD----------GTRLHAVLPPVATDGTCLSLRVPRPRTFTLDELVASGTFPPGV 167 (340)
T ss_pred HHHHHHHHcCCcccCCCCeeEe-ECCC----------CEEEEEEecCccCCCcEEEEEeeCCccCCHHHHHHcCCCCHHH
Confidence 4455666777666778886443 3454 44554442 33 57899999876544432 22211 11
Q ss_pred -eeeccceeeecceeeeeccCCCcceee
Q psy17338 96 -AVMKNQVAKFNDLRFVGRSGREAHNNK 122 (130)
Q Consensus 96 -avmknqvA~FNDLRFVGRSGRGKsFtl 122 (130)
+.++.-+..=--+=++|.+|.||+=.+
T Consensus 168 ~~~L~~~v~~~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 168 ARLLRAIVAARLAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 122222221235679999999997433
No 388
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=23.02 E-value=40 Score=26.94 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=10.7
Q ss_pred eeeccCCCcceee
Q psy17338 110 FVGRSGREAHNNK 122 (130)
Q Consensus 110 FVGRSGRGKsFtl 122 (130)
.||+||.|||..+
T Consensus 44 ~va~sG~gKS~~~ 56 (378)
T PF13148_consen 44 IVAESGSGKSPVL 56 (378)
T ss_pred eecCCCCCCcHHH
Confidence 5899999998643
No 389
>PRK09183 transposase/IS protein; Provisional
Probab=22.93 E-value=37 Score=27.04 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=13.7
Q ss_pred cceeeeeccCCCcceee
Q psy17338 106 NDLRFVGRSGREAHNNK 122 (130)
Q Consensus 106 NDLRFVGRSGRGKsFtl 122 (130)
..+-++|-+|.|||.-.
T Consensus 103 ~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLA 119 (259)
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35779999999999644
No 390
>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis; PDB: 2PY7_X 2OLR_A 1AYL_A 1K3D_A 1OEN_A 1AQ2_A 1OS1_A 2OLQ_A 1K3C_A 2PXZ_X ....
Probab=22.92 E-value=25 Score=31.63 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=37.1
Q ss_pred CCceEeecCCCccccCCCCCcce-EEEEeeeCCCCeEEEEeecCCCccccccccceeeeccceeeecc------------
Q psy17338 41 CPHVVCTVLPTHWRSNKTLPVAF-KVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFND------------ 107 (130)
Q Consensus 41 sP~~lCs~LP~HWRsNKtLP~~F-kVvaLg~V~DGT~Vtv~AGNDEn~~aELRN~~avmknqvA~FND------------ 107 (130)
.|.+.--..|. |.++....... ....+-+...+. +|-.|- .|.+|++..+-.|.|-.+.-++
T Consensus 134 ~pd~tI~~~p~-f~~~p~~~g~~s~~~i~~d~~~~~--~vI~Gt--~Y~GEiKK~ift~~n~ll~~~g~l~mH~san~~~ 208 (466)
T PF01293_consen 134 EPDFTIINAPD-FKADPEIDGTNSDTFIIFDFERNV--AVILGT--RYAGEIKKGIFTVMNYLLPRNGVLPMHCSANVGK 208 (466)
T ss_dssp S-SEEEEEETT-S--TTCHCT-SSS-EEEEETTTTE--EEEES-----THHHHHHHHHHHHHHHHHTT-EEEEEEEEEET
T ss_pred CCCEEEEeCCc-cccCCCcCCCCCCcEEEEccccCe--EEEECC--cccccchHHHHHHHHHhhHhcCeEEEEeeeeeCC
Confidence 45555555555 55444222111 122223344443 344453 6888888765444332221111
Q ss_pred ----eeeeeccCCCcceeeCCC
Q psy17338 108 ----LRFVGRSGREAHNNKAPD 125 (130)
Q Consensus 108 ----LRFVGRSGRGKsFtls~~ 125 (130)
.=|-|=||.||+ |||.|
T Consensus 209 ~gd~alfFGLSGTGKT-TLs~d 229 (466)
T PF01293_consen 209 DGDTALFFGLSGTGKT-TLSAD 229 (466)
T ss_dssp TSSEEEEEESTTSSHH-HHHSB
T ss_pred CCCeEEEEecCCCCcc-ccccC
Confidence 347899999999 67753
No 391
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=22.91 E-value=28 Score=31.25 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=17.9
Q ss_pred hhhhHHHHHhh-cCCCCccccCCCceEeecCCCcc
Q psy17338 20 LAERTLDSLLA-EHPGELTRTGCPHVVCTVLPTHW 53 (130)
Q Consensus 20 ~~er~l~~~l~-~~~gelv~T~sP~~lCs~LP~HW 53 (130)
+.|.++...|+ .+...++-|-.-.++.++=|-.|
T Consensus 10 l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~ 44 (689)
T PF00063_consen 10 LNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKP 44 (689)
T ss_dssp -SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS-
T ss_pred CCHHHHHHHHHHHHccCCccccCCCeEEEECCchh
Confidence 34555544443 45567888877778888888543
No 392
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=22.84 E-value=12 Score=28.98 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=21.0
Q ss_pred ccccceeeeccceeeecceeeeeccCCCccee
Q psy17338 90 ELRNCTAVMKNQVAKFNDLRFVGRSGREAHNN 121 (130)
Q Consensus 90 ELRN~~avmknqvA~FNDLRFVGRSGRGKsFt 121 (130)
+|+......++.-.+.+-+=|.|-+|.||+--
T Consensus 15 ~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 15 QLQLFIEAAKMRQEALDHLLLYGPPGLGKTTL 46 (305)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHH
Confidence 45554444444444566688999999999853
No 393
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=22.68 E-value=39 Score=31.61 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=14.8
Q ss_pred eeeecceeeeeccCCCccee
Q psy17338 102 VAKFNDLRFVGRSGREAHNN 121 (130)
Q Consensus 102 vA~FNDLRFVGRSGRGKsFt 121 (130)
+++=.-|-.||-||+|||-|
T Consensus 33 i~~GEtlAlVGESGSGKSvT 52 (534)
T COG4172 33 IEAGETLALVGESGSGKSVT 52 (534)
T ss_pred ecCCCEEEEEecCCCCccHH
Confidence 33334566899999999976
No 394
>KOG0054|consensus
Probab=22.19 E-value=33 Score=34.99 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=33.2
Q ss_pred eEeecCCCccccCCCCCcceEEEEeeeCCCCeEEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCcc
Q psy17338 44 VVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAH 119 (130)
Q Consensus 44 ~lCs~LP~HWRsNKtLP~~FkVvaLg~V~DGT~Vtv~AGNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKs 119 (130)
.-++..|++|-+.-. +.|+=+.+.--|+ --.-|+|-+..++-+- -.=.|||.|.|||
T Consensus 1124 ~~~~~pp~~WP~~G~--I~f~~~~~RYrp~-------------lp~VLk~is~~I~p~e----KVGIVGRTGaGKS 1180 (1381)
T KOG0054|consen 1124 IEESRPPPSWPSKGE--IEFEDLSLRYRPN-------------LPLVLKGISFTIKPGE----KVGIVGRTGAGKS 1180 (1381)
T ss_pred CcCCCCCCCCCCCCe--EEEEEeEEEeCCC-------------CcchhcCceEEEcCCc----eEEEeCCCCCCHH
Confidence 335558888976654 3444443332222 2233555555555442 3567999999998
No 395
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=22.14 E-value=26 Score=31.39 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=13.2
Q ss_pred eeeeccCCCcceeeCCC
Q psy17338 109 RFVGRSGREAHNNKAPD 125 (130)
Q Consensus 109 RFVGRSGRGKsFtls~~ 125 (130)
=+||.+|.|||=-|..+
T Consensus 27 ~i~G~NGsGKS~ll~ai 43 (1179)
T TIGR02168 27 GIVGPNGCGKSNIVDAI 43 (1179)
T ss_pred EEECCCCCChhHHHHHH
Confidence 57999999999666443
No 396
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=22.11 E-value=28 Score=28.64 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=13.8
Q ss_pred cceee--eeccCCCcceeeC
Q psy17338 106 NDLRF--VGRSGREAHNNKA 123 (130)
Q Consensus 106 NDLRF--VGRSGRGKsFtls 123 (130)
.+.|+ .|..|.|||.+|.
T Consensus 22 ~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 22 KNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34554 5999999999874
No 397
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=21.89 E-value=41 Score=24.77 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=9.1
Q ss_pred eeeccCCCcce
Q psy17338 110 FVGRSGREAHN 120 (130)
Q Consensus 110 FVGRSGRGKsF 120 (130)
+.|.||.||+.
T Consensus 24 I~G~~GsGKT~ 34 (226)
T cd01393 24 IFGEFGSGKTQ 34 (226)
T ss_pred EeCCCCCChhH
Confidence 57889999985
No 398
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=21.68 E-value=36 Score=28.81 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=11.7
Q ss_pred eeeeccCCCcceeeC
Q psy17338 109 RFVGRSGREAHNNKA 123 (130)
Q Consensus 109 RFVGRSGRGKsFtls 123 (130)
-.+|.||.|||=.|.
T Consensus 49 ~llGpsGsGKSTLLr 63 (377)
T PRK11607 49 ALLGASGCGKSTLLR 63 (377)
T ss_pred EEECCCCCcHHHHHH
Confidence 468999999985543
No 399
>cd03580 NTR_Sfrp1_like NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse functions and are thought to work in Wnt signaling indirectly, as modulators or antagonists by binding Wnt ligands, and directly, via the Wnt receptor, Frizzled. They participate in regulating the patterning along the anteroposterior axis in vertebrates. Human Sfrp1 has been found frequently to be downregulated in breast cancer and is associated with disease progression and poor prognosis.
Probab=21.66 E-value=1.3e+02 Score=21.95 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=29.1
Q ss_pred CCccccCCCceEeecCCCccccCCCCCc--ceEEEEeeeCCCCeEEE
Q psy17338 34 GELTRTGCPHVVCTVLPTHWRSNKTLPV--AFKVVALGDVMDGTIVT 78 (130)
Q Consensus 34 gelv~T~sP~~lCs~LP~HWRsNKtLP~--~FkVvaLg~V~DGT~Vt 78 (130)
|.|-..+.+. +=..|+..|.|...... .-..+.+|.+.||-.|.
T Consensus 56 g~l~~~~~~~-~~l~l~~~~~C~C~~l~~~~~~YLImG~~~~g~~~v 101 (126)
T cd03580 56 GPLKKKDLKK-LVLWLKNGANCPCPQLDNLNGVYLVMGRKVDGKLLL 101 (126)
T ss_pred CCccccCcce-EEEEecCCCCCCCccccCCCceEEEEEEEeCCEEEE
Confidence 4555555554 33556778888766543 44667779999998876
No 400
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=21.62 E-value=29 Score=27.97 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=13.6
Q ss_pred ceeeeeccCCCcceeeC
Q psy17338 107 DLRFVGRSGREAHNNKA 123 (130)
Q Consensus 107 DLRFVGRSGRGKsFtls 123 (130)
-+=|+|-+|.||+-++.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35599999999997653
No 401
>PHA03260 Capsid triplex subunit 2; Provisional
Probab=21.54 E-value=49 Score=29.38 Aligned_cols=47 Identities=36% Similarity=0.610 Sum_probs=37.5
Q ss_pred CCCccccCCCC-CcceEEEEee-----eCC------CCeEEEEeecCCCc-------cccccccce
Q psy17338 49 LPTHWRSNKTL-PVAFKVVALG-----DVM------DGTIVTIRAGNDEN-------YCGELRNCT 95 (130)
Q Consensus 49 LP~HWRsNKtL-P~~FkVvaLg-----~V~------DGT~Vtv~AGNDEn-------~~aELRN~~ 95 (130)
.-..|+.-.|| |.+||-=-|| ++| -|+-|.++|-|||. +-.|-||-.
T Consensus 7 ~~~~w~~~q~~~~~~~~appl~~~~~e~~pprivas~g~fvr~~~~~~e~~~~~~p~~hge~~~~~ 72 (339)
T PHA03260 7 MSDGWIAAQSLHGAEFKAPPLGEKMIEDLPPRIVASMGIFVRLMARNDEGAKLFHPSFHGEKRNVV 72 (339)
T ss_pred cccchhhhhhccCCCCcCCCcchhhhhhCCchhhhccceEEEEEeecCCCCccccccccccccccc
Confidence 44678888777 5788888885 788 89999999999996 457888754
No 402
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.53 E-value=37 Score=26.42 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=11.4
Q ss_pred eeeeeccCCCcceee
Q psy17338 108 LRFVGRSGREAHNNK 122 (130)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (130)
+-.+|.+|.|||=-+
T Consensus 39 ~~i~G~nGsGKSTLl 53 (257)
T PRK14246 39 FGIMGPSGSGKSTLL 53 (257)
T ss_pred EEEECCCCCCHHHHH
Confidence 446899999998543
No 403
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=21.37 E-value=22 Score=26.58 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=22.3
Q ss_pred cCCCccccccccceeeeccceeeecceeeeeccCCCcceee
Q psy17338 82 GNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAHNNK 122 (130)
Q Consensus 82 GNDEn~~aELRN~~avmknqvA~FNDLRFVGRSGRGKsFtl 122 (130)
|.++...+.+|+... +....+=+-+.|-+|.||+.-+
T Consensus 23 ~~~~~~~~~l~~~~~----~~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 23 GENAELVARLRELAA----GPVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCcHHHHHHHHHHHh----ccCCCCeEEEECCCCCCHHHHH
Confidence 333334455555433 2333455789999999998543
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=21.31 E-value=41 Score=25.63 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=9.9
Q ss_pred eeeeccCCCcce
Q psy17338 109 RFVGRSGREAHN 120 (130)
Q Consensus 109 RFVGRSGRGKsF 120 (130)
=.+|.||.|||=
T Consensus 29 ~ltGpNg~GKST 40 (199)
T cd03283 29 LITGSNMSGKST 40 (199)
T ss_pred EEECCCCCChHH
Confidence 467999999983
No 405
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=21.14 E-value=43 Score=30.91 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=10.9
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
|=.||-||+|||=
T Consensus 320 lglVGeSGsGKST 332 (539)
T COG1123 320 LGLVGESGSGKST 332 (539)
T ss_pred EEEECCCCCCHHH
Confidence 4579999999983
No 406
>PRK08727 hypothetical protein; Validated
Probab=21.10 E-value=45 Score=25.80 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=15.4
Q ss_pred eecceeeeeccCCCcceee
Q psy17338 104 KFNDLRFVGRSGREAHNNK 122 (130)
Q Consensus 104 ~FNDLRFVGRSGRGKsFtl 122 (130)
.+|-+=+.|-||.||+.-+
T Consensus 40 ~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3577999999999998543
No 407
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.08 E-value=35 Score=28.72 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.7
Q ss_pred ecceeeeeccCCCcceeeC
Q psy17338 105 FNDLRFVGRSGREAHNNKA 123 (130)
Q Consensus 105 FNDLRFVGRSGRGKsFtls 123 (130)
.+-|=|.|-+|.||+|-+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred CCcEEEECCCCCcHHHHHH
Confidence 4678899999999998543
No 408
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=20.94 E-value=40 Score=28.86 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=10.0
Q ss_pred eeeeeccCCCcc
Q psy17338 108 LRFVGRSGREAH 119 (130)
Q Consensus 108 LRFVGRSGRGKs 119 (130)
+=+.|.||.|||
T Consensus 149 vLi~G~SG~GKS 160 (308)
T PRK05428 149 VLITGESGIGKS 160 (308)
T ss_pred EEEEcCCCCCHH
Confidence 347899999998
No 409
>PRK06893 DNA replication initiation factor; Validated
Probab=20.68 E-value=41 Score=25.87 Aligned_cols=19 Identities=5% Similarity=-0.094 Sum_probs=14.3
Q ss_pred eecc-eeeeeccCCCcceee
Q psy17338 104 KFND-LRFVGRSGREAHNNK 122 (130)
Q Consensus 104 ~FND-LRFVGRSGRGKsFtl 122 (130)
.+|. |=+.|-||.||+.-+
T Consensus 37 ~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred cCCCeEEEECCCCCCHHHHH
Confidence 4565 467899999998644
No 410
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=20.61 E-value=31 Score=29.28 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=18.3
Q ss_pred cceeeecceeeeeccCCCcceeeC
Q psy17338 100 NQVAKFNDLRFVGRSGREAHNNKA 123 (130)
Q Consensus 100 nqvA~FNDLRFVGRSGRGKsFtls 123 (130)
+.-..||-|=+.|.+|.||+.-+.
T Consensus 143 ~~~~~~~~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 143 NPGKAYNPLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CcCccCCeEEEECCCCCCHHHHHH
Confidence 333467889999999999996543
No 411
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=20.57 E-value=1e+02 Score=22.58 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=19.9
Q ss_pred CCCCCcceEEEEeeeCCCCeEEEEe
Q psy17338 56 NKTLPVAFKVVALGDVMDGTIVTIR 80 (130)
Q Consensus 56 NKtLP~~FkVvaLg~V~DGT~Vtv~ 80 (130)
||-=-..|||||...|+-++++|+.
T Consensus 57 nKLE~~G~kVvsmtgvgqt~vWtLH 81 (83)
T PF06399_consen 57 NKLEKMGYKVVSMTGVGQTLVWTLH 81 (83)
T ss_dssp HHHHHTTEEEEEEEEETTEEEEEEE
T ss_pred HHHHhcCeEEEEEeccCceEEEEEe
Confidence 5544578999999999998777765
No 412
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=20.55 E-value=63 Score=22.86 Aligned_cols=16 Identities=44% Similarity=0.875 Sum_probs=10.2
Q ss_pred ceeeecceee-eeccCC
Q psy17338 101 QVAKFNDLRF-VGRSGR 116 (130)
Q Consensus 101 qvA~FNDLRF-VGRSGR 116 (130)
|..+..|+.| |||+|+
T Consensus 1 ~~T~v~~I~~~vGRtG~ 17 (82)
T PF03120_consen 1 QETKVRDIEWQVGRTGK 17 (82)
T ss_dssp EEEEEEEEEEEE-TTSB
T ss_pred CeEEEEEEEEecCCCeE
Confidence 3456666666 789886
No 413
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=20.51 E-value=41 Score=25.91 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=10.8
Q ss_pred eeeeeccCCCcce
Q psy17338 108 LRFVGRSGREAHN 120 (130)
Q Consensus 108 LRFVGRSGRGKsF 120 (130)
+-++|+||.||+-
T Consensus 42 i~ivG~~~~GKst 54 (225)
T cd01882 42 VAVVGPPGVGKTT 54 (225)
T ss_pred EEEECCCCCCHHH
Confidence 4689999999974
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.36 E-value=41 Score=29.63 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=13.1
Q ss_pred eeeeeccCCCcceeeC
Q psy17338 108 LRFVGRSGREAHNNKA 123 (130)
Q Consensus 108 LRFVGRSGRGKsFtls 123 (130)
.=|||.+|.||+=++.
T Consensus 194 i~lvGpnG~GKTTtla 209 (420)
T PRK14721 194 YALIGPTGVGKTTTTA 209 (420)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4589999999986663
No 415
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=20.34 E-value=2e+02 Score=18.70 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=14.5
Q ss_pred EEEEeeeCCCCeEEEEeec
Q psy17338 64 KVVALGDVMDGTIVTIRAG 82 (130)
Q Consensus 64 kVvaLg~V~DGT~Vtv~AG 82 (130)
-.+.+-+.+|||.|++.--
T Consensus 89 ~~~~~~~~~~~T~v~~~~~ 107 (139)
T cd07814 89 VTVTLEETGGGTRLTLTHS 107 (139)
T ss_pred EEEEEEECCCCEEEEEEEE
Confidence 3455778889999999853
No 416
>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].
Probab=20.33 E-value=47 Score=28.87 Aligned_cols=17 Identities=47% Similarity=0.851 Sum_probs=13.9
Q ss_pred CCccccCCCCCcceEEEE
Q psy17338 50 PTHWRSNKTLPVAFKVVA 67 (130)
Q Consensus 50 P~HWRsNKtLP~~FkVva 67 (130)
=++|||.| ||.+|||+-
T Consensus 58 Ls~YrSGk-LPKafKiiP 74 (301)
T PF05291_consen 58 LSRYRSGK-LPKAFKIIP 74 (301)
T ss_pred HhhcCCCC-CCcCeeccc
Confidence 35899876 999999974
Done!