RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17338
(130 letters)
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute
myeloid leukemia, AML, RUNX1, RUNT domain, chloride
binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP:
b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A
1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Length = 140
Score = 159 bits (404), Expect = 6e-52
Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R++ +LA+HPGEL RT P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 62 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 97
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 30.2 bits (69), Expect = 0.14
Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 71 VMDG-------TIVTI-RAGNDENYCGELRNCTAVM---KNQVAKFNDLRFVGRSGREAH 119
VM+G +VTI A NYC N A+M F R G
Sbjct: 244 VMEGYNWCHDRNVVTIFSA---PNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 300
Query: 120 NNKAPD 125
+ PD
Sbjct: 301 TRRTPD 306
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
1aw5_A
Length = 342
Score = 29.5 bits (67), Expect = 0.29
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 65 VVALGDVMDGTIVTIRAGNDENYCGELRNCTAVM 98
VA D++DG I I+ G L + T V+
Sbjct: 175 CVAPSDMIDGRIRDIKRGLINA---NLAHKTFVL 205
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase,
tetrapyrrole biosynthesis, reactio intermediate, lyase;
HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB:
1e51_A* 2z0i_A 2z1b_A
Length = 330
Score = 28.7 bits (65), Expect = 0.47
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 65 VVALGDVMDGTIVTIRAGNDENYCGELRNCTAVM 98
VVA D+MDG + I+ + L N +VM
Sbjct: 164 VVAPSDMMDGRVEAIKEALMAH---GLGNRVSVM 194
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.50
Identities = 6/29 (20%), Positives = 8/29 (27%), Gaps = 12/29 (41%)
Query: 99 KNQVAKF-NDLRFVGRSGREAHNNKAPDS 126
K + K L+ A DS
Sbjct: 19 KQALKKLQASLKLY-----------ADDS 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.79
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 22/64 (34%)
Query: 3 LTTENMNDNENFISAEVLAERTLD------------SLLAE----HPGELTRTGCPHVVC 46
LTT +F+SA +LD SLL + P +L P V
Sbjct: 270 LTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----PREVL 323
Query: 47 TVLP 50
T P
Sbjct: 324 TTNP 327
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.96
Identities = 24/134 (17%), Positives = 41/134 (30%), Gaps = 47/134 (35%)
Query: 4 TTENMNDNE------------NFISAEVLAER--TLDSLLAEHPGELTRT---GCP-HVV 45
T D+E ++S+ V + D +L E G H +
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 46 CTVLPTHWRSNKTLPVAFKVV--------------------ALGD-VMDGTIVTIRA--- 81
L ++ TL +++ AL V +G + A
Sbjct: 105 AAKLLQE--NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN-AQLVAIFG 161
Query: 82 --GNDENYCGELRN 93
GN ++Y ELR+
Sbjct: 162 GQGNTDDYFEELRD 175
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A
{Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A*
1b4e_A
Length = 323
Score = 27.5 bits (62), Expect = 1.3
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 65 VVALGDVMDGTIVTIRAGNDEN 86
+A MDG + IR D
Sbjct: 160 FIAPSAAMDGQVQAIRQALDAA 181
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole
biosynthesis, ALAD, porphyrin biosynt heme biosynthesis,
lyase; 2.6A {Prosthecochloris vibrioformis} SCOP:
c.1.10.3 PDB: 2c1h_A*
Length = 328
Score = 26.7 bits (60), Expect = 2.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 65 VVALGDVMDGTIVTIRAGNDEN 86
V+ D+MDG I IR DE
Sbjct: 166 FVSPSDMMDGRIGAIREALDET 187
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution,
metalloenzyme, porphobilinogen synthase, protein
engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A*
1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A
2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Length = 337
Score = 26.7 bits (60), Expect = 2.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 65 VVALGDVMDGTIVTIRAGNDEN 86
VVA D+MDG I IR +
Sbjct: 171 VVAPSDMMDGRIGAIREALESA 192
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Length = 356
Score = 26.7 bits (60), Expect = 2.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 65 VVALGDVMDGTIVTIRAGNDEN 86
+V D+MDG + IR D
Sbjct: 179 MVCPSDMMDGRVSAIRESLDME 200
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing,
core snRNP domain, systemic lupus eryth SLE, RNA
binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP:
b.38.1.1
Length = 75
Score = 24.3 bits (53), Expect = 7.3
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 74 GTIVTIRAGNDENYCGELRNCTAVM 98
G IVT E Y G+L M
Sbjct: 15 GHIVTCETNTGEVYRGKLIEAEDNM 39
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 24.9 bits (55), Expect = 9.7
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 86 NYCGELRNCTAVMK 99
NY N AV+K
Sbjct: 297 NYLDVYNNKAAVLK 310
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.399
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,971,886
Number of extensions: 105839
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 19
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)