RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17338
         (130 letters)



>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 124

 Score =  181 bits (461), Expect = 3e-61
 Identities = 69/93 (74%), Positives = 80/93 (86%)

Query: 24  TLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGN 83
           ++  +LA+HPGEL RT  P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+ AGN
Sbjct: 1   SMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGN 60

Query: 84  DENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           DENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 61  DENYSAELRNATAAMKNQVARFNDLRFVGRSGR 93


>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
           subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 288

 Score = 25.0 bits (54), Expect = 3.1
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 4/28 (14%)

Query: 73  DGTIVTI-RAGNDENYCGELRNCTAVMK 99
           D  +VTI  A    NYC    N  A+M+
Sbjct: 248 DRNVVTIFSA---PNYCYRCGNQAAIME 272


>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central
           domain {Maize (Zea mays) [TaxId: 4577]}
          Length = 135

 Score = 24.6 bits (53), Expect = 3.2
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 40  GCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGEL 91
           G   V          + K + +   V+      +G  +++     E   G+ 
Sbjct: 85  GKCCVSGCSGIRVNDAEKLVTIGGHVLR-----EGEWLSLNGSTGEVILGKQ 131


>d1u1ia2 d.81.1.3 (A:228-332) Myo-inositol 1-phosphate synthase
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 105

 Score = 24.3 bits (53), Expect = 3.3
 Identities = 5/28 (17%), Positives = 14/28 (50%)

Query: 6  ENMNDNENFISAEVLAERTLDSLLAEHP 33
          + ++  +N  S  +  ++ L+ +L   P
Sbjct: 36 KVLSARDNKESKVLSKDKVLEKMLGYSP 63


>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
           sapiens), beta isoform [TaxId: 9606]}
          Length = 294

 Score = 25.0 bits (54), Expect = 3.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 86  NYCGELRNCTAVMK 99
           NYCGE  N  A+M 
Sbjct: 266 NYCGEFDNAGAMMS 279


>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 324

 Score = 24.9 bits (54), Expect = 3.7
 Identities = 4/14 (28%), Positives = 8/14 (57%)

Query: 86  NYCGELRNCTAVMK 99
           NYC ++ N  + + 
Sbjct: 275 NYCDQMGNKASYIH 288


>d1gr0a2 d.81.1.3 (A:201-311) Myo-inositol 1-phosphate synthase
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 111

 Score = 23.9 bits (52), Expect = 4.6
 Identities = 6/31 (19%), Positives = 11/31 (35%)

Query: 5  TENMNDNENFISAEVLAERTLDSLLAEHPGE 35
            NM + E   S ++   + + S L      
Sbjct: 36 FLNMLERERLESKKISKTQAVTSNLKREFKT 66


>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida
           albicans) [TaxId: 5476]}
          Length = 440

 Score = 24.4 bits (52), Expect = 5.5
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)

Query: 21  AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVA 67
             +TL  L+   P E               T + S+K LP  FKV++
Sbjct: 64  NNQTLRDLVTAKPQEYLGESI--------ITKFGSSKELPFLFKVLS 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,088
Number of extensions: 19642
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 11
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.7 bits)