BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17339
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 133/256 (51%), Gaps = 20/256 (7%)
Query: 130 KLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL-QGIS 188
+ RII G +L G + + G+ C G+++ +++AAHC
Sbjct: 33 RPRIIGGSSSLPGSHPWLAAIYI----------GDSFCAGSLVHTCWVVSAAHCFSHSPP 82
Query: 189 KSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEF----N 244
+ + +++G+H N +TF +EK + + + +D+ +++++ + +
Sbjct: 83 RDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRS 142
Query: 245 QYVQPICIPDRDNA-AASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVY 303
Q+VQPIC+P+ + A C + GWG + E++ S++LR A V ++ + C S VY
Sbjct: 143 QFVQPICLPEPGSTFPAGHKCQIAGWGHLD-ENVSGYSSSLREALVPLVADHKCSSPEVY 201
Query: 304 GNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGV 363
G +I +MLCAGY + PLAC+ G L G++SWGDGC + +KPGV
Sbjct: 202 G---ADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGV 258
Query: 364 YTRVSYYTKWINDRIQ 379
YTRV+ Y WINDRI+
Sbjct: 259 YTRVANYVDWINDRIR 274
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 58 TCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVIL 117
CG R H+ + +I+GG+S+ G++PW I + G+ C G+++ ++
Sbjct: 21 ACGRR---HKKRTFLRPRIIGGSSSLPGSHPWLAAIYI------GDSFCAGSLVHTCWVV 71
Query: 118 TAAHCL-QGISKSKLRIIVGKHNLNGVDKFEKTFKVE 153
+AAHC + + +++G+H N +TF +E
Sbjct: 72 SAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIE 108
>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|C Chain C, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 257
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 10/223 (4%)
Query: 163 GEHQCGGAIISDTVILTAAHCL-QGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G+ C G+++ +++AAHC + + +++G+H N +TF +EK + +
Sbjct: 21 GDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTL 80
Query: 222 FRKEGTHSNDIAVVKIRGNIEF----NQYVQPICIPDRDNA-AASDWCVVTGWGAQNAES 276
+ +D+ +++++ + +Q+VQPIC+P+ + A C + GWG + E+
Sbjct: 81 YSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLD-EN 139
Query: 277 IDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLA 336
+ S++LR A V ++ + C S VYG +I +MLCAGY + PLA
Sbjct: 140 VSGYSSSLREALVPLVADHKCSSPEVYG---ADISPNMLCAGYFDCKSDACQGDSGGPLA 196
Query: 337 CKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
C+ G L G++SWGDGC + +KPGVYTRV+ Y WINDRI+
Sbjct: 197 CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 239
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL-QGISKSKLRII 134
I+GG+S+ G++PW I + G+ C G+++ +++AAHC + + ++
Sbjct: 1 IIGGSSSLPGSHPWLAAIYI------GDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVV 54
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+H N +TF +E
Sbjct: 55 LGQHFFNRTTDVTQTFGIE 73
>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75
Length = 248
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 10/223 (4%)
Query: 163 GEHQCGGAIISDTVILTAAHCL-QGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G+ C G+++ +++AAHC + + +++G+H N +TF +EK + +
Sbjct: 21 GDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTL 80
Query: 222 FRKEGTHSNDIAVVKIRGNIEF----NQYVQPICIPDRDNA-AASDWCVVTGWGAQNAES 276
+ +D+ +++++ + +Q+VQPIC+P+ + A C + GWG + E+
Sbjct: 81 YSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLD-EN 139
Query: 277 IDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLA 336
+ S++LR A V ++ + C S VYG +I +MLCAGY + PLA
Sbjct: 140 VSGYSSSLREALVPLVADHKCSSPEVYG---ADISPNMLCAGYFDCKSDACQGDSGGPLA 196
Query: 337 CKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
C+ G L G++SWGDGC + +KPGVYTRV+ Y WINDRI+
Sbjct: 197 CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 239
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL-QGISKSKLRII 134
I+GG+S+ G++PW I + G+ C G+++ +++AAHC + + ++
Sbjct: 1 IIGGSSSLPGSHPWLAAIYI------GDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVV 54
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+H N +TF +E
Sbjct: 55 LGQHFFNRTTDVTQTFGIE 73
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 131/258 (50%), Gaps = 17/258 (6%)
Query: 127 SKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG 186
+K K RI+ G ++ G E ++V + S T + H CGG+II + ILTAAHC G
Sbjct: 382 TKIKPRIVGGTASVRG----EWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYG 435
Query: 187 ISKSK-LRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQ 245
+ K LR+ G N + + + F V++ ++H ++ K DIA++K+ + +
Sbjct: 436 VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYTD 494
Query: 246 YVQPICIPDR--DNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVY 303
+PIC+P + N +D C VTGWG + D I NTL+ A + ++ C+
Sbjct: 495 SQRPICLPSKGDRNVIYTD-CWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKRY-- 549
Query: 304 GNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGV 363
I M+CAGY PL+CK + L G+ SWG+GCA++ +PGV
Sbjct: 550 --RGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGV 607
Query: 364 YTRVSYYTKWINDRIQML 381
YT V Y WI ++ Q +
Sbjct: 608 YTNVVEYVDWILEKTQAV 625
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRI 133
+IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 387 RIVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRV 444
Query: 134 IVGKHNLNGVDKFEKTFKVE 153
G N + + + F V+
Sbjct: 445 YSGILNQSEIKEDTSFFGVQ 464
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 122/245 (49%), Gaps = 21/245 (8%)
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLR 193
IVG +N K +V Q + E CGG I+S+ ILTAAHCL + K+R
Sbjct: 1 IVGGYNC-------KDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVR 53
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP 253
VG N + E +VE + H+RF KE T+ DIAV++++ I F V P +P
Sbjct: 54 --VGDRNTEQEEGGEAVHEVEVVIKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPASLP 110
Query: 254 DRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDS 313
A + C+++GWG A S D + L+ V+ Q C +S I +
Sbjct: 111 TAPPATGTK-CLISGWG-NTASSGADYPDELQCLDAPVLSQAKCEAS-----YPGKITSN 163
Query: 314 MLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKW 373
M C G+L P+ C G+ L GVVSWGDGCA+KNKPGVYT+V Y KW
Sbjct: 164 MFCVGFLEGGKDSCQGDSGGPVVCN--GQ--LQGVVSWGDGCAQKNKPGVYTKVYNYVKW 219
Query: 374 INDRI 378
I + I
Sbjct: 220 IKNTI 224
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 12/233 (5%)
Query: 158 SSTGQGEHQCGGAIISDTVILTAAHCLQGIS-KSKLRIIVGKHNLNGVDKFEKTFKVEKA 216
S T +G H CGG+++S+ +L+AAHC K + +G H L+ + K ++
Sbjct: 17 SITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDI 76
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAE 275
+ H + +EG+ DIA++++ I F++Y++PI +P + + + C VTGWG A
Sbjct: 77 IPHPSYLQEGSQ-GDIALLQLSRPITFSRYIRPISLPAANASFPNGLHCTVTGWG-HVAP 134
Query: 276 SIDDIS-NTLRAATVKVIDQNTCRSSAVYG-----NSNQNILDSMLCAGYLNXXXXXXXX 329
S+ ++ L+ V +I + TC +A+Y + + M+CAGY+
Sbjct: 135 SVSLLTPKPLQQLEVPLISRETC--NALYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQG 192
Query: 330 XXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQ 382
PL+C + G + L+G+VSWGD C +N+PGVYT S Y WI ++ LQ
Sbjct: 193 DSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTELQ 245
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGI-SKSKLRII 134
I GG+S G +PWQV I T +G H CGG+++S+ +L+AAHC K +
Sbjct: 1 ITGGSSAVAGQWPWQVSI-----TYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVK 55
Query: 135 VGKHNLNGVDKFEKTFKV 152
+G H L D + + KV
Sbjct: 56 LGAHQL---DSYSEDAKV 70
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 13/236 (5%)
Query: 147 EKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGIS-KSKLRIIVGKHNLNGVD 205
E ++V +QV+ + + H CGG++I +LTAAHC G+ + RI G L+ +
Sbjct: 11 EWPWQVSLQVKLTAQR--HLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILELSDIT 68
Query: 206 KFEKTFKVEKAVLHHRFR-KEGTHSNDIAVVKIRGNIEFNQYVQPICIPDR-DNAAASDW 263
K ++++ ++H ++ EG H DIA++K++ +E+ ++ +PI +P + D +
Sbjct: 69 KDTPFSQIKEIIIHQNYKVSEGNH--DIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTN 126
Query: 264 CVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXX 323
C VTGWG + +I N L+ + ++ C+ + I M+CAGY
Sbjct: 127 CWVTGWGFSKEKG--EIQNILQKVNIPLVTNEECQKRY----QDYKITQRMVCAGYKEGG 180
Query: 324 XXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL CK G + L G+ SWG+GCA++ +PGVYT+V+ Y WI ++ Q
Sbjct: 181 KDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQ 236
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGIS-KSKLRII 134
IVGGT + +G +PWQV +QV+ + + H CGG++I +LTAAHC G+ + RI
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQR--HLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIY 58
Query: 135 VGKHNLNGVDK---FEKTFKVEIQVRSSTGQGEH 165
G L+ + K F + ++ I +G H
Sbjct: 59 SGILELSDITKDTPFSQIKEIIIHQNYKVSEGNH 92
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 12/233 (5%)
Query: 158 SSTGQGEHQCGGAIISDTVILTAAHCLQGIS-KSKLRIIVGKHNLNGVDKFEKTFKVEKA 216
S T +G H CGG+++S+ +L+AAHC K + +G H L+ + K ++
Sbjct: 17 SITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDI 76
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAE 275
+ H + +EG+ DIA++++ I F++Y++PI +P + + C VTGWG A
Sbjct: 77 IPHPSYLQEGSQ-GDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWG-HVAP 134
Query: 276 SIDDIS-NTLRAATVKVIDQNTCRSSAVYG-----NSNQNILDSMLCAGYLNXXXXXXXX 329
S+ ++ L+ V +I + TC S +Y + + M+CAGY+
Sbjct: 135 SVSLLTPKPLQQLEVPLISRETCNS--LYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQG 192
Query: 330 XXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQ 382
PL+C + G + L+G+VSWGD C +N+PGVYT S Y WI ++ LQ
Sbjct: 193 DSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTELQ 245
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGI-SKSKLRII 134
I GG+S G +PWQV I T +G H CGG+++S+ +L+AAHC K +
Sbjct: 1 ITGGSSAVAGQWPWQVSI-----TYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVK 55
Query: 135 VGKHNLNGVDKFEKTFKV 152
+G H L D + + KV
Sbjct: 56 LGAHQL---DSYSEDAKV 70
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 12/233 (5%)
Query: 158 SSTGQGEHQCGGAIISDTVILTAAHCLQGIS-KSKLRIIVGKHNLNGVDKFEKTFKVEKA 216
S T +G H CGG+++S+ +L+AAHC K + +G H L+ + K ++
Sbjct: 17 SITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDI 76
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAE 275
+ H + +EG+ DIA++++ I F++Y++PI +P + + C VTGWG A
Sbjct: 77 IPHPSYLQEGSQ-GDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWG-HVAP 134
Query: 276 SIDDIS-NTLRAATVKVIDQNTCRSSAVYG-----NSNQNILDSMLCAGYLNXXXXXXXX 329
S+ ++ L+ V +I + TC S +Y + + M+CAGY+
Sbjct: 135 SVSLLTPKPLQQLEVPLISRETCNS--LYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQG 192
Query: 330 XXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQ 382
PL+C + G + L+G+VSWGD C +N+PGVYT S Y WI ++ LQ
Sbjct: 193 DSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTELQ 245
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGI-SKSKLRII 134
I GG+S G +PWQV I T +G H CGG+++S+ +L+AAHC K +
Sbjct: 1 ITGGSSAVAGQWPWQVSI-----TYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVK 55
Query: 135 VGKHNLNGVDKFEKTFKV 152
+G H L D + + KV
Sbjct: 56 LGAHQL---DSYSEDAKV 70
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 13/236 (5%)
Query: 147 EKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGIS-KSKLRIIVGKHNLNGVD 205
E ++V +QV+ + + H CGG++I +LTAAHC G+ + RI G NL+ +
Sbjct: 11 EWPWQVSLQVKLTAQR--HLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILNLSDIT 68
Query: 206 KFEKTFKVEKAVLHHRFR-KEGTHSNDIAVVKIRGNIEFNQYVQPICIPDR-DNAAASDW 263
K ++++ ++H ++ EG H DIA++K++ + + ++ +PI +P + D +
Sbjct: 69 KDTPFSQIKEIIIHQNYKVSEGNH--DIALIKLQAPLNYTEFQKPISLPSKGDTSTIYTN 126
Query: 264 CVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXX 323
C VTGWG + +I N L+ + ++ C+ + I M+CAGY
Sbjct: 127 CWVTGWGFSKEKG--EIQNILQKVNIPLVTNEECQKRY----QDYKITQRMVCAGYKEGG 180
Query: 324 XXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL CK G + L G+ SWG+GCA++ +PGVYT+V+ Y WI ++ Q
Sbjct: 181 KDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQ 236
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGIS-KSKLRII 134
IVGGT++ +G +PWQV +QV+ + + H CGG++I +LTAAHC G+ + RI
Sbjct: 1 IVGGTNSSWGEWPWQVSLQVKLTAQR--HLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIY 58
Query: 135 VGKHNLNGVDK---FEKTFKVEIQVRSSTGQGEH 165
G NL+ + K F + ++ I +G H
Sbjct: 59 SGILNLSDITKDTPFSQIKEIIIHQNYKVSEGNH 92
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 11/245 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGK 198
+ G + ++ + +++ H CGG+II + ILTAAHC G+ K LR+ G
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGI 61
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-- 256
N + + + F V++ ++H ++ K DIA++K+ + + +PIC+P +
Sbjct: 62 LNQSEIKEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYTDSQRPICLPSKGDR 120
Query: 257 NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC 316
N +D C VTGWG + D I NTL+ A + ++ C+ I M+C
Sbjct: 121 NVIYTD-CWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMIC 173
Query: 317 AGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AGY PL+CK + L G+ SWG+GCA++ +PGVYT V Y WI +
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 377 RIQML 381
+ Q +
Sbjct: 234 KTQAV 238
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVE 153
G N + + + F V+
Sbjct: 59 SGILNQSEIKEDTSFFGVQ 77
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 122/239 (51%), Gaps = 12/239 (5%)
Query: 140 LNGVDKFEKTFKVEIQVRSS-TGQGEHQCGGAIISDTVILTAAHCLQGI---SKSKLRII 195
+ G D F ++ + + G H CG +I ++ +TA HC+ G + S L+I+
Sbjct: 2 VGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIV 61
Query: 196 VGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDR 255
G+ +++ + E+ V K +LH F NDI+++K+ G++ FN V PI +P++
Sbjct: 62 AGELDMSVNEGSEQIITVSKIILHENFDYN-LLDNDISLLKLSGSLTFNDNVAPIALPEQ 120
Query: 256 DNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSML 315
+ A D +VTGWG + + + L+ TV ++ CR A YG ILDSM+
Sbjct: 121 GHTATGD-VIVTGWGTTSEGG--NTPDVLQKVTVPLVSDEDCR--ADYGA--DEILDSMI 173
Query: 316 CAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
CAG PLA G L+G+VSWG GCA+ PGVYT VSY+ WI
Sbjct: 174 CAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWI 232
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGI---SKSKLR 132
IVGGT G +P+Q+ Q + G H CG +I ++ +TA HC+ G + S L+
Sbjct: 1 IVGGTDATLGEFPYQLSFQ-ETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQ 59
Query: 133 IIVGKHNLN 141
I+ G+ +++
Sbjct: 60 IVAGELDMS 68
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 11/245 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGK 198
+ G + ++ + +++ H CGG+II + ILTAAHC G+ K LR+ G
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGI 61
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-- 256
N + + F V++ ++H ++ K DIA++K+ + + +PIC+P +
Sbjct: 62 LNQAEIKEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYADSQRPICLPSKGDR 120
Query: 257 NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC 316
N +D C VTGWG + D I NTL+ A + ++ C+ I M+C
Sbjct: 121 NVIYTD-CWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMIC 173
Query: 317 AGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AGY PL+CK + L G+ SWG+GCA++ +PGVYT V Y WI +
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 377 RIQML 381
+ Q +
Sbjct: 234 KTQAV 238
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVE 153
G N + + F V+
Sbjct: 59 SGILNQAEIKEDTSFFGVQ 77
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 11/245 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGK 198
+ G + ++ + +++ H CGG+II + ILTAAHC G+ K LR+ G
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGI 61
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-- 256
N + + F V++ ++H ++ K DIA++K+ + + +PIC+P +
Sbjct: 62 LNQAEIAEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYADSQRPICLPSKGDR 120
Query: 257 NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC 316
N +D C VTGWG + D I NTL+ A + ++ C+ I M+C
Sbjct: 121 NVIYTD-CWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMIC 173
Query: 317 AGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AGY PL+CK + L G+ SWG+GCA++ +PGVYT V Y WI +
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 377 RIQML 381
+ Q +
Sbjct: 234 KTQAV 238
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVE 153
G N + + F V+
Sbjct: 59 SGILNQAEIAEDTSFFGVQ 77
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 120/218 (55%), Gaps = 14/218 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+++ +LTAAHCL + +R VG N + E +VE V H R
Sbjct: 22 ENEGFCGGTILNEFYVLTAAHCLHQAKRFTVR--VGDRNTEQEEGNEMAHEVEMTVKHSR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F + V P C+P++D A A+ +V+G+G + +
Sbjct: 80 FVKE-TYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQKTGIVSGFGRTHEKG- 137
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
+S+TL+ V +D++TC+ S+ + I +M CAGY P
Sbjct: 138 -RLSSTLKMLEVPYVDRSTCKLSSSF-----TITPNMFCAGYDTQPEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
+ + ++G+VSWG+GCA+K K GVYT+VS + KWI+
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKFGVYTKVSNFLKWID 229
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 11/245 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGK 198
+ G + ++ + +++ H CGG+II + ILTAAHC G+ K LR+ G
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGI 61
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-- 256
N + + F V++ ++H ++ K DIA++K+ + + +PIC+P +
Sbjct: 62 LNQAEIKEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYADSQRPICLPSKGDR 120
Query: 257 NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC 316
N +D C VTGWG + D I NTL+ A + ++ C+ I M+C
Sbjct: 121 NVIYTD-CWVTGWGYRALR--DKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMIC 173
Query: 317 AGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AGY PL+CK + L G+ SWG+GCA++ +PGVYT V Y WI +
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 377 RIQML 381
+ Q +
Sbjct: 234 KTQAV 238
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVE 153
G N + + F V+
Sbjct: 59 SGILNQAEIKEDTSFFGVQ 77
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKG- 137
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
+ S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 138 -EQSTRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKG- 137
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
+ S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 138 -EQSTRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 11/245 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGK 198
+ G + ++ + +++ H CGG+II + ILTAAHC G+ K LR+ G
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGI 61
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-- 256
N + + + F V++ ++H ++ K DIA++K+ + + +PI +P +
Sbjct: 62 LNQSEIKEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYTDSQRPISLPSKGER 120
Query: 257 NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC 316
N +D C VTGWG + D I NTL+ A + ++ C+ I M+C
Sbjct: 121 NVIYTD-CWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMIC 173
Query: 317 AGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AGY PL+CK + L G+ SWG+GCA++ +PGVYT V Y WI +
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 377 RIQML 381
+ Q +
Sbjct: 234 KTQAV 238
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVE 153
G N + + + F V+
Sbjct: 59 SGILNQSEIKEDTSFFGVQ 77
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 138
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 139 Q--STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTAAEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 138
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 139 Q--STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 118/218 (54%), Gaps = 14/218 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 37 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 94
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 95 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 153
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 154 Q--STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 206
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+
Sbjct: 207 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWID 244
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 11/245 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGK 198
+ G + ++ + +++ H CGG+II + ILTAAHC G+ K LR+ G
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGI 61
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-- 256
N + + + F V++ ++H ++ K DIA++K+ + + +PI +P +
Sbjct: 62 LNQSEIKEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYTDSQRPISLPSKGDR 120
Query: 257 NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC 316
N +D C VTGWG + D I NTL+ A + ++ C+ I M+C
Sbjct: 121 NVIYTD-CWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMIC 173
Query: 317 AGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AGY PL+CK + L G+ SWG+GCA++ +PGVYT V Y WI +
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 377 RIQML 381
+ Q +
Sbjct: 234 KTQAV 238
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVE 153
G N + + + F V+
Sbjct: 59 SGILNQSEIKEDTSFFGVQ 77
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 138
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 139 Q--STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 138
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 139 Q--STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 138
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 139 Q--STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDAGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 138
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 139 Q--STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 138
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 139 Q--STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 138
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 139 Q--STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 14/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ E CGG I+S+ ILTAAHCL + K+R VG N + E +VE + H+R
Sbjct: 22 ENEGFCGGTILSEFYILTAAHCLYQAKRFKVR--VGDRNTEQEEGGEAVHEVEVVIKHNR 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC----VVTGWGAQNAESI 277
F KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G + +
Sbjct: 80 FTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 138
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLAC 337
S L+ V +D+N+C+ S+ + I +M CAGY P
Sbjct: 139 Q--STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 17/262 (6%)
Query: 121 HCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTA 180
C Q + + +II G+ ++ + + I R G + CGG+++S +++A
Sbjct: 12 QCGQKTLRPRFKIIGGE--FTTIEN--QPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISA 67
Query: 181 AHCLQGISKSKLRII-VGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG-THSNDIAVVKIR 238
HC K + I+ +G+ LN + E F+VE +LH + + H NDIA++KIR
Sbjct: 68 THCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIR 127
Query: 239 GN----IEFNQYVQPICIPDRDNAAA-SDWCVVTGWGAQNAESIDDI-SNTLRAATVKVI 292
+ ++ +Q IC+P N C +TG+G +N S D + L+ VK+I
Sbjct: 128 SKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEN--STDYLYPEQLKMTVVKLI 185
Query: 293 DQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWG 352
C+ YG+ + MLCA PL C + GR L+G+VSWG
Sbjct: 186 SHRECQQPHYYGS---EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWG 242
Query: 353 DGCAKKNKPGVYTRVSYYTKWI 374
GCA K+KPGVYTRVS++ WI
Sbjct: 243 RGCALKDKPGVYTRVSHFLPWI 264
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 59 CGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILT 118
CG + + KI+GG T PW I R G + CGG+++S +++
Sbjct: 13 CGQKTLR------PRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVIS 66
Query: 119 AAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFKVE 153
A HC K + I+ +G+ LN + E F+VE
Sbjct: 67 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVE 102
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 11/245 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGK 198
+ G + ++ + +++ H CGG+II + ILTAAHC G+ K LR+ G
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGI 61
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-- 256
N + + + F V++ ++H ++ K DIA++K+ + + +PI +P +
Sbjct: 62 LNQSEIAEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYTDSQRPISLPSKGDR 120
Query: 257 NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC 316
N +D C VTGWG + D I NTL+ A + ++ C+ I M+C
Sbjct: 121 NVIYTD-CWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMIC 173
Query: 317 AGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AGY PL+CK + L G+ SWG+GCA++ +PGVYT V Y WI +
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 377 RIQML 381
+ Q +
Sbjct: 234 KTQAV 238
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVE 153
G N + + + F V+
Sbjct: 59 SGILNQSEIAEDTSFFGVQ 77
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG++IS +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q IC+P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G +N S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKEN--STDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG++IS +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG+++S +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q IC+P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G +N S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKEN--STDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG+++S +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG+++S +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q IC+P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G +N S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKEN--STDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG+++S +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 11/243 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGK 198
+ G + ++ + +++ H CGG+II + ILTAAHC G+ K LR+ G
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGI 61
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-- 256
N + + F V++ ++H ++ K DIA++K+ + + +PI +P +
Sbjct: 62 LNQAEIKEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYADSQRPISLPSKGDR 120
Query: 257 NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC 316
N +D C VTGWG + D I NTL+ A + ++ C+ I M+C
Sbjct: 121 NVIYTD-CWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMIC 173
Query: 317 AGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AGY PL+CK + L G+ SWG+GCA++ +PGVYT V Y WI +
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 377 RIQ 379
+ Q
Sbjct: 234 KTQ 236
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVE 153
G N + + F V+
Sbjct: 59 SGILNQAEIKEDTSFFGVQ 77
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 120/245 (48%), Gaps = 11/245 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGK 198
+ G + ++ + +++ H CGG+II + ILTAAHC G+ K LR+ G
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGI 61
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-- 256
N + + F V++ ++H ++ K DIA++K+ + + +PI +P +
Sbjct: 62 LNQAEIAEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYADSQRPISLPSKGDR 120
Query: 257 NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC 316
N +D C VTGWG + D I NTL+ A + ++ C+ I M+C
Sbjct: 121 NVIYTD-CWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMIC 173
Query: 317 AGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AGY PL+CK + L G+ SWG+GCA++ +PGVYT V Y WI +
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 377 RIQML 381
+ Q +
Sbjct: 234 KTQAV 238
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVE 153
G N + + F V+
Sbjct: 59 SGILNQAEIAEDTSFFGVQ 77
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 11/243 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGK 198
+ G + ++ + +++ H CGG+II + ILTAAHC G+ K LR+ G
Sbjct: 2 VGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGI 61
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-- 256
N + + F V++ ++H ++ K DIA++K+ + + +PI +P +
Sbjct: 62 LNQAEIAEDTSFFGVQEIIIHDQY-KMAESGYDIALLKLETTVNYADSQRPISLPSKGDR 120
Query: 257 NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC 316
N +D C VTGWG + D I NTL+ A + ++ C+ I M+C
Sbjct: 121 NVIYTD-CWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMIC 173
Query: 317 AGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AGY PL+CK + L G+ SWG+GCA++ +PGVYT V Y WI +
Sbjct: 174 AGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233
Query: 377 RIQ 379
+ Q
Sbjct: 234 KTQ 236
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ K LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVE 153
G N + + F V+
Sbjct: 59 SGILNQAEIAEDTSFFGVQ 77
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG+++S +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q IC+P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G + +S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKE--QSTDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG+++S +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 11/228 (4%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG+++S +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q IC+P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
TG+G + A + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFG-KEASTDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTDS 193
Query: 327 XXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 194 CQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG+++S +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 11/228 (4%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG+++S +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q IC+P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
TG+G + A + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFG-KEASTDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTDS 193
Query: 327 XXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 194 CQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG+++S +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 11/228 (4%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG+++S +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q IC+P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
TG+G + A + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFG-KEASTDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTDA 193
Query: 327 XXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 194 CQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG+++S +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 128/262 (48%), Gaps = 17/262 (6%)
Query: 121 HCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTA 180
C Q + + +II G+ ++ + + I R G + CGG++IS +++A
Sbjct: 4 QCGQKTLRPRFKIIGGE--FTTIEN--QPWFAAIYRRHRGGSVTYVCGGSLISPCWVISA 59
Query: 181 AHCLQGISKSKLRII-VGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG-THSNDIAVVKIR 238
HC K + I+ +G+ LN + E F+VE +LH + + H NDIA++KIR
Sbjct: 60 THCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIR 119
Query: 239 GN----IEFNQYVQPICIPDRDNAAA-SDWCVVTGWGAQNAESIDDI-SNTLRAATVKVI 292
+ ++ +Q I +P N C +TG+G +N S D + L+ VK+I
Sbjct: 120 SKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKEN--STDYLYPEQLKMTVVKLI 177
Query: 293 DQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWG 352
C+ YG+ + MLCA PL C + GR L+G+VSWG
Sbjct: 178 SHRECQQPHYYGS---EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWG 234
Query: 353 DGCAKKNKPGVYTRVSYYTKWI 374
GCA K+KPGVYTRVS++ WI
Sbjct: 235 RGCALKDKPGVYTRVSHFLPWI 256
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 59 CGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILT 118
CG + + KI+GG T PW I R G + CGG++IS +++
Sbjct: 5 CGQKTLR------PRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVIS 58
Query: 119 AAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFKVE 153
A HC K + I+ +G+ LN + E F+VE
Sbjct: 59 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVE 94
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG++IS +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q I +P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G +N S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKEN--STDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG++IS +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG++IS +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q I +P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G +N S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKEN--STDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG++IS +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG++IS +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q I +P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G +N S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKEN--STDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG++IS +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F +E T++NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRE-TYNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S+ + I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASSSF-----IITDNMVCVGFLEGGKDACQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV S G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+HN+N ++ E+
Sbjct: 51 GEHNINVLEGNEQ 63
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I++ +++A HC KS++++ +G+HN+ ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINEQWVVSAGHCY----KSRIQVRLGEHNIEVLEGNEQFINA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H ++ ++ T +NDI ++K+ N +V I +P A + C+++GWG
Sbjct: 68 AKIIRHPQYDRK-TLNNDIMLIKLSSRAVINAHVSTISLPTAPPATGTK-CLISGWG-NT 124
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
A S D + L+ V+ Q C +S I +M C G+L
Sbjct: 125 ASSGADYPDELQCLDAPVLSQAKCEASYP-----GKITSNMFCVGFLEGGKDSCQGDAGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L GVVSWGDGCA+KNKPGVYT+V Y KWI + I
Sbjct: 180 PVVCN--GQ--LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 220
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++I++ +++A HC KS++++ +
Sbjct: 1 IVGGYNCEENSVPYQVSLN------SGYHFCGGSLINEQWVVSAGHCY----KSRIQVRL 50
Query: 136 GKHN---LNGVDKFEKTFKV 152
G+HN L G ++F K+
Sbjct: 51 GEHNIEVLEGNEQFINAAKI 70
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG+++S +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q I +P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G +N S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKEN--STDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG+++S +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG++IS +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q I +P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G + +S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKE--QSTDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG++IS +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG++IS +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q I +P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G + +S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKE--QSTDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDAGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG++IS +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII-VGKHNLNGVDKFEKTFK 212
I R G + CGG++IS +++A HC K + I+ +G+ LN + E F+
Sbjct: 18 IYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFE 77
Query: 213 VEKAVLHHRFRKEG-THSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAA-SDWCVV 266
VE +LH + + H NDIA++KIR + ++ +Q I +P N C +
Sbjct: 78 VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEI 137
Query: 267 TGWGAQNAESIDDI-SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXX 325
TG+G + +S D + L+ VK+I C+ YG+ + MLCA
Sbjct: 138 TGFGKE--QSTDYLYPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTD 192
Query: 326 XXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C + GR L+G+VSWG GCA K+KPGVYTRVS++ WI
Sbjct: 193 SCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII- 134
I+GG T PW I R G + CGG++IS +++A HC K + I+
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G+ LN + E F+VE
Sbjct: 61 LGRSRLNSNTQGEMKFEVE 79
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 125/245 (51%), Gaps = 25/245 (10%)
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLR 193
IVG +N E + ++ + S G H CGG++I++ +++A HC KS+++
Sbjct: 1 IVGGYNCE-----ENSVPYQVSLNS----GYHFCGGSLINEQWVVSAGHCY----KSRIQ 47
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP 253
+ +G+HN+ ++ E+ K + H ++ ++ T +NDI ++K+ N V I +P
Sbjct: 48 VRLGEHNIEVLEGNEQFINAAKIIRHPQYDRK-TLNNDIMLIKLSSRAVINARVSTISLP 106
Query: 254 DRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDS 313
A + C+++GWG A S D + L+ V+ Q C +S I +
Sbjct: 107 TAPPATGTK-CLISGWG-NTASSGADXPDELQCLDAPVLSQAKCEASYP-----GKITSN 159
Query: 314 MLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKW 373
M C G+L P+ C G+ L GVVSWGDGCA+KNKPGVYT+V Y KW
Sbjct: 160 MFCVGFLEGGKDSCQGDSGGPVVCN--GQ--LQGVVSWGDGCAQKNKPGVYTKVYNYVKW 215
Query: 374 INDRI 378
I + I
Sbjct: 216 IKNTI 220
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++I++ +++A HC KS++++ +
Sbjct: 1 IVGGYNCEENSVPYQVSLN------SGYHFCGGSLINEQWVVSAGHCY----KSRIQVRL 50
Query: 136 GKHN---LNGVDKFEKTFKV 152
G+HN L G ++F K+
Sbjct: 51 GEHNIEVLEGNEQFINAAKI 70
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F +E T++NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRE-TYNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV S G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 18/226 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++IS+ +++AAHC K+++++ +G+HN+ ++ E+
Sbjct: 12 LPYQVSLNSGSHFCGGSLISEQWVVSAAHCY----KTRIQVRLGEHNIKVLEGNEQFINA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H ++ ++ T NDI ++K+ N V I +P AA ++ C+++GWG N
Sbjct: 68 AKIIRHPKYNRD-TLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTE-CLISGWG--N 123
Query: 274 AESID-DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
S D + L+ V+ Q C++S I +SM C G+L
Sbjct: 124 TLSFGADYPDELKCLDAPVLTQAECKAS-----YPGKITNSMFCVGFLEGGKDSCQRDAG 178
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L GVVSWG GCA KN+PGVYT+V Y WI D I
Sbjct: 179 GPVVCN--GQ--LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++IS+ +++AAHC K+++++ +
Sbjct: 1 IVGGYTCEENSLPYQVSLN------SGSHFCGGSLISEQWVVSAAHCY----KTRIQVRL 50
Query: 136 GKHN---LNGVDKFEKTFKV 152
G+HN L G ++F K+
Sbjct: 51 GEHNIKVLEGNEQFINAAKI 70
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 18/226 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++IS+ +++AAHC K+++++ +G+HN+ ++ E+
Sbjct: 12 LPYQVSLNSGYHFCGGSLISEQWVVSAAHCY----KTRIQVRLGEHNIKVLEGNEQFINA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H ++ ++ T NDI ++K+ N V I +P AA ++ C+++GWG N
Sbjct: 68 AKIIRHPKYNRD-TLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTE-CLISGWG--N 123
Query: 274 AESID-DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
S D + L+ V+ Q C++S I +SM C G+L
Sbjct: 124 TLSFGADYPDELKCLDAPVLTQAECKAS-----YPGKITNSMFCVGFLEGGKDSCQRDAG 178
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L GVVSWG GCA KN+PGVYT+V Y WI D I
Sbjct: 179 GPVVCN--GQ--LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++IS+ +++AAHC K+++++ +
Sbjct: 1 IVGGYTCEENSLPYQVSLN------SGYHFCGGSLISEQWVVSAAHCY----KTRIQVRL 50
Query: 136 GKHN---LNGVDKFEKTFKV 152
G+HN L G ++F K+
Sbjct: 51 GEHNIKVLEGNEQFINAAKI 70
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 109/232 (46%), Gaps = 15/232 (6%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVG---KHNLNGVDKFEKTFKVEKAV 217
G H CGG+++S +LTAAHC ++ S+ R+ G + + +G+ +
Sbjct: 139 GAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGY 198
Query: 218 LHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS-DWCVVTGWGAQNAES 276
L R +SNDIA+V + + +Y+QP+C+P A C VTGWG N +
Sbjct: 199 LPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWG--NTQY 256
Query: 277 IDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLA 336
+ L+ A V +I + C + YGN I M CAGY P
Sbjct: 257 YGQQAGVLQEARVPIISNDVCNGADFYGN---QIKPKMFCAGYPEGGIDACQGDSGGPFV 313
Query: 337 CKIG----GRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQET 384
C+ R+ L G+VSWG GCA KPGVYT+VS + +WI I+ E
Sbjct: 314 CEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEA 365
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLR 132
+IVGG T G +PWQV ++ G H CGG+++S +LTAAHC ++ S+ R
Sbjct: 117 RIVGGRDTSLGRWPWQVSLRY-----DGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWR 171
Query: 133 IIVG 136
+ G
Sbjct: 172 VFAG 175
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 109/232 (46%), Gaps = 15/232 (6%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVG---KHNLNGVDKFEKTFKVEKAV 217
G H CGG+++S +LTAAHC ++ S+ R+ G + + +G+ +
Sbjct: 22 GAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGY 81
Query: 218 LHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAA-SDWCVVTGWGAQNAES 276
L R +SNDIA+V + + +Y+QP+C+P A C VTGWG N +
Sbjct: 82 LPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWG--NTQY 139
Query: 277 IDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLA 336
+ L+ A V +I + C + YGN I M CAGY P
Sbjct: 140 YGQQAGVLQEARVPIISNDVCNGADFYGN---QIKPKMFCAGYPEGGIDACQGDSGGPFV 196
Query: 337 CKIG----GRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQET 384
C+ R+ L G+VSWG GCA KPGVYT+VS + +WI I+ E
Sbjct: 197 CEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEA 248
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRI 133
IVGG T G +PWQV ++ G H CGG+++S +LTAAHC ++ S+ R+
Sbjct: 1 IVGGRDTSLGRWPWQVSLRY-----DGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRV 55
Query: 134 IVG 136
G
Sbjct: 56 FAG 58
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKA---PILSTSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant
Length = 229
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + K +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNKR-RKNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAP---ILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 109/232 (46%), Gaps = 15/232 (6%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVG---KHNLNGVDKFEKTFKVEKAV 217
G H CGG+++S +LTAAHC ++ S+ R+ G + + +G+ +
Sbjct: 139 GAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGY 198
Query: 218 LHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS-DWCVVTGWGAQNAES 276
L R +SNDIA+V + + +Y+QP+C+P A C VTGWG N +
Sbjct: 199 LPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWG--NTQY 256
Query: 277 IDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLA 336
+ L+ A V +I + C + YGN I M CAGY P
Sbjct: 257 YGQQAGVLQEARVPIISNDVCNGADFYGN---QIKPKMFCAGYPEGGIDACQGDSGGPFV 313
Query: 337 CKIG----GRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQET 384
C+ R+ L G+VSWG GCA KPGVYT+VS + +WI I+ E
Sbjct: 314 CEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEA 365
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLR 132
+IVGG T G +PWQV ++ G H CGG+++S +LTAAHC ++ S+ R
Sbjct: 117 RIVGGRDTSLGRWPWQVSLRY-----DGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWR 171
Query: 133 IIVG 136
+ G
Sbjct: 172 VFAG 175
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 18/226 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++IS+ +++AAHC K+++++ +G+HN+ ++ E+
Sbjct: 12 LPYQVSLNSGSHFCGGSLISEQWVVSAAHCY----KTRIQVRLGEHNIKVLEGNEQFINA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H ++ ++ T NDI ++K+ N V I +P AA ++ C+++GWG N
Sbjct: 68 VKIIRHPKYNRD-TLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTE-CLISGWG--N 123
Query: 274 AESID-DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
S D + L+ V+ Q C++S I +SM C G+L
Sbjct: 124 TLSFGADYPDELKCLDAPVLTQAECKASY-----PGKITNSMFCVGFLEGGKDSCQRDSG 178
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L GVVSWG GCA KN+PGVYT+V Y WI D I
Sbjct: 179 GPVVCN--GQ--LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++IS+ +++AAHC K+++++ +
Sbjct: 1 IVGGYTCEENSLPYQVSLN------SGSHFCGGSLISEQWVVSAAHCY----KTRIQVRL 50
Query: 136 GKHN---LNGVDKFEKTFKV 152
G+HN L G ++F K+
Sbjct: 51 GEHNIKVLEGNEQFINAVKI 70
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 32 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 87
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 88 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 145
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 146 SSGTSYPDVLKCLKA---PILSDSSCKSAY-----PGQITSNMFCAGYLEGGKDSCQGDA 197
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 198 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 240
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 32 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 87
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 88 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 145
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 146 SSGTSYPDVLKCLKA---PILSDSSCKSAY-----PGQITSNMFCAGYLEGGKDSCQGDS 197
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 198 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 240
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 26 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 81
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 82 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 139
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 140 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDS 191
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 192 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 234
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDX 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 16/228 (7%)
Query: 151 KVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT 210
K ++S G H CGG++IS T +++AAHC KS++++ +G+HN+ + E+
Sbjct: 9 KNSASYQASLQSGYHFCGGSLISSTWVVSAAHCY----KSRIQVRLGEHNIAVNEGTEQF 64
Query: 211 FKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG 270
K ++H + NDI ++K+ N YV + +P A++ C+V+GWG
Sbjct: 65 IDSVKVIMHPSYNSRNLD-NDIMLIKLSKPASLNSYVSTVALPS-SCASSGTRCLVSGWG 122
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXX 330
+ S + +TLR + ++ ++C S+ I +M CAG++
Sbjct: 123 NLSGSS-SNYPDTLRCLDLPILSSSSCNSAYP-----GQITSNMFCAGFMEGGKDSCQGD 176
Query: 331 XXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L GVVSWG GCA++NKPGVYT+V Y WI+ +
Sbjct: 177 SGGPVVCN--GQ--LQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTM 220
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + +Q +Q G H CGG++IS T +++AAHC KS++++ +
Sbjct: 1 IVGGYECRKNSASYQASLQ------SGYHFCGGSLISSTWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNL---NGVDKFEKTFKV 152
G+HN+ G ++F + KV
Sbjct: 51 GEHNIAVNEGTEQFIDSVKV 70
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V + +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASVSLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCA--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 17 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 72
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 73 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 130
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 131 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDS 182
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 183 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 225
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 18 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 73
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 74 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 131
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 132 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDS 183
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 184 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 226
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 153 EIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFK 212
I + S G H CGG++I+ +++AAHC KS++++ +G+HN++ ++ E+
Sbjct: 11 SIPYQVSLNSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNIDVLEGNEQFIN 66
Query: 213 VEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQ 272
K + H F T NDI ++K+ N V + +P R AAA C+++GWG
Sbjct: 67 AAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWG-N 123
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
S + L+ V+ ++C+SS I +M+C G+L
Sbjct: 124 TKSSGSSYPSLLQCLKAPVLSNSSCKSSYP-----GQITGNMICVGFLQGGKDSCQGDSG 178
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 179 GPVVCN--GQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 153 EIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFK 212
I + S G H CGG++I+ +++AAHC KS++++ +G+HN++ ++ E+
Sbjct: 11 SIPYQVSLNSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNIDVLEGNEQFIN 66
Query: 213 VEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQ 272
K + H F T NDI ++K+ N V + +P R AAA C+++GWG
Sbjct: 67 AAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWG-N 123
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
S + L+ V+ ++C+SS I +M+C G+L
Sbjct: 124 TKSSGSSYPSLLQCLKAPVLSDSSCKSSYP-----GQITGNMICVGFLEGGKDSCQGDSG 178
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 179 GPVVCN--GQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 153 EIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFK 212
I + S G H CGG++I+ +++AAHC KS++++ +G+HN++ ++ E+
Sbjct: 11 SIPYQVSLNSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNIDVLEGNEQFIN 66
Query: 213 VEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQ 272
K + H F T NDI ++K+ N V + +P R AAA C+++GWG
Sbjct: 67 AAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWG-N 123
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
S + L+ V+ ++C+SS I +M+C G+L
Sbjct: 124 TKSSGSSYPSLLQCLKAPVLSDSSCKSSYP-----GQITGNMICVGFLEGGKDSCQGDSG 178
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 179 GPVVCN--GQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 34 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 89
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N +V + +P A A C+++GWG
Sbjct: 90 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNAHVATVALPSS-CAPAGTQCLISGWGNTL 147
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 148 SSGVNE-PDLLQCLDAPLLPQADCEAS-----YPGKITDNMVCVGFLEGGKDSCQGDSGG 201
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 202 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 242
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 10/74 (13%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 134
KIVGG + + P+QV S G H CGG++I+D +++AAHC KS++++
Sbjct: 22 KIVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVR 71
Query: 135 VGKHNLNGVDKFEK 148
+G+HN+N ++ E+
Sbjct: 72 LGEHNINVLEGNEQ 85
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 153 EIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFK 212
I + S G H CGG++I+ +++AAHC KS++++ +G+HN++ ++ E+
Sbjct: 19 SIPYQVSLNSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNIDVLEGNEQFIN 74
Query: 213 VEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQ 272
K + H F T NDI ++K+ N V + +P R AAA C+++GWG
Sbjct: 75 AAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWG-N 131
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
S + L+ V+ ++C+SS I +M+C G+L
Sbjct: 132 TKSSGSSYPSLLQCLKAPVLSDSSCKSSYP-----GQITGNMICVGFLEGGKDSCQGDSG 186
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 187 GPVVCN--GQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 228
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG+GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDA 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG+GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 20 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 75
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 76 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 133
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 134 SSGVNE-PDLLKCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 187
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 188 PVVC----NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 228
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 78 GGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGK 137
GG + + P+QV S G H CGG++I+D +++AAHC KS++++ +G+
Sbjct: 11 GGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGE 60
Query: 138 HNLN---GVDKFEKTFKV 152
HN+N G ++F K+
Sbjct: 61 HNINVLEGNEQFVNAAKI 78
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLIDSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ + V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYDSN-TLNNDIMLIKLKSAASLDSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKA---PILSDSSCKSAY-----PGQITSNMFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 77 VGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVG 136
VGG + P+QV + G H CGG++I +++AAHC KS +++ +G
Sbjct: 2 VGGYTCGANTVPYQVSLN------SGYHFCGGSLIDSQWVVSAAHCY----KSGIQVRLG 51
Query: 137 KHNLNGVDKFEK 148
+ N+N V+ E+
Sbjct: 52 EDNINVVEGNEQ 63
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG+GCA+KNKPG+YT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGEGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKSSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQVSLN------SGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLXSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV S G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 115/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDA 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEAS-----YPGKITDNMVCVGFLEGGKDSCQGDAGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV S G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 22 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 77
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 78 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 135
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 136 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDAGG 189
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 190 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 230
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 10/74 (13%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 134
KIVGG + + P+QV S G H CGG++I+D +++AAHC KS++++
Sbjct: 10 KIVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVR 59
Query: 135 VGKHNLNGVDKFEK 148
+G+HN+N ++ E+
Sbjct: 60 LGEHNINVLEGNEQ 73
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 20 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 75
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 76 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 133
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 134 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 187
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 188 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 228
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 78 GGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGK 137
GG + + P+QV S G H CGG++I+D +++AAHC KS++++ +G+
Sbjct: 11 GGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGE 60
Query: 138 HNLN---GVDKFEKTFKV 152
HN+N G ++F K+
Sbjct: 61 HNINVLEGNEQFVNAAKI 78
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 20 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 75
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 76 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 133
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 134 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGNSGG 187
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 188 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 228
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 78 GGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGK 137
GG + + P+QV S G H CGG++I+D +++AAHC KS++++ +G+
Sbjct: 11 GGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGE 60
Query: 138 HNLN---GVDKFEKTFKV 152
HN+N G ++F K+
Sbjct: 61 HNINVLEGNEQFVNAAKI 78
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 115/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 22 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 77
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 78 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 135
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 136 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 189
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 190 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 230
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV S G H CGG++I+D +++AAHC KS++++ +
Sbjct: 11 IVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 60
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 61 GEHNINVLEGNEQFVNAAKI 80
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 153 EIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFK 212
+ + S G H CGG++I+ +++AAHC KS++++ +G+HN++ ++ E+
Sbjct: 11 SVPYQVSLNSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNIDVLEGNEQFIN 66
Query: 213 VEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQ 272
K + H F T NDI ++K+ N V + +P R AAA C+++GWG
Sbjct: 67 AAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWG-N 123
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
S + L+ V+ ++C+S+ I +M+C G+L
Sbjct: 124 TKSSGSSYPSLLQCLKAPVLSDSSCKSAYP-----GQITGNMICVGFLEGGKDSCQGDSG 178
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 179 GPVVCN--GQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDCGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV S G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPG+YT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHC----XKSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S A G I +M CAG L
Sbjct: 126 SSGTSXPDVLKCLKA---PILSDSSCKS-AYPGQ----ITSNMFCAGXLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V I +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATIALPSS-CAPAGTQCLISGWGHTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ ++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNH-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQVSLN------SGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+HN+N ++ E+
Sbjct: 51 GEHNINVLEGNEQ 63
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDA 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG+GCA+KNKPG YT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 16/226 (7%)
Query: 153 EIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFK 212
I + S G H CGG++I+ +++AAHC KS++++ +G+HN++ ++ E+
Sbjct: 11 SIPYQVSLNSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNIDVLEGNEQFIN 66
Query: 213 VEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQ 272
K + H F T NDI ++K+ V + +P R AAA C+++GWG
Sbjct: 67 AAKIITHPNFNGN-TLDNDIMLIKLSSPATLXSRVATVSLP-RSCAAAGTECLISGWG-N 123
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
S + L+ V+ ++C+SS I +M+C G+L
Sbjct: 124 TKSSGSSYPSLLQCLKAPVLSDSSCKSSYP-----GQITGNMICVGFLEGGKDSCQGDSG 178
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 179 GPVVCN--GQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F + T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDHK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQVSLN------SGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1EAI|B Chain B, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1C1M|A Chain A, Porcine Elastase Under Xenon Pressure (8 Bar)
pdb|1HV7|A Chain A, Porcine Pancreatic Elastase Complexed With Gw311616a
pdb|1FZZ|A Chain A, The Crystal Structure Of The Complex Of Non-Peptidic
Inhibitor Ono-6818 And Porcine Pancreatic Elastase.
pdb|1GWA|A Chain A, Triiodide Derivative Of Porcine Pancreas Elastase
pdb|1L0Z|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Dry Paraffin
Oil
pdb|1L1G|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Glycerol
pdb|1LKA|A Chain A, Porcine Pancreatic ElastaseCA-Complex
pdb|1LKB|A Chain A, Porcine Pancreatic Elastase/na-complex
pdb|1MMJ|N Chain N, Porcine Pancreatic Elastase Complexed With A Potent
Peptidyl Inhibitor, Fr136706
pdb|1MCV|A Chain A, Crystal Structure Analysis Of A Hybrid Squash Inhibitor In
Complex With Porcine Pancreatic Elastase
pdb|1UO6|A Chain A, Porcine Pancreatic ElastaseXE-Complex
pdb|1UVO|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(crystal A)
pdb|1UVP|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(Crystal B)
pdb|2A7C|A Chain A, On The Routine Use Of Soft X-rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2A7J|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2BLO|A Chain A, Elastase Before A High Dose X-Ray "burn"
pdb|2BLQ|A Chain A, Elastase After A High Dose X-Ray "burn"
pdb|2D26|C Chain C, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
pdb|2CV3|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With A Macroclyclic Peptide Inhibitor
pdb|2DE8|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With A
Unique Conformation Induced By Tris
pdb|2DE9|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With Tris After Soaking A Tris-Free Solution
pdb|2G4T|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastase (na)
pdb|2G4U|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastaase
(ca)
pdb|2OQU|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1QNJ|A Chain A, The Structure Of Native Porcine Pancreatic Elastase At
Atomic Resolution (1.1 A)
pdb|2IOT|A Chain A, Clavulanic Acid Bound To Elastase
pdb|2V0B|A Chain A, Sad Structure Solution Porcine Pancreatic Elastase From A
Selenate Derivative
pdb|2V35|A Chain A, Porcine Pancreatic Elastase In Complex With Inhibitor Jm54
pdb|3HGP|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By High
Resolution Crystallography
pdb|3HGN|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By Neutron
Crystallography
pdb|3UOU|A Chain A, Crystal Structure Of The Kunitz-Type Protease Inhibitor
Shpi-1 Lys13leu Mutant In Complex With Pancreatic
Elastase
Length = 240
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 13/232 (5%)
Query: 151 KVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT 210
++ +Q RS + H CGG +I ++TAAHC+ + R++VG+HNLN D E+
Sbjct: 15 QISLQYRSGSSWA-HTCGGTLIRQNWVMTAAHCVD--RELTFRVVVGEHNLNQNDGTEQY 71
Query: 211 FKVEKAVLHHRFRKEGTHSN-DIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTG 268
V+K V+H + + + DIA++++ ++ N YVQ +P A++ C +TG
Sbjct: 72 VGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITG 131
Query: 269 WGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
WG ++ TL+ A + +D C SS+ +G++ +N SM+CAG +
Sbjct: 132 WGLTRTNG--QLAQTLQQAYLPTVDYAICSSSSYWGSTVKN---SMVCAGG-DGVRSGCQ 185
Query: 329 XXXXXPLACKIGGRFVLSGVVSWGD--GCAKKNKPGVYTRVSYYTKWINDRI 378
PL C + G++ + GV S+ GC KP V+TRVS Y WIN+ I
Sbjct: 186 GDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+VGGT ++P Q+ +Q RS + H CGG +I ++TAAHC+ + R++V
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWA-HTCGGTLIRQNWVMTAAHCVD--RELTFRVVV 57
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+HNLN D E+ V+
Sbjct: 58 GEHNLNQNDGTEQYVGVQ 75
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++++ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLLNSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPG+YT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++++ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLLNSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGHTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ ++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNH-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQVSLN------SGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+V WG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVEWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV S G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPG YT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPG YT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+V WG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVKWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV S G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GCA+K K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCARKGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDA 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPG YT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 118/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + KPG YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +N+I ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNNIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQVSLN------SGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGDEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +N+I ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNNIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKDSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + PGVYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV S G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGDEQFVNAAKI 70
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 20/236 (8%)
Query: 157 RSSTGQGEHQCGGAIISDTVILTAAHCLQG-ISKSKLRIIVGKHNLNGVDKFEKTFKVEK 215
R S G+ CGG +IS IL+AAHC Q L +I+G+ + E+ F+VEK
Sbjct: 36 RRSPGE-RFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEK 94
Query: 216 AVLHHRFRKEGTHSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAASDW--CVVTGW 269
++H F + T+ NDIA+++++ + + + V+ +C+P D DW C ++G+
Sbjct: 95 YIVHKEF-DDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPAD-LQLPDWTECELSGY 152
Query: 270 GAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXX 329
G A S S L+ A V++ + C S + N+ + D+MLCAG
Sbjct: 153 GKHEALS-PFYSERLKEAHVRLYPSSRCTSQHLL---NRTVTDNMLCAGDTRSGGPQANL 208
Query: 330 XXX------XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C GR L G++SWG GC +K+ PGVYT+V+ Y WI D ++
Sbjct: 209 HDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMR 264
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 58 TCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEH-QCGGAIISDTVI 116
TCG R + +PQ +I GG ++PWQ I + GE CGG +IS I
Sbjct: 1 TCGLRQYS-QPQ----FRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWI 55
Query: 117 LTAAHCLQG-ISKSKLRIIVGKHNLNGVDKFEKTFKVE 153
L+AAHC Q L +I+G+ + E+ F+VE
Sbjct: 56 LSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVE 93
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 22/240 (9%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQ-GISKSKLRIIVGKHNLNGVDKFEKTFKV 213
Q R S+G+ CGG +IS +LTAAHC Q +L++++G+ + E+TFKV
Sbjct: 34 QNRRSSGE-RFLCGGILISSCWVLTAAHCFQESYLPDQLKVVLGRTYRVKPGEEEQTFKV 92
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAASDW--CVVT 267
+K ++H F + T++NDIA+++++ + + + V+ IC+P+ N DW C ++
Sbjct: 93 KKYIVHKEF-DDDTYNNDIALLQLKSDSPQCAQESDSVRAICLPEA-NLQLPDWTECELS 150
Query: 268 GWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAG-------YL 320
G+G + S S L+ V++ + C ++ N+ + ++MLCAG Y
Sbjct: 151 GYGKHKSSS-PFYSEQLKEGHVRLYPSSRCAPKFLF---NKTVTNNMLCAGDTRSGEIYP 206
Query: 321 NXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
N PL C L G++SWG GC +K+ PGVYT+V+ Y WI D + +
Sbjct: 207 NVHDACQGDSGG-PLVCMNDNHMTLLGIISWGVGCGEKDVPGVYTKVTNYLGWIRDNMHL 265
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 58 TCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEH-QCGGAIISDTVI 116
TCG R EPQ + GG T ++PWQ I ++ GE CGG +IS +
Sbjct: 1 TCGLRKYK-EPQ----LHSTGGLFTDITSHPWQAAIFAQNRRSSGERFLCGGILISSCWV 55
Query: 117 LTAAHCLQ-GISKSKLRIIVGKHNLNGVDKFEKTFKVE 153
LTAAHC Q +L++++G+ + E+TFKV+
Sbjct: 56 LTAAHCFQESYLPDQLKVVLGRTYRVKPGEEEQTFKVK 93
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 13/246 (5%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVG 197
+ G + + ++ +R H CGG++I +LTAAHC+ K + LR+ +
Sbjct: 2 VGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLR 61
Query: 198 KHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN 257
+ +L D+ V + ++H +F DIA++++ ++ + +V + +P
Sbjct: 62 EQHLYYQDQL---LPVSRIIVHPQFYTAQI-GADIALLELEEPVKVSSHVHTVTLPPASE 117
Query: 258 AAASDW-CVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSS----AVYGNSNQNILD 312
C VTGWG + + L+ V +++ + C + A G+ + + D
Sbjct: 118 TFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRD 177
Query: 313 SMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTK 372
MLCAG N PL CK+ G ++ +GVVSWG+GCA+ N+PG+YTRV+YY
Sbjct: 178 DMLCAG--NTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLD 235
Query: 373 WINDRI 378
WI+ +
Sbjct: 236 WIHHYV 241
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRI 133
IVGG P +PWQV ++V H CGG++I +LTAAHC+ K + LR+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWM--HFCGGSLIHPQWVLTAAHCVGPDVKDLAALRV 58
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQ 162
+ + +L D+ ++ + + T Q
Sbjct: 59 QLREQHLYYQDQLLPVSRIIVHPQFYTAQ 87
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 20/236 (8%)
Query: 157 RSSTGQGEHQCGGAIISDTVILTAAHCLQG-ISKSKLRIIVGKHNLNGVDKFEKTFKVEK 215
R S G+ CGG +IS IL+AAHC Q L +I+G+ + E+ F+VEK
Sbjct: 23 RRSPGE-RFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEK 81
Query: 216 AVLHHRFRKEGTHSNDIAVVKIRGN----IEFNQYVQPICIPDRDNAAASDW--CVVTGW 269
++H F + T+ NDIA+++++ + + + V+ +C+P D DW C ++G+
Sbjct: 82 YIVHKEF-DDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPAD-LQLPDWTECELSGY 139
Query: 270 GAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXX 329
G A S S L+ A V++ + C S + N+ + D+MLCAG
Sbjct: 140 GKHEALS-PFYSERLKEAHVRLYPSSRCTSQHLL---NRTVTDNMLCAGDTRSGGPQANL 195
Query: 330 XXX------XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C GR L G++SWG GC +K+ PGVYT+V+ Y WI D ++
Sbjct: 196 HDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMR 251
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEH-QCGGAIISDTVILTAAHCLQG-ISKSKLRI 133
I GG ++PWQ I + GE CGG +IS IL+AAHC Q L +
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 134 IVGKHNLNGVDKFEKTFKVE 153
I+G+ + E+ F+VE
Sbjct: 61 ILGRTYRVVPGEEEQKFEVE 80
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 13/246 (5%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVG 197
+ G + + ++ +R H CGG++I +LTAAHC+ K + LR+ +
Sbjct: 2 VGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLR 61
Query: 198 KHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN 257
+ +L D+ V + ++H +F DIA++++ ++ + +V + +P
Sbjct: 62 EQHLYYQDQL---LPVSRIIVHPQFYTAQI-GADIALLELEEPVKVSSHVHTVTLPPASE 117
Query: 258 AAASDW-CVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSS----AVYGNSNQNILD 312
C VTGWG + + L+ V +++ + C + A G+ + + D
Sbjct: 118 TFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRD 177
Query: 313 SMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTK 372
MLCAG N PL CK+ G ++ +GVVSWG+GCA+ N+PG+YTRV+YY
Sbjct: 178 DMLCAG--NTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLD 235
Query: 373 WINDRI 378
WI+ +
Sbjct: 236 WIHHYV 241
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRI 133
IVGG P +PWQV ++V H CGG++I +LTAAHC+ K + LR+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWM--HFCGGSLIHPQWVLTAAHCVGPDVKDLAALRV 58
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQ 162
+ + +L D+ ++ + + T Q
Sbjct: 59 QLREQHLYYQDQLLPVSRIIVHPQFYTAQ 87
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 13/246 (5%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVG 197
+ G + + ++ +R H CGG++I +LTAAHC+ K + LR+ +
Sbjct: 2 VGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLR 61
Query: 198 KHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN 257
+ +L D+ V + ++H +F DIA++++ ++ + +V + +P
Sbjct: 62 EQHLYYQDQL---LPVSRIIVHPQFYTAQI-GADIALLELEEPVKVSSHVHTVTLPPASE 117
Query: 258 AAASDW-CVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSS----AVYGNSNQNILD 312
C VTGWG + + L+ V +++ + C + A G+ + + D
Sbjct: 118 TFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRD 177
Query: 313 SMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTK 372
MLCAG N PL CK+ G ++ +GVVSWG+GCA+ N+PG+YTRV+YY
Sbjct: 178 DMLCAG--NTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLD 235
Query: 373 WINDRI 378
WI+ +
Sbjct: 236 WIHHYV 241
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRI 133
IVGG P +PWQV ++V H CGG++I +LTAAHC+ K + LR+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWM--HFCGGSLIHPQWVLTAAHCVGPDVKDLAALRV 58
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQ 162
+ + +L D+ ++ + + T Q
Sbjct: 59 QLREQHLYYQDQLLPVSRIIVHPQFYTAQ 87
>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
Length = 245
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 15/234 (6%)
Query: 149 TFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVGKHNLNGVDK 206
++V ++VR H CGG++I +LTAAHC+ K + LR+ + + +L D+
Sbjct: 13 PWQVSLRVRDRYWM--HFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYYQDQ 70
Query: 207 FEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CV 265
V + ++H +F T + DIA++++ + + V + +P C
Sbjct: 71 L---LPVSRIIVHPQFYIIQTGA-DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCW 126
Query: 266 VTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSS----AVYGNSNQNILDSMLCAGYLN 321
VTGWG + + L+ V +++ + C + A G+ + I D MLCAG N
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--N 184
Query: 322 XXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL CK+ G ++ +GVVSWG+GCA+ N+PG+YTRV+YY WI+
Sbjct: 185 SQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIH 238
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRI 133
IVGG P +PWQV ++VR H CGG++I +LTAAHC+ K + LR+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWM--HFCGGSLIHPQWVLTAAHCVGPDVKDLATLRV 58
Query: 134 IVGKHNLNGVDKFEKTFKV 152
+ + +L D+ ++
Sbjct: 59 QLREQHLYYQDQLLPVSRI 77
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 122/247 (49%), Gaps = 21/247 (8%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHC------LQGISKSKLR 193
+ G D E + ++ + + GQG H CG ++IS +++AAHC + ++
Sbjct: 2 VGGTDADEGEWPWQVSLHA-LGQG-HICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWT 59
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP 253
+G H+ + + K ++ H F + T DIA++++ E++ V+PIC+P
Sbjct: 60 AFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLP 119
Query: 254 DRDN---AAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNI 310
D + A + W VTGWG + L+ ++VI+Q TC + Q I
Sbjct: 120 DASHVFPAGKAIW--VTGWGHTQYGGTGAL--ILQKGEIRVINQTTCENLL-----PQQI 170
Query: 311 LDSMLCAGYLNXXXXXXXXXXXXPLA-CKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSY 369
M+C G+L+ PL+ + GR +GVVSWGDGCA++NKPGVYTR+
Sbjct: 171 TPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPL 230
Query: 370 YTKWIND 376
+ WI +
Sbjct: 231 FRDWIKE 237
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S+ + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSAIITSN--------MFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M C GYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCVGYLEGGKDACQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG+GCA+KNKPG YT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDACQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPG YT++ Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGFYTKLCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9P|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
Length = 245
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 15/234 (6%)
Query: 149 TFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVGKHNLNGVDK 206
++V ++VR H CGG++I +LTAAHC+ K + LR+ + + +L D+
Sbjct: 13 PWQVSLRVRDRYWM--HFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYYQDQ 70
Query: 207 FEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CV 265
V + ++H +F T + DIA++++ + + V + +P C
Sbjct: 71 L---LPVSRIIVHPQFYIIQTGA-DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCW 126
Query: 266 VTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSS----AVYGNSNQNILDSMLCAGYLN 321
VTGWG + + L+ V +++ + C + A G+ + I D MLCAG N
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--N 184
Query: 322 XXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL CK+ G ++ +GVVSWG+GCA+ N+PG+YTRV+YY WI+
Sbjct: 185 SQRDSCKGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIH 238
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRI 133
IVGG P +PWQV ++VR H CGG++I +LTAAHC+ K + LR+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWM--HFCGGSLIHPQWVLTAAHCVGPDVKDLATLRV 58
Query: 134 IVGKHNLNGVDKFEKTFKV 152
+ + +L D+ ++
Sbjct: 59 QLREQHLYYQDQLLPVSRI 77
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 16/225 (7%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+D +++AAHC KS++++ +G+HN+N ++ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINVLEGNEQFVNA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
K + H F ++ T +NDI ++K+ ++ N V + +P A A C+++GWG
Sbjct: 68 AKIIKHPNFDRK-TLNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTL 125
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +++ + L+ ++ Q C +S I D+M+C G+L
Sbjct: 126 SSGVNE-PDLLQCLDAPLLPQADCEASYP-----GKITDNMVCVGFLEGGKGSCQGDSGG 179
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GCA + P VYT+V Y WI D I
Sbjct: 180 PVVCN--GE--LQGIVSWGYGCALPDNPDVYTKVCNYVDWIQDTI 220
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV S G H CGG++I+D +++AAHC KS++++ +
Sbjct: 1 IVGGYTCQENSVPYQV------SLNSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHNLN---GVDKFEKTFKV 152
G+HN+N G ++F K+
Sbjct: 51 GEHNINVLEGNEQFVNAAKI 70
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 21/247 (8%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHC------LQGISKSKLR 193
+ G D E + ++ + + GQG H CG ++IS +++AAHC + ++
Sbjct: 2 VGGTDADEGEWPWQVSLHA-LGQG-HICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWT 59
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP 253
+G H+ + + K ++ H F + T DIA++++ E++ V+PIC+P
Sbjct: 60 AFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLP 119
Query: 254 DRDN---AAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNI 310
D + A + W VTGWG + L+ ++VI Q TC + Q I
Sbjct: 120 DASHVFPAGKAIW--VTGWGHTQYGGTGAL--ILQKGEIRVIQQTTCENLL-----PQQI 170
Query: 311 LDSMLCAGYLNXXXXXXXXXXXXPLA-CKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSY 369
M+C G+L+ PL+ + GR +GVVSWGDGCA++NKPGVYTR+
Sbjct: 171 TPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPL 230
Query: 370 YTKWIND 376
+ WI +
Sbjct: 231 FRDWIKE 237
>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl
Dipeptide Anilide Inhibitor With Elastase
pdb|4EST|E Chain E, Crystal Structure Of The Covalent Complex Formed By A
Peptidyl Alpha, Alpha-Difluoro-Beta-Keto Amide With
Porcine Pancreatic Elastase At 1.78-Angstroms Resolution
pdb|5EST|E Chain E, Crystallographic Analysis Of The Inhibition Of Porcine
Pancreatic Elastase By A Peptidyl Boronic Acid:
Structure Of A Reaction Intermediate
pdb|7EST|E Chain E, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|8EST|E Chain E, Reaction Of Porcine Pancreatic Elastase With 7-substituted
3-alkoxy-4-chloroisocoumarins: Design Of Potent
Inhibitors Using The Crystal Structure Of The Complex
Formed With 4- Chloro-3-ethoxy-7-guanidino-isocoumarin
pdb|1ELA|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELC|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELB|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELD|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1ELE|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1NES|E Chain E, Structure Of The Product Complex Of Acetyl-ala-pro-ala
With Porcine Pancreatic Elastase At 1.65 Angstroms
Resolution
pdb|1BMA|A Chain A, Benzyl Methyl Aminimide Inhibitor Complexed To Porcine
Pancreatic Elastase
pdb|1FLE|E Chain E, Crystal Structure Of Elafin Complexed With Porcine
Pancreatic Elastase
pdb|1B0E|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With Mdl
101,146
pdb|1QGF|A Chain A, Porcine Pancreatic Elastase Complexed With (3r, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One
pdb|1QIX|B Chain B, Porcine Pancreatic Elastase Complexed With Human
Beta-casomorphin-7
pdb|1QR3|E Chain E, Structure Of Porcine Pancreatic Elastase In Complex With
Fr901277, A Novel Macrocyclic Inhibitor Of Elastases At
1.6 Angstrom Resolution
pdb|1E34|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2- One Soaked In Ph 9 Buffer For One Minute
pdb|1E35|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One Soaked In Ph 9 Buffer For Two
Minutes
pdb|1E36|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One
pdb|1E37|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 1 Minute
pdb|1E38|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 2 Minutes
pdb|1HAZ|B Chain B, Snapshots Of Serine Protease Catalysis: (c) Acyl-enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-casomorphin-7 Jumped To Ph 9 For 1 Minute
pdb|1H9L|B Chain B, Porcine Pancreatic Elastase Complexed With
Acetyl-Val-Glu-Pro-Ile-Cooh
pdb|1OKX|A Chain A, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|1OKX|B Chain B, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|2FO9|A Chain A, Structure Of Porcine Pancreatic Elastase In 95% Acetone
pdb|2FOA|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010 %
BENZENE
pdb|2FOB|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010
CYCLOHEXANE
pdb|2FOC|A Chain A, Structure Of Porcine Pancreatic Elastase In 55%
Dimethylformamide
pdb|2FOD|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Ethanol
pdb|2FOE|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Hexane
pdb|2FOF|A Chain A, Structure Of Porcine Pancreatic Elastase In 80%
Isopropanol
pdb|2FOG|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2FOH|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2BD4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin- 7 And Lys-Ser At Ph 5.0
pdb|2BD5|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Lys- Ser At Ph 5 And Immersed In
Ph 9 Buffer For 30 Seconds
pdb|2BD9|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 28 Seconds (2nd Ph Jump)
pdb|2BDC|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile At
Ph 5.0
pdb|2H1U|A Chain A, Porcine Pancreatic Elastase Complexed With Metpheleuglu At
Ph 5.0
pdb|1BTU|A Chain A, Porcine Pancreatic Elastase Complexed With (3s, 4r)-1-
Toluenesulphonyl-3-Ethyl-Azetidin-2-One-4-Carboxylic
Acid
pdb|1EAS|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 3.
Design, Synthesis, X-Ray Crystallographic Analysis, And
Structure-Activity Relationships For A Series Of Orally
Active 3-Amino-6-Phenylpyridin- 2-One Trifluoromethyl
Ketones
pdb|1EAT|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 5.
Design, Synthesis, And X-Ray Crystallography Of A Series
Of Orally Active 5- Amino-Pyrimidin-6-One-Containing
Trifluoromethylketones
pdb|1EAU|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 6.
Design Of A Potent, Intratracheally Active,
Pyridone-Based Trifluoromethyl Ketone
pdb|1ELF|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ELG|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ESA|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|1EST|A Chain A, The Atomic Structure Of Crystalline Porcine Pancreatic
Elastase At 2.5 Angstroms Resolution. Comparisons With
The Structure Of Alpha- Chymotrypsin
pdb|1INC|A Chain A, Crystal Structures Of The Complex Of Porcine Pancreatic
Elastase With Two Valine-Derived Benzoxazinone
Inhibitors
pdb|1JIM|A Chain A, Stereospecific Reaction Of 3-Methoxy-4-Chloro-7-
Aminoisocoumarin With Crystalline Porcine Pancreatic
Elastase
pdb|1LVY|A Chain A, Porcine Elastase
pdb|3EST|A Chain A, Structure Of Native Porcine Pancreatic Elastase At 1.65
Angstroms Resolution
pdb|6EST|A Chain A, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|9EST|A Chain A, Structural Study Of Porcine Pancreatic Elastase Complexed
With 7- Amino-3-(2-Bromoethoxy)-4-Chloroisocoumarin As A
Nonreactivatable Doubly Covalent Enzyme-Inhibitor
Complex
pdb|1GVK|B Chain B, Porcine Pancreatic Elastase Acyl Enzyme At 0.95 A
Resolution
pdb|3E3T|A Chain A, Structure Of Porcine Pancreatic Elastase With The Magic
Triangle I3c
pdb|3MNB|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. First Stage Of
Radiation Damage
pdb|3MNC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Second Stage Of
Radiation Damage
pdb|3MNS|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Third Stage Of
Radiation Damage
pdb|3MNX|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fourth Stage Of
Radiation Damage
pdb|3MO3|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fifth Stage Of
Radiation Damage
pdb|3MO6|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Sixth Stage Of
Radiation Damage
pdb|3MO9|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Seventh Stage Of
Radiation Damage
pdb|3MOC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Eighth Stage Of
Radiation Damage
pdb|3MTY|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. First Step Of Radiation
Damage
pdb|3MU0|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU1|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3MU4|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. First Step Of Radiation
Damage
pdb|3MU5|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU8|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3ODD|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Second Step Of Radiation
Damage
pdb|3ODF|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Second Step Of Radiation
Damage
pdb|2BB4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Asp- Phe At Ph 5.0
pdb|2BD2|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0
pdb|2BD3|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Lys- Ala-nh2 At Ph 5.0
pdb|2BD7|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
pdb|2BD8|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 30 Seconds
pdb|2BDA|A Chain A, Porcine Pancreatic Elastase Complexed With N-Acetyl-Npi
And Ala-Ala At Ph 5.0
pdb|2BDB|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile And
Ala-ala At Ph 5.0
pdb|1ESB|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|4GVU|A Chain A, Lyngbyastatin 7-porcine Pancreatic Elastase Co-crystal
Structure
Length = 240
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 13/232 (5%)
Query: 151 KVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT 210
++ +Q RS + H CGG +I ++TAAHC+ + R++VG+HNLN + E+
Sbjct: 15 QISLQYRSGSSWA-HTCGGTLIRQNWVMTAAHCVD--RELTFRVVVGEHNLNQNNGTEQY 71
Query: 211 FKVEKAVLHHRFRKEGTHSN-DIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTG 268
V+K V+H + + + DIA++++ ++ N YVQ +P A++ C +TG
Sbjct: 72 VGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITG 131
Query: 269 WGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
WG ++ TL+ A + +D C SS+ +G++ +N SM+CAG +
Sbjct: 132 WGLTRTNG--QLAQTLQQAYLPTVDYAICSSSSYWGSTVKN---SMVCAGG-DGVRSGCQ 185
Query: 329 XXXXXPLACKIGGRFVLSGVVSWGD--GCAKKNKPGVYTRVSYYTKWINDRI 378
PL C + G++ + GV S+ GC KP V+TRVS Y WIN+ I
Sbjct: 186 GDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+VGGT ++P Q+ +Q RS + H CGG +I ++TAAHC+ + R++V
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWA-HTCGGTLIRQNWVMTAAHCVD--RELTFRVVV 57
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+HNLN + E+ V+
Sbjct: 58 GEHNLNQNNGTEQYVGVQ 75
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG+GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 120/226 (53%), Gaps = 17/226 (7%)
Query: 161 GQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
G+ + CGG+I+++ I+TAAHC++ + K+ ++ G+HN+ + E+ V + + HH
Sbjct: 20 GKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHNIEETEHTEQKRNVIRIIPHH 77
Query: 221 RFRKE-GTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-----AASDWCVVTGWGAQNA 274
F T+++DIA++++ + N YV PICI D++ S + V+GWG
Sbjct: 78 NFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGY--VSGWGRVFH 135
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
+ + L+ V ++D+ TC S + I ++M CAG+ P
Sbjct: 136 KGRSAL--VLQYLRVPLVDRATCLRSTKF-----TITNNMFCAGFHEGGRDSCQGDSGGP 188
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
++ G L+G++SWG+ CA K K G+YT+VS Y WI ++ ++
Sbjct: 189 HVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL 234
>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 At Ph 5
pdb|1HAY|B Chain B, Snapshots Of Serine Protease Catalysis: (B) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 10 Seconds
pdb|1HB0|B Chain B, Snapshots Of Serine Protease Catalysis: (D) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 2 Minutes
Length = 240
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 21/236 (8%)
Query: 151 KVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT 210
++ +Q RS + H CGG +I ++TAAHC+ + R++VG+HNLN + E+
Sbjct: 15 QISLQYRSGSSWA-HTCGGTLIRQNWVMTAAHCVD--RELTFRVVVGEHNLNQNNGTEQY 71
Query: 211 FKVEKAVLHHRFRKEGTHSN-DIAVVKIRGNIEFNQYVQPICIPD-----RDNAAASDWC 264
V+K V+H + + + DIA++++ ++ N YVQ +P R+N+ C
Sbjct: 72 VGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILRNNSP----C 127
Query: 265 VVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXX 324
+TGWG ++ TL+ A + +D C SS+ +G++ +N SM+CAG +
Sbjct: 128 YITGWGLTRTNG--QLAQTLQQAYLPTVDYAICSSSSYWGSTVKN---SMVCAGG-DGVR 181
Query: 325 XXXXXXXXXPLACKIGGRFVLSGVVSWGD--GCAKKNKPGVYTRVSYYTKWINDRI 378
PL C + G++ + GV S+ GC KP V+TRVS Y WIN+ I
Sbjct: 182 SGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+VGGT ++P Q+ +Q RS + H CGG +I ++TAAHC+ + R++V
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWA-HTCGGTLIRQNWVMTAAHCVD--RELTFRVVV 57
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+HNLN + E+ V+
Sbjct: 58 GEHNLNQNNGTEQYVGVQ 75
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 21/228 (9%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEF-NQYVQPICIPDRDNAAASDWCVVTGWG-- 270
K+++H + T +NDI ++K++ + V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLXDSRVASISLP-TSCASAGTQCLISGWGNT 125
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXX 330
+ S D+ L+A ++ ++C+S+ I +M CAGYL
Sbjct: 126 KSSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGYLEGGKDSCQGD 177
Query: 331 XXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 SGGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 221
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSYIITSN--------MFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSRIITSN--------MFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1LTO|A Chain A, Human Alpha1-Tryptase
pdb|1LTO|B Chain B, Human Alpha1-Tryptase
pdb|1LTO|C Chain C, Human Alpha1-Tryptase
pdb|1LTO|D Chain D, Human Alpha1-Tryptase
Length = 245
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 15/234 (6%)
Query: 149 TFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVGKHNLNGVDK 206
++V ++VR H CGG++I +LTAAHCL K + LR+ + + +L D+
Sbjct: 13 PWQVSLRVRDRYWM--HFCGGSLIHPQWVLTAAHCLGPDVKDLATLRVQLREQHLYYQDQ 70
Query: 207 FEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CV 265
V + ++H +F T + DIA++++ + + V + +P C
Sbjct: 71 L---LPVSRIIVHPQFYIIQTGA-DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCW 126
Query: 266 VTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSS----AVYGNSNQNILDSMLCAGYLN 321
VTGWG + + L+ V +++ + C + A G+ + I D MLCAG N
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--N 184
Query: 322 XXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL CK+ G ++ +GVVSW +GCA+ N+PG+YTRV+YY WI+
Sbjct: 185 SQRDSCKGDSGGPLVCKVNGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWIH 238
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRI 133
IVGG P +PWQV ++VR H CGG++I +LTAAHCL K + LR+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWM--HFCGGSLIHPQWVLTAAHCLGPDVKDLATLRV 58
Query: 134 IVGKHNLNGVDKFEKTFKV 152
+ + +L D+ ++
Sbjct: 59 QLREQHLYYQDQLLPVSRI 77
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 103/223 (46%), Gaps = 15/223 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKV 213
QV T G+H CGG +IS +LTAAHCL+ + S ++I+G H ++ + +V
Sbjct: 31 QVSLRTRFGQHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEV 90
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS-DWCVVTGWGAQ 272
+ L DIA++K+ V P C+P + A C +TGWG
Sbjct: 91 SRLFLE-------PTRKDIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFITGWGET 143
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+ L+ A + VI+ C Y N + + LCAG+L
Sbjct: 144 QGTFG---AGLLKEAQLPVIENKVCNR---YEFLNGRVQSTELCAGHLAGGTDSCQGDSG 197
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL C +++L GV SWG GCA+ NKPGVY RVS + WI
Sbjct: 198 GPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 240
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 59 CGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILT 118
CG V EP++ ++VGG ++PWQV ++ R G+H CGG +IS +LT
Sbjct: 3 CGKPQV--EPKKCPG-RVVGGCVAHPHSWPWQVSLRTRF----GQHFCGGTLISPEWVLT 55
Query: 119 AAHCLQGISK-SKLRIIVGKHN 139
AAHCL+ + S ++I+G H
Sbjct: 56 AAHCLEKSPRPSSYKVILGAHQ 77
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 11/242 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKH 199
+ G++ F ++ VR + H CGG+II+D ++ AAHC+QG + + + ++VG+H
Sbjct: 2 VGGIEARPYEFPWQVSVRRKSSD-SHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEH 60
Query: 200 NLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA 259
+ + +T V+ ++ + T ND++V+K I F+ V PIC PD N
Sbjct: 61 DSSAASTVRQTHDVDSIFVNENY-DPATLENDVSVIKTAVAITFDINVGPICAPDPANDY 119
Query: 260 ASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGY 319
+GWG N+ + LR T+ + C AVY ++ I D M+CA
Sbjct: 120 VYRKSQCSGWGTINSGGV-CCPAVLRYVTLNITTNAFC--DAVY--TSDTIYDDMICATD 174
Query: 320 LNXXXXXXXXXXXX--PLACKIG-GRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
PL+ K G G F L G+VSWG GCA PGVY+RV ++ WI D
Sbjct: 175 NTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPGVYSRVGFHAGWITD 233
Query: 377 RI 378
I
Sbjct: 234 TI 235
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 76 IVGGTST-PYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 134
IVGG PY +PWQV ++ +SS H CGG+II+D ++ AAHC+QG + + + ++
Sbjct: 1 IVGGIEARPY-EFPWQVSVRRKSSD---SHFCGGSIINDRWVVCAAHCMQGEAPALVSLV 56
Query: 135 VGKHNLNGVDKFEKTFKVE 153
VG+H+ + +T V+
Sbjct: 57 VGEHDSSAASTVRQTHDVD 75
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 120/226 (53%), Gaps = 17/226 (7%)
Query: 161 GQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
G+ + CGG+I+++ I+TAAHC++ + K+ ++ G+HN+ + E+ V + + HH
Sbjct: 20 GKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHNIEETEHTEQKRNVIRIIPHH 77
Query: 221 RFRKE-GTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-----AASDWCVVTGWGAQNA 274
F T+++DIA++++ + N YV PICI D++ S + V+GWG
Sbjct: 78 NFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGY--VSGWGRVFH 135
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
+ + L+ V ++D+ TC S + I ++M CAG+ P
Sbjct: 136 KGRAAL--VLQYLRVPLVDRATCLRSTKF-----TITNNMFCAGFHEGGRDSCQGDSGGP 188
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
++ G L+G++SWG+ CA K K G+YT+VS Y WI ++ ++
Sbjct: 189 HVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL 234
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M CAGYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSWIITSN--------MFCAGYLEGGKDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 37/243 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG-- 142
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
N + + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 143 NLKETWGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD---- 193
Query: 333 XPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
AC+ GG FV+ G+VSWG+GC + K G YT V KWI I
Sbjct: 194 ---ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ 250
Query: 381 LQE 383
E
Sbjct: 251 FGE 253
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 40/243 (16%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KGQ-----PSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD---- 190
Query: 333 XPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
AC+ GG FV+ G+VSWG+GC + K G YT V KWI I
Sbjct: 191 ---ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ 247
Query: 381 LQE 383
E
Sbjct: 248 FGE 250
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
S G H CGG+++++ +++AAHC KS++ + +G+HN+ + E+ + +
Sbjct: 37 SLNSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNIKVTEGSEQFISSSRVIR 92
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H + NDI ++K+ N YVQP+ +P A A C V+GWG + + D
Sbjct: 93 HPNYSSYNI-DNDIMLIKLSKPATLNTYVQPVALP-TSCAPAGTMCTVSGWGNTMSSTAD 150
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
SN L+ + ++ + C +S I ++M CAGYL P+ C
Sbjct: 151 --SNKLQCLNIPILSYSDCNNSY-----PGMITNAMFCAGYLEGGKDSCQGDSGGPVVCN 203
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G L GVVSWG GCA+ PGVY +V + W+ +
Sbjct: 204 --GE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 239
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 17/226 (7%)
Query: 161 GQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
G+ + CGG+I+++ I+TAAHC++ + K+ ++ G+HN+ + E+ V + + HH
Sbjct: 20 GKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHNIEETEHTEQKRNVIRIIPHH 77
Query: 221 RFRKE-GTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-----AASDWCVVTGWGAQNA 274
+ T+++DIA++++ + N YV PICI D++ S + V+GWG
Sbjct: 78 NYNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGY--VSGWGRVFH 135
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
+ + L+ V ++D+ TC S + I ++M CAG+ P
Sbjct: 136 KGRSAL--VLQYLRVPLVDRATCLRSTKF-----TITNNMFCAGFHEGGRDSCQGDSGGP 188
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
++ G L+G++SWG+ CA K K G+YT+VS Y WI ++ ++
Sbjct: 189 HVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL 234
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+VGG G +PWQV + G+ + CGG+I+++ I+TAAHC++ + K+ ++
Sbjct: 1 VVGGEDAKPGQFPWQVVLN-----GKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVA 53
Query: 136 GKHNLNGVDKFEK 148
G+HN+ + E+
Sbjct: 54 GEHNIEETEHTEQ 66
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
S G H CGG+++++ +++AAHC KS++ + +G+HN+ + E+ + +
Sbjct: 17 SLNSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNIKVTEGSEQFISSSRVIR 72
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H + NDI ++K+ N YVQP+ +P A A C V+GWG + + D
Sbjct: 73 HPNYSSYNI-DNDIMLIKLSKPATLNTYVQPVALP-TSCAPAGTMCTVSGWGNTMSSTAD 130
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
SN L+ + ++ + C +S I ++M CAGYL P+ C
Sbjct: 131 --SNKLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCN 183
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G L GVVSWG GCA+ PGVY +V + W+ +
Sbjct: 184 --GE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 102/223 (45%), Gaps = 15/223 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKV 213
QV T G H CGG +IS +LTAAHCL+ + S ++I+G H ++ + +V
Sbjct: 33 QVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEV 92
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS-DWCVVTGWGAQ 272
+ L DIA++K+ V P C+P + A C +TGWG
Sbjct: 93 SRLFLE-------PTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET 145
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+ L+ A + VI+ C Y N + + LCAG+L
Sbjct: 146 QGTFG---AGLLKEAQLPVIENKVCNR---YEFLNGRVQSTELCAGHLAGGTDSCQGDAG 199
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL C +++L GV SWG GCA+ NKPGVY RVS + WI
Sbjct: 200 GPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 242
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 56 AMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTV 115
+ CG V EP++ ++VGG ++PWQV ++ R G H CGG +IS
Sbjct: 2 SFDCGKPQV--EPKKCPG-RVVGGCVAHPHSWPWQVSLRTRF----GMHFCGGTLISPEW 54
Query: 116 ILTAAHCLQGISK-SKLRIIVGKHN 139
+LTAAHCL+ + S ++I+G H
Sbjct: 55 VLTAAHCLEKSPRPSSYKVILGAHQ 79
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
S G H CGG+++++ +++AAHC KS++ + +G+HN+ + E+ + +
Sbjct: 17 SLNSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNIKVTEGSEQFISSSRVIR 72
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H + NDI ++K+ N YVQP+ +P A A C V+GWG + + D
Sbjct: 73 HPNYSSYNI-DNDIMLIKLSKPATLNTYVQPVALP-TSCAPAGTMCTVSGWGNTMSSTAD 130
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
SN L+ + ++ + C +S I ++M CAGYL P+ C
Sbjct: 131 --SNKLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCN 183
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G L GVVSWG GCA+ PGVY +V + W+ +
Sbjct: 184 --GE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 102/223 (45%), Gaps = 15/223 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKV 213
QV T G H CGG +IS +LTAAHCL+ + S ++I+G H ++ + +V
Sbjct: 34 QVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEV 93
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS-DWCVVTGWGAQ 272
+ L DIA++K+ V P C+P + A C +TGWG
Sbjct: 94 SRLFLE-------PTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET 146
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+ L+ A + VI+ C Y N + + LCAG+L
Sbjct: 147 QGTFG---AGLLKEAQLPVIENKVCNR---YEFLNGRVQSTELCAGHLAGGTDSCQGDAG 200
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL C +++L GV SWG GCA+ NKPGVY RVS + WI
Sbjct: 201 GPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 243
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 56 AMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTV 115
+ CG V EP++ ++VGG ++PWQV ++ R G H CGG +IS
Sbjct: 3 SFDCGKPQV--EPKKCPG-RVVGGCVAHPHSWPWQVSLRTRF----GMHFCGGTLISPEW 55
Query: 116 ILTAAHCLQGISK-SKLRIIVGKHN 139
+LTAAHCL+ + S ++I+G H
Sbjct: 56 VLTAAHCLEKSPRPSSYKVILGAHQ 80
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + E T++NDI ++K++ V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSE-TYNNDIMLIKLKSAASLXSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A + + S + N M C GYL
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCKSASSFIITSN--------MFCVGYLEGGKDACQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG+GCA+KNKPG YT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC KS +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCY----KSGIQVRL 50
Query: 136 GKHNLNGVDKFEK 148
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQ 63
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
S G H CGG+++++ +++AAHC KS++ + +G+HN+ + E+ + +
Sbjct: 32 SLNSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNIKVTEGSEQFISSSRVIR 87
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H + NDI ++K+ N YVQP+ +P A A C V+GWG + + D
Sbjct: 88 HPNYSSYNI-DNDIMLIKLSKPATLNTYVQPVALP-TSCAPAGTMCTVSGWGNTMSSTAD 145
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
SN L+ + ++ + C +S I ++M CAGYL P+ C
Sbjct: 146 --SNKLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCN 198
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G L GVVSWG GCA+ PGVY +V + W+ +
Sbjct: 199 --GE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 234
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 102/223 (45%), Gaps = 15/223 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKV 213
QV T G H CGG +IS +LTAAHCL+ + S ++I+G H ++ + +V
Sbjct: 32 QVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEV 91
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS-DWCVVTGWGAQ 272
+ L DIA++K+ V P C+P + A C +TGWG
Sbjct: 92 SRLFLE-------PTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET 144
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+ L+ A + VI+ C Y N + + LCAG+L
Sbjct: 145 QGTFG---AGLLKEAQLPVIENKVCNR---YEFLNGRVQSTELCAGHLAGGTDSCQGDAG 198
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL C +++L GV SWG GCA+ NKPGVY RVS + WI
Sbjct: 199 GPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 241
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 56 AMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTV 115
+ CG V EP++ ++VGG ++PWQV ++ R G H CGG +IS
Sbjct: 1 SFDCGKPQV--EPKKCPG-RVVGGCVAHPHSWPWQVSLRTRF----GMHFCGGTLISPEW 53
Query: 116 ILTAAHCLQGISK-SKLRIIVGKHN 139
+LTAAHCL+ + S ++I+G H
Sbjct: 54 VLTAAHCLEKSPRPSSYKVILGAHQ 78
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 102/223 (45%), Gaps = 15/223 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKV 213
QV T G H CGG +IS +LTAAHCL+ + S ++I+G H ++ + +V
Sbjct: 32 QVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEV 91
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS-DWCVVTGWGAQ 272
+ L DIA++K+ V P C+P + A C +TGWG
Sbjct: 92 SRLFLE-------PTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET 144
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+ L+ A + VI+ C Y N + + LCAG+L
Sbjct: 145 QGTFG---AGLLKEAQLPVIENKVCNR---YEFLNGRVQSTELCAGHLAGGTDSCQGDSG 198
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL C +++L GV SWG GCA+ NKPGVY RVS + WI
Sbjct: 199 GPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 241
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 56 AMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTV 115
+ CG V EP++ ++VGG ++PWQV ++ R G H CGG +IS
Sbjct: 1 SFDCGKPQV--EPKKCPG-RVVGGCVAHPHSWPWQVSLRTRF----GMHFCGGTLISPEW 53
Query: 116 ILTAAHCLQGISK-SKLRIIVGKHN 139
+LTAAHCL+ + S ++I+G H
Sbjct: 54 VLTAAHCLEKSPRPSSYKVILGAHQ 78
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 102/223 (45%), Gaps = 15/223 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKV 213
QV T G H CGG +IS +LTAAHCL+ + S ++I+G H ++ + +V
Sbjct: 35 QVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEV 94
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS-DWCVVTGWGAQ 272
+ L DIA++K+ V P C+P + A C +TGWG
Sbjct: 95 SRLFLE-------PTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET 147
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+ L+ A + VI+ C Y N + + LCAG+L
Sbjct: 148 QGTFG---AGLLKEAQLPVIENKVCNR---YEFLNGRVQSTELCAGHLAGGTDSCQGDSG 201
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL C +++L GV SWG GCA+ NKPGVY RVS + WI
Sbjct: 202 GPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 244
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 56 AMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTV 115
+ CG V EP++ ++VGG ++PWQV ++ R G H CGG +IS
Sbjct: 4 SFDCGKPQV--EPKKCPG-RVVGGCVAHPHSWPWQVSLRTRF----GMHFCGGTLISPEW 56
Query: 116 ILTAAHCLQGISK-SKLRIIVGKHN 139
+LTAAHCL+ + S ++I+G H
Sbjct: 57 VLTAAHCLEKSPRPSSYKVILGAHQ 81
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 31/243 (12%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+I N ++ + ++V++ ++ I D+M CAGY
Sbjct: 145 RETWTTNI-NEIQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGD---- 199
Query: 333 XPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
AC+ GG FV+ G+VSWG+GC + K G YT V KWI I
Sbjct: 200 ---ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ 256
Query: 381 LQE 383
E
Sbjct: 257 FGE 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 74 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 133
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 134 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 193
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 194 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 248
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 249 -------ACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 301
Query: 377 RIQMLQE 383
I E
Sbjct: 302 VIDQFGE 308
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 49 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 105
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 106 NDLLVRIGKHSRTRYERNIEKISMLEKIY 134
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 102/223 (45%), Gaps = 15/223 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKV 213
QV T G H CGG +IS +LTAAHCL+ + S ++I+G H ++ + +V
Sbjct: 35 QVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEV 94
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS-DWCVVTGWGAQ 272
+ L DIA++K+ V P C+P + A C +TGWG
Sbjct: 95 SRLFLE-------PTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET 147
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+ L+ A + VI+ C Y N + + LCAG+L
Sbjct: 148 QGTFG---AGLLKEAQLPVIENKVCNR---YEFLNGRVQSTELCAGHLAGGTDSCQGDAG 201
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL C +++L GV SWG GCA+ NKPGVY RVS + WI
Sbjct: 202 GPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 244
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 56 AMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTV 115
+ CG V EP++ ++VGG ++PWQV ++ R G H CGG +IS
Sbjct: 4 SFDCGKPQV--EPKKCPG-RVVGGCVAHPHSWPWQVSLRTRF----GMHFCGGTLISPEW 56
Query: 116 ILTAAHCLQGISK-SKLRIIVGKHN 139
+LTAAHCL+ + S ++I+G H
Sbjct: 57 VLTAAHCLEKSPRPSSYKVILGAHQ 81
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGPL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 11/212 (5%)
Query: 167 CGGAIISDTVILTAAHCLQG--ISKSKLRIIVGKHNLNGVDKFE-KTFKVEKAVLHHRFR 223
CG +++S +++AAHC+ G + SK + ++G H + + + +T +++ V++ +
Sbjct: 26 CGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVINPHYN 85
Query: 224 KEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQNAESIDDISN 282
K +NDIA++ + + + Y+QPIC+P+ + C + GWGA + ++
Sbjct: 86 KR-RKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQG--STAD 142
Query: 283 TLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGR 342
L+ A V ++ C+ NI ++M+CAGY PL C+ R
Sbjct: 143 VLQEADVPLLSNEKCQQQM----PEYNITENMVCAGYEAGGVDSCQGDSGGPLMCQENNR 198
Query: 343 FVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
++L+GV S+G CA N+PGVY RV +T+WI
Sbjct: 199 WLLAGVTSFGYQCALPNRPGVYARVPRFTEWI 230
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG--ISKSKLRI 133
IVGG+ + GA+PW V + + CG +++S +++AAHC+ G + SK +
Sbjct: 1 IVGGSDSREGAWPWVVALYFDD-----QQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKA 55
Query: 134 IVGKH 138
++G H
Sbjct: 56 VLGLH 60
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 56 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 115
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 116 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 175
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 176 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 230
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 231 -------ACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 283
Query: 377 RIQMLQE 383
I E
Sbjct: 284 VIDQFGE 290
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 31 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 87
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 88 NDLLVRIGKHSRTRYERNIEKISMLEKIY 116
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACKI--GGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEADSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 25/240 (10%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYL---NXXXX 325
++ + L+ + ++++ C+ S + I D+M CAG+
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGFKVNDTKRGD 199
Query: 326 XXXXXXXXPLACK--IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQE 383
P K R+ G+VSWG+GC +K K G YT V KWI I E
Sbjct: 200 ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKKWIQKVIDQFGE 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KEKGQPSV---LQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD---- 192
Query: 333 XPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
AC+ GG FV+ G+VSWG+GC + K G YT V KWI I
Sbjct: 193 ---ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ 249
Query: 381 LQE 383
E
Sbjct: 250 FGE 252
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 26 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 85
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 86 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 145
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 146 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 200
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 201 -------ACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 253
Query: 377 RIQMLQE 383
I E
Sbjct: 254 VIDQFGE 260
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 1 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 57
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 58 NDLLVRIGKHSRTRYERNIEKISMLEKIY 86
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACKI--GGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEPDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 61 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 120
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 121 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 180
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 181 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 235
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 236 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 288
Query: 377 RIQMLQE 383
I E
Sbjct: 289 VIDQFGE 295
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 36 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 92
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 93 NDLLVRIGKHSRTRYERNIEKISMLEKIY 121
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
S G H CGG+++++ +++AAHC KS++ + +G+HN+ + E+ + +
Sbjct: 17 SLNSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNIKVTEGSEQFISSSRVIR 72
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H + NDI ++K+ + N YVQP+ +P A A C V+GWG + + D
Sbjct: 73 HPNYSSYNI-DNDIMLIKLSKSATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSSTAD 130
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
N L+ + ++ + C +S I ++M CAGYL P+ C
Sbjct: 131 K--NKLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCN 183
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G L GVVSWG GCA+ PGVY +V + W+ +
Sbjct: 184 --GE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 61 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 120
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 121 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 180
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 181 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 235
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 236 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 288
Query: 377 RIQMLQE 383
I E
Sbjct: 289 VIDQFGE 295
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 36 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 92
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 93 NDLLVRIGKHSRTRYERNIEKISMLEKIY 121
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTTNVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACQGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKIGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 38/241 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTAYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG-- 142
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
N + S L+ + ++++ C+ S + I D+M CAGY
Sbjct: 143 NLKETGQPS-VLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD---- 192
Query: 333 XPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
AC+ GG FV+ G+VSWG+GC + K G YT V KWI I
Sbjct: 193 ---ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ 249
Query: 381 L 381
Sbjct: 250 F 250
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTAYERNIEKISMLEKIY 85
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 57 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 116
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 117 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 176
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 177 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 231
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 232 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 284
Query: 377 RIQMLQE 383
I E
Sbjct: 285 VIDQFGE 291
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 32 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 88
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 89 NDLLVRIGKHSRTRYERNIEKISMLEKIY 117
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 55 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 114
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 115 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 174
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 175 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 229
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 230 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282
Query: 377 RIQMLQE 383
I E
Sbjct: 283 VIDQFGE 289
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 86
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 87 NDLLVRIGKHSRTRYERNIEKISMLEKIY 115
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 21/247 (8%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHC------LQGISKSKLR 193
+ G D E + ++ + + GQG H CG ++IS +++AAHC + ++
Sbjct: 2 VGGTDADEGEWPWQVSLHA-LGQG-HICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWT 59
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP 253
+G H+ + + K ++ H F + T DIA++++ E++ V+PI +P
Sbjct: 60 AFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLP 119
Query: 254 DRDN---AAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNI 310
D + A + W VTGWG + L+ ++VI+Q TC + Q I
Sbjct: 120 DASHVFPAGKAIW--VTGWGHTQYGGTGAL--ILQKGEIRVINQTTCENLL-----PQQI 170
Query: 311 LDSMLCAGYLNXXXXXXXXXXXXPLA-CKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSY 369
M+C G+L+ PL+ + GR +GVVSWGDGCA++NKPGVYTR+
Sbjct: 171 TPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPL 230
Query: 370 YTKWIND 376
+ WI +
Sbjct: 231 FRDWIKE 237
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 110/238 (46%), Gaps = 17/238 (7%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGK 198
+ G + ++ ++ +R+ G H CGG +IS +LTAAHCL+ + S ++I+G
Sbjct: 19 VGGCVAYPHSWPWQVSLRTRFGM--HFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 76
Query: 199 HNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA 258
H ++ + +V + L RK DIA++K+ V P C+P +
Sbjct: 77 HQEVNLEPHVQEIEVSRLFLEPT-RK------DIALLKLSSPAVITDKVIPACLPSPNYV 129
Query: 259 AAS-DWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCA 317
A C +TGWG + L A + VI+ C Y N + + LCA
Sbjct: 130 VADRTECFITGWGETQGTFG---AGLLMEAQLPVIENKVCNR---YEFLNGRVQSTELCA 183
Query: 318 GYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
G+L PL C +++L GV SWG GCA+ NKPGVY RVS + WI
Sbjct: 184 GHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 241
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 56 AMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTV 115
+ CG V EP++ + G + P+ ++PWQV ++ R G H CGG +IS
Sbjct: 1 SFDCGKPQV--EPKKCPGAVVGGCVAYPH-SWPWQVSLRTRF----GMHFCGGTLISPEW 53
Query: 116 ILTAAHCLQGISK-SKLRIIVGKHN 139
+LTAAHCL+ + S ++I+G H
Sbjct: 54 VLTAAHCLEKSPRPSSYKVILGAHQ 78
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
S G H CGG+++++ +++AAHC KS++ + +G+HN+ + E+ + +
Sbjct: 17 SLNSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNIKVTEGSEQFISSSRVIR 72
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H + NDI ++K+ N YVQP+ +P A A C V+GWG + + D
Sbjct: 73 HPNYSSYNI-DNDIMLIKLSKPATLNTYVQPVALP-TSCAPAGTMCTVSGWGNTMSSTAD 130
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
S+ L+ + ++ + C S I ++M CAGYL P+ C
Sbjct: 131 --SDKLQCLNIPILSYSDCNDSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCN 183
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G L GVVSWG GCA+ PGVY +V ++ W+ +
Sbjct: 184 --GE--LQGVVSWGYGCAEPGNPGVYAKVCIFSDWLTSTM 219
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 190 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 249
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 250 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 309
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 310 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 364
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 365 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 417
Query: 377 RIQMLQE 383
I E
Sbjct: 418 VIDQFGE 424
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 165 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 221
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 222 NDLLVRIGKHSRTRYERNIEKISMLEKIY 250
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 29/226 (12%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKE- 225
CGG+II++ ++TAAHC++ K+ ++ G++N + E+ V +A+ HH +
Sbjct: 26 CGGSIINEKWVVTAAHCIE--PGVKITVVAGEYNTEETEPTEQRRNVIRAIPHHSYNATV 83
Query: 226 GTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-----AASDWCVVTGWGAQNAESIDDI 280
+S+DIA++++ + N YV PICI D++ S + V+GWG +
Sbjct: 84 NKYSHDIALLELDEPLTLNSYVTPICIADKEYTNIFLKFGSGY--VSGWG--------RV 133
Query: 281 SNTLRAAT------VKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
N R+AT V ++D+ TC S + I +M CAG+ P
Sbjct: 134 FNRGRSATILQYLKVPLVDRATCLRSTKF-----TIYSNMFCAGFHEGGKDSCQGDSGGP 188
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
++ G L+G++SWG+ CA K K G+YT+VS Y WI ++ ++
Sbjct: 189 HVTEVEGTSFLTGIISWGEECAVKGKYGIYTKVSRYVNWIKEKTKL 234
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + G +PWQV + G+ + CGG+II++ ++TAAHC++ K+ ++
Sbjct: 1 IVGGENAKPGQFPWQVLLN-----GKIDAFCGGSIINEKWVVTAAHCIE--PGVKITVVA 53
Query: 136 GKHNLNGVDKFEK 148
G++N + E+
Sbjct: 54 GEYNTEETEPTEQ 66
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 17/220 (7%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
S G H CGG+++++ +++AAHC KS++ + +G+HN+ + E+ + +
Sbjct: 17 SLNSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNIKVTEGSEQFISSSRVIR 72
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H + NDI ++K+ N YVQP+ +P A A C V+GWG + + D
Sbjct: 73 HPNYSSYNI-DNDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSSTAD 130
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
N L+ + ++ + C +S I ++M CAGYL P+ C
Sbjct: 131 K--NKLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCN 183
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G L GVVSWG GCA+ PGVY +V + W+ +
Sbjct: 184 --GE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKFGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 17/226 (7%)
Query: 161 GQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
G+ + CGG+I+++ I+TAAHC++ + K+ ++ G+HN+ + E+ V + + HH
Sbjct: 20 GKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHNIEETEHTEQKRNVIRIIPHH 77
Query: 221 RFRKE-GTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-----AASDWCVVTGWGAQNA 274
+ +++DIA++++ + N YV PICI D++ S + V+GWG
Sbjct: 78 NYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGY--VSGWGRVFH 135
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
+ + L+ V ++D+ TC S + I ++M CAG+ P
Sbjct: 136 KGRSAL--VLQYLRVPLVDRATCLRSTKF-----TIYNNMFCAGFHEGGRDSCQGDSGGP 188
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
++ G L+G++SWG+ CA K K G+YT+VS Y WI ++ ++
Sbjct: 189 HVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL 234
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 17/226 (7%)
Query: 161 GQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
G+ + CGG+I+++ I+TAAHC++ + K+ ++ G+HN+ + E+ V + + HH
Sbjct: 20 GKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHNIEETEHTEQKRNVIRIIPHH 77
Query: 221 RFRKE-GTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-----AASDWCVVTGWGAQNA 274
+ +++DIA++++ + N YV PICI D++ S + V+GWG
Sbjct: 78 NYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGY--VSGWGRVFH 135
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
+ + L+ V ++D+ TC S + I ++M CAG+ P
Sbjct: 136 KGRSAL--VLQYLRVPLVDRATCLRSTKF-----TIYNNMFCAGFHEGGRDSCQGDAGGP 188
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
++ G L+G++SWG+ CA K K G+YT+VS Y WI ++ ++
Sbjct: 189 HVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL 234
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 16/221 (7%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CG +I + +LTAAHC+ KL + +G+++L +K+E +++ +H + K
Sbjct: 27 CGAVLIHPSWVLTAAHCMD--ESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKST 84
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPD-----RDNAAASDWCVVTGWG---AQNAESID 278
T NDIA++ + +Q + PIC+PD R+ A +VTGWG ++ E+
Sbjct: 85 T-DNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKR 143
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
+ + L + V+ N C S V N + ++MLCAG L P+
Sbjct: 144 NRTFVLNFIKIPVVPHNEC--SEVMSNM---VSENMLCAGILGDRQDACEGDSGGPMVAS 198
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
G + L G+VSWG+GC + GVYT+VS Y WI+ I+
Sbjct: 199 FHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR 239
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
++ G T G PWQV + + + CG +I + +LTAAHC+ KL + +
Sbjct: 1 LIDGKMTRRGDSPWQVVLL----DSKKKLACGAVLIHPSWVLTAAHCMD--ESKKLLVRL 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+++L +K+E ++
Sbjct: 55 GEYDLRRWEKWELDLDIK 72
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 116/247 (46%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCRDDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 55 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 114
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 115 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 174
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 175 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 229
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 230 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282
Query: 377 RIQML 381
I
Sbjct: 283 VIDQF 287
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 86
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 87 NDLLVRIGKHSRTRYERNIEKISMLEKIY 115
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 16/221 (7%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CG +I + +LTAAHC+ KL + +G+++L +K+E +++ +H + K
Sbjct: 27 CGAVLIHPSWVLTAAHCMD--ESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKST 84
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPD-----RDNAAASDWCVVTGWG---AQNAESID 278
T NDIA++ + +Q + PIC+PD R+ A +VTGWG ++ E+
Sbjct: 85 T-DNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKR 143
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
+ + L + V+ N C S V N + ++MLCAG L P+
Sbjct: 144 NRTFVLNFIKIPVVPHNEC--SEVMSNM---VSENMLCAGILGDRQDACEGDSGGPMVAS 198
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
G + L G+VSWG+GC + GVYT+VS Y WI+ I+
Sbjct: 199 FHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR 239
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
++ G T G PWQV + + + CG +I + +LTAAHC+ KL + +
Sbjct: 1 LIDGKMTRRGDSPWQVVLL----DSKKKLACGAVLIHPSWVLTAAHCMD--ESKKLLVRL 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+++L +K+E ++
Sbjct: 55 GEYDLRRWEKWELDLDIK 72
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 116/247 (46%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 116/247 (46%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVD-KFEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ + EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYEANIEKISMLEKIY 85
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Query: 165 HQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNL-NGVDK-----FEKTFKVEKAV 217
H CGG +++ +LTAAHC + K + R+I G + + G +K ++ F VE+ +
Sbjct: 30 HTCGGILLNSHWVLTAAHCFKNKKKVTDWRLIFGANEVVWGSNKPVKPPLQERF-VEEII 88
Query: 218 LHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA--ASDWCVVTGWGAQNAE 275
+H ++ G NDIA++KI + ++ P C+P A C VTGWG E
Sbjct: 89 IHEKY-VSGLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVTGWGYLK-E 146
Query: 276 SIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPL 335
S TL+ A V +ID C S+ Y N I + +CAGY PL
Sbjct: 147 KGPRTSPTLQEARVALIDLELCNSTRWY---NGRIRSTNVCAGYPRGKIDTCQGDSGGPL 203
Query: 336 ACKIGGR--FVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI-----QMLQ 382
C+ FV+ G+ SWG GCA+ +PGVYT Y WI +I QM+Q
Sbjct: 204 MCRDRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWIASKIGSNALQMVQ 257
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 55 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 114
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 115 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 174
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 175 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 229
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 230 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282
Query: 377 RIQML 381
I
Sbjct: 283 VIDQF 287
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 86
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 87 NDLLVRIGKHSRTRYERNIEKISMLEKIY 115
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 57 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 116
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 117 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 176
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 177 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 231
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 232 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 284
Query: 377 RIQML 381
I
Sbjct: 285 VIDQF 289
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 32 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 88
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 89 NDLLVRIGKHSRTRYERNIEKISMLEKIY 117
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 20/227 (8%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CA L
Sbjct: 126 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAYGLEGKGDSCQGDS 177
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GC KNKPGVYT+V Y WI I
Sbjct: 178 GGPVVCS--GK--LQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 54 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 113
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 114 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 173
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 174 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 228
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 229 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 281
Query: 377 RIQML 381
I
Sbjct: 282 VIDQF 286
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 29 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 85
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 86 NDLLVRIGKHSRTRYERNIEKISMLEKIY 114
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 17/220 (7%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
S G H CGG+++++ +++AAHC K+++ + +G+HN+ + E+ + +
Sbjct: 17 SLNSGYHFCGGSLVNENWVVSAAHCY----KTRVEVRLGEHNIKVTEGSEQFISSSRVIR 72
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H + NDI ++K+ N YVQP+ +P A A C V+GWG + + D
Sbjct: 73 HPNYSSYNI-DNDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSSTAD 130
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
N L+ + ++ + C +S I ++M CAGYL P+ C
Sbjct: 131 K--NKLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCN 183
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G L GVVSWG GCA+ PGVY +V + W+ +
Sbjct: 184 --GE--LQGVVSWGYGCAEPGNPGVYAKVCIFNNWLTSTM 219
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQML 381
I
Sbjct: 253 VIDQF 257
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQML 381
I
Sbjct: 253 VIDQF 257
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 38/241 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG-- 142
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
N + S L+ + ++++ C+ S + I D+M CAGY
Sbjct: 143 NLKETGQPS-VLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD---- 192
Query: 333 XPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
AC+ GG FV+ G+VSWG+GC + K G YT V KWI I
Sbjct: 193 ---ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ 249
Query: 381 L 381
Sbjct: 250 F 250
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 116/247 (46%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + ++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFIENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
Length = 240
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 121/250 (48%), Gaps = 18/250 (7%)
Query: 131 LRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKS 190
+ II GK V + F IQ G H CGG +I +LTAAHC +K
Sbjct: 1 MEIIGGKE----VSPHSRPFMASIQY-----GGHHVCGGVLIDPQWVLTAAHCQYRFTKG 51
Query: 191 K-LRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQP 249
+ +++G H+L+ + ++T +++K + R + SNDI +VK++ + N++V+
Sbjct: 52 QSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSD-PQSNDIMLVKLQTAAKLNKHVKM 110
Query: 250 ICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQN 309
+ I + + + C VTGWGA + +S+ S+TLR TV V+ + C S + Y N +
Sbjct: 111 LHIRSKTSLRSGTKCKVTGWGATDPDSLRP-SDTLREVTVTVLSRKLCNSQSYY-NGDPF 168
Query: 310 ILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVS- 368
I M+CAG PL CK V +VS G C KPG+YT ++
Sbjct: 169 ITKDMVCAGDAKGQKDSCKGDAGGPLICK----GVFHAIVSGGHECGVATKPGIYTLLTK 224
Query: 369 YYTKWINDRI 378
Y WI +
Sbjct: 225 KYQTWIKSNL 234
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 74 VKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LR 132
++I+GG + P+ IQ G H CGG +I +LTAAHC +K +
Sbjct: 1 MEIIGGKEVSPHSRPFMASIQY-----GGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPT 55
Query: 133 IIVGKHNLNGVDKFEKTFKVE 153
+++G H+L+ + ++T +++
Sbjct: 56 VVLGAHSLSKNEASKQTLEIK 76
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
S G H CGG+++S +++AAHC KS LR+ +G+H++ V++ + + +V+
Sbjct: 17 SLNSGYHFCGGSLVSKDWVVSAAHCY----KSVLRVRLGEHHIR-VNEGTEQYISSSSVI 71
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H +NDI ++K+ NQYV + +P + AA + C V+GWG + D
Sbjct: 72 RHPNYSSYNINNDIMLIKLTKPATLNQYVHAVALP-TECAADATMCTVSGWGNTMSSVAD 130
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
+ L+ ++ ++ C +S I SM CAGYL P+ C
Sbjct: 131 --GDKLQCLSLPILSHADCANSY-----PGMITQSMFCAGYLEGGKDSCQGDSGGPVVCN 183
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
VL GVVSWG GCA+++ PGVY +V + W+ D +
Sbjct: 184 ----GVLQGVVSWGYGCAERDHPGVYAKVCVLSGWVRDTM 219
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 98 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNL 140
S G H CGG+++S +++AAHC KS LR+ +G+H++
Sbjct: 17 SLNSGYHFCGGSLVSKDWVVSAAHCY----KSVLRVRLGEHHI 55
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 103/222 (46%), Gaps = 15/222 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKV 213
QV T G H CGG +IS +LTAAHCL+ + S ++I+G H ++ + +V
Sbjct: 576 QVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEV 635
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS-DWCVVTGWGAQ 272
+ L + DIA++K+ V P C+P + A C +TGWG
Sbjct: 636 SRLFLEPTRK-------DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET 688
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXX 332
+ L+ A + VI+ C Y N + + LCAG+L
Sbjct: 689 QGTFGAGL---LKEAQLPVIENKVCNR---YEFLNGRVQSTELCAGHLAGGTDSCQGDSG 742
Query: 333 XPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C +++L GV SWG GCA+ NKPGVY RVS + WI
Sbjct: 743 GPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 784
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 56 AMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTV 115
+ CG V EP++ ++VGG ++PWQV ++ R G H CGG +IS
Sbjct: 545 SFDCGKPQV--EPKKCPG-RVVGGCVAHPHSWPWQVSLRTRF----GMHFCGGTLISPEW 597
Query: 116 ILTAAHCLQGISK-SKLRIIVGKH 138
+LTAAHCL+ + S ++I+G H
Sbjct: 598 VLTAAHCLEKSPRPSSYKVILGAH 621
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ +IA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 16/235 (6%)
Query: 150 FKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK 209
++V +Q SS GQ H CGG ++ + +LTAAHC+ S R+++G+H+L+ +
Sbjct: 14 WQVSLQYDSS-GQWRHTCGGTLVDQSWVLTAAHCIS--SSRTYRVVLGRHSLSTNEPGSL 70
Query: 210 TFKVEKAVLHHRFRK-EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVT 267
KV K V+H + + ++ NDIA++K+ + +Q C+P +++ C VT
Sbjct: 71 AVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVT 130
Query: 268 GWG-AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
GWG Q + DI L+ + V+D TC +G++ + +M+CAG +
Sbjct: 131 GWGRLQTNGASPDI---LQQGQLLVVDYATCSKPGWWGST---VKTNMICAGG-DGIISS 183
Query: 327 XXXXXXXPLACK-IGGRFVLSGVVSWGD--GCAKKNKPGVYTRVSYYTKWINDRI 378
PL C+ G++ + G+VS+G GC +KP V+TRVS Y WIN I
Sbjct: 184 CNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+VGG ++PWQV +Q SS GQ H CGG ++ + +LTAAHC+ S R+++
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSS-GQWRHTCGGTLVDQSWVLTAAHCIS--SSRTYRVVL 57
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+H+L+ + KV
Sbjct: 58 GRHSLSTNEPGSLAVKVS 75
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 115/245 (46%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVD-KFEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ + EK +EK
Sbjct: 55 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKI 114
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 115 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 174
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 175 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 229
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 230 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282
Query: 377 RIQML 381
I
Sbjct: 283 VIDQF 287
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISK 128
+IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + ++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTE 86
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 87 NDLLVRIGKHSRTRYEANIEKISMLEKIY 115
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 12/220 (5%)
Query: 165 HQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRK 224
H CGG +I+ +LTAAHC+ + R+ VGK+NL D+ F + H+
Sbjct: 28 HTCGGTLIASNFVLTAAHCIS--NTRTYRVAVGKNNLEVEDEEGSLFVGVDTIHVHKRWN 85
Query: 225 EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAESIDDISNT 283
NDIA++K+ ++E + +Q C+P++D+ D+ C VTGWG I++
Sbjct: 86 ALLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGRLWTNG--PIADK 143
Query: 284 LRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKI-GGR 342
L+ V+D TC +G + +M+CAG + PL C++ G
Sbjct: 144 LQQGLQPVVDHATCSRIDWWGF---RVKKTMVCAGG-DGVISACNGDSGGPLNCQLENGS 199
Query: 343 FVLSGVVSWGD--GCAKKNKPGVYTRVSYYTKWINDRIQM 380
+ + G+VS+G GC + KP VYTRVS Y WIN+++Q+
Sbjct: 200 WEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKMQL 239
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQ-VRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 134
+VGG ++PWQ+ +Q +++ T + H CGG +I+ +LTAAHC+ + R+
Sbjct: 1 VVGGEDARPHSWPWQISLQYLKNDTWR--HTCGGTLIASNFVLTAAHCIS--NTRTYRVA 56
Query: 135 VGKHNLNGVDKFEKTF 150
VGK+NL D+ F
Sbjct: 57 VGKNNLEVEDEEGSLF 72
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVD-KFEKTFKVEKA 216
E CG ++ISD +LTAAHCL + + L + +GKH+ + K EK ++K
Sbjct: 74 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKI 133
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ + DIA++K++ IE + Y+ P+C+PD+ AA A VTGWG +
Sbjct: 134 YIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNR 193
Query: 273 NAESIDDIS----NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C++S + I D+M CAGY
Sbjct: 194 RETWTTSVAEVQPSVLQVVNLPLVERPVCKAS-----TRIRITDNMFCAGYKPGEGKRGD 248
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 249 -------ACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 301
Query: 377 RIQML 381
I L
Sbjct: 302 VIDRL 306
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 115/245 (46%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVD-KFEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ + EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQML 381
I
Sbjct: 253 VIDQF 257
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYEANIEKISMLEKIY 85
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 17/220 (7%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
S G H CGG+++++ +++AAHC KS++ + +G+HN+ + E+ + +
Sbjct: 17 SLNSGYHFCGGSLVNENWVVSAAHCY----KSRVAVRLGEHNIKVTEGSEQFISSSRVIR 72
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H + NDI ++K+ N YVQP+ +P A A C V+GWG + + D
Sbjct: 73 HPNYSSYNI-DNDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSSTAD 130
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
+ L+ + ++ + C +S I ++M CAGYL P+ C
Sbjct: 131 --GDKLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVCN 183
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G L GVVSWG GCA+ PGVY +V + W+ +
Sbjct: 184 --GE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVD-KFEKTFKVEKA 216
E CG ++ISD +LTAAHCL + + L + +GKH+ + K EK ++K
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ + DIA++K++ IE + Y+ P+C+PD+ AA A VTGWG +
Sbjct: 85 YIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNR 144
Query: 273 NAESIDDIS----NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C++S + I D+M CAGY
Sbjct: 145 RETWTTSVAEVQPSVLQVVNLPLVERPVCKAS-----TRIRITDNMFCAGYKPGEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQML 381
I L
Sbjct: 253 VIDRL 257
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 23/229 (10%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQG--------------ISKSKLRIIVGKHNLNGVDKFE 208
G+ CGG+++ + I+TAAHCL +S S +II+GKH D+ E
Sbjct: 23 GQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENE 82
Query: 209 KTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTG 268
+ V+ LH ++ T ND+A+V++ + N +V PIC+P+ + +V+G
Sbjct: 83 QHLGVKHTTLHPQY-DPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGA-MVIVSG 140
Query: 269 WGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
WG Q + + TL + ++D +TC+ + Y + + M+CAG
Sbjct: 141 WGKQFLQRFPE---TLMEIEIPIVDHSTCQKA--YAPLKKKVTRDMICAGEKEGGKDACA 195
Query: 329 XXXXXPLAC--KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
P+ + G++ L G VSWGD C KK++ GVY+ + + WI
Sbjct: 196 GDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQ 244
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG---------- 125
I G G PW + S G+ CGG+++ + I+TAAHCL
Sbjct: 1 IFNGRPAQKGTTPWIAML----SHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLR 56
Query: 126 ----ISKSKLRIIVGKHNLNGVDKFEKTFKVE 153
+S S +II+GKH D+ E+ V+
Sbjct: 57 DSDLLSPSDFKIILGKHWRLRSDENEQHLGVK 88
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 25/240 (10%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYL---NXXXX 325
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 326 XXXXXXXXPLACK--IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQE 383
P K R+ G+VSWG+G + K G YT V KWI I E
Sbjct: 200 AAEGDSGGPFVMKSPFNNRWYQMGIVSWGEGADRDGKYGFYTHVFRLKKWIQKVIDQFGE 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 23/228 (10%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQG--------------ISKSKLRIIVGKHNLNGVDKFE 208
G+ CGG+++ + I+TAAHCL +S S +II+GKH D+ E
Sbjct: 178 GQPFCGGSLLGSSWIVTAAHCLHQSLDPEDPTLRDSDLLSPSDFKIILGKHWRLRSDENE 237
Query: 209 KTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTG 268
+ V+ LH ++ T ND+A+V++ + N +V PIC+P+ + +V+G
Sbjct: 238 QHLGVKHTTLHPQY-DPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGA-MVIVSG 295
Query: 269 WGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
WG Q + + TL + ++D +TC+ + Y + + M+CAG
Sbjct: 296 WGKQFLQRFPE---TLMEIEIPIVDHSTCQKA--YAPLKKKVTRDMICAGEKEGGKDACA 350
Query: 329 XXXXXPLAC--KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
P+ + G++ L G VSWGD C KK++ GVY+ + + WI
Sbjct: 351 GDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 398
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 18/83 (21%)
Query: 70 RAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG---- 125
R +I G G PW + S G+ CGG+++ + I+TAAHCL
Sbjct: 150 RKLMAQIFNGRPAQKGTTPWIAML----SHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDP 205
Query: 126 ----------ISKSKLRIIVGKH 138
+S S +II+GKH
Sbjct: 206 EDPTLRDSDLLSPSDFKIILGKH 228
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 108/214 (50%), Gaps = 19/214 (8%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CGG +I +LTAAHC K L++ +GKHNL + ++ V +AV+H +
Sbjct: 26 CGGVLIHPLWVLTAAHC----KKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDY-DAA 80
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTLRA 286
+H DI ++++ + ++ +QP+ + +RD +A + C + GWG + A+ D +T++
Sbjct: 81 SHDQDIMLLRLARPAKLSELIQPLPL-ERDCSANTTSCHILGWG-KTADG--DFPDTIQC 136
Query: 287 ATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLS 346
A + ++ + C A G QN MLCAG PL C L
Sbjct: 137 AYIHLVSREECEH-AYPGQITQN----MLCAGDEKYGKDSCQGDSGGPLVCGDH----LR 187
Query: 347 GVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
G+VSWG+ C K KPGVYT V YT WI IQ
Sbjct: 188 GLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+V G ++P+Q + G CGG +I +LTAAHC K L++ +
Sbjct: 1 LVHGGPCDKTSHPYQAALYT-----SGHLLCGGVLIHPLWVLTAAHC----KKPNLQVFL 51
Query: 136 GKHNL 140
GKHNL
Sbjct: 52 GKHNL 56
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 39/242 (16%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVD-KFEKTFKVEKA 216
E CG ++ISD +LTAAHCL + + L + +GKH+ + K EK ++K
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ + DIA++K++ IE + Y+ P+C+PD+ AA A VTGWG +
Sbjct: 85 YIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNR 144
Query: 273 NAESIDDIS----NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C++S + I D+M CAGY
Sbjct: 145 RETWTTSVAEVQPSVLQVVNLPLVERPVCKAS-----TRIRITDNMFCAGYKPGEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VSWG+GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RI 378
I
Sbjct: 253 VI 254
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 40/252 (15%)
Query: 157 RSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEK 209
R S G+ CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK
Sbjct: 23 RRSPGE-RFLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEK 81
Query: 210 TFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCV 265
+EK +H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A
Sbjct: 82 ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGR 141
Query: 266 VTGWGAQNAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLN 321
VTGWG ++ + L+ + ++++ C+ S + I D+M CA Y
Sbjct: 142 VTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAYYKP 196
Query: 322 XXXXXXXXXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSY 369
AC+ GG FV+ G+VSWG+GC + K G YT V
Sbjct: 197 DEGKRGD-------ACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFR 249
Query: 370 YTKWINDRIQML 381
KWI I
Sbjct: 250 LKKWIQKVIDQF 261
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEH-QCGGAIISDTVILTAAHCL------QGISK 128
IV G+ G PWQV + + GE CG ++ISD +LTAAHCL + ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDRWVLTAAHCLLYPPWDKNFTE 60
Query: 129 SKLRIIVGKH-------NLNGVDKFEKTF 150
+ L + +GKH N+ + EK +
Sbjct: 61 NDLLVRIGKHSRTRYERNIEKISMLEKIY 89
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North
Atlantic Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 14/230 (6%)
Query: 150 FKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK 209
+++ +Q +S + H CGG++I ++TAAHC+ S R+++G+HNLN + E+
Sbjct: 14 WQISLQYKSGSSY-YHTCGGSLIRQGWVMTAAHCVD--SARTWRVVLGEHNLNTNEGKEQ 70
Query: 210 TFKVEKAVLHHRFRKEGTHSN-DIAVVKIRGNIEFNQYVQPICIPDRDNAAASD-WCVVT 267
V +H + + DIA++++ N VQ +P + ++ C +T
Sbjct: 71 IMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYIT 130
Query: 268 GWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXX 327
GWG + +S++L+ A + +D TC SS +G++ + +M+CAG
Sbjct: 131 GWG--KTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGST---VKTTMVCAG--GGANSGC 183
Query: 328 XXXXXXPLACKIGGRFVLSGVVSW--GDGCAKKNKPGVYTRVSYYTKWIN 375
PL C++ G + + GV S+ GC KP V+TRVS Y W+N
Sbjct: 184 NGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMN 233
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+VGG ++PWQ+ +Q +S + H CGG++I ++TAAHC+ S R+++
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSY-YHTCGGSLIRQGWVMTAAHCVD--SARTWRVVL 57
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+HNLN + E+ V
Sbjct: 58 GEHNLNTNEGKEQIMTVN 75
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 14/225 (6%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G CGG +I+ +++AAHC I + L ++G+H+L+ D E++ +V + ++
Sbjct: 22 GAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPST 81
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD----NAAASDWCVVTGWGAQNAESI 277
+ GT ++DIA++++ + +V P+C+P+R A + +V+GWG + +
Sbjct: 82 Y-VPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWG----QLL 136
Query: 278 DDISNTLRAATV---KVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
D + L + +++ Q+ + S G+S NI + M CAGY + P
Sbjct: 137 DRGATALELMVLNVPRLMTQDCLQQSRKVGDS-PNITEYMFCAGYSDGSKDSCKGDSGGP 195
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
A G + L+G+VSWG GCA GVYTRVS Y +W+ ++
Sbjct: 196 HATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR 240
>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
pdb|1NPM|B Chain B, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
Length = 225
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 20/217 (9%)
Query: 162 QGEHQ-CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
QGE CGG ++ D +LTAAHC K K + +G H+L D+ E+ +V +++ H
Sbjct: 20 QGERLICGGVLVGDRWVLTAAHC----KKQKYSVRLGDHSLQSRDQPEQEIQVAQSIQHP 75
Query: 221 RFRKEGT--HSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
+ HS+DI +++++ + V+P+ + + C+++GWG + +
Sbjct: 76 CYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQK-CIISGWGTVTSPQ-E 133
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
+ NTL A VK+ QN C A G I + M+CAG N PL C
Sbjct: 134 NFPNTLNCAEVKIYSQNKCER-AYPGK----ITEGMVCAGSSNGADTCQGDSGG-PLVCD 187
Query: 339 IGGRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWI 374
+L G+ SWG D C K KPGVYT++ YT WI
Sbjct: 188 ----GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWI 220
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 106/224 (47%), Gaps = 15/224 (6%)
Query: 165 HQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLN-GVDKFEKTF----KVEKAVL 218
H CGG++++ +LTAAHC + K + R+I G + G +K K VEK ++
Sbjct: 30 HVCGGSLLNSQWLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIII 89
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAA--SDWCVVTGWGAQNAES 276
H ++ + +NDIA++KI + ++ P C+P C V GWG E+
Sbjct: 90 HEKYSAS-SEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQ-EN 147
Query: 277 IDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLA 336
S L+ A V +ID C S+ Y N I + +CAGY PL
Sbjct: 148 ARRTSPMLQEARVDLIDLGLCNSTRWY---NGRIRSTNVCAGYPEGKIDTCQGDSGGPLM 204
Query: 337 CKIGGR--FVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
CK +V+ G+ SWG GCA+ +PGVYT Y WI +I
Sbjct: 205 CKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRS-STGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRI 133
I+GG +GA+PW V +Q+ + + H CGG++++ +LTAAHC + K + R+
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 134 IVG 136
I G
Sbjct: 61 IFG 63
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 19/218 (8%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G CGG +I +LTAAHC K L++ +GKHNL + ++ V +AV+H +
Sbjct: 23 GHLLCGGVLIHPLWVLTAAHC----KKPNLQVFLGKHNLRQQESSQEQSSVVRAVIHPDY 78
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISN 282
+H DI ++++ + ++ +QP+ + +RD +A + C + GWG + A+ D +
Sbjct: 79 -DAASHDQDIMLLRLARPAKLSELIQPLPL-ERDCSAQTTSCHILGWG-KTADG--DFPD 133
Query: 283 TLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGR 342
T++ A + ++ + C A G QN MLCAG PL C
Sbjct: 134 TIQCAYIHLVSREECEH-AYPGQITQN----MLCAGDEKYGKDSCQGDSGGPLVCGDH-- 186
Query: 343 FVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
L G+VSWG+ C K KPGVYT V YT WI IQ
Sbjct: 187 --LRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 222
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 134
K+V G ++P+Q + G CGG +I +LTAAHC K L++
Sbjct: 1 KLVHGGPCDKTSHPYQAALYT-----SGHLLCGGVLIHPLWVLTAAHC----KKPNLQVF 51
Query: 135 VGKHNL 140
+GKHNL
Sbjct: 52 LGKHNL 57
>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
Para-Amidobenzylanmine P1 Group Carry A High Binding
Efficiency
pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
Kallikrein 6 Inhibitors With An Amidinothiophene P1
Group
Length = 223
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 19/218 (8%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G CGG +I +LTAAHC K L++ +GKHNL + ++ V +AV+H +
Sbjct: 22 GHLLCGGVLIHPLWVLTAAHC----KKPNLQVFLGKHNLGQQESSQEQSSVVRAVIHPDY 77
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISN 282
+H DI ++++ + ++ +QP+ + +RD +A + C + GWG + A+ D +
Sbjct: 78 -DAASHDQDIMLLRLARPAKLSELIQPLPL-ERDCSAQTTSCHILGWG-KTADG--DFPD 132
Query: 283 TLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGR 342
T++ A + ++ + C A G QN MLCAG PL C
Sbjct: 133 TIQCAYIHLVSREECEH-AYPGQITQN----MLCAGDEKYGKDSCQGDSGGPLVCGDH-- 185
Query: 343 FVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
L G+VSWG+ C K KPGVYT V YT WI IQ
Sbjct: 186 --LRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+V G ++P+Q + G CGG +I +LTAAHC K L++ +
Sbjct: 1 LVHGGPCDKTSHPYQAALYT-----SGHLLCGGVLIHPLWVLTAAHC----KKPNLQVFL 51
Query: 136 GKHNL 140
GKHNL
Sbjct: 52 GKHNL 56
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 23/227 (10%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ + S G H CGG++I+ +++AAHC KS +++ +G+ N+N V+ E+
Sbjct: 12 VPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNINVVEGNEQFISA 67
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG--A 271
K+++H + T +NDI ++K++ N V I +P A+A C+++GWG
Sbjct: 68 SKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP-TSCASAGTQCLISGWGNTK 125
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ S D+ L+A ++ ++C+S+ I +M CAG
Sbjct: 126 SSGTSYPDVLKCLKA---PILSDSSCKSAYP-----GQITSNMFCAGL--EGGDSCQGDS 175
Query: 332 XXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
P+ C G+ L G+VSWG GCAK NKPGVYT+V Y WI I
Sbjct: 176 GGPVVCS--GK--LQGIVSWGSGCAK-NKPGVYTKVCNYVSWIKQTI 217
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 14/221 (6%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSK-LRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G CGG +I+ +++AAHC I + L ++G+H+L+ D E++ +V + ++
Sbjct: 22 GAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPST 81
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD----NAAASDWCVVTGWGAQNAESI 277
+ GT ++DIA++++ + +V P+C+P+R A + +V+GWG + +
Sbjct: 82 Y-VPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWG----QLL 136
Query: 278 DDISNTLRAATV---KVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
D + L + +++ Q+ + S G+S NI + M CAGY + P
Sbjct: 137 DRGATALVLQVLNVPRLMTQDCLQQSRKVGDS-PNITEYMFCAGYSDGSKDSCKGDSGGP 195
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
A G + L+G+VSWG GCA GVYTRVS Y +W+
Sbjct: 196 HATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQ 236
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK-LRII 134
IVGG P G PWQV + V G CGG +I+ +++AAHC I + L +
Sbjct: 1 IVGGKDCPKGECPWQVLLLV-----NGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAV 55
Query: 135 VGKHNLNGVDKFEKTFKVEIQVRSST---GQGEHQCGGAIISDTVILT 179
+G+H+L+ D E++ +V + ST G H + V+LT
Sbjct: 56 LGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLT 103
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 11/219 (5%)
Query: 165 HQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRK 224
H CGG +I+ +LTAAHC+ + R+ +GK+NL D+ + + H
Sbjct: 41 HTCGGTLITPNHVLTAAHCIS--NTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWN 98
Query: 225 EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAESIDDISNT 283
NDIA++K+ +E +Q C+P + D+ C VTGWG I+
Sbjct: 99 SFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNG--PIAAE 156
Query: 284 LRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRF 343
L+ V+D TC +G + + ++M+CAG + PL C+ G++
Sbjct: 157 LQQGLQPVVDYATCSQRDWWGTT---VKETMVCAGG-DGVISACNGDSGGPLNCQADGQW 212
Query: 344 VLSGVVSWGDG--CAKKNKPGVYTRVSYYTKWINDRIQM 380
+ G+VS+G G C KP V+TRVS Y WIN ++Q+
Sbjct: 213 DVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQL 251
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 9/88 (10%)
Query: 59 CGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQ-VRSSTGQGEHQCGGAIISDTVIL 117
CG+ + +P +A ++VGG ++PWQ+ +Q +R +T + H CGG +I+ +L
Sbjct: 1 CGAPI--FQPNLSA--RVVGGEDAIPHSWPWQISLQYLRDNTWR--HTCGGTLITPNHVL 54
Query: 118 TAAHCLQGISKSKLRIIVGKHNLNGVDK 145
TAAHC+ + R+ +GK+NL D+
Sbjct: 55 TAAHCIS--NTLTYRVALGKNNLEVEDE 80
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 109/237 (45%), Gaps = 16/237 (6%)
Query: 143 VDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLN 202
V++ E ++ +Q G H+CG +I+ T +++AAHC K+ R
Sbjct: 7 VEEGEWPWQASLQW-----DGSHRCGATLINATWLVSAAHCFT-TYKNPARWTASFGVTI 60
Query: 203 GVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAAS 261
K ++ + + ++H ++ K +H DI++ ++ + + V +C+PD
Sbjct: 61 KPSKMKRGLR--RIIVHEKY-KHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPG 117
Query: 262 DWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLN 321
D VTG+GA + N LR A V +ID TC Y N I MLCAG L
Sbjct: 118 DVMFVTGFGALKNDGYS--QNHLRQAQVTLIDATTCNEPQAY---NDAITPRMLCAGSLE 172
Query: 322 XXXXXXXXXXXXPLACKIGGR-FVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDR 377
PL + L+G+VSWGD CAK NKPGVYTRV+ WI +
Sbjct: 173 GKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSK 229
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL 123
IVGGT G +PWQ +Q G H+CG +I+ T +++AAHC
Sbjct: 1 IVGGTEVEEGEWPWQASLQW-----DGSHRCGATLINATWLVSAAHCF 43
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 9/211 (4%)
Query: 167 CGGAIISDTVILTAAHCLQG--ISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRK 224
CG +++S +++AAHC+ G + SK I+G H + + + ++ ++ +
Sbjct: 26 CGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYN 85
Query: 225 EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAESIDDISNT 283
NDIA++ + + + Y+QPI +P+ + C + GWG + ++
Sbjct: 86 RRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGT--TADI 143
Query: 284 LRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRF 343
L+ A V ++ C+ NI ++M+CAGY PL C+ R+
Sbjct: 144 LQEADVPLLSNERCQQQM----PEYNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRW 199
Query: 344 VLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
L+GV S+G CA N+PGVY RVS +T+WI
Sbjct: 200 FLAGVTSFGYECALPNRPGVYARVSRFTEWI 230
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG--ISKSKLRI 133
IVGG+ GA+PW V + CG +++S +++AAHC+ G + SK
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRL-----LCGASLVSSDWLVSAAHCVYGRNLEPSKWTA 55
Query: 134 IVGKH 138
I+G H
Sbjct: 56 ILGLH 60
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 39/247 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VS G GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQMLQE 383
I E
Sbjct: 253 VIDQFGE 259
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 33/242 (13%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHC+ + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PD+ A VTGWG
Sbjct: 85 YVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNL 144
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGY-LNXXXXXXXXXX 331
+I N ++ + ++V++ ++ I D+M CAG+ +N
Sbjct: 145 RETWTTNI-NEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGD---- 199
Query: 332 XXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
AC+ GG FV+ G+VSWG+GC +K K G YT V +WI I
Sbjct: 200 ----ACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWIQKVID 255
Query: 380 ML 381
Sbjct: 256 QF 257
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G G PWQV + +S E CG ++ISD +LTAAHC+ + +++
Sbjct: 1 IVEGWDAEKGIAPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCILYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNVEKISMLEKIY 85
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 17/236 (7%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHC+ + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PD+ A VTGWG
Sbjct: 85 YVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNL 144
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYL---NXXXXXXXX 329
+I N ++ + ++V++ ++ I D+M CAG+
Sbjct: 145 RETWTTNI-NEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEG 203
Query: 330 XXXXPLACK--IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQE 383
P K R+ G+VSWG+GC +K K G YT V WI I E
Sbjct: 204 DSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKAWIQKVIDQFGE 259
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G G PWQV + +S E CG ++ISD +LTAAHC+ + +++
Sbjct: 1 IVEGWDAEKGIAPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCILYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNVEKISMLEKIY 85
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 21/243 (8%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKH 199
+NG + ++ ++ ++ TG H CGG++I++ ++TAAHC G++ S + ++ G+
Sbjct: 17 VNGEEAVPGSWPWQVSLQDKTG--FHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEF 71
Query: 200 NLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNA 258
+ + + K+ K + ++ T +NDI ++K+ F+Q V +C+P D+
Sbjct: 72 DQGSSSEKIQKLKIAKVFKNSKYNSL-TINNDITLLKLSTAASFSQTVSAVCLPSASDDF 130
Query: 259 AASDWCVVTGWGAQ---NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSML 315
AA CV TGWG NA + D L+ A++ ++ C+ +G I D+M+
Sbjct: 131 AAGTTCVTTGWGLTRYTNANTPDR----LQQASLPLLSNTNCKK--YWGT---KIKDAMI 181
Query: 316 CAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
CAG PL CK G + L G+VSWG + PGVY RV+ W+
Sbjct: 182 CAGA--SGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQ 239
Query: 376 DRI 378
+
Sbjct: 240 QTL 242
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 21/243 (8%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKH 199
+NG + ++ ++ ++ TG H CGG++I++ ++TAAHC G++ S + ++ G+
Sbjct: 2 VNGEEAVPGSWPWQVSLQDKTG--FHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEF 56
Query: 200 NLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNA 258
+ + + K+ K + ++ T +NDI ++K+ F+Q V +C+P D+
Sbjct: 57 DQGSSSEKIQKLKIAKVFKNSKYNSL-TINNDITLLKLSTAASFSQTVSAVCLPSASDDF 115
Query: 259 AASDWCVVTGWGAQ---NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSML 315
AA CV TGWG NA + D L+ A++ ++ C+ +G I D+M+
Sbjct: 116 AAGTTCVTTGWGLTRYTNANTPDR----LQQASLPLLSNTNCKK--YWGT---KIKDAMI 166
Query: 316 CAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
CAG PL CK G + L G+VSWG + PGVY RV+ W+
Sbjct: 167 CAGA--SGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQ 224
Query: 376 DRI 378
+
Sbjct: 225 QTL 227
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 39/245 (15%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 273 NAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 145 KETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD 199
Query: 329 XXXXXPLACK--IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
AC+ GG FV+ G+VS G GC + K G YT V KWI
Sbjct: 200 -------ACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQK 252
Query: 377 RIQML 381
I
Sbjct: 253 VIDQF 257
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 19/231 (8%)
Query: 153 EIQVRSSTGQGEHQC-GGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTF 211
I + S G H C GG++I+ +++AAHC KS++++ +G+HN++ ++ E+
Sbjct: 12 SIPYQVSLNSGSHFCSGGSLINSQWVVSAAHCSY---KSRIQVRLGEHNIDVLEGNEQFI 68
Query: 212 KVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGA 271
K + H F T NDI ++K+ N V + +P AA ++ +++GWG
Sbjct: 69 NAAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECSLISGWG- 126
Query: 272 QNAESIDDISNTLRAATVK--VIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX-XX 328
N +S +L ++K V+ ++C+SS I +M+C G+L
Sbjct: 127 -NTKSSGSSYPSLLQCSLKAPVLSDSSCKSSYP-----GQITGNMICVGFLEGGKDSCSQ 180
Query: 329 XXXXXPLACKIGGRFVLSGVVSWGDGC-AKKNKPGVYTRVSYYTKWINDRI 378
P+ C G L G+VSWG GC A+KNKPGVYT+V Y WI I
Sbjct: 181 GDSGGPVVCSNG---QLQGIVSWGYGCSAQKNKPGVYTKVCNYVNWIQQTI 228
>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|B Chain B, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|C Chain C, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
Length = 227
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 110/226 (48%), Gaps = 20/226 (8%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
QV +G H CGG ++++ +LTAAHC ++ + +G L D+ + K
Sbjct: 15 QVALLSGNQLH-CGGVLVNERWVLTAAHC----KMNEYTVHLGSDTLG--DRRAQRIKAS 67
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNA 274
K+ H + + TH ND+ +VK+ + V+ + +P R + C V+GWG +
Sbjct: 68 KSFRHPGYSTQ-THVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTT-CTVSGWGTTTS 125
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
+ S+ L VK+I C + VY + +N SMLCAG + P
Sbjct: 126 PDVTFPSD-LMCVDVKLISPQDC--TKVYKDLLEN---SMLCAGIPDSKKNACNGDSGGP 179
Query: 335 LACKIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
L C R L G+VSWG C + N PGVYT+V +TKWIND ++
Sbjct: 180 LVC----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMK 221
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHC 122
I+ G G++PWQV + +G H CGG ++++ +LTAAHC
Sbjct: 1 IIDGAPCARGSHPWQVALL----SGNQLH-CGGVLVNERWVLTAAHC 42
>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXG|B Chain B, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXH|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXI|A Chain A, High Resolution Structure Of Human Kallikrein 7 In Complex
With Suc-Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXJ|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-ala-pro-phe-chloromethylketone And Copper
Length = 224
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 110/226 (48%), Gaps = 20/226 (8%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
QV +G H CGG ++++ +LTAAHC ++ + +G L D+ + K
Sbjct: 15 QVALLSGNQLH-CGGVLVNERWVLTAAHC----KMNEYTVHLGSDTLG--DRRAQRIKAS 67
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNA 274
K+ H + + TH ND+ +VK+ + V+ + +P R + C V+GWG +
Sbjct: 68 KSFRHPGYSTQ-THVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTT-CTVSGWGTTTS 125
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
+ S+ L VK+I C + VY + +N SMLCAG + P
Sbjct: 126 PDVTFPSD-LMCVDVKLISPQDC--TKVYKDLLEN---SMLCAGIPDSKKNACNGDSGGP 179
Query: 335 LACKIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
L C R L G+VSWG C + N PGVYT+V +TKWIND ++
Sbjct: 180 LVC----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMK 221
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHC 122
I+ G G++PWQV + +G H CGG ++++ +LTAAHC
Sbjct: 1 IIDGAPCARGSHPWQVALL----SGNQLH-CGGVLVNERWVLTAAHC 42
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 13/215 (6%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G H CGG ++ +LTAAHCL ++LR+++G H L D TF ++ A+ H R+
Sbjct: 22 GSHLCGGVLVHPKWVLTAAHCL-AQRMAQLRLVLGLHTL---DSPGLTFHIKAAIQHPRY 77
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNAAASDWCVVTGWGAQNAESIDDIS 281
+ ND+A++++ G ++ ++ ++P+ +P R AA C + GWG + +S
Sbjct: 78 KPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGG--RLS 135
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGG 341
LR ++V+D C +S + N ++ SM+C + PL C G
Sbjct: 136 RVLRELDLQVLDTRMCNNSRFW---NGSLSPSMVCLAADSKDQAPCKGDSGGPLVCGKG- 191
Query: 342 RFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWIN 375
VL+GV+S+ C KP V T V+ Y WI
Sbjct: 192 -RVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIR 225
>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity
Length = 228
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 113/216 (52%), Gaps = 16/216 (7%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G H CGG ++++ +L+AAHCL+ + K+++++G H+L+ + ++ + V +AV H +
Sbjct: 22 GAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDY 81
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIP--DRDNAAASDWCVVTGWGAQNAESIDDI 280
+ + T +D+ ++++ V+P+ DRD A + C V GWG N
Sbjct: 82 QPD-TIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGT-LCDVAGWGIVNHAG--RR 137
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIG 340
++L+ + V+D+ TC + + I + ++CA + PL C G
Sbjct: 138 PDSLQHVLLPVLDRATCNRRT---HHDGAITERLMCAE--SNRRDSCKGDSGGPLVC--G 190
Query: 341 GRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWIN 375
G VL GVVSWG C + KPG+YTRV+ Y WI+
Sbjct: 191 G--VLEGVVSWGSRVCGNRKKPGIYTRVASYAAWID 224
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG A P+ +Q+ G H CGG ++++ +L+AAHCL+ + K+++++
Sbjct: 1 ILGGREAEAHARPYMASVQL-----NGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLL 55
Query: 136 GKHNLNGVDKFEKTFKV 152
G H+L+ + ++ + V
Sbjct: 56 GAHSLSQPEPSKRLYDV 72
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 13/215 (6%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G H CGG ++ +LTAAHCL ++LR+++G H L D TF ++ A+ H R+
Sbjct: 22 GSHLCGGVLVHPKWVLTAAHCL-AQRMAQLRLVLGLHTL---DSPGLTFHIKAAIQHPRY 77
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNAAASDWCVVTGWGAQNAESIDDIS 281
+ N++A++++ G ++ ++ ++P+ +P R AA C + GWG + +S
Sbjct: 78 KPVPALENNLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGG--RLS 135
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGG 341
LR ++V+D C +S + N ++ SM+C + PL C G
Sbjct: 136 RVLRELDLQVLDTRMCNNSRFW---NGSLSPSMVCLAADSKDQAPCKGDSGGPLVCGKG- 191
Query: 342 RFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWIN 375
VL+GV+S+ C KP V T V+ Y WI
Sbjct: 192 -RVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIR 225
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ +Q G H CGG ++ +LTAAHCL ++LR+++
Sbjct: 1 IIGGREVIPHSRPYMASLQ-----RNGSHLCGGVLVHPKWVLTAAHCL-AQRMAQLRLVL 54
Query: 136 GKHNLNGVDKFEKTFKVEIQVR 157
G H L D TF ++ ++
Sbjct: 55 GLHTL---DSPGLTFHIKAAIQ 73
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 17/234 (7%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHC+ + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWGAQ 272
+H R+ DIA++K++ + F+ Y+ P+C+PD+ A VTGWG
Sbjct: 85 YVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNL 144
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYL---NXXXXXXXX 329
+I N ++ + ++V++ ++ I D+M CAG+
Sbjct: 145 RETWTTNI-NEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEG 203
Query: 330 XXXXPLACK--IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQML 381
P K R+ G+VS G GC +K K G YT V +WI I
Sbjct: 204 DSGGPFVMKSPFNNRWYQMGIVSAGAGCDRKGKYGFYTHVFRLKRWIQKVIDQF 257
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G G PWQV + +S E CG ++ISD +LTAAHC+ + +++
Sbjct: 1 IVEGWDAEKGIAPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCILYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNVEKISMLEKIY 85
>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin
pdb|2PSY|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin And Zinc
Length = 227
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 19/215 (8%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGV-DKFEKTFKVEKAVLHHRFRKE 225
CG ++ +LTAAHC K R+ +G ++L+ V + ++ F+ K++ H +
Sbjct: 27 CGAVLVHPQWLLTAAHC----RKKVFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHP 82
Query: 226 GTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTLR 285
G HSND+ ++K+ I + V+PI + +A + C+V+GWG + + L+
Sbjct: 83 G-HSNDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTK-CLVSGWGTTKSPQVH-FPKVLQ 139
Query: 286 AATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVL 345
+ V+ Q C + + I D+M CAG P+ C L
Sbjct: 140 CLNISVLSQKRCEDAY-----PRQIDDTMFCAGD-KAGRDSCQGDSGGPVVCNGS----L 189
Query: 346 SGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
G+VSWGD CA+ N+PGVYT + +TKWI + IQ
Sbjct: 190 QGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+ G+ PWQ + +R + + CG ++ +LTAAHC K R+ +
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPN----QLYCGAVLVHPQWLLTAAHC----RKKVFRVRL 52
Query: 136 GKHNLNGV 143
G ++L+ V
Sbjct: 53 GHYSLSPV 60
>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|Z Chain Z, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 237
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 26/226 (11%)
Query: 164 EHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF- 222
++ CGG ++ +LTAAHC ++ +GK+NL + + V KA+ H F
Sbjct: 23 QYLCGGVLLDPNWVLTAAHCYD----DNYKVWLGKNNLFKDEPSAQHRFVSKAIPHPGFN 78
Query: 223 ----RK-----EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
RK E +SND+ ++++ + V+PI +P + S C+ +GWG+
Sbjct: 79 MSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKPITLPTEEPKLGST-CLASGWGSIT 137
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
++ L +K++ C + + + + D+MLCAG ++
Sbjct: 138 PTKFQ-FTDDLYCVNLKLLPNEDCAKAHI-----EKVTDAMLCAGEMDGGKDTCKGDSGG 191
Query: 334 PLACKIGGRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRI 378
PL C VL G+ SWG C + + PGVYT+++ +T WI D +
Sbjct: 192 PLICD----GVLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTM 233
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 25/237 (10%)
Query: 144 DKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNG 203
+ + + +QV GEH CGG ++++ +L+AAHCL+ + K+++++G H+L+
Sbjct: 8 EAHARPYMASVQV-----NGEHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQ 62
Query: 204 VDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP--DRDNAAAS 261
+ ++ + V +AV H R + T +D+ ++++ V+P+ DRD +
Sbjct: 63 PEPSKRLYDVLRAVPHPDSRPD-TIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVEPGT 121
Query: 262 DWCVVTGWG--AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGY 319
C V GWG + D + + L + V+D+ TC + + I M+CA
Sbjct: 122 -LCDVAGWGIVSHAGRRPDRLQHVL----LPVLDRATCNRRT---HHDGAITQRMMCAE- 172
Query: 320 LNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWIN 375
+ PL C GG VL GVV+ G C + KPG+YTRV+ Y WI+
Sbjct: 173 -SNRRDSCKGDSGGPLVC--GG--VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWID 224
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG A P+ +QV GEH CGG ++++ +L+AAHCL+ + K+++++
Sbjct: 1 ILGGREAEAHARPYMASVQV-----NGEHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLL 55
Query: 136 GKHNLNGVDKFEKTFKV 152
G H+L+ + ++ + V
Sbjct: 56 GAHSLSQPEPSKRLYDV 72
>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a
pdb|2XWA|B Chain B, Crystal Structure Of Complement Factor D Mutant R202a
Length = 228
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 20/218 (9%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G H CGG ++++ +L+AAHCL+ + K+++++G H+L+ + ++ + V +AV H
Sbjct: 22 GAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDS 81
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIP----DRDNAAASDWCVVTGWGAQNAESID 278
+ + T +D+ ++++ V+P +P DRD A + C V GWG N
Sbjct: 82 QPD-TIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGT-LCDVAGWGIVNHAG-- 135
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
++L+ + V+D+ TC + + I + ++CA + PL C
Sbjct: 136 RRPDSLQHVLLPVLDRATCNRRT---HHDGAITERLMCAE--SNRRDSCKGDSGGPLVC- 189
Query: 339 IGGRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWIN 375
GG VL GVV+ G C + KPG+YTRV+ Y WI+
Sbjct: 190 -GG--VLEGVVTSGSAVCGNRKKPGIYTRVASYAAWID 224
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG A P+ +Q+ G H CGG ++++ +L+AAHCL+ + K+++++
Sbjct: 1 ILGGREAEAHARPYMASVQL-----NGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLL 55
Query: 136 GKHNLNGVDKFEKTFKV 152
G H+L+ + ++ + V
Sbjct: 56 GAHSLSQPEPSKRLYDV 72
>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|B Chain B, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|C Chain C, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|D Chain D, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
Length = 235
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 123/249 (49%), Gaps = 29/249 (11%)
Query: 132 RIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK 191
RI+ G+ + + + +Q+ G H CGG ++++ +L+AAHCL+ + K
Sbjct: 7 RILGGRE----AEAHARPYMASVQL-----NGAHLCGGVLVAEQWVLSAAHCLEDAADGK 57
Query: 192 LRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPIC 251
+++++G H+L+ + ++ + V +AV H + + T +D+ ++++ V+P
Sbjct: 58 VQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD-TIDHDLLLLQLSEKATLGPAVRP-- 114
Query: 252 IP----DRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSN 307
+P DRD A + C V GWG N ++L+ + V+D+ TC + +
Sbjct: 115 LPWQRVDRDVAPGT-LCDVAGWGIVNHAG--RRPDSLQHVLLPVLDRATCNRRT---HHD 168
Query: 308 QNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDG-CAKKNKPGVYTR 366
I + ++CA + PL C GG VL GVV+ G C + KPG+YTR
Sbjct: 169 GAITERLMCAE--SNRRDSCKGDSGGPLVC--GG--VLEGVVTSGSRVCGNRKKPGIYTR 222
Query: 367 VSYYTKWIN 375
V+ Y WI+
Sbjct: 223 VASYAAWID 231
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 134
+I+GG A P+ +Q+ G H CGG ++++ +L+AAHCL+ + K++++
Sbjct: 7 RILGGREAEAHARPYMASVQL-----NGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVL 61
Query: 135 VGKHNLNGVDKFEKTFKV 152
+G H+L+ + ++ + V
Sbjct: 62 LGAHSLSQPEPSKRLYDV 79
>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a
pdb|2XWB|I Chain I, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|J Chain J, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 228
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 20/218 (9%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G H CGG ++++ +L+AAHCL+ + K+++++G H+L+ + ++ + V +AV H
Sbjct: 22 GAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDS 81
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIP----DRDNAAASDWCVVTGWGAQNAESID 278
+ + T +D+ ++++ V+P +P DRD A + C V GWG N
Sbjct: 82 QPD-TIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGT-LCDVAGWGIVNHAG-- 135
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
++L+ + V+D+ TC + + I + ++CA + PL C
Sbjct: 136 RRPDSLQHVLLPVLDRATCNRRT---HHDGAITERLMCAE--SNRRDSCKGDAGGPLVC- 189
Query: 339 IGGRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWIN 375
GG VL GVV+ G C + KPG+YTRV+ Y WI+
Sbjct: 190 -GG--VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWID 224
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG A P+ +Q+ G H CGG ++++ +L+AAHCL+ + K+++++
Sbjct: 1 ILGGREAEAHARPYMASVQL-----NGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLL 55
Query: 136 GKHNLNGVDKFEKTFKV 152
G H+L+ + ++ + V
Sbjct: 56 GAHSLSQPEPSKRLYDV 72
>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme
pdb|1DSU|B Chain B, Human Factor D, Complement Activating Enzyme
pdb|1DFP|A Chain A, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DFP|B Chain B, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DIC|A Chain A, Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
pdb|1BIO|A Chain A, Human Complement Factor D In Complex With Isatoic
Anhydride Inhibitor
pdb|1HFD|A Chain A, Human Complement Factor D In A P21 Crystal Form
pdb|4D9R|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 20/218 (9%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G H CGG ++++ +L+AAHCL+ + K+++++G H+L+ + ++ + V +AV H
Sbjct: 22 GAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDS 81
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIP----DRDNAAASDWCVVTGWGAQNAESID 278
+ + T +D+ ++++ V+P +P DRD A + C V GWG N
Sbjct: 82 QPD-TIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGT-LCDVAGWGIVNHAG-- 135
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
++L+ + V+D+ TC + + I + ++CA + PL C
Sbjct: 136 RRPDSLQHVLLPVLDRATCNRRT---HHDGAITERLMCAE--SNRRDSCKGDSGGPLVC- 189
Query: 339 IGGRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWIN 375
GG VL GVV+ G C + KPG+YTRV+ Y WI+
Sbjct: 190 -GG--VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWID 224
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG A P+ +Q+ G H CGG ++++ +L+AAHCL+ + K+++++
Sbjct: 1 ILGGREAEAHARPYMASVQL-----NGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLL 55
Query: 136 GKHNLNGVDKFEKTFKV 152
G H+L+ + ++ + V
Sbjct: 56 GAHSLSQPEPSKRLYDV 72
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 26/226 (11%)
Query: 164 EHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF- 222
++QCGG ++ +LTAAHC K ++ +GK+N + ++ V KA+ H F
Sbjct: 26 KYQCGGVLLDRNWVLTAAHCYN----DKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFN 81
Query: 223 ---------RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
+ E +SND+ ++++ + V+PI +P + S C+ +GWG+
Sbjct: 82 MSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGST-CLASGWGSTT 140
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ L+ +K++ C + + D+MLCAG ++
Sbjct: 141 PIKF-KYPDDLQCVNLKLLPNEDCDKA-----HEMKVTDAMLCAGEMDGGSYTCEHDSGG 194
Query: 334 PLACKIGGRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRI 378
PL C +L G+ SWG + C + +P VYT++ ++ WI + +
Sbjct: 195 PLICD----GILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM 236
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 88 PWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNL 140
PW V + + ++QCGG ++ +LTAAHC K ++ +GK+N
Sbjct: 16 PWHVAVYRFN-----KYQCGGVLLDRNWVLTAAHCYN----DKYQVWLGKNNF 59
>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|2ZCK|P Chain P, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|3QUM|P Chain P, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|Q Chain Q, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 237
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 31/246 (12%)
Query: 144 DKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNG 203
+K + ++V + R G CGG ++ +LTAAHC+ ++K I++G+H+L
Sbjct: 8 EKHSQPWQVLVASR-----GRAVCGGVLVHPQWVLTAAHCI----RNKSVILLGRHSLFH 58
Query: 204 VDKFEKTFKV---------EKAVLHHRFRKEGTHS-NDIAVVKIRGNIEFNQYVQPICIP 253
+ + F+V + ++L +RF + G S +D+ ++++ E V+ + +P
Sbjct: 59 PEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLP 118
Query: 254 DRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDS 313
++ A + C +GWG+ E L+ + VI + C Q +
Sbjct: 119 TQEPALGTT-CYASGWGSIEPEEFL-TPKKLQCVDLHVISNDVCAQV-----HPQKVTKF 171
Query: 314 MLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTK 372
MLCAG PL C VL G+ SWG + CA +P +YT+V +Y K
Sbjct: 172 MLCAGRWTGGKSTCSGDSGGPLVCN----GVLQGITSWGSEPCALPERPSLYTKVVHYRK 227
Query: 373 WINDRI 378
WI D I
Sbjct: 228 WIKDTI 233
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 106/222 (47%), Gaps = 26/222 (11%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G +CGG +I + +LTAAHC S SK+++ +G HN+ +K ++ V K + H +
Sbjct: 26 GSKKCGGFLIREDFVLTAAHC----SGSKIQVTLGAHNIKEQEKMQQIIPVVKIIPHPAY 81
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDDIS 281
+ T SNDI ++K++ + + V+P+ +P R+ D C V GWG + S
Sbjct: 82 NSK-TISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGP--MGKYS 138
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSM--LCAGYLNXXXXXXXXXXXXPLACKI 339
+TL+ + V + C S +N D +CAG PL CK
Sbjct: 139 DTLQEVELTVQEDQKCESYL------KNYFDKANEICAGDPKIKRASFRGDSGGPLVCKK 192
Query: 340 GGRFVLSGVVSWG--DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
V +G+VS+G DG + P +T+VS + WI ++
Sbjct: 193 ----VAAGIVSYGQNDG----STPRAFTKVSTFLSWIKKTMK 226
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ +Q+ G +CGG +I + +LTAAHC S SK+++ +
Sbjct: 1 IIGGHEAKPHSRPYMAYLQIMDEY-SGSKKCGGFLIREDFVLTAAHC----SGSKIQVTL 55
Query: 136 GKHNLNGVDKFEKTFKV 152
G HN+ +K ++ V
Sbjct: 56 GAHNIKEQEKMQQIIPV 72
>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|B Chain B, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|C Chain C, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
Length = 241
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 11/244 (4%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKH 199
+ G + F ++ + +G H CG +++S T L+A+HC+ G+ + +R+I G
Sbjct: 2 IGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLW 61
Query: 200 NLNGVDKFEKTFKVEKAVLHHRF-RKEGTHSNDIAVVKIRGNIEFNQYVQPICIP-DRDN 257
+ +T V+ +H + ++SNDIA++ + +I +Q +P + +N
Sbjct: 62 QQSDTSG-TQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNN 120
Query: 258 AAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCA 317
A CV++GWG + +++ + L+ +++ VI C ++A+ G NI D+ +C
Sbjct: 121 DYAGTTCVISGWG--RTDGTNNLPDILQKSSIPVITTAQC-TAAMVGVGGANIWDNHICV 177
Query: 318 GYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSW----GDGCAKKNKPGVYTRVSYYTKW 373
PL C GG V+ GV SW G G + P VYTRVS Y W
Sbjct: 178 QDPAGNTGACNGDSGGPLNCPDGGTRVV-GVTSWVVSSGLGACLPDYPSVYTRVSAYLGW 236
Query: 374 INDR 377
I D
Sbjct: 237 IGDN 240
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
++GGT+ G +PWQ+ Q +S G H CG +++S T L+A+HC+ G+ + +R+I
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQS--GSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIA 58
Query: 136 G 136
G
Sbjct: 59 G 59
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 34/245 (13%)
Query: 142 GVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHN 200
G D + ++ +R S G H+CG +I+ + +LTAAHC+ G+S ++L++ VG +
Sbjct: 4 GKDAPVGKYPYQVSLRLS---GSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNY 60
Query: 201 LNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAA 260
L+ + + VE AV++ + + ND+A+V + I+FN VQPI + D
Sbjct: 61 LS---ESGDVYDVEDAVVNKNY-DDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLE 116
Query: 261 SDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYL 320
S+ C +TGWG+ + N L+ + V Q C ++DS +C
Sbjct: 117 SNPCTLTGWGSTRLGG--NTPNALQEIELIVHPQKQCER------DQWRVIDSHICT--- 165
Query: 321 NXXXXXXXXXXXXPLAC--KIGGRFVLS----GVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
AC GG V + G+VS+G CA +P VYTRVS + WI
Sbjct: 166 --------LTKRGEGACHGDSGGPLVANGAQIGIVSFGSPCA-LGEPDVYTRVSSFVSWI 216
Query: 375 NDRIQ 379
N ++
Sbjct: 217 NANLK 221
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRII 134
IVGG P G YP+QV +++ G H+CG +I+ + +LTAAHC+ G+S ++L++
Sbjct: 1 IVGGKDAPVGKYPYQVSLRL-----SGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVH 55
Query: 135 VGKHNL 140
VG + L
Sbjct: 56 VGTNYL 61
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 13/230 (5%)
Query: 161 GQGEHQ--CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK----TFKVE 214
G GE Q CGG++I+ +V+LT AHC+ + I + + + + E+ K+
Sbjct: 156 GSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIR 215
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNA 274
+ ++H F + T ND+A++ + + + IC+P + S C +GWG +
Sbjct: 216 QVIIHSNFNPK-TVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEF 274
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSN-QNILD-SMLCAGYLNXXXXXXXXXXX 332
S SN L+ + +D++ C++ + +LD + +CAG
Sbjct: 275 GSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGG-EQGKDTCTGDGG 333
Query: 333 XPLAC---KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C + R++ G+V+WG GC +N PGVY V+++ WI+ +Q
Sbjct: 334 SPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQ 383
>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human
Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With
Vacant Active Site
Length = 238
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 101/225 (44%), Gaps = 27/225 (12%)
Query: 166 QCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLH------ 219
QCGG ++ +LTAAHC+ ++ +G+HNL + + V ++ H
Sbjct: 25 QCGGILVHRQWVLTAAHCI----SDNYQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMS 80
Query: 220 ----HRFRKEGTHSNDIAVVKIRGNIE-FNQYVQPICIPDRDNAAASDWCVVTGWGAQNA 274
H + + +S+D+ ++++ + V+ + +P + S C+ +GWG+
Sbjct: 81 LLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEVGST-CLASGWGSIEP 139
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXP 334
E+ + L+ +K++ + C+ + V Q + D MLC G+L P
Sbjct: 140 ENFS-FPDDLQCVDLKILPNDECKKAHV-----QKVTDFMLCVGHLEGGKDTCVGDSGGP 193
Query: 335 LACKIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRI 378
L C VL GV SWG C NKP V RV Y KWI D I
Sbjct: 194 LMCD----GVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTI 234
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + PWQ + S+ QCGG ++ +LTAAHC+ ++ +
Sbjct: 1 IVGGWECEQHSQPWQAALYHFST-----FQCGGILVHRQWVLTAAHCI----SDNYQLWL 51
Query: 136 GKHNL 140
G+HNL
Sbjct: 52 GRHNL 56
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 125/309 (40%), Gaps = 57/309 (18%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 134
KI+ G T +PW I ++S+ + CGG++I++ I+TAAHC+ G ++ +
Sbjct: 22 KILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAG----RVLRV 77
Query: 135 VGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRI 194
VG N ++++ + C GA+ R+
Sbjct: 78 VGALN-------------KVRLGEWNTATDPDCYGAV---------------------RV 103
Query: 195 IVGKHNLNGVDKFEKTFKVEKAVLHHRF---RKEGTHSNDIAVVKIRGNIEFNQYVQPIC 251
V ++ +E+ + H + K+ H DIA++++ +EF Y++P+C
Sbjct: 104 CVPDKPID--------LGIEETIQHPDYVDGSKDRYH--DIALIRLNRQVEFTNYIRPVC 153
Query: 252 IPD-RDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNI 310
+P + V GWG I L V V+ C + +G + +
Sbjct: 154 LPQPNEEVQVGQRLTVVGWGRTETGQYSTIKQKL---AVPVVHAEQC--AKTFGAAGVRV 208
Query: 311 LDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYY 370
S LCAG LA + +F L G+VS+G C + PG+YT+V Y
Sbjct: 209 RSSQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKY 268
Query: 371 TKWINDRIQ 379
WI I+
Sbjct: 269 RDWIEGNIR 277
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 20/213 (9%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CGG +IS +LTAAHC ++ +I+G H++ + ++ KVEK ++H +
Sbjct: 30 CGGFLISRQFVLTAAHC----KGREITVILGAHDVRKRESTQQKIKVEKQIIHESYNSV- 84
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPD-RDNAAASDWCVVTGWGAQNAESIDDISNTLR 285
+ +DI ++K+ +E V + +P D C GWG D S TLR
Sbjct: 85 PNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVR--DPTSYTLR 142
Query: 286 AATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVL 345
++++D+ C Y Q +C G PL C V
Sbjct: 143 EVELRIMDEKACVDYRYYEYKFQ------VCVGSPTTLRAAFMGDSGGPLLCA----GVA 192
Query: 346 SGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G+VS+G AK P ++TRVS Y WIN I
Sbjct: 193 HGIVSYGHPDAK--PPAIFTRVSTYVPWINAVI 223
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + + P+ + + + G CGG +IS +LTAAHC ++ +I+
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGL-RVICGGFLISRQFVLTAAHC----KGREITVIL 55
Query: 136 GKHNLNGVDKFEKTFKVEIQV 156
G H++ + ++ KVE Q+
Sbjct: 56 GAHDVRKRESTQQKIKVEKQI 76
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 26/218 (11%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CGG ++ D +LTAAHC +G S + + +G HN+ ++ ++ V KA+ H + +
Sbjct: 30 CGGFLVRDKFVLTAAHC-KGRS---MTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPD- 84
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDDISNTLR 285
SNDI ++K+ N + + V+P+ +P R+ + D C V GWG + + TL
Sbjct: 85 DRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDG--EFPKTLH 142
Query: 286 AATVKVIDQNTCRS--SAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRF 343
+ V C S + Y +N+ +C G PL CK
Sbjct: 143 EVKLTVQKDQVCESQFQSSYNRANE------ICVGDSKIKGASFEEDSGGPLVCKRAA-- 194
Query: 344 VLSGVVSWG--DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+G+VS+G DG A P V+TRV + WI ++
Sbjct: 195 --AGIVSYGQTDGSA----PQVFTRVLSFVSWIKKTMK 226
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 15/82 (18%)
Query: 76 IVGGT-----STPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK 130
I+GG S PY AY +++ G + CGG ++ D +LTAAHC +G S
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKV------GGKKMFCGGFLVRDKFVLTAAHC-KGRS--- 50
Query: 131 LRIIVGKHNLNGVDKFEKTFKV 152
+ + +G HN+ ++ ++ V
Sbjct: 51 MTVTLGAHNIKAKEETQQIIPV 72
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 26/218 (11%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CGG ++ D +LTAAHC +G S + + +G HN+ ++ ++ V KA+ H + +
Sbjct: 30 CGGFLVRDKFVLTAAHC-KGRS---MTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPD- 84
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDDISNTLR 285
SNDI ++K+ N + + V+P+ +P R+ + D C V GWG + + TL
Sbjct: 85 DRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDG--EFPKTLH 142
Query: 286 AATVKVIDQNTCRS--SAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRF 343
+ V C S + Y +N+ +C G PL CK
Sbjct: 143 EVKLTVQKDQVCESQFQSSYNRANE------ICVGDSKIKGASFRGDSGGPLVCKRAA-- 194
Query: 344 VLSGVVSWG--DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+G+VS+G DG A P V+TRV + WI ++
Sbjct: 195 --AGIVSYGQTDGSA----PQVFTRVLSFVSWIKKTMK 226
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 15/82 (18%)
Query: 76 IVGGT-----STPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSK 130
I+GG S PY AY +++ G + CGG ++ D +LTAAHC +G S
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKV------GGKKMFCGGFLVRDKFVLTAAHC-KGRS--- 50
Query: 131 LRIIVGKHNLNGVDKFEKTFKV 152
+ + +G HN+ ++ ++ V
Sbjct: 51 MTVTLGAHNIKAKEETQQIIPV 72
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 33/241 (13%)
Query: 161 GQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFK-------- 212
G+ CGGA+IS+ ILTAAHC+ G+ I +G+H ++ + + +
Sbjct: 142 GESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPV 201
Query: 213 ----VEKAVLHHRFRKEGTH-SNDIAVVKIRGNIEFNQYVQPICIPDRDN----AAASDW 263
+EK ++H ++ + H +DIA++K+ ++ F ++++PIC+P D A
Sbjct: 202 VNVGIEKHLIHEKY--DARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQIST 259
Query: 264 CVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLC--AGYLN 321
VTGWG S D+ L A V + ++ C S Y + + S LC G L
Sbjct: 260 YFVTGWGTTENGSSSDV---LLQANVPLQPRSAC--SQAY---RRAVPLSQLCVGGGDLQ 311
Query: 322 XXXXXXXXXXXXPLACKIG---GRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDR 377
A +G + V G+VS G C + + PG+YT V Y +WI D
Sbjct: 312 DSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDT 371
Query: 378 I 378
+
Sbjct: 372 M 372
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 97/215 (45%), Gaps = 15/215 (6%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CGG I ILTAAHCL+ + +I + D + ++ H G
Sbjct: 347 CGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAG 406
Query: 227 THSNDIAVVKIR--GNIEFNQYVQ--PICIPDRDNA-AASDWCVVTGWGAQNAESIDDIS 281
T+ NDIA+++++ GN + + + P C+P +D C+V+GWG E ++
Sbjct: 407 TYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGR---EKDNERV 463
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGG 341
+L+ VK+I S YGN + M CAG + PL C
Sbjct: 464 FSLQWGEVKLISN----CSKFYGN--RFYEKEMECAGTYDGSIDACKGDSGGPLVCMDAN 517
Query: 342 RFV-LSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
+ GVVSWG+ C K PGVYT+V+ Y WI+
Sbjct: 518 NVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWIS 552
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 26/250 (10%)
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLR 193
I+G H + F +Q +S +CGG ++ +LTAAHC QG S +
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKS-----RKRCGGILVRKDFVLTAAHC-QG---SSIN 51
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP 253
+ +G HN+ ++ ++ V++ + H + + SNDI ++++ ++ V+P+ +P
Sbjct: 52 VTLGAHNIKEQERTQQFIPVKRPIPHPAYNPK-NFSNDIMLLQLERKAKWTTAVRPLRLP 110
Query: 254 -DRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVY-GNSNQNIL 311
+ C V GWG S+ ++ TL+ + V Q C+ ++ GN ++
Sbjct: 111 SSKAQVKPGQLCSVAGWG---YVSMSTLATTLQEVLLTV--QKDCQCERLFHGNYSR--- 162
Query: 312 DSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYT 371
+ +C G PL CK V G++S+G+ K PGVY +VS++
Sbjct: 163 ATEICVGDPKKTQTGFKGDSGGPLVCKD----VAQGILSYGN--KKGTPPGVYIKVSHFL 216
Query: 372 KWINDRIQML 381
WI ++ L
Sbjct: 217 PWIKRTMKRL 226
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ +Q + +CGG ++ +LTAAHC QG S + + +
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQE--KSRKRCGGILVRKDFVLTAAHC-QG---SSINVTL 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HN+ ++ ++ V+
Sbjct: 55 GAHNIKEQERTQQFIPVK 72
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 19/215 (8%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFE-KTFKVEKAVLHHRFRKE 225
CGG +I+ +LTA HC +G +RI +G HNL ++K + F EK + R +
Sbjct: 25 CGGTLINQEWVLTARHCDRG----NMRIYLGMHNLKVLNKDALRRFPKEKYFCLNT-RND 79
Query: 226 GTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTLR 285
DI ++++ + + ++ P+ +P + S C + GWG + + + +
Sbjct: 80 TIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGS-VCRIMGWGTITSPNAT-LPDVPH 137
Query: 286 AATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVL 345
A + ++D C+++ + + + LCAG L PL C G+F
Sbjct: 138 CANINILDYAVCQAAY------KGLAATTLCAGILEGGKDTCKGDSGGPLICN--GQF-- 187
Query: 346 SGVVS-WGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
G++S G+ CA+ KPG+YT+V YT WI I
Sbjct: 188 QGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIIS 222
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 106 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNL-----NGVDKFEKTFKVEIQVRSST 160
CGG +I+ +LTA HC +G +RI +G HNL + + +F K + R+ T
Sbjct: 25 CGGTLINQEWVLTARHCDRG----NMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDT 80
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 26/222 (11%)
Query: 164 EHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF- 222
E+ CGG +I + ++TAAHC + ++++G++NL + F + V ++ H +
Sbjct: 21 EYLCGGVLIDPSWVITAAHCYS----NNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYI 76
Query: 223 ---------RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
+ HSND+ ++ + + V+ I +P ++ S C+ +GWG+ N
Sbjct: 77 PLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGST-CLASGWGSTN 135
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
+ +S+ L+ + ++ C + N+ D MLCAG +
Sbjct: 136 PSEM-VVSHDLQCVNIHLLSNEKCIETY-----KDNVTDVMLCAGEMEGGKDTCAGDSGG 189
Query: 334 PLACKIGGRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWI 374
PL C VL G+ S G CAK P +Y ++ +T WI
Sbjct: 190 PLICD----GVLQGITSGGATPCAKPKTPAIYAKLIKFTSWI 227
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 115/250 (46%), Gaps = 26/250 (10%)
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLR 193
I+G H + F +Q +S +CGG ++ +LTAAHC QG S +
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKS-----RKRCGGILVRKDFVLTAAHC-QG---SSIN 51
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP 253
+ +G HN+ ++ ++ V++ + H + + SN+I ++++ ++ V+P+ +P
Sbjct: 52 VTLGAHNIKEQERTQQFIPVKRPIPHPAYNPK-NFSNNIMLLQLERKAKWTTAVRPLRLP 110
Query: 254 -DRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVY-GNSNQNIL 311
+ C V GWG S+ ++ TL+ + V Q C+ ++ GN ++
Sbjct: 111 SSKAQVKPGQLCSVAGWG---YVSMSTLATTLQEVLLTV--QKDCQCERLFHGNYSR--- 162
Query: 312 DSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYT 371
+ +C G PL CK V G++S+G+ K PGVY +VS++
Sbjct: 163 ATEICVGDPKKTQTGFKGDSGGPLVCKD----VAQGILSYGN--KKGTPPGVYIKVSHFL 216
Query: 372 KWINDRIQML 381
WI ++ L
Sbjct: 217 PWIKRTMKRL 226
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ +Q + +CGG ++ +LTAAHC QG S + + +
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQE--KSRKRCGGILVRKDFVLTAAHC-QG---SSINVTL 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HN+ ++ ++ V+
Sbjct: 55 GAHNIKEQERTQQFIPVK 72
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKA 216
E CG ++ISD +LTAAHCL + +++ L + +GKH+ ++ EK +EK
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWG 270
+H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A VTGWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKH-------NLNGVDKFEKTF 150
L + +GKH N+ + EK +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIY 85
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 21/233 (9%)
Query: 148 KTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKF 207
+ + +++ +S G + CGG +I +LTAAHC + + + +G HN+ +
Sbjct: 12 RPYMAYLEIVTSNGPSKF-CGGFLIRRNFVLTAAHC----AGRSITVTLGAHNITEEEDT 66
Query: 208 EKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN-AAASDWCVV 266
+ +V K H ++ H +DI ++K++ V + P + N C V
Sbjct: 67 WQKLEVIKQFRHPKYNTSTLH-HDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRV 125
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
GWG + S+TL+ ++++D C + + + + N+ LC G
Sbjct: 126 AGWGRTGV--LKPGSDTLQEVKLRLMDPQAC---SHFRDFDHNL---QLCVGNPRKTKSA 177
Query: 327 XXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C V G+VS+G AK P V+TR+S+Y WIN +Q
Sbjct: 178 FKGDSGGPLLCA----GVAQGIVSYGRSDAKP--PAVFTRISHYRPWINQILQ 224
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 21/233 (9%)
Query: 148 KTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKF 207
+ + +++ +S G + CGG +I +LTAAHC + + + +G HN+ +
Sbjct: 12 RPYMAYLEIVTSNGPSKF-CGGFLIRRNFVLTAAHC----AGRSITVTLGAHNITEEEDT 66
Query: 208 EKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN-AAASDWCVV 266
+ +V K H ++ H +DI ++K++ V + P + N C V
Sbjct: 67 WQKLEVIKQFRHPKYNTSTLH-HDIMLLKLKEKASLTLAVGTLPFPSQKNFVPPGRMCRV 125
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
GWG + S+TL+ ++++D C + + + + N+ LC G
Sbjct: 126 AGWGRTGV--LKPGSDTLQEVKLRLMDPQAC---SHFRDFDHNL---QLCVGNPRKTKSA 177
Query: 327 XXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C + G+VS+G AK P V+TR+S+Y WIN +Q
Sbjct: 178 FKGDSGGPLLCAGAAQ----GIVSYGRSDAKP--PAVFTRISHYQPWINQILQ 224
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 21/233 (9%)
Query: 148 KTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKF 207
+ + +++ +S G + CGG +I +LTAAHC + + + +G HN+ +
Sbjct: 12 RPYMAYLEIVTSNGPSKF-CGGFLIRRNFVLTAAHC----AGRSITVTLGAHNITEEEDT 66
Query: 208 EKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN-AAASDWCVV 266
+ +V K H ++ H +DI ++K++ V + P + N C V
Sbjct: 67 WQKLEVIKQFRHPKYNTSTLH-HDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRV 125
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
GWG + S+TL+ ++++D C + + + + N+ LC G
Sbjct: 126 AGWGRTGV--LKPGSDTLQEVKLRLMDPQAC---SHFRDFDHNL---QLCVGNPRKTKSA 177
Query: 327 XXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C V G+VS+G AK P V+TR+S+Y WIN +Q
Sbjct: 178 FKGDSGGPLLCA----GVAQGIVSYGRSDAKP--PAVFTRISHYRPWINQILQ 224
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 21/233 (9%)
Query: 148 KTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKF 207
+ + +++ +S G + CGG +I +LTAAHC + + + +G HN+ +
Sbjct: 14 RPYMAYLEIVTSNGPSKF-CGGFLIRRNFVLTAAHC----AGRSITVTLGAHNITEEEDT 68
Query: 208 EKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN-AAASDWCVV 266
+ +V K H ++ H +DI ++K++ V + P + N C V
Sbjct: 69 WQKLEVIKQFRHPKYNTSTLH-HDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRV 127
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
GWG + S+TL+ ++++D C + + + + N+ LC G
Sbjct: 128 AGWGRTGV--LKPGSDTLQEVKLRLMDPQAC---SHFRDFDHNL---QLCVGNPRKTKSA 179
Query: 327 XXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C V G+VS+G AK P V+TR+S+Y WIN +Q
Sbjct: 180 FKGDSGGPLLCA----GVAQGIVSYGRSDAKP--PAVFTRISHYRPWINQILQ 226
>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor
Length = 240
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 16/218 (7%)
Query: 164 EHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGV--DKFEKTFKVEKAVLHHR 221
+H CGG++I ++ +LTA C +G H+++G +K ++ V + V
Sbjct: 22 KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVY--- 78
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAESIDDI 280
G +D+ ++K+ + +V I +P+ + C V GWG + D +
Sbjct: 79 ----GPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGL 134
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIG 340
LR A + ++ C S G N +S +CAG PL C+
Sbjct: 135 ---LRVAHLYIMGNEKC-SQHHRGKVTLN--ESEICAGAEKIGSGPCEGDYGGPLVCEQH 188
Query: 341 GRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
++ GV+ G GCA N+PG++ RV+YY KWI+ I
Sbjct: 189 KMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKII 226
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 89 WQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNG 142
W V ++ R+ +H CGG++I ++ +LTA C +G H+++G
Sbjct: 13 WMVSLRYRN-----KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHG 61
>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 234
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 16/218 (7%)
Query: 164 EHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGV--DKFEKTFKVEKAVLHHR 221
+H CGG++I ++ +LTA C +G H+++G +K ++ V + V
Sbjct: 22 KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVY--- 78
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAESIDDI 280
G +D+ ++K+ + +V I +P+ + C V GWG + D +
Sbjct: 79 ----GPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGL 134
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIG 340
LR A + ++ C S G N +S +CAG PL C+
Sbjct: 135 ---LRVAHLYIMGNEKC-SQHHRGKVTLN--ESEICAGAEKIGSGPCEGDYGGPLVCEQH 188
Query: 341 GRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
++ GV+ G GCA N+PG++ RV+YY KWI+ I
Sbjct: 189 KMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKII 226
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 89 WQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNG 142
W V ++ R+ +H CGG++I ++ +LTA C +G H+++G
Sbjct: 13 WMVSLRYRN-----KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHG 61
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 21/233 (9%)
Query: 148 KTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKF 207
+ + +++ +S G + CGG +I +LTAAHC + + + +G HN+ +
Sbjct: 12 RPYMAYLEIVTSNGPSKF-CGGFLIRRNFVLTAAHC----AGRSITVTLGAHNITEEEDT 66
Query: 208 EKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN-AAASDWCVV 266
+ +V K H ++ H +DI ++K++ V + P + N C V
Sbjct: 67 WQKLEVIKQFRHPKYNTSTLH-HDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRV 125
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
GWG + S+TL+ ++++D C + + + + N+ LC G
Sbjct: 126 AGWGRTGV--LKPGSDTLQEVKLRLMDPQAC---SHFRDFDHNL---QLCVGNPRKTKSA 177
Query: 327 XXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C + G+VS+G AK P V+TR+S+Y WIN +Q
Sbjct: 178 FKGDSGGPLLCAGAAQ----GIVSYGRSDAKP--PAVFTRISHYQPWINQILQ 224
>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To
Atomic Resolution
pdb|1XVO|A Chain A, Trypsin From Fusarium Oxysporum At Ph 6
pdb|1FY5|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDN|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FY4|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FN8|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDQ|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
Length = 224
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 29/222 (13%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVG--KHNLNGVDKFEKTFKVEKAVLH 219
G CGG++++ +LTAAHC+ G ++S +I G G+ + +V H
Sbjct: 21 NGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRV-----H 75
Query: 220 HRFRKEGTHSNDIAVVKIR------GNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
+ ++ND+A++K+ GNI + + P ++A V GWGA +
Sbjct: 76 PSYSG---NNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSA-----TVAGWGATS 127
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
N L+ TV ++ + TCR A YG S I + M CAG +
Sbjct: 128 EGGSSTPVNLLK-VTVPIVSRATCR--AQYGTS--AITNQMFCAGVSSGGKDSCQGDSGG 182
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
P+ + L G VSWG+GCA+ N GVY V +I+
Sbjct: 183 PI---VDSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFID 221
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 77 VGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVG 136
VGGTS G +P+ V I G CGG++++ +LTAAHC+ G ++S +I G
Sbjct: 2 VGGTSASAGDFPFIVSISR-----NGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAG 56
Query: 137 K 137
Sbjct: 57 S 57
>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1PQ5|A Chain A, Trypsin At Ph 5, 0.85 A
pdb|1PQ7|A Chain A, Trypsin At 0.8 A, Ph5 BORAX
pdb|1PQ8|A Chain A, Trypsin At Ph 4 At Atomic Resolution
pdb|2G51|A Chain A, Anomalous Substructure Of Trypsin (P1)
pdb|2G52|A Chain A, Anomalous Substructure Of Trypsin (P21)
pdb|1TRY|A Chain A, Structure Of Inhibited Trypsin From Fusarium Oxysporum At
1.55 Angstroms
pdb|2VU8|E Chain E, Crystal Structure Of An Insect Inhibitor With A Fungal
Trypsin
Length = 224
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 29/222 (13%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVG--KHNLNGVDKFEKTFKVEKAVLH 219
G CGG++++ +LTAAHC+ G ++S +I G G+ + +V H
Sbjct: 21 NGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRV-----H 75
Query: 220 HRFRKEGTHSNDIAVVKIR------GNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
+ ++ND+A++K+ GNI + + P ++A V GWGA +
Sbjct: 76 PSYSG---NNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSA-----TVAGWGATS 127
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
N L+ TV ++ + TCR A YG S I + M CAG +
Sbjct: 128 EGGSSTPVNLLK-VTVPIVSRATCR--AQYGTS--AITNQMFCAGVSSGGKDSCQGDSGG 182
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
P+ + L G VSWG+GCA+ N GVY V +I+
Sbjct: 183 PI---VDSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFID 221
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGGTS G +P+ V I G CGG++++ +LTAAHC+ G ++S +I
Sbjct: 1 IVGGTSASAGDFPFIVSISR-----NGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRA 55
Query: 136 GK 137
G
Sbjct: 56 GS 57
>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution
pdb|1PQA|A Chain A, Trypsin With Pmsf At Atomic Resolution
Length = 224
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 29/222 (13%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVG--KHNLNGVDKFEKTFKVEKAVLH 219
G CGG++++ +LTAAHC+ G ++S +I G G+ + +V H
Sbjct: 21 NGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRV-----H 75
Query: 220 HRFRKEGTHSNDIAVVKIR------GNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQN 273
+ ++ND+A++K+ GNI + + P ++A V GWGA +
Sbjct: 76 PSYSG---NNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSA-----TVAGWGATS 127
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXX 333
N L+ TV ++ + TCR A YG S I + M CAG +
Sbjct: 128 EGGSSTPVNLLK-VTVPIVSRATCR--AQYGTS--AITNQMFCAGVSSGGKDSCQGDXGG 182
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
P+ + L G VSWG+GCA+ N GVY V +I+
Sbjct: 183 PI---VDSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFID 221
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGGTS G +P+ V I G CGG++++ +LTAAHC+ G ++S +I
Sbjct: 1 IVGGTSASAGDFPFIVSISR-----NGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRA 55
Query: 136 GK 137
G
Sbjct: 56 GS 57
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 17/213 (7%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
C GA+I+ +LTAAHC ++K + ++I+G H++ + ++ V+K + +
Sbjct: 26 CAGALIAKDWVLTAAHC--NLNK-RSQVILGAHSITREEPTKQIMLVKKEFPYPCY-DPA 81
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDR-DNAAASDWCVVTGWG-AQNAESIDDISNTL 284
T D+ ++++ + N+YV + +P + D+ C V GWG N+ S D TL
Sbjct: 82 TREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSD---TL 138
Query: 285 RAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFV 344
R + +ID+ C Y N N I +M+CAG L PL C+ V
Sbjct: 139 REVEITIIDRKVCNDRNHY-NFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE----GV 193
Query: 345 LSGVVSWG--DGCAKKNKPGVYTRVS-YYTKWI 374
GV S+G + C PGVY +S + WI
Sbjct: 194 FRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI 226
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ V + + T C GA+I+ +LTAAHC ++K + ++I+
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKT-----ICAGALIAKDWVLTAAHC--NLNK-RSQVIL 52
Query: 136 GKHNL 140
G H++
Sbjct: 53 GAHSI 57
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 17/213 (7%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
C GA+I+ +LTAAHC ++K + ++I+G H++ + ++ V+K + +
Sbjct: 26 CAGALIAKDWVLTAAHC--NLNK-RSQVILGAHSITREEPTKQIMLVKKEFPYPCY-DPA 81
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDR-DNAAASDWCVVTGWG-AQNAESIDDISNTL 284
T D+ ++++ + N+YV + +P + D+ C V GWG N+ S D TL
Sbjct: 82 TREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSD---TL 138
Query: 285 RAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFV 344
R + +ID+ C Y N N I +M+CAG L PL C+ V
Sbjct: 139 REVNITIIDRKVCNDRNHY-NFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE----GV 193
Query: 345 LSGVVSWG--DGCAKKNKPGVYTRVS-YYTKWI 374
GV S+G + C PGVY +S + WI
Sbjct: 194 FRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI 226
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ V + + T C GA+I+ +LTAAHC ++K + ++I+
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKT-----ICAGALIAKDWVLTAAHC--NLNK-RSQVIL 52
Query: 136 GKHNL 140
G H++
Sbjct: 53 GAHSI 57
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 102/235 (43%), Gaps = 30/235 (12%)
Query: 156 VRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE- 214
VR + E CGGA+ + ++LTAAHC+ G + G GV + + V+
Sbjct: 16 VRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNTSITATG-----GVVDLQSSSAVKV 70
Query: 215 ---KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW----CVVT 267
K + F KE T+ D A++K+ QPI P A + + V
Sbjct: 71 RSTKVLQAPGFTKE-TYGKDWALIKL---------AQPINQPTLKIATTTAYNQGTFTVA 120
Query: 268 GWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXX 327
GWGA N E L+A V + CRSS+ + + + M+CAGY
Sbjct: 121 GWGA-NREGGSQQRYLLKA-NVPFVSDAACRSSSSF----ILVANEMICAGYDTKQEDTC 174
Query: 328 XXXXXXPLACKIGG-RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQML 381
P+ K +V G+VSWG+GCA+K K GVYT VS + I + L
Sbjct: 175 QGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAARTL 229
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG 125
+VGGT G +P+ V R + E CGGA+ + ++LTAAHC+ G
Sbjct: 1 VVGGTRAAQGEFPFMV----RLINEENEGFCGGALYAQDIVLTAAHCVSG 46
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 160 TGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLH 219
T H CGG ++ + +LTAAHCL S + + +G HN+ ++ ++ V + + H
Sbjct: 22 TSGKSHICGGFLVREDFVLTAAHCL----GSSINVTLGAHNIMERERTQQVIPVRRPIPH 77
Query: 220 HRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASD--WCVVTGWG--AQNAE 275
+ E T +NDI ++K+ + V PI +P R A C V GWG N
Sbjct: 78 PDYNDE-TLANDIMLLKLTRKADITDKVSPINLP-RSLAEVKPGMMCSVAGWGRLGVNMP 135
Query: 276 SIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPL 335
S D L+ ++V + C A + N I + +CAG + PL
Sbjct: 136 STD----KLQEVDLEVQSEEKC--IARFKNY---IPFTQICAGDPSKRKNSFSGDSGGPL 186
Query: 336 ACKIGGRFVLSGVVSWG--DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
C V G+VS+G DG P VYTR+S + WI+ ++
Sbjct: 187 VCN----GVAQGIVSYGRNDGTT----PDVYTRISSFLSWIHSTMR 224
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ + ++S H CGG ++ + +LTAAHCL S + + +
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKS--HICGGFLVREDFVLTAAHCL----GSSINVTL 54
Query: 136 GKHNLNGVDKFEKTFKV 152
G HN+ ++ ++ V
Sbjct: 55 GAHNIMERERTQQVIPV 71
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 49/258 (18%)
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLR 193
IVG H + + +Q+R + G H CGG +I + +LTAAHCL+ I + +
Sbjct: 1 IVGGHE---AQPHSRPYMASLQMRGNPG--SHFCGGTLIHPSFVLTAAHCLRDIPQRLVN 55
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP 253
+++G HN+ + ++ F V + L++ + E NDI ++++ + V + +P
Sbjct: 56 VVLGAHNVRTQEPTQQHFSVAQVFLNN-YDAENK-LNDILLIQLSSPANLSASVATVQLP 113
Query: 254 DRDNAAA-SDWCVVTGWGAQNAESIDDISNTLRAATVKVI-----DQNTC------RSSA 301
+D C+ GWG A D + L+ V V+ N C ++
Sbjct: 114 QQDQPVPHGTQCLAMGWGRVGAH--DPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGI 171
Query: 302 VYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKP 361
+G+S ++C G + + V W GCA + P
Sbjct: 172 CFGDSG----GPLICDGIIQG----------------------IDSFVIW--GCATRLFP 203
Query: 362 GVYTRVSYYTKWINDRIQ 379
+TRV+ Y WI ++
Sbjct: 204 DFFTRVALYVDWIRSTLR 221
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+ +Q+R + G H CGG +I + +LTAAHCL+ I + + +++
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPG--SHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVL 58
Query: 136 GKHNLNGVDKFEKTFKV 152
G HN+ + ++ F V
Sbjct: 59 GAHNVRTQEPTQQHFSV 75
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 168 GGAIISDTVILTAAHCL-----QGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
GGA++ D ILTAAH L + S + L + +G N+ + K + + +H +
Sbjct: 114 GGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL-GNHPIRRVSVHPDY 172
Query: 223 RKEGTHS--NDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC-VVTGWGAQNAESIDD 279
R++ +++ DIA++++ ++ + PIC+PD D V+G+G +
Sbjct: 173 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME----EK 228
Query: 280 ISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKI 339
I++ LR + V + C + N +M CAG+ + A +
Sbjct: 229 IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRD 288
Query: 340 GG--RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
R+V +G+VSWG GC++ G YT+V Y WI ++
Sbjct: 289 PNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIKKEME 328
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 55 RAMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDT 114
R + + VN QR +I+GG G +PWQV + G+G GGA++ D
Sbjct: 72 RCLPVCGKPVNPVEQRQ---RIIGGQKAKMGNFPWQVFTNIH---GRG----GGALLGDR 121
Query: 115 VILTAAHCL-----QGISKSKLRIIVGKHNLNGVDKF 146
ILTAAH L + S + L + +G N+ + K
Sbjct: 122 WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL 158
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 168 GGAIISDTVILTAAHCL-----QGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
GGA++ D ILTAAH L + S + L + +G N+ + K + + +H +
Sbjct: 25 GGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL-GNHPIRRVSVHPDY 83
Query: 223 RKEGTHS--NDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC-VVTGWGAQNAESIDD 279
R++ +++ DIA++++ ++ + PIC+PD D V+G+G +
Sbjct: 84 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME----EK 139
Query: 280 ISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKI 339
I++ LR + V + C + N +M CAG+ + A +
Sbjct: 140 IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRD 199
Query: 340 GG--RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
R+V +G+VSWG GC++ G YT+V Y WI ++
Sbjct: 200 PNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIKKEME 239
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL-----QGISKSK 130
I+GG G +PWQV + G+G GGA++ D ILTAAH L + S +
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIH---GRG----GGALLGDRWILTAAHTLYPKEHEAQSNAS 53
Query: 131 LRIIVGKHNLNGVDKF 146
L + +G N+ + K
Sbjct: 54 LDVFLGHTNVEELMKL 69
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 168 GGAIISDTVILTAAHCL-----QGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
GGA++ D ILTAAH L + S + L + +G N+ + K + + +H +
Sbjct: 114 GGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL-GNHPIRRVSVHPDY 172
Query: 223 RKEGTHS--NDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC-VVTGWGAQNAESIDD 279
R++ +++ DIA++++ ++ + PIC+PD D V+G+G +
Sbjct: 173 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME----EK 228
Query: 280 ISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKI 339
I++ LR + V + C + N +M CAG+ + A +
Sbjct: 229 IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAGGVFAVRD 288
Query: 340 GG--RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
R+V +G+VSWG GC++ G YT+V Y WI ++
Sbjct: 289 PNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIKKEME 328
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 55 RAMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDT 114
R + + VN QR +I+GG G +PWQV + G+G GGA++ D
Sbjct: 72 RCLPVCGKPVNPVEQRQ---RIIGGQKAKMGNFPWQVFTNIH---GRG----GGALLGDR 121
Query: 115 VILTAAHCL-----QGISKSKLRIIVGKHNLNGVDKF 146
ILTAAH L + S + L + +G N+ + K
Sbjct: 122 WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL 158
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 168 GGAIISDTVILTAAHCL-----QGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
GGA++ D ILTAAH L + S + L + +G N+ + K + + +H +
Sbjct: 182 GGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL-GNHPIRRVSVHPDY 240
Query: 223 RKEGTHS--NDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC-VVTGWGAQNAESIDD 279
R++ +++ DIA++++ ++ + PIC+PD D V+G+G +
Sbjct: 241 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME----EK 296
Query: 280 ISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKI 339
I++ LR + V + C + N +M CAG+ + A +
Sbjct: 297 IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRD 356
Query: 340 GG--RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
R+V +G+VSWG GC++ G YT+V Y WI ++
Sbjct: 357 PNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIKKEME 396
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 55 RAMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDT 114
R + + VN QR +I+GG G +PWQV + G+G GGA++ D
Sbjct: 140 RCLPVCGKPVNPVEQRQ---QIIGGQKAKMGNFPWQVFTNIH---GRG----GGALLGDR 189
Query: 115 VILTAAHCL-----QGISKSKLRIIVGKHNLNGVDKF 146
ILTAAH L + S + L + +G N+ + K
Sbjct: 190 WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL 226
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 98/224 (43%), Gaps = 30/224 (13%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE----KAVLHHRF 222
CGGA+ + ++LTAAHC+ G + G GV + + V+ K + F
Sbjct: 22 CGGALYAQDIVLTAAHCVSGSGNNTSITATG-----GVVDLQSSSAVKVRSTKVLQAPGF 76
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW----CVVTGWGAQNAESID 278
KE T+ D A++K+ QPI P A + + V GWGA N E
Sbjct: 77 TKE-TYGKDWALIKL---------AQPINQPTLKIATTTAYNQGTFTVAGWGA-NREGGS 125
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK 338
L+A V + CRSS+ + + + M+CAGY P+ K
Sbjct: 126 QQRYLLKA-NVPFVSDAACRSSSSF----ILVANEMICAGYDTKQEDTCQGDSGGPMFRK 180
Query: 339 IGG-RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQML 381
+V G+VSWG+GCA+K K GVYT VS + I + L
Sbjct: 181 DNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAARTL 224
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG 125
+VGGT G +P+ V + + CGGA+ + ++LTAAHC+ G
Sbjct: 1 VVGGTRAAQGEFPFMVRLSM---------GCGGALYAQDIVLTAAHCVSG 41
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 46/255 (18%)
Query: 133 IIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKL 192
II G G+ ++ + +Q Q CGG++I + ILTAAHC+ +
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQ-----DQRRVWCGGSLIDNKWILTAAHCVH----DAV 51
Query: 193 RIIVGKHNLNGVDKFEKTFKV--EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPI 250
++V L ++E V E+ + H F + T+ ND+A++KI ++E+ +QPI
Sbjct: 52 SVVV---YLGSAVQYEGEAVVNSERIISHSMFNPD-TYLNDVALIKIP-HVEYTDNIQPI 106
Query: 251 CIP---DRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSN 307
+P + +N + W V+GWG N +++ L+ VID + C G
Sbjct: 107 RLPSGEELNNKFENIWATVSGWGQSNTDTV-----ILQYTYNLVIDNDRCAQEYPPG--- 158
Query: 308 QNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLS------GVVSW--GDGCAKKN 359
I++S +C P GG FVLS GVVS+ G GC +
Sbjct: 159 -IIVESTICG---------DTSDGKSPCFGDSGGPFVLSDKNLLIGVVSFVSGAGC-ESG 207
Query: 360 KPGVYTRVSYYTKWI 374
KP ++RV+ Y WI
Sbjct: 208 KPVGFSRVTSYMDWI 222
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQ 124
I+ G G +P+Q + + + Q CGG++I + ILTAAHC+
Sbjct: 1 IINGYEAYTGLFPYQAGLDI-TLQDQRRVWCGGSLIDNKWILTAAHCVH 48
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
Query: 164 EHQCGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHNLNGVD-KFEKTFKVEKA 216
E CG ++ISD +LTAAHCL + + L + +GKH+ + K EK ++K
Sbjct: 25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKI 84
Query: 217 VLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGWG 270
+H R+ + DIA++K++ IE + Y+ P+C+PD+ AA A VTGWG
Sbjct: 85 YIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 142
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 26/228 (11%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
Q EH CGG ++ +LTAAHC + + +GK+ L + + V K+ H
Sbjct: 21 QKEHICGGVLLDRNWVLTAAHCYV----DQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPG 76
Query: 222 FRKE----------GTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGA 271
F S+D+ ++++ + V+PI +P ++ S C+ +GWG+
Sbjct: 77 FNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSK-CLASGWGS 135
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ L+ + ++ C + VY Q + D MLCAG +
Sbjct: 136 ITPTRWQK-PDDLQCVFITLLPNENC--AKVY---LQKVTDVMLCAGEMGGGKDTCRDDS 189
Query: 332 XXPLACKIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRI 378
PL C +L G S+G C K P +YT + + WI D +
Sbjct: 190 GGPLICD----GILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHC 122
+VGG + + PWQV + Q EH CGG ++ +LTAAHC
Sbjct: 1 VVGGFNCEKNSQPWQVAVYY-----QKEHICGGVLLDRNWVLTAAHC 42
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 21/262 (8%)
Query: 124 QGISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHC 183
Q S+ R++ G+ + + +++V +Q G H CGG++I+ ++TA HC
Sbjct: 3 QPFSRPSSRVVNGEDAV----PYSWSWQVSLQYEKD-GAFHHTCGGSLIAPDWVVTAGHC 57
Query: 184 LQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL--HHRFRKEGTH-SNDIAVVKIRGN 240
+ + ++++G+++ + + E+ + L H + NDIA+VK+ +
Sbjct: 58 IS--TSRTYQVVLGEYDRSVLQGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRS 115
Query: 241 IEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRS 299
+ VQ +P + ++ C ++GWG + + + L+ A + V+D C
Sbjct: 116 AQLGDKVQLANLPPAGDILPNEAPCYISGWG--RLYTGGPLPDKLQEALLPVVDYEHCSQ 173
Query: 300 SAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIG-GRFVLSGVVSW--GDGCA 356
+G + + +M+CAG PL C G + + GV S+ GC
Sbjct: 174 YDWWGIT---VKKTMVCAG--GDTRSGCDGDSGGPLNCPAADGSWQVHGVTSFVSAFGCN 228
Query: 357 KKNKPGVYTRVSYYTKWINDRI 378
KP V+TRVS + WIN+ I
Sbjct: 229 TIKKPTVFTRVSAFIDWINETI 250
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 70 RAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKS 129
R ++ + G + PY ++ WQV +Q G H CGG++I+ ++TA HC+ +
Sbjct: 7 RPSSRVVNGEDAVPY-SWSWQVSLQYEKD-GAFHHTCGGSLIAPDWVVTAGHCIS--TSR 62
Query: 130 KLRIIVGKHNLNGVDKFEKTFKV 152
++++G+++ + + E+ +
Sbjct: 63 TYQVVLGEYDRSVLQGSEQVIPI 85
>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (tsv-pa) From Snake Venom
Length = 234
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 15/213 (7%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CGG +I+ ++TAAHC + +++ G H+ +++ E+T ++ +K+
Sbjct: 26 CGGTLINQDWVVTAAHC----DSNNFQLLFGVHSKKILNEDEQTRDPKEKFFCPNRKKDD 81
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTLRA 286
DI ++K+ ++ ++++ P+ +P + S C + GWG + + + +
Sbjct: 82 EVDKDIMLIKLDSSVSNSEHIAPLSLPSSPPSVGSV-CRIMGWG-KTIPTKEIYPDVPHC 139
Query: 287 ATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLS 346
A + ++D CR++ + + + ++ LCAG L PL C +
Sbjct: 140 ANINILDHAVCRTAYSW----RQVANTTLCAGILQGGRDTCHFDSGGPLIC----NGIFQ 191
Query: 347 GVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRI 378
G+VSWG C + +PGVYT+V Y WI I
Sbjct: 192 GIVSWGGHPCGQPGEPGVYTKVFDYLDWIKSII 224
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 102/241 (42%), Gaps = 31/241 (12%)
Query: 151 KVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT 210
+ VR + E CGGA+ + ++LTAAHC+ G + G GV + +
Sbjct: 11 EFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNTSITATG-----GVVDLQSS 65
Query: 211 FKVE----KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW--- 263
V+ K + F KE T+ D A++K+ QPI P A + +
Sbjct: 66 SAVKVRSTKVLQAPGFTKE-TYGKDWALIKL---------AQPINQPTLKIATTTAYNQG 115
Query: 264 -CVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNX 322
V GWGA N E L+A V + CRSS+ + + + M+CAGY +
Sbjct: 116 TFTVAGWGA-NREGGSQQRYLLKA-NVPFVSDAACRSSSSF----ILVANEMICAGYPDT 169
Query: 323 XXXXX-XXXXXXPLACKIGG-RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
P+ K ++ G+VSWG GCA+ PGVYT VS + I +
Sbjct: 170 GGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAART 229
Query: 381 L 381
L
Sbjct: 230 L 230
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG 125
+VGGT G +P+ V R + E CGGA+ + ++LTAAHC+ G
Sbjct: 1 VVGGTRAAQGEFPFMV----RLINEENEGFCGGALYAQDIVLTAAHCVSG 46
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CG +I+ ++TAAHC + ++ +G H+ +++ E+T ++ +
Sbjct: 25 CGLTLINQEWVVTAAHC----DSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNMSE 80
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNA--ESIDDISNTL 284
DI ++K+ I ++++ P+ +P + S C + GWG+ E+ D+
Sbjct: 81 VLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSVGS-VCRIMGWGSITIPNETYPDVP--- 136
Query: 285 RAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFV 344
A + ++D C+ G N + LCAG L PL C G+F
Sbjct: 137 YCANINLVDYEVCQ-----GAYNGLPAKTTLCAGVLEGGKDTCVGDSGGPLICN--GQF- 188
Query: 345 LSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRI 378
G+VS+G C + KPG+YT V YT WI I
Sbjct: 189 -QGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNI 222
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 147 EKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKH--NLNGV 204
E F V + +S+ C GA+I+ +LTAAHC + +RI +G H N+
Sbjct: 11 EHPFLVALYTSASS---TIHCAGALINREWVLTAAHC----DRRNIRIKLGMHSKNIRNE 63
Query: 205 DKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWC 264
D+ + + + L+ +F DI ++++R + ++ ++ P+ +P R S C
Sbjct: 64 DEQIRVPRGKYFCLNTKF--PNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSR-C 120
Query: 265 VVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXX 324
+ GWG + + D+ + + ++ C + ++ LCAG L
Sbjct: 121 RIMGWGKISTTTYPDVPH---CTNIFIVKHKWCEPLYPWVPADSR----TLCAGILKGGR 173
Query: 325 XXXXXXXXXPLACKIGGRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRI 378
PL C + G+V+ G + C + KP VYT+V Y WI I
Sbjct: 174 DTCHGDSGGPLICN----GEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSII 224
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 22/217 (10%)
Query: 166 QCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKE 225
+CGG +I D +LTAAHC S + + +G HN+ + ++ V++ + H + +
Sbjct: 28 RCGGFLIQDDFVLTAAHCW----GSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPK 83
Query: 226 GTHSNDIAVVKIRGNIEFNQYVQPICIP-DRDNAAASDWCVVTGWGAQNAESIDDISNTL 284
SNDI ++++ + + VQP+ +P ++ C V GWG + S+TL
Sbjct: 84 -NFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWG--QTAPLGKHSHTL 140
Query: 285 RAATVKVIDQNTCRSSAVYGNSNQNILDSM--LCAGYLNXXXXXXXXXXXXPLACKIGGR 342
+ + V + C S ++ DS LC G PL C
Sbjct: 141 QEVKMTVQEDRKCESDL------RHYYDSTIELCVGDPEIKKTSFKGDSGGPLVCNK--- 191
Query: 343 FVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
V G+VS+G P T+VS + WI ++
Sbjct: 192 -VAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTMK 225
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ + + + +CGG +I D +LTAAHC S + + +
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQ--KSLKRCGGFLIQDDFVLTAAHCW----GSSINVTL 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HN+ + ++ V+
Sbjct: 55 GAHNIKEQEPTQQFIPVK 72
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 22/217 (10%)
Query: 166 QCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKE 225
+CGG +I D +LTAAHC S + + +G HN+ + ++ V++ + H + +
Sbjct: 28 RCGGFLIRDDFVLTAAHCW----GSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPK 83
Query: 226 GTHSNDIAVVKIRGNIEFNQYVQPICIP-DRDNAAASDWCVVTGWGAQNAESIDDISNTL 284
SNDI ++++ + + VQP+ +P ++ C V GWG + S+TL
Sbjct: 84 -NFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWG--QTAPLGKHSHTL 140
Query: 285 RAATVKVIDQNTCRSSAVYGNSNQNILDSM--LCAGYLNXXXXXXXXXXXXPLACKIGGR 342
+ + V + C S ++ DS LC G PL C
Sbjct: 141 QEVKMTVQEDRKCESDL------RHYYDSTIELCVGDPEIKKTSFKGDSGGPLVCNK--- 191
Query: 343 FVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
V G+VS+G P T+VS + WI ++
Sbjct: 192 -VAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTMK 225
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ + + + +CGG +I D +LTAAHC S + + +
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQ--KSLKRCGGFLIRDDFVLTAAHCW----GSSINVTL 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HN+ + ++ V+
Sbjct: 55 GAHNIKEQEPTQQFIPVK 72
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 112/246 (45%), Gaps = 17/246 (6%)
Query: 141 NGVDKFEKTFKVEIQVR-SSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKH 199
NG D ++ ++ ++ G H CGG++I+ ++TA HC+ + ++++G++
Sbjct: 1 NGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS--TSRTYQVVLGEY 58
Query: 200 NLNGVDKFEKTFKVEKAVL--HHRFRKEGTH-SNDIAVVKIRGNIEFNQYVQPICIPDRD 256
+ + ++ E+ + L H + NDIA+VK+ + + VQ +P
Sbjct: 59 DRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAG 118
Query: 257 NAAASDW-CVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSML 315
+ ++ C ++GWG + + + L+ A + +D C +G + + +M+
Sbjct: 119 DILPNEAPCYISGWG--RLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGIT---VKKTMV 173
Query: 316 CAGYLNXXXXXXXXXXXXPLACKIG-GRFVLSGVVSW--GDGCAKKNKPGVYTRVSYYTK 372
CAG PL C G + + GV S+ GC KP V+TRVS +
Sbjct: 174 CAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFID 231
Query: 373 WINDRI 378
WI++ I
Sbjct: 232 WIDETI 237
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 78 GGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGK 137
G + PY ++ WQV +Q G H CGG++I+ ++TA HC+ + ++++G+
Sbjct: 2 GEDAVPY-SWSWQVSLQYEKD-GAFHHTCGGSLIAPDWVVTAGHCIS--TSRTYQVVLGE 57
Query: 138 HNLNGVDKFEKTFKV 152
++ + ++ E+ +
Sbjct: 58 YDRSVLEGSEQVIPI 72
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 153 EIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFK 212
I + S G H CGG++I+ +++AAHC KS++++ +G+HN++ ++ E+
Sbjct: 11 SIPYQVSLNSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNIDVLEGNEQFIN 66
Query: 213 VEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG 270
K + H F T NDI ++K+ N V + +P R AAA C+++GWG
Sbjct: 67 AAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWG 122
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 13/80 (16%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + + P+QV + G H CGG++I+ +++AAHC KS++++ +
Sbjct: 1 IVGGYTCAANSIPYQVSLN------SGSHFCGGSLINSQWVVSAAHCY----KSRIQVRL 50
Query: 136 GKHN---LNGVDKFEKTFKV 152
G+HN L G ++F K+
Sbjct: 51 GEHNIDVLEGNEQFINAAKI 70
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 22/229 (9%)
Query: 148 KTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKF 207
+ + +Q++S GQ +CGG ++ + +LTAAHC S + + +G HN+ +
Sbjct: 12 RPYMAYLQIQSPAGQS--RCGGFLVREDFVLTAAHCW----GSNINVTLGAHNIQRRENT 65
Query: 208 EKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNAAASDWCVV 266
++ +A+ H ++ + T NDI ++++ + N+ V P+ +P ++ C V
Sbjct: 66 QQHITARRAIRHPQYNQR-TIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTV 124
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
GWG S+ ++TLR ++V C ++G+ + +C G
Sbjct: 125 AGWG---RVSMRRGTDTLREVQLRVQRDRQC--LRIFGSYDPR---RQICVGDRRERKAA 176
Query: 327 XXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
PL C V G+VS+G P V+TRVS + WI
Sbjct: 177 FKGDSGGPLLCN----NVAHGIVSYGKSSGV--PPEVFTRVSSFLPWIR 219
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + + P+ +Q++S GQ +CGG ++ + +LTAAHC S + + +
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQS--RCGGFLVREDFVLTAAHCW----GSNINVTL 54
Query: 136 GKHNLN 141
G HN+
Sbjct: 55 GAHNIQ 60
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 22/228 (9%)
Query: 148 KTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKF 207
+ + +Q++S GQ +CGG ++ + +LTAAHC S + + +G HN+ +
Sbjct: 12 RPYMAYLQIQSPAGQS--RCGGFLVREDFVLTAAHCW----GSNINVTLGAHNIQRRENT 65
Query: 208 EKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNAAASDWCVV 266
++ +A+ H ++ + T NDI ++++ + N+ V P+ +P ++ C V
Sbjct: 66 QQHITARRAIRHPQYNQR-TIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTV 124
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXX 326
GWG S+ ++TLR ++V C ++G+ + +C G
Sbjct: 125 AGWG---RVSMRRGTDTLREVQLRVQRDRQC--LRIFGSYDPR---RQICVGDRRERKAA 176
Query: 327 XXXXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C V G+VS+G + P V+TRVS + WI
Sbjct: 177 FKGDSGGPLLCN----NVAHGIVSYGK--SSGVPPEVFTRVSSFLPWI 218
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + + P+ +Q++S GQ +CGG ++ + +LTAAHC S + + +
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQS--RCGGFLVREDFVLTAAHCW----GSNINVTL 54
Query: 136 GKHNLNGVDKFEKTFKVEIQVR 157
G HN+ + ++ +R
Sbjct: 55 GAHNIQRRENTQQHITARRAIR 76
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 95/222 (42%), Gaps = 28/222 (12%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT--FKVEKAVLHHRFRK 224
CGGA+ + ++LTAAHC+ G + G GV + + KV +
Sbjct: 22 CGGALYAQDIVLTAAHCVSGSGNNTSITATG-----GVVDLQSSSAVKVRSTKVLQAPGY 76
Query: 225 EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW----CVVTGWGAQNAESIDDI 280
GT D A++K+ QPI P A + + V GWGA N E
Sbjct: 77 NGT-GKDWALIKL---------AQPINQPTLKIATTTAYNQGTFTVAGWGA-NREGGSQQ 125
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIG 340
L+A V + CRS+ YGN + + + +CAGY P+ K
Sbjct: 126 RYLLKA-NVPFVSDAACRSA--YGN--ELVANEEICAGYDTGGVDTCQGDSGGPMFRKDN 180
Query: 341 G-RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQML 381
++ G+VSWG+GCA+K K GVYT VS + I + L
Sbjct: 181 ADEWIQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAARTL 222
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG 125
+VGGT G +P+ V + + CGGA+ + ++LTAAHC+ G
Sbjct: 1 VVGGTRAAQGEFPFMVRLSM---------GCGGALYAQDIVLTAAHCVSG 41
>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP
Length = 234
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 20/224 (8%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQG--ISKSKLRIIVGK--HNLNGVDKFEKTFKVEKAV 217
QG+H CGG+++ + ILTA C + + + +G N + + V K V
Sbjct: 19 QGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMV 78
Query: 218 LHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAES 276
G + + ++K+ ++ NQ V IC+P C + GWG
Sbjct: 79 C-------GPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTG 131
Query: 277 IDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLA 336
D + N A + VI C + +S +C L PLA
Sbjct: 132 NDTVLNV---ALLNVISNQECNI-----KHRGRVRESEMCTEGLLAPVGACEGDYGGPLA 183
Query: 337 CKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
C +VL G++ CA+ P V+TRVS + WI+ +++
Sbjct: 184 CFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRL 227
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL 123
+VGG G PW V ++ R QG+H CGG+++ + ILTA C
Sbjct: 1 VVGGHP---GNSPWTVSLRNR----QGQHFCGGSLVKEQWILTARQCF 41
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 135/343 (39%), Gaps = 55/343 (16%)
Query: 68 PQRAANVKIVGGTSTPYGA---YPWQVEIQVRSSTGQGEHQCGG--AIISDTVILTAAHC 122
P+ N K+ ST +G+ Y + + G GE+ C G + +++ + C
Sbjct: 7 PESIENGKVEDPESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNEVLGPELPKC 66
Query: 123 LQGISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAH 182
+ + + + G D K F ++ + GGA+I++ +LTAAH
Sbjct: 67 VPVCGVPREPFEEKQRIIGGSDADIKNFPWQVFFDNP------WAGGALINEYWVLTAAH 120
Query: 183 CLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFR----KEG--THSNDIAVVK 236
++G + + + + + K K E +H ++ EG NDIA+V+
Sbjct: 121 VVEGNREPTMYVGSTSVQTSRLAK-SKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVR 179
Query: 237 IRGNIEFNQYVQPICIPDRD---NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVID 293
++ ++ V PIC+P N D +++GWG D + L+AA + V
Sbjct: 180 LKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKR---DRAVRLKAARLPVAP 236
Query: 294 QNTCRSSAVYGNSNQN----ILDSMLCAGYLNXXXXXXXXXXXXPLACK--IGG------ 341
C+ V + +M+CAG +CK GG
Sbjct: 237 LRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMD-----------SCKGDSGGAFAVQD 285
Query: 342 -----RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+F +G+VSWG C G+YTRV Y WI +Q
Sbjct: 286 PNDKTKFYAAGLVSWGPQCGTY---GLYTRVKNYVDWIMKTMQ 325
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 31/218 (14%)
Query: 165 HQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRK 224
+ CGG++IS ILTAAHC+ G + +++G HN+ + + T + +H +
Sbjct: 24 YFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAHNIREDEATQVTIQSTDFTVHENYNS 81
Query: 225 EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTL 284
SNDIAV+++ + + + +P D + TGWG + ++ IS+ L
Sbjct: 82 F-VISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGT-VVTPTGWGLPSDSAL-GISDVL 138
Query: 285 RAATVKVIDQNTCRSSAVYG-NSNQNI-LDSMLCAGYLNXXXXXXXXXXXXPLACKIGGR 342
R V ++ C AVYG ++ NI +DS G N GG
Sbjct: 139 RQVDVPIMSNADC--DAVYGIVTDGNICIDSTGGKGTCNGDS---------------GGP 181
Query: 343 F----VLSGVVSWG--DGCAKKNKPGVYTRVSYYTKWI 374
+ G+ S+G GC + P +TRV+Y+ WI
Sbjct: 182 LNYNGLTYGITSFGAAAGC-EAGYPDAFTRVTYFLDWI 218
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG ++P Q + + + CGG++IS ILTAAHC+ G + +++
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDD-----MYFCGGSLISPEWILTAAHCMDG--AGFVDVVL 53
Query: 136 GKHNLNGVDKFEKTFKVEIQ 155
G HN+ + ++ +V IQ
Sbjct: 54 GAHNI----REDEATQVTIQ 69
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 18/227 (7%)
Query: 163 GEHQCGGAIISDTVILTAAHCL--QGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
G GA++ D +LTAAH + Q S L I +G L + E +H
Sbjct: 20 GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMG--TLKRLSPHYTQAWSEAVFIHE 77
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA---ASDWCVVTGWGAQNAESI 277
+ + NDIA++K+ + N + PIC+P ++ + D +GWG
Sbjct: 78 GYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGF- 136
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQ---NILDSMLCAGYLNXXXXXXXXXXXXP 334
++ L + ++D C +A Y ++ +MLCAG +
Sbjct: 137 --LARNLMYVDIPIVDHQKC--TAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGA 192
Query: 335 LAC--KIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRI 378
L R+ + G+VSWG C + + GVYT+V Y WI + I
Sbjct: 193 LVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL--QGISKSKLRI 133
I GG G +PWQV I G GA++ D +LTAAH + Q S L I
Sbjct: 1 IYGGQKAKPGDFPWQVLI-------LGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDI 53
Query: 134 IVG 136
+G
Sbjct: 54 RMG 56
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 18/227 (7%)
Query: 163 GEHQCGGAIISDTVILTAAHCL--QGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
G GA++ D +LTAAH + Q S L I +G L + E +H
Sbjct: 20 GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMG--TLKRLSPHYTQAWSEAVFIHE 77
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA---ASDWCVVTGWGAQNAESI 277
+ + NDIA++K+ + N + PIC+P ++ + D +GWG
Sbjct: 78 GYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGF- 136
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQ---NILDSMLCAGYLNXXXXXXXXXXXXP 334
++ L + ++D C +A Y ++ +MLCAG +
Sbjct: 137 --LARNLMYVDIPIVDHQKC--TAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGA 192
Query: 335 LAC--KIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRI 378
L R+ + G+VSWG C + + GVYT+V Y WI + I
Sbjct: 193 LVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL--QGISKSKLRI 133
I GG G +PWQV I G GA++ D +LTAAH + Q S L I
Sbjct: 1 IYGGQKAKPGDFPWQVLI-------LGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDI 53
Query: 134 IVG 136
+G
Sbjct: 54 RMG 56
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 18/227 (7%)
Query: 163 GEHQCGGAIISDTVILTAAHCL--QGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
G GA++ D +LTAAH + Q S L I +G L + E +H
Sbjct: 106 GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMG--TLKRLSPHYTQAWSEAVFIHE 163
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA---ASDWCVVTGWGAQNAESI 277
+ + NDIA++K+ + N + PIC+P ++ + D +GWG
Sbjct: 164 GYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGF- 222
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQ---NILDSMLCAGYLNXXXXXXXXXXXXP 334
++ L + ++D C +A Y ++ +MLCAG +
Sbjct: 223 --LARNLMYVDIPIVDHQKC--TAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGA 278
Query: 335 LAC--KIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRI 378
L R+ + G+VSWG C + + GVYT+V Y WI + I
Sbjct: 279 LVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 325
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 70 RAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL--QGIS 127
R +I GG G +PWQV I G GA++ D +LTAAH + Q
Sbjct: 81 RTTGGRIYGGQKAKPGDFPWQVLI-------LGGTTAAGALLYDNWVLTAAHAVYEQKHD 133
Query: 128 KSKLRIIVG 136
S L I +G
Sbjct: 134 ASALDIRMG 142
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 18/221 (8%)
Query: 169 GAIISDTVILTAAHCL--QGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
GA++ D +LTAAH + Q S L I +G L + E +H + +
Sbjct: 187 GALLYDNWVLTAAHAVYEQKHDASALDIRMG--TLKRLSPHYTQAWSEAVFIHEGYTHDA 244
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA---ASDWCVVTGWGAQNAESIDDISNT 283
NDIA++K+ + N + PIC+P ++ + D +GWG ++
Sbjct: 245 GFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGF---LARN 301
Query: 284 LRAATVKVIDQNTCRSSAVYGNSNQ---NILDSMLCAGYLNXXXXXXXXXXXXPLAC--K 338
L + ++D C +A Y ++ +MLCAG + L
Sbjct: 302 LMYVDIPIVDHQKC--TAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDS 359
Query: 339 IGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRI 378
R+ + G+VSWG C + + GVYT+V Y WI + I
Sbjct: 360 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 400
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 70 RAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL--QGIS 127
R +I GG G +PWQV I G GA++ D +LTAAH + Q
Sbjct: 156 RTTGGQIYGGQKAKPGDFPWQVLI-------LGGTTAAGALLYDNWVLTAAHAVYEQKHD 208
Query: 128 KSKLRIIVG 136
S L I +G
Sbjct: 209 ASALDIRMG 217
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 20/210 (9%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
C G +I ++TAAHC + + +++G HN + + +VEK H ++ +
Sbjct: 30 CSGFLIRRNFVMTAAHC----AGRSITVLLGAHNKKVKEDTWQKLEVEKQFPHPKY-DDR 84
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQNAESIDDISNTLR 285
NDI ++K++ V + I + N+ C GWG N + S+TL+
Sbjct: 85 LVLNDIMLLKLKEKANLTLGVGTLPISAKSNSIPPGRVCRAVGWGRTNVN--EPPSDTLQ 142
Query: 286 AATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVL 345
++++D C+ + Q LC G PL C +
Sbjct: 143 EVKMRILDPQACKHFEDFHQEPQ------LCVGNPKKIRNVYKGDSGGPLLCA----GIA 192
Query: 346 SGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
G+ S+ AK P V+TR+S+Y WIN
Sbjct: 193 QGIASYVLRNAKP--PSVFTRISHYRPWIN 220
>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal
Plasma
Length = 237
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 26/229 (11%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
QG QCGG ++ +LTAAHC+ +I +G+HNL+ + + +V + L +
Sbjct: 21 QGHFQCGGVLVHPQWVLTAAHCM----SDDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQ 76
Query: 222 F----------RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGA 271
F R S+D+ ++++ V+ + +P ++ S C +GWG
Sbjct: 77 FDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGST-CYTSGWGL 135
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXX 331
+ + + S TL+ +++ C + + + + +LCA + +
Sbjct: 136 ISTFT-NRGSGTLQCVELRLQSNEKCARAY-----PEKMTEFVLCATHRDDSGSICLGDS 189
Query: 332 XXPLACKIGGRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
L C V G+ SWG CA N V+T+V + KWI + I+
Sbjct: 190 GGALICD----GVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 13/213 (6%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CGG +I+ +LTAAHC + RI +G H+ ++ E+T ++ +
Sbjct: 28 CGGTLINQEWVLTAAHC----DRKNFRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYT 83
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTLRA 286
DI ++++ ++ ++++ P +P + S C + GWG + + + +
Sbjct: 84 LWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSVGSV-CRIMGWG-RISPTEGTYPDVPHC 141
Query: 287 ATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLS 346
+ +++ CR A Y LCAG L PL C G+F
Sbjct: 142 VNINLLEYEMCR--APYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICN--GQF--Q 195
Query: 347 GVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRI 378
G+ SWGD CA+ +KP YT+V + WI + I
Sbjct: 196 GIASWGDDPCAQPHKPAAYTKVFDHLDWIENII 228
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 106 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT 149
CGG +I+ +LTAAHC + RI +G H+ ++ E+T
Sbjct: 28 CGGTLINQEWVLTAAHC----DRKNFRIKLGMHSKKVPNEDEQT 67
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKH 199
+NG + ++ ++ ++ TG H CGG++I++ ++TAAHC G++ S + ++ G+
Sbjct: 2 VNGEEAVPGSWPWQVSLQDKTG--FHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEF 56
Query: 200 NLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNA 258
+ + + K+ K + ++ T +NDI ++K+ F+Q V +C+P D+
Sbjct: 57 DQGSSSEKIQKLKIAKVFKNSKYNSL-TINNDITLLKLSTAASFSQTVSAVCLPSASDDF 115
Query: 259 AASDWCVVTGWG 270
AA CV TGWG
Sbjct: 116 AAGTTCVTTGWG 127
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 24/216 (11%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK-TFKVEKAVLHH 220
QG H+CGGA+I ++TAA C Q + +++G ++L ++ + TF + +
Sbjct: 21 QGSHECGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISS--MSE 78
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDD 279
+ ND+ ++++ V + +P ++ A C V GWG+Q S
Sbjct: 79 NGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQ--RSGGR 136
Query: 280 ISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKI 339
+S R V V ++ CR + V C G L PL C+
Sbjct: 137 LSRFPRFVNVTVTPEDQCRPNNV-------------CTGVLTRRGGICNGDGGTPLVCE- 182
Query: 340 GGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
+ GV S+ G + P +TRV+ + WI+
Sbjct: 183 ---GLAHGVASFSLGPCGRG-PDFFTRVALFRDWID 214
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG +P+ IQ QG H+CGGA+I ++TAA C Q + +++
Sbjct: 1 IVGGRKARPRQFPFLASIQ-----NQGSHECGGALIHARFVMTAASCFQSQNPGVSTVVL 55
Query: 136 GKHNLNGVDKFEK-TFKV 152
G ++L ++ + TF +
Sbjct: 56 GAYDLRRRERQSRQTFSI 73
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 94/230 (40%), Gaps = 43/230 (18%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT--FKVEKAVLHHRFRK 224
CGGA+ + ++LTAAHC+ G + G GV + + KV +
Sbjct: 22 CGGALYAQDIVLTAAHCVSGSGNNTSITATG-----GVVDLQSSSAVKVRSTKVLQAPGY 76
Query: 225 EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW----CVVTGWGAQNAESIDDI 280
GT D A++K+ QPI P A + + V GWGA N E
Sbjct: 77 NGT-GKDWALIKL---------AQPINQPTLKIATTTAYNQGTFTVAGWGA-NREGGSQQ 125
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIG 340
L+A V + CRS+ YGN + + + +CAGY + P G
Sbjct: 126 RYLLKA-NVPFVSDAACRSA--YGN--ELVANEEICAGYPDTGGVD-------PCQGDSG 173
Query: 341 G---------RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQML 381
G ++ G+VSWG GCA+ PGVYT VS + I + L
Sbjct: 174 GPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAARTL 223
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG 125
+VGGT G +P+ V + + CGGA+ + ++LTAAHC+ G
Sbjct: 1 VVGGTRAAQGEFPFMVRLSM---------GCGGALYAQDIVLTAAHCVSG 41
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 94/223 (42%), Gaps = 29/223 (13%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT--FKVEKAVLHHRFRK 224
CGGA+ + ++LTAAHC+ G + G GV + + KV +
Sbjct: 22 CGGALYAQDIVLTAAHCVSGSGNNTSITATG-----GVVDLQSSSAVKVRSTKVLQAPGY 76
Query: 225 EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW----CVVTGWGAQNAESIDDI 280
GT D A++K+ QPI P A + + V GWGA N E
Sbjct: 77 NGT-GKDWALIKL---------AQPINQPTLKIATTTAYNQGTFTVAGWGA-NREGGSQQ 125
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXX-XXXXXXPLACKI 339
L+A V + CRS+ YGN + + + +CAGY + P+ K
Sbjct: 126 RYLLKA-NVPFVSDAACRSA--YGN--ELVANEEICAGYPDTGGVDTCQGDSGGPMFRKD 180
Query: 340 GG-RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQML 381
++ G+VSWG GCA+ PGVYT VS + I + L
Sbjct: 181 NADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAARTL 223
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG 125
+VGGT G +P+ V + + CGGA+ + ++LTAAHC+ G
Sbjct: 1 VVGGTRAAQGEFPFMVRLSM---------GCGGALYAQDIVLTAAHCVSG 41
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 29/223 (13%)
Query: 167 CGGAIISDTVILTAAHCLQGI-SKSKLRIIVGKHNL-NGVDKFEKTFKVEKAVLHHRFRK 224
CGGA+ + ++LTAAHC+ G + + + G +L +G ++ KV +A ++ K
Sbjct: 22 CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSGAAVKVRSTKVLQAPGYNGTGK 81
Query: 225 EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW----CVVTGWGAQNAESIDDI 280
D A++K+ QPI P A + + V GWGA N E
Sbjct: 82 ------DWALIKL---------AQPINQPTLKIATTTAYNQGTFTVAGWGA-NREGGSQQ 125
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXX-XXXXXXPLACKI 339
L+A V + CRS+ YGN + + + +CAGY + P+ K
Sbjct: 126 RYLLKA-NVPFVSDAACRSA--YGN--ELVANEEICAGYPDTGGVDTCQGDSGGPMFRKD 180
Query: 340 GG-RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQML 381
++ G+VSWG GCA+ PGVYT VS + I + L
Sbjct: 181 NADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAARTL 223
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG 125
+VGGT G +P+ V + + CGGA+ + ++LTAAHC+ G
Sbjct: 1 VVGGTRAAQGEFPFMVRLSM---------GCGGALYAQDIVLTAAHCVSG 41
>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|B Chain B, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|Y Chain Y, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|B Chain B, Kallikrein Complexed With Hirustasin
pdb|1HIA|Y Chain Y, Kallikrein Complexed With Hirustasin
Length = 152
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 228 HSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID-DISNTLRA 286
+S+D+ +++++ + V+ + +P ++ S C +GWG+ D + + ++
Sbjct: 6 YSHDLMLLRLQSPAKITDAVKVLELPTQEPELGST-CEASGWGSIEPGPDDFEFPDEIQC 64
Query: 287 ATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLS 346
+ ++ C + + +SMLCAGYL PL C +
Sbjct: 65 VQLTLLQNTFCADA-----HPDKVTESMLCAGYLPGGKDTCMGDSGGPLIC----NGMWQ 115
Query: 347 GVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRI 378
G+ SWG C NKP +YT++ +Y WI+D I
Sbjct: 116 GITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(cap37)
Length = 225
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 24/216 (11%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK-TFKVEKAVLHH 220
QG H CGGA+I ++TAA C Q + +++G ++L ++ + TF + +
Sbjct: 21 QGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISS--MSE 78
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDD 279
+ ND+ ++++ V + +P ++ A C V GWG+Q S
Sbjct: 79 NGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQ--RSGGR 136
Query: 280 ISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKI 339
+S R V V ++ CR + V C G L PL C+
Sbjct: 137 LSRFPRFVNVTVTPEDQCRPNNV-------------CTGVLTRRGGICNGDQGTPLVCE- 182
Query: 340 GGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
+ GV S+ G + P +TRV+ + WI+
Sbjct: 183 ---GLAHGVASFSLGPCGRG-PDFFTRVALFRDWID 214
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG +P+ IQ QG H CGGA+I ++TAA C Q + +++
Sbjct: 1 IVGGRKARPRQFPFLASIQ-----NQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVL 55
Query: 136 GKHNLNGVDKFEK-TFKVE 153
G ++L ++ + TF +
Sbjct: 56 GAYDLRRRERQSRQTFSIS 74
>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp
pdb|1AE5|A Chain A, Human Heparin Binding Protein
Length = 225
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 24/216 (11%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDK-FEKTFKVEKAVLHH 220
QG H CGGA+I ++TAA C Q + +++G ++L ++ +TF + +
Sbjct: 21 QGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISS--MSE 78
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDD 279
+ ND+ ++++ V + +P ++ A C V GWG+Q S
Sbjct: 79 NGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQ--RSGGR 136
Query: 280 ISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKI 339
+S R V V ++ CR + V C G L PL C+
Sbjct: 137 LSRFPRFVNVTVTPEDQCRPNNV-------------CTGVLTRRGGICNGDGGTPLVCE- 182
Query: 340 GGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
+ GV S+ G + P +TRV+ + WI+
Sbjct: 183 ---GLAHGVASFSLGPCGRG-PDFFTRVALFRDWID 214
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG +P+ IQ QG H CGGA+I ++TAA C Q + +++
Sbjct: 1 IVGGRKARPRQFPFLASIQ-----NQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVL 55
Query: 136 GKHNLNGVDK-FEKTFKVE 153
G ++L ++ +TF +
Sbjct: 56 GAYDLRRRERQSRQTFSIS 74
>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
pdb|3H7O|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
Length = 228
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 24/231 (10%)
Query: 154 IQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKV 213
+ VR+ G+ CGGAI+S +LTAAHC+ + I NL +E K
Sbjct: 15 VAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTNL-----WEDPGKS 69
Query: 214 EKAVLH--HRFRKEGTHSNDIAVVKIRGNIEFNQY-VQPICIPDRD--NAAASDWCVVTG 268
+ V H F ++ T NDIA++++ ++ + +P +PD + SD +V+G
Sbjct: 70 DPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSD-VLVSG 128
Query: 269 WGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
+G + +++D + L++A + V+D + CR+ YG ++ + CA +
Sbjct: 129 YG--DGQTMDPKDHDLKSAQLTVVDLDECRTK--YGPIFLSL--QVFCAQKVGVSLESGD 182
Query: 329 XXXXXPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ L GV ++ + P V+T+V Y WI D I+
Sbjct: 183 A------GDPTVQQDTLVGVAAYFPK-RPEGAPEVFTKVGSYVSWIQDIIK 226
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 78 GGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL 123
GG T PW V VR+ G+ CGGAI+S +LTAAHC+
Sbjct: 2 GGEKTDIKQVPWTV--AVRTYPGEESLTCGGAILSQWFVLTAAHCV 45
>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
pdb|1AKS|B Chain B, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
Length = 98
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 284 LRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRF 343
L+ V+ ++C+SS I +M+C G+L P+ C G+
Sbjct: 10 LQCLKAPVLSNSSCKSSYP-----GQITGNMICVGFLQGGKDSCQGDSGGPVVCN--GQ- 61
Query: 344 VLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 62 -LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 95
>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 98
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 284 LRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRF 343
L+ V+ ++C+SS I +M+C G+L P+ C G+
Sbjct: 10 LQCLKAPVLSDSSCKSSYP-----GQITGNMICVGFLEGGKDSCQGDSGGPVVCN--GQ- 61
Query: 344 VLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
L G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 62 -LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 95
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CGG +I+ ++TAAHC + ++ +G H+ +++ E+T ++ +
Sbjct: 26 CGGTLINPEWVVTAAHC----DSTDFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNNE 81
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNA--ESIDDISNTL 284
DI ++K+ I ++++ P+ +P + S C + GWG+ E+ D+
Sbjct: 82 VLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGS-VCRIMGWGSITPVKETFPDVP--- 137
Query: 285 RAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFV 344
A + ++D C++ G LCAG + PL C G+F
Sbjct: 138 YCANINLLDHAVCQA----GYPELLAEYRTLCAGIVQGGKDTCGGDSGGPLICN--GQF- 190
Query: 345 LSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRI 378
G+VS+G C + KPG+YT V YT WI I
Sbjct: 191 -QGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNI 224
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
CGG +I+ ++TAAHC + ++ +G H+ +++ E+T ++ +
Sbjct: 26 CGGTLINPEWVVTAAHC----DSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNNE 81
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNA--ESIDDISNTL 284
DI ++K+ I ++++ P+ +P + S C + GWG+ E+ D+
Sbjct: 82 VLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGS-VCRIMGWGSITPVKETFPDVP--- 137
Query: 285 RAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFV 344
A + ++D C++ G LCAG + PL C G+F
Sbjct: 138 YCANINLLDHAVCQA----GYPELLAEYRTLCAGIVQGGKDTCGGDSGGPLICN--GQF- 190
Query: 345 LSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRI 378
G+VS+G C + KPG+YT V YT WI I
Sbjct: 191 -QGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNI 224
>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A
Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms
Resolution
Length = 218
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 37/236 (15%)
Query: 150 FKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK 209
F V +Q+R G H CG +I+ +++AAHC+ ++ +R+++G HNL+ + +
Sbjct: 14 FMVSLQLR-----GGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQ 68
Query: 210 TFKVEKAVLHHRFRKEGTHS----NDIAVVKIRGNIEFNQYVQPICIPDRDNAAASD-WC 264
F V+ R ++G NDI ++++ G+ N VQ +P + + C
Sbjct: 69 VFAVQ------RIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQC 122
Query: 265 VVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXX 324
+ GWG I++ L+ V V+ + CR S V C
Sbjct: 123 LAMGWGLLGRNR--GIASVLQELNVTVVT-SLCRRSNV-------------CTLVRGRQA 166
Query: 325 XXXXXXXXXPLACKIGGRFVLSGVVSW-GDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C ++ G+ S+ GCA P + V+ + WI+ IQ
Sbjct: 167 GVCFGDSGSPLVCN----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ 218
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG A+P+ V +Q+R G H CG +I+ +++AAHC+ ++ +R+++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLR-----GGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HNL+ + + F V+
Sbjct: 56 GAHNLSRREPTRQVFAVQ 73
>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human
Leukocyte Elastase In A Complex With A Valine
Chloromethyl Ketone Inhibitor
pdb|1H1B|A Chain A, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|1H1B|B Chain B, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|2Z7F|E Chain E, Crystal Structure Of The Complex Of Human Neutrophil
Elastase With 12SLPI
pdb|3Q76|A Chain A, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q76|B Chain B, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q77|A Chain A, Structure Of Human Neutrophil Elastase In Complex With A
Dihydropyrimidone Inhibitor
Length = 218
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 29/232 (12%)
Query: 150 FKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK 209
F V +Q+R G H CG +I+ +++AAHC+ ++ +R+++G HNL+ + +
Sbjct: 14 FMVSLQLR-----GGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQ 68
Query: 210 TFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASD-WCVVTG 268
F V++ + NDI ++++ G+ N VQ +P + + C+ G
Sbjct: 69 VFAVQR--IFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMG 126
Query: 269 WGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
WG I++ L+ V V+ + CR S V C
Sbjct: 127 WGLLGRNR--GIASVLQELNVTVVT-SLCRRSNV-------------CTLVRGRQAGVCF 170
Query: 329 XXXXXPLACKIGGRFVLSGVVSW-GDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C ++ G+ S+ GCA P + V+ + WI+ IQ
Sbjct: 171 GDSGSPLVCN----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ 218
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG A+P+ V +Q+R G H CG +I+ +++AAHC+ ++ +R+++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLR-----GGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HNL+ + + F V+
Sbjct: 56 GAHNLSRREPTRQVFAVQ 73
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG 226
C G +I++ +LTAAHC + ++ +G H+ +++ E+T ++ + + +
Sbjct: 26 CSGTLINEEWVLTAAHC----DNTNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDE 81
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTLRA 286
DI ++K+ + ++++ P+ +P + S C + GWG+ + +
Sbjct: 82 VLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGS-VCHIMGWGSITPIKVT-YPDVPYC 139
Query: 287 ATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRFVLS 346
A + ++D C++ G LCAG L PL C G+F
Sbjct: 140 AYINLLDDAVCQA----GYPELLTEYRTLCAGILEGGKDTCGGDSGGPLICN--GQF--Q 191
Query: 347 GVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRI 378
G+VS+G C + KPGVYT+V Y WI I
Sbjct: 192 GIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSII 224
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 18/128 (14%)
Query: 135 VGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQ-GISKSKLR 193
VG + N D+ + V I+ +S + C GA+ISD +LTAAHC + G S R
Sbjct: 230 VGNMSANASDQERTPWHVTIKPKS-----QETCRGALISDQWVLTAAHCFRDGNDHSLWR 284
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRF-----RKEGT---HSNDIAVVKIRGNIEFNQ 245
+ VG + ++ K F +EKAV+ F + +G + +DIA++K+ ++ +
Sbjct: 285 VNVG----DPKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMST 340
Query: 246 YVQPICIP 253
+ +PIC+P
Sbjct: 341 HARPICLP 348
>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase
Length = 218
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 150 FKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK 209
F V +Q+R G H CG +I+ +++AAHC+ ++ +R+++G HNL+ + +
Sbjct: 14 FMVSLQLR-----GGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQ 68
Query: 210 TFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASD-WCVVTG 268
F V++ + NDI ++++ G+ N VQ +P + + C+ G
Sbjct: 69 VFAVQR--IFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMG 126
Query: 269 WGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
WG I++ L+ V V+ + CR S V C
Sbjct: 127 WGLLGRNR--GIASVLQELNVTVVT-SLCRRSNV-------------CTLVRGRQAGVCF 170
Query: 329 XXXXXPLACKIGGRFVLSGVVSW-GDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C ++ G+ S+ GCA P + V+ + WI+ IQ
Sbjct: 171 GDXGSPLVCN----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ 218
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG A+P+ V +Q+R G H CG +I+ +++AAHC+ ++ +R+++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLR-----GGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HNL+ + + F V+
Sbjct: 56 GAHNLSRREPTRQVFAVQ 73
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 18/128 (14%)
Query: 135 VGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQ-GISKSKLR 193
VG + N D+ + V I+ +S + C GA+ISD +LTAAHC + G S R
Sbjct: 222 VGNMSANASDQERTPWHVTIKPKS-----QETCRGALISDQWVLTAAHCFRDGNDHSLWR 276
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRF-----RKEGT---HSNDIAVVKIRGNIEFNQ 245
+ VG + ++ K F +EKAV+ F + +G + +DIA++K+ ++ +
Sbjct: 277 VNVG----DPKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMST 332
Query: 246 YVQPICIP 253
+ +PIC+P
Sbjct: 333 HARPICLP 340
>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDG|B Chain B, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDH|A Chain A, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|B Chain B, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|C Chain C, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|D Chain D, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDI|A Chain A, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|B Chain B, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|C Chain C, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|D Chain D, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|E Chain E, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|F Chain F, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|G Chain G, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|H Chain H, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|I Chain I, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|J Chain J, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|K Chain K, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|L Chain L, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|M Chain M, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|N Chain N, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|O Chain O, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|P Chain P, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
Length = 223
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 20/220 (9%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAV-LHH 220
+ E C G ++ +L+AAHC Q + I +G H+L D+ + VE ++ + H
Sbjct: 21 ENELFCSGVLVHPQWVLSAAHCFQ----NSYTIGLGLHSLE-ADQEPGSQMVEASLSVRH 75
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDI 280
+ND+ ++K+ ++ + ++ I I + A + C+V+GWG + +
Sbjct: 76 PEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNS-CLVSGWGLLANGRMPTV 134
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIG 340
L+ V V+ + C S +Y + SM CAG PL C
Sbjct: 135 ---LQCVNVSVVSEEVC--SKLY---DPLYHPSMFCAGGGQDQKDSCNGDSGGPLIC--- 183
Query: 341 GRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRIQ 379
L G+VS+G C + PGVYT + +T+WI +Q
Sbjct: 184 -NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ 222
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+ G + PWQ + + + E C G ++ +L+AAHC Q + I +
Sbjct: 1 IINGEDCSPHSQPWQAALVMEN-----ELFCSGVLVHPQWVLSAAHCFQ----NSYTIGL 51
Query: 136 GKHNL 140
G H+L
Sbjct: 52 GLHSL 56
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 142 GVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNL 201
G D ++ ++ ++ TG H CGG++IS+ ++TAAHC G+ S + ++ G+ +
Sbjct: 1 GEDAIPGSWPWQVSLQDKTGF--HFCGGSLISEDWVVTAAHC--GVKTSDV-VVAGEFDQ 55
Query: 202 NGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNAAA 260
++ + K+ + + +F T NDI ++K+ +F++ V +C+P+ D+
Sbjct: 56 GSDEENIQVLKIAQVFKNPKFNM-FTVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPP 114
Query: 261 SDWCVVTGWG 270
C TGWG
Sbjct: 115 GTVCATTGWG 124
>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
pdb|3H7T|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
Length = 235
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 17/216 (7%)
Query: 167 CGGAIISDTVILTAAHCLQGISKSKLRIIVGK--HNLNGVDKFEKTFKVEKAVLHHRFRK 224
CGG+I++ ++TAA C+ G S + I G G K + V +H
Sbjct: 26 CGGSILTANFVITAAQCVDGTKPSDISIHYGSSYRTTKGTSVMAKKIYI---VRYHPL-- 80
Query: 225 EGTHSNDIAVVKIRGNIEF-NQYVQPICIPDRDNAAASDWCV-VTGWGAQNAESIDDISN 282
T N+ AV++ I+ ++ + I +P D V V+GWG+ N +S+ + S
Sbjct: 81 --TMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSL-EYSG 137
Query: 283 TLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGR 342
L A V+D+ +C +++ I D + CAG P A + G
Sbjct: 138 DLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDP-AVQNG-- 194
Query: 343 FVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
L GV S+ + P V+ RV YY I D I
Sbjct: 195 -TLVGVASYISSMPSEF-PSVFLRVGYYVLDIKDII 228
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + PW V + V + CGG+I++ ++TAA C+ G S + I
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDE-----KPFCGGSILTANFVITAAQCVDGTKPSDISIHY 55
Query: 136 G 136
G
Sbjct: 56 G 56
>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 131
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 140 LNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKH 199
+NG D ++ ++ ++ TG H CGG++IS+ ++TAAHC G+ S + ++ G+
Sbjct: 2 VNGEDAIPGSWPWQVSLQDKTGF--HFCGGSLISEDWVVTAAHC--GVKTSDV-VVAGEF 56
Query: 200 NLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNA 258
+ ++ + K+ + + +F T NDI ++K+ +F++ V + +P+ D+
Sbjct: 57 DQGSDEENIQVLKIAQVFKNPKFNM-FTVRNDITLLKLATPAQFSETVSAVSLPNVDDDF 115
Query: 259 AASDWCVVTGWG 270
C TGWG
Sbjct: 116 PPGTVCATTGWG 127
>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl
101, 146
Length = 218
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 37/236 (15%)
Query: 150 FKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK 209
F V +Q+ G H CG +I+ +++AAHC+ ++ +R+++G HNL+ + +
Sbjct: 14 FMVSLQL-----AGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQ 68
Query: 210 TFKVEKAVLHHRFRKEGTHS----NDIAVVKIRGNIEFNQYVQPICIPDRDNAAASD-WC 264
F V+ R ++G NDI ++++ G+ N VQ +P + + C
Sbjct: 69 VFAVQ------RIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQC 122
Query: 265 VVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXX 324
+ GWG I++ L+ V V+ + CR S V C
Sbjct: 123 LAMGWGLLGRNR--GIASVLQELNVTVVT-SLCRRSNV-------------CTLVRGRQA 166
Query: 325 XXXXXXXXXPLACKIGGRFVLSGVVSW-GDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
PL C ++ G+ S+ GCA P + V+ + WI+ IQ
Sbjct: 167 GVCFGDSGSPLVCN----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ 218
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG A+P+ V +Q+ G H CG +I+ +++AAHC+ ++ +R+++
Sbjct: 1 IVGGRRARPHAWPFMVSLQL-----AGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HNL+ + + F V+
Sbjct: 56 GAHNLSRREPTRQVFAVQ 73
>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte
Elastase (Pmn Elastase) And The Third Domain Of The
Turkey Ovomucoid Inhibitor
Length = 218
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 29/231 (12%)
Query: 150 FKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK 209
F V +Q+R G H CG +I+ +++AAHC+ ++ +R+++G HNL+ + +
Sbjct: 14 FMVSLQLR-----GGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQ 68
Query: 210 TFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASD-WCVVTG 268
F V++ + NDI ++++ G+ N VQ +P + + C+ G
Sbjct: 69 VFAVQR--IFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMG 126
Query: 269 WGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXX 328
WG I++ L+ V V+ + CR S V C
Sbjct: 127 WGLLGRNR--GIASVLQELNVTVVT-SLCRRSNV-------------CTLVRGRQAGVCF 170
Query: 329 XXXXXPLACKIGGRFVLSGVVSW-GDGCAKKNKPGVYTRVSYYTKWINDRI 378
PL C ++ G+ S+ GCA P + V+ + WI+ I
Sbjct: 171 GDSGSPLVCN----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG A+P+ V +Q+R G H CG +I+ +++AAHC+ ++ +R+++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLR-----GGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HNL+ + + F V+
Sbjct: 56 GAHNLSRREPTRQVFAVQ 73
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 41/243 (16%)
Query: 142 GVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKS-KLRIIVGKHN 200
G D ++ ++ +I V + +G C GA++S+ +LTAAHC K +++ VG
Sbjct: 453 GTDYHKQPWQAKISVIRPS-KGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE- 510
Query: 201 LNGVDKFEKTFKVEKAVLHHRFRKEGT--------HSNDIAVVKIRGNIEFNQYVQPICI 252
++ ++E + H + G + D+A++K++ +++ Q ++PIC+
Sbjct: 511 -------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 563
Query: 253 PDRDNAAASDWCVVTGWGAQNAESI-------------DDISNTLRAATVKVIDQN-TCR 298
P + + T Q E + ++ T + +K D+ +C
Sbjct: 564 PCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCE 623
Query: 299 SSAVYGNSNQNILD-------SMLCAGYLNXXXXXXXXXXXX--PLACKIGGRFVLSGVV 349
A Y + D LC G ++ PL RF+ GV+
Sbjct: 624 RDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVI 683
Query: 350 SWG 352
SWG
Sbjct: 684 SWG 686
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 97/244 (39%), Gaps = 41/244 (16%)
Query: 141 NGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKS-KLRIIVGKH 199
G D ++ ++ +I V + +G C GA++S+ +LTAAHC K +++ VG
Sbjct: 20 KGTDYHKQPWQAKISVIRPS-KGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE 78
Query: 200 NLNGVDKFEKTFKVEKAVLHHRFRKEGT--------HSNDIAVVKIRGNIEFNQYVQPIC 251
++ ++E + H + G + D+A++K++ +++ Q ++PIC
Sbjct: 79 --------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPIC 130
Query: 252 IPDRDNAAASDWCVVTGWGAQNAESI-------------DDISNTLRAATVKVIDQN-TC 297
+P + + T Q E + ++ T + +K D+ +C
Sbjct: 131 LPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSC 190
Query: 298 RSSAVYGNSNQNILD-------SMLCAGYLNXXXXXXXXXXXX--PLACKIGGRFVLSGV 348
A Y + D LC G ++ PL RF+ GV
Sbjct: 191 ERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGV 250
Query: 349 VSWG 352
+SWG
Sbjct: 251 ISWG 254
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 41/243 (16%)
Query: 142 GVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKS-KLRIIVGKHN 200
G D ++ ++ +I V + +G C GA++S+ +LTAAHC K +++ VG
Sbjct: 462 GTDYHKQPWQAKISVIRPS-KGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE- 519
Query: 201 LNGVDKFEKTFKVEKAVLHHRFRKEGT--------HSNDIAVVKIRGNIEFNQYVQPICI 252
++ ++E + H + G + D+A++K++ +++ Q ++PIC+
Sbjct: 520 -------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 572
Query: 253 PDRDNAAASDWCVVTGWGAQNAESI-------------DDISNTLRAATVKVIDQN-TCR 298
P + + T Q E + ++ T + +K D+ +C
Sbjct: 573 PCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCE 632
Query: 299 SSAVYGNSNQNILD-------SMLCAGYLNXXXXXXXXXXXX--PLACKIGGRFVLSGVV 349
A Y + D LC G ++ PL RF+ GV+
Sbjct: 633 RDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVI 692
Query: 350 SWG 352
SWG
Sbjct: 693 SWG 695
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 41/243 (16%)
Query: 142 GVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKS-KLRIIVGKHN 200
G D ++ ++ +I V + +G C GA++S+ +LTAAHC K +++ VG
Sbjct: 472 GTDYHKQPWQAKISVIRPS-KGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE- 529
Query: 201 LNGVDKFEKTFKVEKAVLHHRFRKEGT--------HSNDIAVVKIRGNIEFNQYVQPICI 252
++ ++E + H + G + D+A++K++ +++ Q ++PIC+
Sbjct: 530 -------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 582
Query: 253 PDRDNAAASDWCVVTGWGAQNAESI-------------DDISNTLRAATVKVIDQN-TCR 298
P + + T Q E + ++ T + +K D+ +C
Sbjct: 583 PCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCE 642
Query: 299 SSAVYGNSNQNILD-------SMLCAGYLNXXXXXXXXXXXX--PLACKIGGRFVLSGVV 349
A Y + D LC G ++ PL RF+ GV+
Sbjct: 643 RDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVI 702
Query: 350 SWG 352
SWG
Sbjct: 703 SWG 705
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 41/243 (16%)
Query: 142 GVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKS-KLRIIVGKHN 200
G D ++ ++ +I V + +G C GA++S+ +LTAAHC K +++ VG
Sbjct: 228 GTDYHKQPWQAKISVIRPS-KGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE- 285
Query: 201 LNGVDKFEKTFKVEKAVLHHRFRKEGT--------HSNDIAVVKIRGNIEFNQYVQPICI 252
++ ++E + H + G + D+A++K++ +++ Q ++PIC+
Sbjct: 286 -------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 338
Query: 253 PDRDNAAASDWCVVTGWGAQNAESI-------------DDISNTLRAATVKVIDQN-TCR 298
P + + T Q E + ++ T + +K D+ +C
Sbjct: 339 PCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCE 398
Query: 299 SSAVYGNSNQNILD-------SMLCAGYLNXXXXXXXXXXXX--PLACKIGGRFVLSGVV 349
A Y + D LC G ++ PL RF+ GV+
Sbjct: 399 RDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVI 458
Query: 350 SWG 352
SWG
Sbjct: 459 SWG 461
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 41/243 (16%)
Query: 142 GVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKS-KLRIIVGKHN 200
G D ++ ++ +I V + +G C GA++S+ +LTAAHC K +++ VG
Sbjct: 220 GTDYHKQPWQAKISVIRPS-KGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE- 277
Query: 201 LNGVDKFEKTFKVEKAVLHHRFRKEGT--------HSNDIAVVKIRGNIEFNQYVQPICI 252
++ ++E + H + G + D+A++K++ +++ Q ++PIC+
Sbjct: 278 -------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 330
Query: 253 PDRDNAAASDWCVVTGWGAQNAESI-------------DDISNTLRAATVKVIDQN-TCR 298
P + + T Q E + ++ T + +K D+ +C
Sbjct: 331 PCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCE 390
Query: 299 SSAVYGNSNQNILD-------SMLCAGYLNXXXXXXXXXXXX--PLACKIGGRFVLSGVV 349
A Y + D LC G ++ PL RF+ GV+
Sbjct: 391 RDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVI 450
Query: 350 SWG 352
SWG
Sbjct: 451 SWG 453
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 208 EKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDW 263
EK +EK +H R+ DIA++K++ + F+ Y+ P+C+PDR+ AA A
Sbjct: 3 EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYK 62
Query: 264 CVVTGWG 270
VTGWG
Sbjct: 63 GRVTGWG 69
>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 99
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 284 LRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRF 343
L+ A + ++ + C+ S +G+ I D M CAG PL C+ G +
Sbjct: 9 LQQAALPIVSEADCKKS--WGS---KITDVMTCAG--ASGVDSCMGDSGGPLVCQKDGVW 61
Query: 344 VLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
L+G+VSWG G + PGVY+RV+ W+ ++
Sbjct: 62 TLAGIVSWGSGVCSTSTPGVYSRVTALMPWVQQILE 97
>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 99
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 284 LRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRF 343
L+ A + ++ + C+ S +G+ I D M CAG PL C+ G +
Sbjct: 9 LQQAALPIVSEADCKKS--WGS---KITDVMTCAG--ASGVDSCMGDSGGPLVCQKDGVW 61
Query: 344 VLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
L+G+VSWG G + P VY+RV+ W+ ++
Sbjct: 62 TLAGIVSWGSGVCSTSTPAVYSRVTALMPWVQQILE 97
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 41/234 (17%)
Query: 168 GGAIISDTVILTAAHCL----QGISKSK-----LRIIVGKHNLNGVDKFEKTFKVEKAVL 218
G +I++ +LT A L + +K+K LR+ VGK ++ ++EK +
Sbjct: 129 GATLINEQWLLTTAKNLRLGHKNDTKAKDIAPTLRLYVGK---------KQEVEIEKVIF 179
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID 278
H + DI ++K++ + N+ V PIC+P +D V+GWG +NA
Sbjct: 180 H-----PDNSTVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWG-RNANL-- 231
Query: 279 DISNTLRAATVKVIDQNTC----RSSAVYGNSN-------QNILDS-MLCAGYLNXXXXX 326
+ + L+ + V DQ C S V Q IL+ CAG
Sbjct: 232 NFTEHLKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDT 291
Query: 327 XXXXXXXPLAC--KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
A K + +G++S+ C + + GVY RV+ WI I
Sbjct: 292 CYGDAGSAFAVHDKDDDTWYAAGILSFDKSC-RTAEYGVYVRVTSILDWIQTTI 344
>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|G Chain G, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|C Chain C, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|H Chain H, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|C Chain C, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|H Chain H, Bovine Chymotrypsin Complexed To Bpti
pdb|1VGC|C Chain C, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|C Chain C, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|C Chain C, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|C Chain C, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|C Chain C, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|C Chain C, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|E Chain E, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|F Chain F, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|C Chain C, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|G Chain G, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|C Chain C, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|G Chain G, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|G Chain G, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|G Chain G, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|G Chain G, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|G Chain G, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|G Chain G, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|G Chain G, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|G Chain G, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|C Chain C, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|G Chain G, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|C Chain C, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|G Chain G, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|C Chain C, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|G Chain G, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|G Chain G, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|C Chain C, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|C Chain C, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|C Chain C, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|C Chain C, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|C Chain C, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
Length = 97
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGG 341
+ L+ A++ ++ C+ +G I D+M+CAG PL CK G
Sbjct: 5 DRLQQASLPLLSNTNCKK--YWGT---KIKDAMICAG--ASGVSSCMGDSGGPLVCKKNG 57
Query: 342 RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
+ L G+VSWG + PGVY RV+ W+ +
Sbjct: 58 AWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94
>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|3RU4|E Chain E, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 96
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 284 LRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACKIGGRF 343
L+ A++ ++ C+ +G I D+M+CAG PL CK G +
Sbjct: 6 LQQASLPLLSNTNCKK--YWGT---KIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAW 58
Query: 344 VLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
L G+VSWG + PGVY RV+ W+ +
Sbjct: 59 TLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 93
>pdb|1EPT|B Chain B, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 82
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 190 SKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQP 249
S++++ +G+HN++ ++ E+ K + H F T NDI ++K+ N V
Sbjct: 1 SRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVAT 59
Query: 250 ICIPDRDNAAASDWCVVTGWG 270
+ +P R AAA C+++GWG
Sbjct: 60 VSLP-RSCAAAGTECLISGWG 79
>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin
pdb|1BHX|F Chain F, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|C Chain C, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
Length = 105
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK--I 339
+ L+ + ++++ C+ S + I D+M CAGY AC+
Sbjct: 4 SVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD-------ACEGDS 51
Query: 340 GGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQE 383
GG FV+ G+VSWG+GC + K G YT V KWI I E
Sbjct: 52 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE 105
>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin
Length = 70
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL------QGISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL + +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQ---ELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKHN 139
L + +GKH+
Sbjct: 58 DLLVRIGKHS 67
Score = 35.8 bits (81), Expect = 0.038, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 6/40 (15%)
Query: 167 CGGAIISDTVILTAAHCL------QGISKSKLRIIVGKHN 200
CG ++ISD +LTAAHCL + +++ L + +GKH+
Sbjct: 28 CGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHS 67
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKL-RIIVGKHNLNGVDKFEKTFKV 213
QV+ + +G+ CGG II + +LT A C S L R I K N + K+
Sbjct: 108 QVKLTNSEGKDFCGGVIIRENFVLTTAKC------SLLHRNITVKTYFNRTSQDPLMIKI 161
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGW 269
+H R+ + ND++++++ I+ P+C P++D A +++GW
Sbjct: 162 THVHVHMRYDADAG-ENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGW 220
Query: 270 GAQNAESIDDISNTLRAATVKVIDQNTC 297
A + D+ N+L V +++ C
Sbjct: 221 ----ARNGTDLGNSLTTRPVTLVEGEEC 244
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 88 PWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHC 122
PWQV++ + +G+ CGG II + +LT A C
Sbjct: 106 PWQVKL----TNSEGKDFCGGVIIRENFVLTTAKC 136
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKL-RIIVGKHNLNGVDKFEKTFKV 213
QV+ + +G+ CGG II + +LT A C S L R I K N + K+
Sbjct: 67 QVKLTNSEGKDFCGGVIIRENFVLTTAKC------SLLHRNITVKTYFNRTSQDPLMIKI 120
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA----ASDWCVVTGW 269
+H R+ + ND++++++ I+ P+C P++D A +++GW
Sbjct: 121 THVHVHMRYDADAG-ENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGW 179
Query: 270 GAQNAESIDDISNTLRAATVKVIDQNTC 297
A + D+ N+L V +++ C
Sbjct: 180 ----ARNGTDLGNSLTTRPVTLVEGEEC 203
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 88 PWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHC 122
PWQV++ + +G+ CGG II + +LT A C
Sbjct: 65 PWQVKL----TNSEGKDFCGGVIIRENFVLTTAKC 95
>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|A Chain A, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|X Chain X, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|A Chain A, Kallikrein Complexed With Hirustasin
pdb|1HIA|X Chain X, Kallikrein Complexed With Hirustasin
Length = 80
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG ++PWQV I SS QCGG +++ +LTAAHC + +
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSF-----QCGGVLVNPKWVLTAAHC----KNDNYEVWL 51
Query: 136 GKHNL 140
G+HNL
Sbjct: 52 GRHNL 56
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 166 QCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
QCGG +++ +LTAAHC + +G+HNL + + F V H F
Sbjct: 25 QCGGVLVNPKWVLTAAHC----KNDNYEVWLGRHNLFENENTAQFFGVTADFPHPGF 77
>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|E Chain E, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|G Chain G, Thrombin:hirudin 51-65 Complex
pdb|1YCP|M Chain M, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 109
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK-- 338
+ L+ + ++++ C++S + I D+M CAGY AC+
Sbjct: 7 PSVLQVVNLPLVERPVCKAS-----TRIRITDNMFCAGYKPGEGKRGD-------ACEGD 54
Query: 339 IGGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQML 381
GG FV+ G+VSWG+GC + K G YT V KWI I L
Sbjct: 55 SGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRL 107
>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor
pdb|3PO1|C Chain C, Thrombin In Complex With Benzothiazole Guanidine
Length = 102
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 24/109 (22%)
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNXXXXXXXXXXXXPLACK--I 339
+ L+ + ++++ C+ S + I D+M CAGY AC+
Sbjct: 4 SVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYKPDEGKRGD-------ACEGDS 51
Query: 340 GGRFVLS----------GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
GG FV+ G+VSWG+GC + K G YT V KWI I
Sbjct: 52 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 100
>pdb|1EPT|A Chain A, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 43
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQ 124
IVGG + + P+QV + G H CGG++I+ +++AAHC +
Sbjct: 1 IVGGYTCAANSIPYQVSLN------SGSHFCGGSLINSQWVVSAAHCYK 43
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 153 EIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQ 185
I + S G H CGG++I+ +++AAHC +
Sbjct: 11 SIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYK 43
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 72 ANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKL 131
A VK+ + P + PWQ + Q +STG +I D +LT AHC++ ++ K+
Sbjct: 49 AVVKVYCTHTAPDYSLPWQKQRQF-TSTG------SAFMIGDGKLLTNAHCVEHDTQVKV 101
Query: 132 ------RIIVGKHNLNGVD 144
R V K + GVD
Sbjct: 102 KRRGDDRKYVAKVLVRGVD 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,039,733
Number of Sequences: 62578
Number of extensions: 434691
Number of successful extensions: 2594
Number of sequences better than 100.0: 356
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 711
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)