RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17339
(384 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 264 bits (677), Expect = 9e-88
Identities = 91/223 (40%), Positives = 127/223 (56%), Gaps = 7/223 (3%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
QV G H CGG++IS +LTAAHC+ + S + +G H+L+ + + KV+
Sbjct: 15 QVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHDLSSNEGGGQVIKVK 74
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQN 273
K ++H + T+ NDIA++K++ + + V+PIC+P N A C V+GWG +
Sbjct: 75 KVIVHPNYNP-STYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTS 133
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGG 333
+ + L+ V ++ C+ + YG I D+MLCAG L GG DAC GDSGG
Sbjct: 134 EGGP--LPDVLQEVNVPIVSNAECKRAYSYGG---TITDNMLCAGGLEGGKDACQGDSGG 188
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIND 376
PL C GR VL G+VSWG GCA+ N PGVYTRVS Y WI
Sbjct: 189 PLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQK 231
Score = 90.0 bits (224), Expect = 8e-21
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG+ G++PWQV +Q G H CGG++IS +LTAAHC+ + S + +
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTG----GRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRL 56
Query: 136 GKHNLNGVDKFEKTFKVE 153
G H+L+ + + KV+
Sbjct: 57 GSHDLSSNEGGGQVIKVK 74
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 254 bits (651), Expect = 7e-84
Identities = 96/221 (43%), Positives = 135/221 (61%), Gaps = 8/221 (3%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
QV G G H CGG++IS +LTAAHC++G S +R+ +G H+L+ + + KV
Sbjct: 16 QVSLQYGGGRHFCGGSLISPRWVLTAAHCVRGSDPSNIRVRLGSHDLS-SGEEGQVIKVS 74
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN-AAASDWCVVTGWGAQN 273
K ++H + T+ NDIA++K++ + + V+PIC+P + A C V+GWG +
Sbjct: 75 KVIIHPNYNPS-TYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWG-RT 132
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGG 333
+E + +TL+ V ++ TCR + G + I D+MLCAG L GG DAC GDSGG
Sbjct: 133 SEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGA---ITDNMLCAGGLEGGKDACQGDSGG 189
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C GR+VL G+VSWG GCA+ KPGVYTRVS Y WI
Sbjct: 190 PLVCN-DGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
Score = 83.5 bits (207), Expect = 1e-18
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 134
+IVGG+ G++PWQV +Q G H CGG++IS +LTAAHC++G S +R+
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGG----GRHFCGGSLISPRWVLTAAHCVRGSDPSNIRVR 56
Query: 135 VGKHNLNGVDKFEKTFKVE 153
+G H+L+ + + KV
Sbjct: 57 LGSHDLS-SGEEGQVIKVS 74
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 188 bits (478), Expect = 5e-58
Identities = 85/221 (38%), Positives = 124/221 (56%), Gaps = 18/221 (8%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
QV G+H CGG++IS+ +LTAAHC+ +R+++G HN+ + E+ F V+
Sbjct: 15 QVSLQVSSGKHFCGGSLISENWVLTAAHCVSN--AKSVRVVLGAHNIVLREGGEQKFDVK 72
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN-AAASDWCVVTGWGAQN 273
K ++H + + NDIA++K++ + V+PIC+P + C V+GWG
Sbjct: 73 KVIVHPNYNPDTD--NDIALLKLKSPVTLGDTVRPICLPTASSDLPVGTTCTVSGWGNTK 130
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGG 333
+ +TL+ TV V+ + TCRS+ + D+M+CAG GG DAC GDSGG
Sbjct: 131 T---LGLPDTLQEVTVPVVSRETCRSA-----YGGTVTDNMICAGA--GGKDACQGDSGG 180
Query: 334 PLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWI 374
PL C ++ G+VSWG GCA N PGVYT VS Y WI
Sbjct: 181 PLVC--SDGELI-GIVSWGYGCASGNYPGVYTPVSSYLDWI 218
Score = 70.2 bits (172), Expect = 5e-14
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG G++PWQV +QV S G+H CGG++IS+ +LTAAHC+ +R+++
Sbjct: 1 IVGGDEAQPGSFPWQVSLQVSS----GKHFCGGSLISENWVLTAAHCVSN--AKSVRVVL 54
Query: 136 GKHNLNGVDKFEKTFKVEIQVR 157
G HN+ + E+ F V+ +
Sbjct: 55 GAHNIVLREGGEQKFDVKKVIV 76
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 95.7 bits (238), Expect = 1e-21
Identities = 76/262 (29%), Positives = 101/262 (38%), Gaps = 37/262 (14%)
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLR 193
I+G N + E V + R S CGG+ + +LTAAHC S
Sbjct: 33 IIGGSN---ANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSD 89
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP 253
+ +LN + E+ V +H F G NDIAV+++ + +P
Sbjct: 90 VNRVVVDLNDSSQAERG-HVRTIYVHE-FYSPGNLGNDIAVLELA---------RAASLP 138
Query: 254 DRD--NAAASDWCV--VTGWG-AQNA----------ESIDDISNTLRAATVKVIDQNTCR 298
+ ASD + VT N L V + +TC
Sbjct: 139 RVKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTC- 197
Query: 299 SSAVYGNSNQNILDSML---CAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSWGDG- 354
+ G +N + + L CAG DAC GDSGGP+ K V GVVSWGDG
Sbjct: 198 -AQYKGCANASDGATGLTGFCAGRP--PKDACQGDSGGPIFHKGEEGRVQRGVVSWGDGG 254
Query: 355 CAKKNKPGVYTRVSYYTKWIND 376
C PGVYT VS Y WI
Sbjct: 255 CGGTLIPGVYTNVSNYQDWIAA 276
Score = 43.3 bits (102), Expect = 2e-04
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 75 KIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 134
+I+GG++ G YP V + R S CGG+ + +LTAAHC S +
Sbjct: 32 RIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVN 91
Query: 135 VGKHNLNGVDKFEK 148
+LN + E+
Sbjct: 92 RVVVDLNDSSQAER 105
>gnl|CDD|221582 pfam12448, Milton, Kinesin associated protein. This domain family
is found in eukaryotes, and is typically between 143 and
173 amino acids in length. The family is found in
association with pfam04849. This family is a region of
the protein milton. Milton recruits the heavy chain of
kinesin to mitochondria to allow the motor movement
function of kinesin.
Length = 158
Score = 30.7 bits (69), Expect = 0.68
Identities = 7/52 (13%), Positives = 15/52 (28%)
Query: 80 TSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKL 131
P + + Q G S++++ T + S+ L
Sbjct: 94 AEKPAFTEERERKGQNLGRQPADGEISSGLTPSESIMSTGSISSSSSSRLYL 145
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 31.3 bits (71), Expect = 0.99
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 230 NDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATV 289
N +AVV I + + + IPD D A+S A + E++ TL+AA
Sbjct: 149 NGVAVVTIPVDFGWQE------IPDNDYYASSVSYQTPLLPAPDVEAVTRAVQTLKAAER 202
Query: 290 KVI 292
VI
Sbjct: 203 PVI 205
>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S
ribosomal protein L9; Provisional.
Length = 838
Score = 31.0 bits (70), Expect = 1.2
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSA-VYGNSN-QNILDSMLCAGYLN 321
AQ AES+ +I N A + I NT SA Y N Q I++ M G+LN
Sbjct: 604 AQVAESVLNIQNVDAAFMIAKISDNTIAISARSYNEINVQTIMEQMEGGGHLN 656
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 30.4 bits (69), Expect = 1.2
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 87 YPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL 123
+P+ +Q ++TG+ +I +LTA HC+
Sbjct: 49 FPYSAVVQFEAATGRL--CTAATLIGPNTVLTAGHCI 83
Score = 30.0 bits (68), Expect = 1.5
Identities = 39/222 (17%), Positives = 56/222 (25%), Gaps = 33/222 (14%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKA-V 217
G +I +LTA HC+ + I +N + V
Sbjct: 58 EAATGRLCTAATLIGPNTVLTAGHCIYSPDYGEDDIAAAPPGVNSDGGPFYGITKIEIRV 117
Query: 218 LHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESI 277
KE S D+ + I V + A A+D V G+
Sbjct: 118 YPGELYKEDGASYDVGEAALESGINIGDVVNYLKRNTASEAKANDRITVIGYPGDKPNIG 177
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLAC 337
+T V I N L D G SG P+
Sbjct: 178 TMWEST---GKVNSIKGN-----------------------KLFYDADTLPGSSGSPVLI 211
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ + GV G G + T I + IQ
Sbjct: 212 S---KDEVIGVHYNGPGANGGSL---ANNAVRLTPEILNFIQ 247
>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family
includes trypsin like peptidase domains.
Length = 138
Score = 28.3 bits (63), Expect = 3.3
Identities = 30/165 (18%), Positives = 52/165 (31%), Gaps = 42/165 (25%)
Query: 171 IISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSN 230
+ SD +ILT AH ++ S++ +++ D +V A
Sbjct: 6 VGSDGLILTNAHVVEDADASEIEVVL-------PDGGRVPAEVVAADPDL---------- 48
Query: 231 DIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVK 290
D+A++K+ G P ++AA V G + +
Sbjct: 49 DLALLKVDGP-------LLPAAPLLASSAAPLGGSVVVVGGPGGIGLGASGGGGGVGGL- 100
Query: 291 VIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPL 335
S ++ G + IL D G SGGP+
Sbjct: 101 -------VSGSLGGVDGRYILTDA----------DTSPGSSGGPV 128
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 29.4 bits (66), Expect = 4.2
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 125 GISKSK-LRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHC 183
GI KS L++I G+ + F ++ KV + V S +H G +S +L C
Sbjct: 545 GIGKSTILKLISGELQPSSGTVF-RSAKVRMAVFS-----QHHVDGLDLSSNPLLYMMRC 598
Query: 184 LQGISKSKLRIIVGKHNLNG 203
G+ + KLR +G + G
Sbjct: 599 FPGVPEQKLRAHLGSFGVTG 618
>gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase.
Length = 187
Score = 28.1 bits (63), Expect = 5.7
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 323 GIDACGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNK-PGVYTRVSYYTKWINDRIQM 380
GI+A G G P+A IG +FV K K PG Y ++ D ++M
Sbjct: 68 GIEARGFIFGPPIALAIGAKFVP---------LRKPGKLPGEVISEEYVLEYGTDCLEM 117
>gnl|CDD|221854 pfam12920, TcdA_TcdB_pore, TcdA/TcdB pore forming domain. This
family represents the most conserved region within the
C. difficile Toxin A and Toxin B pore forming region.
Length = 654
Score = 28.8 bits (65), Expect = 6.1
Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 24/176 (13%)
Query: 68 PQRAANVKIVGGTSTPYGAYPWQVEIQ--VRSSTGQGEHQCGGAIISDTVILTAAHCLQG 125
AAN+++ ++ W ++ V+ ST Q E I+ VI+ L
Sbjct: 481 SSGAANIELNSDSTKNS---KWIIDASALVKESTIQIED---NNIVVGGVIV---DILST 531
Query: 126 ISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQ 185
++ SK++II+GK +N VD K++ + + + +I L AH L
Sbjct: 532 LTISKVKIIIGKQEINEVDFSSKSYLLLVSEDAKKWIVN---MQSIEDHLNALAFAHQLH 588
Query: 186 GISKSKLRIIVGKHNLNGVDKFEKTFK--VEKAVLHHR--FRKEGTHSNDIAVVKI 237
G ++V ++ G + F + +L+ R + + +AVV
Sbjct: 589 GQ-----YVVVNNYSEKGQN-VGTAFYDVSKDRMLYTRDSSDLQSQGAILLAVVGD 638
>gnl|CDD|238868 cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the
putative arylesterase/acylhydrolase from the rumen
anaerobe Prevotella bryantii XynE. The P. bryantii XynE
gene is located in a xylanase gene cluster. SGNH
hydrolases are a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 204
Score = 28.0 bits (63), Expect = 6.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 70 RAANVKIVGGTSTPYGAYPW 89
A +K++G T TP+ +
Sbjct: 116 HARGIKVIGATITPFEGSGY 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,911,869
Number of extensions: 1775832
Number of successful extensions: 1119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 21
Length of query: 384
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 285
Effective length of database: 6,546,556
Effective search space: 1865768460
Effective search space used: 1865768460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)