RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17339
(384 letters)
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 292 bits (750), Expect = 4e-98
Identities = 93/328 (28%), Positives = 150/328 (45%), Gaps = 80/328 (24%)
Query: 58 TCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVIL 117
CG R H+ + +I+GG+S+ G++PW I + G+ C G+++ ++
Sbjct: 21 ACGRR---HKKRTFLRPRIIGGSSSLPGSHPWLAAIYI------GDSFCAGSLVHTCWVV 71
Query: 118 TAAHCLQGIS-KSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTV 176
+AAHC + + +++G+H N +TF +E
Sbjct: 72 SAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIE----------------------- 108
Query: 177 ILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVK 236
+ I + + +D+ +++
Sbjct: 109 ----------------KYIP----------------------YTLYSVFNPSDHDLVLIR 130
Query: 237 IRG----NIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKV 291
++ +Q+VQPIC+P+ A C + GWG + E++ S++LR A V +
Sbjct: 131 LKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLD-ENVSGYSSSLREALVPL 189
Query: 292 IDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSW 351
+ + C S VYG +I +MLCAGY + DAC GDSGGPLAC+ G L G++SW
Sbjct: 190 VADHKCSSPEVYGA---DISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISW 246
Query: 352 GDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
GDGC + +KPGVYTRV+ Y WINDRI+
Sbjct: 247 GDGCGRLHKPGVYTRVANYVDWINDRIR 274
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 286 bits (733), Expect = 4e-96
Identities = 81/223 (36%), Positives = 129/223 (57%), Gaps = 10/223 (4%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGIS-KSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G+ C G+++ +++AAHC + + +++G+H N +TF +EK + +
Sbjct: 21 GDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTL 80
Query: 222 FRKEGTHSNDIAVVKIRG----NIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAES 276
+ +D+ +++++ +Q+VQPIC+P+ A C + GWG + E+
Sbjct: 81 YSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLD-EN 139
Query: 277 IDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLA 336
+ S++LR A V ++ + C S VYG +I +MLCAGY + DAC GDSGGPLA
Sbjct: 140 VSGYSSSLREALVPLVADHKCSSPEVYGA---DISPNMLCAGYFDCKSDACQGDSGGPLA 196
Query: 337 CKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
C+ G L G++SWGDGC + +KPGVYTRV+ Y WINDRI+
Sbjct: 197 CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 239
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 285 bits (732), Expect = 1e-95
Identities = 91/330 (27%), Positives = 134/330 (40%), Gaps = 78/330 (23%)
Query: 57 MTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVI 116
CG + + KI+GG T PW I R G + CGG+++S +
Sbjct: 11 FQCGQKTLRPRF------KIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWV 64
Query: 117 LTAAHCLQGIS-KSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDT 175
++A HC K + +G+ LN + E F+VE
Sbjct: 65 ISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVE---------------------- 102
Query: 176 VILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKE-GTHSNDIAV 234
+I+ H + + H NDIA+
Sbjct: 103 -----------------NLIL----------------------HKDYSADTLAHHNDIAL 123
Query: 235 VKIR----GNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQNAESIDDISNTLRAATV 289
+KIR + ++ +Q IC+P N C +TG+G +N + L+ V
Sbjct: 124 LKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVV 182
Query: 290 KVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVV 349
K+I C+ YG+ + MLCA D+C GDSGGPL C + GR L+G+V
Sbjct: 183 KLISHRECQQPHYYGS---EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIV 239
Query: 350 SWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
SWG GCA K+KPGVYTRVS++ WI +
Sbjct: 240 SWGRGCALKDKPGVYTRVSHFLPWIRSHTK 269
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 283 bits (727), Expect = 3e-95
Identities = 87/311 (27%), Positives = 128/311 (41%), Gaps = 72/311 (23%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGIS-KSKLRII 134
I+GG T PW I R G + CGG++IS +++A HC K +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 135 VGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRI 194
+G+ LN + E F+VE +
Sbjct: 61 LGRSRLNSNTQGEMKFEVE---------------------------------------NL 81
Query: 195 IVGKHNLNGVDKFEKTFKVEKAVLHHRFRKE-GTHSNDIAVVKIRG----NIEFNQYVQP 249
I+ H + + H NDIA++KIR + ++ +Q
Sbjct: 82 IL----------------------HKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 250 ICIPDRD-NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQ 308
I +P + C +TG+G +N + L+ VK+I C+ YG+
Sbjct: 120 ISLPSMYNDPQFGTSCEITGFGKEN-STDYLYPEQLKMTVVKLISHRECQQPHYYGSE-- 176
Query: 309 NILDSMLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVS 368
+ MLCA D+C GDSGGPL C + GR L+G+VSWG GCA K+KPGVYTRVS
Sbjct: 177 -VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 369 YYTKWINDRIQ 379
++ WI +
Sbjct: 236 HFLPWIRSHTK 246
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 282 bits (724), Expect = 1e-94
Identities = 81/309 (26%), Positives = 128/309 (41%), Gaps = 74/309 (23%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRII 134
IVGG P G PWQV + V G CGG +I+ +++AAHC I L +
Sbjct: 1 IVGGKVCPKGECPWQVLLLVN-----GAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAV 55
Query: 135 VGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRI 194
+G+H+L+ D E++ +V ++
Sbjct: 56 LGEHDLSEHDGDEQSRRVA---------------------------------------QV 76
Query: 195 IVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD 254
I+ + T ++DIA++++ + +V P+C+P+
Sbjct: 77 II----------------------PSTYVPG-TTNHDIALLRLHQPVVLTDHVVPLCLPE 113
Query: 255 RDNAA----ASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNI 310
R + + +V+GWG + L V + C + + NI
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQL--LDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNI 171
Query: 311 LDSMLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYY 370
+ M CAGY +G D+C GDSGGP A G + L+G+VSWG GCA GVYTRVS Y
Sbjct: 172 TEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQY 231
Query: 371 TKWINDRIQ 379
+W+ ++
Sbjct: 232 IEWLQKLMR 240
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 281 bits (722), Expect = 2e-94
Identities = 82/305 (26%), Positives = 127/305 (41%), Gaps = 60/305 (19%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I G G PW + + G+ CGG+++ + I+TAAHCL K
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLN----GQPFCGGSLLGSSWIVTAAHCLHQSLDPKD---- 52
Query: 136 GKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 195
+S S +II
Sbjct: 53 -------------------------------------------PTLRDSDLLSPSDFKII 69
Query: 196 VGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDR 255
+GKH D+ E+ V+ LH ++ T ND+A+V++ + N +V PIC+P+
Sbjct: 70 LGKHWRLRSDENEQHLGVKHTTLHPQYDPN-TFENDVALVELLESPVLNAFVMPICLPEG 128
Query: 256 DNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSML 315
+ +V+GWG Q TL + ++D +TC+ + Y + + M+
Sbjct: 129 PQQEGAM-VIVSGWGKQFL---QRFPETLMEIEIPIVDHSTCQKA--YAPLKKKVTRDMI 182
Query: 316 CAGYLNGGIDACGGDSGGPLAC--KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKW 373
CAG GG DAC GDSGGP+ + G++ L G VSWGD C KK++ GVY+ + + W
Sbjct: 183 CAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDW 242
Query: 374 INDRI 378
I
Sbjct: 243 IQRVT 247
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 281 bits (720), Expect = 3e-94
Identities = 83/229 (36%), Positives = 127/229 (55%), Gaps = 14/229 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
Q + E CGG I+S+ ILTAAHCL + ++ VG N + E +VE
Sbjct: 15 QALLINEENEGFCGGTILSEFYILTAAHCLY--QAKRFKVRVGDRNTEQEEGGEAVHEVE 72
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW----CVVTGWG 270
+ H+RF KE T+ DIAV++++ I F V P C+P+RD A ++ +V+G+G
Sbjct: 73 VVIKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFG 131
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGD 330
+ S L+ V +D+N+C+ S S+ I +M CAGY DAC GD
Sbjct: 132 RT--HEKGEQSTRLKMLEVPYVDRNSCKLS-----SSFIITQNMFCAGYDTKQEDACQGD 184
Query: 331 SGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
SGGP + + ++G+VSWG+GCA+K K G+YT+V+ + KWI+ ++
Sbjct: 185 SGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 277 bits (710), Expect = 9e-93
Identities = 74/223 (33%), Positives = 126/223 (56%), Gaps = 13/223 (5%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ + CGG+I+++ I+TAAHC++ + K+ ++ G+HN+ + E+ V + + HH
Sbjct: 21 KVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHN 78
Query: 222 F-RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAA---ASDWCVVTGWGAQNAESI 277
F T+++DIA++++ + N YV PICI D++ V+GWG
Sbjct: 79 FNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV--FHK 136
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLAC 337
+ L+ V ++D+ TC S + I ++M CAG+ GG D+C GDSGGP
Sbjct: 137 GRSALVLQYLRVPLVDRATCLRS-----TKFTITNNMFCAGFHEGGRDSCQGDSGGPHVT 191
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
++ G L+G++SWG+ CA K K G+YT+VS Y WI ++ ++
Sbjct: 192 EVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL 234
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 276 bits (709), Expect = 2e-92
Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 16/233 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
QV + + CG +I + +LTAAHC+ KL + +G+++L +K+E ++
Sbjct: 15 QVVLLDSKKKLACGAVLIHPSWVLTAAHCMD--ESKKLLVRLGEYDLRRWEKWELDLDIK 72
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-----CVVTGW 269
+ +H + K T NDIA++ + +Q + PIC+PD A +VTGW
Sbjct: 73 EVFVHPNYSKS-TTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGW 131
Query: 270 GAQN---AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDA 326
G + E+ + + L + V+ N C + + ++MLCAG L DA
Sbjct: 132 GYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV-----MSNMVSENMLCAGILGDRQDA 186
Query: 327 CGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
C GDSGGP+ G + L G+VSWG+GC + GVYT+VS Y WI+ I+
Sbjct: 187 CEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR 239
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 276 bits (709), Expect = 2e-92
Identities = 88/317 (27%), Positives = 131/317 (41%), Gaps = 79/317 (24%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGE-HQCGGAIISDTVILTAAHCLQG-ISKSKLRI 133
I GG ++PWQ I + GE CGG +IS IL+AAHC Q L +
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLR 193
I+G+ + E+ F+VE +
Sbjct: 61 ILGRTYRVVPGEEEQKFEVE---------------------------------------K 81
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRG----NIEFNQYVQP 249
IV H F + T+ NDIA+++++ + + V+
Sbjct: 82 YIV----------------------HKEFDDD-TYDNDIALLQLKSDSSRCAQESSVVRT 118
Query: 250 ICIPDRDNA-AASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQ 308
+C+P D C ++G+G S L+ A V++ + C S + +
Sbjct: 119 VCLPPADLQLPDWTECELSGYGKHE-ALSPFYSERLKEAHVRLYPSSRCTSQHLLNRT-- 175
Query: 309 NILDSMLCAGYLNGG------IDACGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPG 362
+ D+MLCAG G DAC GDSGGPL C GR L G++SWG GC +K+ PG
Sbjct: 176 -VTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPG 234
Query: 363 VYTRVSYYTKWINDRIQ 379
VYT+V+ Y WI D ++
Sbjct: 235 VYTKVTNYLDWIRDNMR 251
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 273 bits (701), Expect = 2e-91
Identities = 94/306 (30%), Positives = 135/306 (44%), Gaps = 72/306 (23%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRII 134
IVGGT++ G +PWQV + S T + H CGG+II + ILTAAHC G+ LR+
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQWILTAAHCFYGVESPKILRVY 58
Query: 135 VGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRI 194
G N + + + F V+ I
Sbjct: 59 SGILNQSEIKEDTSFFGVQ---------------------------------------EI 79
Query: 195 IVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD 254
I+ H +++ DIA++K+ + + +PI +P
Sbjct: 80 II----------------------HDQYKMA-ESGYDIALLKLETTVNYTDSQRPISLPS 116
Query: 255 RD-NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDS 313
+ C VTGWG + D I NTL+ A + ++ C+ Y I
Sbjct: 117 KGERNVIYTDCWVTGWGYRKLR--DKIQNTLQKAKIPLVTNEECQKR--YRGH--KITHK 170
Query: 314 MLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKW 373
M+CAGY GG DAC GDSGGPL+CK + L G+ SWG+GCA++ +PGVYT V Y W
Sbjct: 171 MICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDW 230
Query: 374 INDRIQ 379
I ++ Q
Sbjct: 231 ILEKTQ 236
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 273 bits (701), Expect = 2e-91
Identities = 90/306 (29%), Positives = 142/306 (46%), Gaps = 72/306 (23%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRII 134
IVGGT + +G +PWQV +QV+ + + H CGG++I +LTAAHC G+ RI
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQR--HLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIY 58
Query: 135 VGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRI 194
G L+ + K +++ I
Sbjct: 59 SGILELSDITKDTPFSQIK---------------------------------------EI 79
Query: 195 IVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD 254
I+ H ++ ++DIA++K++ +E+ ++ +PI +P
Sbjct: 80 II----------------------HQNYKVS-EGNHDIALIKLQAPLEYTEFQKPISLPS 116
Query: 255 RD-NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDS 313
+ + C VTGWG + +I N L+ + ++ C+ Y + I
Sbjct: 117 KGDTSTIYTNCWVTGWGFS--KEKGEIQNILQKVNIPLVTNEECQKR--YQDY--KITQR 170
Query: 314 MLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKW 373
M+CAGY GG DAC GDSGGPL CK G + L G+ SWG+GCA++ +PGVYT+V+ Y W
Sbjct: 171 MVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDW 230
Query: 374 INDRIQ 379
I ++ Q
Sbjct: 231 ILEKTQ 236
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 272 bits (699), Expect = 4e-91
Identities = 86/227 (37%), Positives = 126/227 (55%), Gaps = 14/227 (6%)
Query: 155 QV---RSSTGQGEHQCGGAIISDTVILTAAHCLQGI---SKSKLRIIVGKHNLNGVDKFE 208
Q+ + G H CG +I ++ +TA HC+ G + S L+I+ G+ +++ + E
Sbjct: 15 QLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSE 74
Query: 209 KTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTG 268
+ V K +LH F NDI+++K+ G++ FN V PI +P++ + A D +VTG
Sbjct: 75 QIITVSKIILHENFDYN-LLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGD-VIVTG 132
Query: 269 WGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACG 328
WG + + L+ TV ++ CR+ YG ILDSM+CAG GG D+C
Sbjct: 133 WGTT--SEGGNTPDVLQKVTVPLVSDEDCRAD--YGADE--ILDSMICAGVPEGGKDSCQ 186
Query: 329 GDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
GDSGGPLA G L+G+VSWG GCA+ PGVYT VSY+ WI
Sbjct: 187 GDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIK 233
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 273 bits (699), Expect = 2e-90
Identities = 88/311 (28%), Positives = 128/311 (41%), Gaps = 69/311 (22%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSS-TGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRI 133
I+GG +GA+PW V +Q+ + + H CGG++++ +LTAAHC + K + R+
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 134 IVGKHNLNGVDKFE-KTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKL 192
I G + K E V
Sbjct: 61 IFGAKEVEWGTNKPVKPPLQERYVE----------------------------------- 85
Query: 193 RIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICI 252
+II+ H ++ + +NDIA++KI + ++ P C+
Sbjct: 86 KIII----------------------HEKYSAS-SEANDIALMKITPPVTCGHFIGPGCL 122
Query: 253 PDRDNA--AASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNI 310
P C V GWG E+ S L+ A V +ID C S+ Y I
Sbjct: 123 PQFRAGPPRVPQTCWVAGWGFLQ-ENARRTSPMLQEARVDLIDLGLCNSTRWYNGR---I 178
Query: 311 LDSMLCAGYLNGGIDACGGDSGGPLACK--IGGRFVLSGVVSWGDGCAKKNKPGVYTRVS 368
+ +CAGY G ID C GDSGGPL CK +V+ G+ SWG GCA+ +PGVYT
Sbjct: 179 RSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTW 238
Query: 369 YYTKWINDRIQ 379
Y WI +I
Sbjct: 239 SYLNWIASKIG 249
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 269 bits (689), Expect = 1e-89
Identities = 80/307 (26%), Positives = 129/307 (42%), Gaps = 75/307 (24%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRI 133
IVGG+ GA+PW V + CG +++S +++AAHC+ G + SK
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYD-----DRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTA 55
Query: 134 IVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLR 193
I+G H + + + V +
Sbjct: 56 ILGLHMKSNLTSPQ---TVPRLID-----------------------------------E 77
Query: 194 IIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP 253
I++ + + + NDIA++ + + + Y+QPI +P
Sbjct: 78 IVI----------------------NPHYNRR-RKDNDIAMMHLEFKVNYTDYIQPISLP 114
Query: 254 DRDNAAASD-WCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILD 312
+ + C + GWG ++ L+ A V ++ C+ NI +
Sbjct: 115 EENQVFPPGRNCSIAGWGTV--VYQGTTADILQEADVPLLSNERCQQQ--MPEY--NITE 168
Query: 313 SMLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTK 372
+M+CAGY GGID+C GDSGGPL C+ R+ L+GV S+G CA N+PGVY RVS +T+
Sbjct: 169 NMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTE 228
Query: 373 WINDRIQ 379
WI +
Sbjct: 229 WIQSFLH 235
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 269 bits (690), Expect = 2e-89
Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 6/226 (2%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGIS-KSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
+G H CGG+++S+ +L+AAHC K + +G H L+ + K ++ + H
Sbjct: 21 EGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHP 80
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDD 279
+ +E DIA++++ I F++Y++PI +P + C VTGWG
Sbjct: 81 SYLQE-GSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLL 139
Query: 280 ISNTLRAATVKVIDQNTCRSSAVYG---NSNQNILDSMLCAGYLNGGIDACGGDSGGPLA 336
L+ V +I + TC S + + M+CAGY+ GG DAC GDSGGPL+
Sbjct: 140 TPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLS 199
Query: 337 CKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQ 382
C + G + L+G+VSWGD C +N+PGVYT S Y WI ++ LQ
Sbjct: 200 CPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTELQ 245
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 266 bits (682), Expect = 1e-88
Identities = 91/307 (29%), Positives = 128/307 (41%), Gaps = 74/307 (24%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG +PWQV ++ +SS H CGG+II+D ++ AAHC+QG + + + ++V
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSS---DSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVV 57
Query: 136 GKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 195
G+H+ + +T V+ I
Sbjct: 58 GEHDSSAASTVRQTHDVD---------------------------------------SIF 78
Query: 196 VGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDR 255
V + + T ND++V+K I F+ V PIC PD
Sbjct: 79 V----------------------NENYDPA-TLENDVSVIKTAVAITFDINVGPICAPDP 115
Query: 256 DNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSML 315
N +GWG N LR T+ + C + Y + I D M+
Sbjct: 116 ANDYVYRKSQCSGWGTIN-SGGVCCPAVLRYVTLNITTNAFCDAV--YTSD--TIYDDMI 170
Query: 316 CAGYLNG--GIDACGGDSGGPLACKIG-GRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTK 372
CA G D+C GDSGGPL+ K G G F L G+VSWG GCA PGVY+RV ++
Sbjct: 171 CATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPGVYSRVGFHAG 229
Query: 373 WINDRIQ 379
WI D I
Sbjct: 230 WITDTIT 236
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 266 bits (681), Expect = 2e-88
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 19/230 (8%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKT 210
V ++ R G H CGG +IS +LTAAHCL+ + S ++I+G H ++ +
Sbjct: 33 VSLRTRF----GMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQE 88
Query: 211 FKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGW 269
+V + L DIA++K+ V P C+P + A C +TGW
Sbjct: 89 IEVSRLFLE-------PTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGW 141
Query: 270 GAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGG 329
G + L+ A + VI+ C + + LCAG+L GG D+C G
Sbjct: 142 GETQG---TFGAGLLKEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGTDSCQG 195
Query: 330 DSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
D+GGPL C +++L GV SWG GCA+ NKPGVY RVS + WI ++
Sbjct: 196 DAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 245
Score = 90.4 bits (225), Expect = 4e-21
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 56 AMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTV 115
+ CG V + ++VGG ++PWQV ++ R G H CGG +IS
Sbjct: 1 SFDCGKPQV---EPKKCPGRVVGGCVAHPHSWPWQVSLRTRF----GMHFCGGTLISPEW 53
Query: 116 ILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKVE 153
+LTAAHCL+ + S ++I+G H ++ + +V
Sbjct: 54 VLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVS 92
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 263 bits (675), Expect = 1e-87
Identities = 91/225 (40%), Positives = 122/225 (54%), Gaps = 14/225 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
Q + E CGG I+S+ ILTAAHCL + ++ VG N + E +VE
Sbjct: 15 QALLINEENEGFCGGTILSEFYILTAAHCLY--QAKRFKVRVGDRNTEQEEGGEAVHEVE 72
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNA 274
+ H+RF KE T+ DIAV++++ I F V P +P A + C+++GWG A
Sbjct: 73 VVIKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPASLPTAPPATGTK-CLISGWGNT-A 129
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGP 334
S D + L+ V+ Q C +S Y I +M C G+L GG D+C GDSGGP
Sbjct: 130 SSGADYPDELQCLDAPVLSQAKCEAS--YPGK---ITSNMFCVGFLEGGKDSCQGDSGGP 184
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ C L GVVSWGDGCA+KNKPGVYT+V Y KWI + I
Sbjct: 185 VVC----NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225
Score = 84.1 bits (209), Expect = 5e-19
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + G PWQ + E CGG I+S+ ILTAAHCL + ++ V
Sbjct: 1 IVGGYNCKDGEVPWQALLINEE----NEGFCGGTILSEFYILTAAHCLY--QAKRFKVRV 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
G N + E +VE
Sbjct: 55 GDRNTEQEEGGEAVHEVE 72
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 263 bits (674), Expect = 3e-87
Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 9/219 (4%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
G H CGG +I +LTAAHC +K +++G H+L+ + ++T +++K +
Sbjct: 23 GGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFS 82
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDI 280
R + SNDI +VK++ + N++V+ + I + + + C VTGWGA
Sbjct: 83 RVTSD-PQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGAT-DPDSLRP 140
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
S+TLR TV V+ + C S + Y N + I M+CAG G D+C GD+GGPL CK
Sbjct: 141 SDTLREVTVTVLSRKLCNSQSYY-NGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICK-- 197
Query: 341 GRFVLSGVVSWGDGCAKKNKPGVYTRVS-YYTKWINDRI 378
V +VS G C KPG+YT ++ Y WI +
Sbjct: 198 --GVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234
Score = 84.5 bits (210), Expect = 4e-19
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 74 VKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLR 132
++I+GG + P+ IQ G H CGG +I +LTAAHC +K
Sbjct: 1 MEIIGGKEVSPHSRPFMASIQYG-----GHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPT 55
Query: 133 IIVGKHNLNGVDKFEKTFKVE 153
+++G H+L+ + ++T +++
Sbjct: 56 VVLGAHSLSKNEASKQTLEIK 76
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 264 bits (676), Expect = 6e-87
Identities = 88/331 (26%), Positives = 133/331 (40%), Gaps = 89/331 (26%)
Query: 69 QRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQ---- 124
+ + +IV G+ G PWQV + +S E CG ++ISD +LTAAHCL
Sbjct: 24 ESYIDGRIVEGSDAEIGMSPWQVMLFRKSP---QELLCGASLISDRWVLTAAHCLLYPPW 80
Query: 125 --GISKSKLRIIVGKHNLNGVDK-FEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAA 181
+++ L + +GKH+ ++ EK +E
Sbjct: 81 DKNFTENDLLVRIGKHSRTRYERNIEKISMLE---------------------------- 112
Query: 182 HCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNI 241
+I + H R+ DIA++K++ +
Sbjct: 113 -----------KIYI----------------------HPRYNWRENLDRDIALMKLKKPV 139
Query: 242 EFNQYVQPICIPDRDNA----AASDWCVVTGWGA----QNAESIDDISNTLRAATVKVID 293
F+ Y+ P+C+PDR+ A A VTGWG A + L+ + +++
Sbjct: 140 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 199
Query: 294 QNTCRSSAVYGNSNQNILDSMLCAGYL---NGGIDACGGDSGGPLACK--IGGRFVLSGV 348
+ C+ S + I D+M CAGY DAC GDSGGP K R+ G+
Sbjct: 200 RPVCKDS-----TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGI 254
Query: 349 VSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
VSWG+GC + K G YT V KWI I
Sbjct: 255 VSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 263 bits (673), Expect = 1e-86
Identities = 77/329 (23%), Positives = 125/329 (37%), Gaps = 71/329 (21%)
Query: 58 TCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVIL 117
CG +V KI+ G T +PW I ++S+ + CGG++I++ I+
Sbjct: 13 DCGYQVEAD--------KILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIV 64
Query: 118 TAAHCLQGISKSKL----RIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIIS 173
TAAHC+ G + ++ +G+ N G I
Sbjct: 65 TAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCY-------------GAVRVCVPDKPI- 110
Query: 174 DTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG-THSNDI 232
+E+ + H + +DI
Sbjct: 111 ------------------------------------DLGIEETIQHPDYVDGSKDRYHDI 134
Query: 233 AVVKIRGNIEFNQYVQPICIPD-RDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKV 291
A++++ +EF Y++P+C+P + V GWG S + V V
Sbjct: 135 ALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQY---STIKQKLAVPV 191
Query: 292 IDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACK-IGGRFVLSGVVS 350
+ C + +G + + S LCAG D+CGGDSGGPL + +F L G+VS
Sbjct: 192 VHAEQCAKT--FGAAGVRVRSSQLCAGG-EKAKDSCGGDSGGPLLAERANQQFFLEGLVS 248
Query: 351 WGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+G C + PG+YT+V Y WI I+
Sbjct: 249 FGATCGTEGWPGIYTKVGKYRDWIEGNIR 277
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 261 bits (669), Expect = 1e-86
Identities = 88/306 (28%), Positives = 123/306 (40%), Gaps = 79/306 (25%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRII 134
IVGGT G +PWQ +Q G H+CG +I+ T +++AAHC ++
Sbjct: 1 IVGGTEVEEGEWPWQASLQWD-----GSHRCGATLINATWLVSAAHCFTTYKNPARWTAS 55
Query: 135 VGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRI 194
G + + RI
Sbjct: 56 FGVTIKPS----KMKRGLR---------------------------------------RI 72
Query: 195 IVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD 254
IV H +++ +H DI++ ++ + + V +C+PD
Sbjct: 73 IV----------------------HEKYKHP-SHDYDISLAELSSPVPYTNAVHRVCLPD 109
Query: 255 RDNA-AASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDS 313
D VTG+GA ++ N LR A V +ID TC Y ++ I
Sbjct: 110 ASYEFQPGDVMFVTGFGAL--KNDGYSQNHLRQAQVTLIDATTCNEPQAYNDA---ITPR 164
Query: 314 MLCAGYLNGGIDACGGDSGGPLACK-IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTK 372
MLCAG L G DAC GDSGGPL + L+G+VSWGD CAK NKPGVYTRV+
Sbjct: 165 MLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRD 224
Query: 373 WINDRI 378
WI +
Sbjct: 225 WITSKT 230
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 274 bits (701), Expect = 1e-86
Identities = 98/327 (29%), Positives = 143/327 (43%), Gaps = 72/327 (22%)
Query: 55 RAMTCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDT 114
T +++E +IVGGT++ G +PWQV + S T + H CGG+II +
Sbjct: 367 SGYTLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQR--HLCGGSIIGNQ 424
Query: 115 VILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIIS 173
ILTAAHC G+ LR+ G N + + + F V+
Sbjct: 425 WILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQ-------------------- 464
Query: 174 DTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIA 233
II+ H ++ K DIA
Sbjct: 465 -------------------EIII----------------------HDQY-KMAESGYDIA 482
Query: 234 VVKIRGNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQNAESIDDISNTLRAATVKVI 292
++K+ + + +PIC+P + + C VTGWG + D I NTL+ A + ++
Sbjct: 483 LLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLR--DKIQNTLQKAKIPLV 540
Query: 293 DQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSWG 352
C+ Y I M+CAGY GG DAC GDSGGPL+CK + L G+ SWG
Sbjct: 541 TNEECQKR--YRGH--KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWG 596
Query: 353 DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+GCA++ +PGVYT V Y WI ++ Q
Sbjct: 597 EGCAQRERPGVYTNVVEYVDWILEKTQ 623
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 261 bits (669), Expect = 1e-86
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 14/229 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQG--ISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLH 219
G GA++ D +LTAAH + S L I +G E +H
Sbjct: 19 LGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRL--SPHYTQAWSEAVFIH 76
Query: 220 HRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA---AASDWCVVTGWGAQNAES 276
+ + NDIA++K+ + N + PIC+P ++ D +GWG
Sbjct: 77 EGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-- 134
Query: 277 IDDISNTLRAATVKVIDQNTCRSS-AVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPL 335
++ L + ++D C ++ ++ +MLCAG +GG D+C GDSGG L
Sbjct: 135 -GFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 193
Query: 336 ACKI--GGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQML 381
R+ + G+VSWG C + + GVYT+V Y WI + I
Sbjct: 194 VFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISDF 242
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 262 bits (671), Expect = 1e-86
Identities = 88/324 (27%), Positives = 130/324 (40%), Gaps = 89/324 (27%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG------ISKS 129
IV G+ G PWQV + +S E CG ++ISD +LTAAHCL +++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSP---QELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 130 KLRIIVGKHNLNGVDK-FEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGIS 188
L + +GKH+ ++ EK +E
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLE----------------------------------- 82
Query: 189 KSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQ 248
+I + H R+ DIA++K++ + F+ Y+
Sbjct: 83 ----KIYI----------------------HPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 249 PICIPDRDNA----AASDWCVVTGWGA----QNAESIDDISNTLRAATVKVIDQNTCRSS 300
P+C+PDR+ A A VTGWG A + L+ + ++++ C+ S
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 301 AVYGNSNQNILDSMLCAGYL---NGGIDACGGDSGGPLACK--IGGRFVLSGVVSWGDGC 355
+ I D+M CAGY DAC GDSGGP K R+ G+VSWG+GC
Sbjct: 177 -----TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGC 231
Query: 356 AKKNKPGVYTRVSYYTKWINDRIQ 379
+ K G YT V KWI I
Sbjct: 232 DRDGKYGFYTHVFRLKKWIQKVID 255
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 265 bits (679), Expect = 9e-86
Identities = 90/304 (29%), Positives = 139/304 (45%), Gaps = 33/304 (10%)
Query: 97 SSTGQGEHQCGG-AIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEIQ 155
++ G GE CG + + S RI+ G G ++V +
Sbjct: 129 ATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIG----MSPWQVMLF 184
Query: 156 VRSSTGQGEHQCGGAIISDTVILTAAHCLQ------GISKSKLRIIVGKHNLNGVDK-FE 208
+S E CG ++ISD +LTAAHCL +++ L + +GKH+ ++ E
Sbjct: 185 RKSP---QELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIE 241
Query: 209 KTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA----AASDWC 264
K +EK +H R+ DIA++K++ + F+ Y+ P+C+PDR+ A A
Sbjct: 242 KISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKG 301
Query: 265 VVTGWGAQNAESIDDI----SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYL 320
VTGWG ++ + L+ + ++++ C+ S + I D+M CAGY
Sbjct: 302 RVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-----TRIRITDNMFCAGYK 356
Query: 321 ---NGGIDACGGDSGGPLACK--IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
DAC GDSGGP K R+ G+VSWG+GC + K G YT V KWI
Sbjct: 357 PDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQ 416
Query: 376 DRIQ 379
I
Sbjct: 417 KVID 420
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 259 bits (663), Expect = 1e-85
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 16/224 (7%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGV--DKFEKTFKVEKAVLH 219
+ +H CGG++I ++ +LTA C +G H+++G +K ++ V + V
Sbjct: 20 RNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYG 79
Query: 220 HRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESID 278
+D+ ++K+ + +V I +P+ C V GWG
Sbjct: 80 -------PEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGL---I 129
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACK 338
+ LR A + ++ C + + +S +CAG G C GD GGPL C+
Sbjct: 130 NYDGLLRVAHLYIMGNEKCSQHHRGKVT---LNESEICAGAEKIGSGPCEGDYGGPLVCE 186
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQMLQ 382
++ GV+ G GCA N+PG++ RV+YY KWI+ I +
Sbjct: 187 QHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYK 230
Score = 78.8 bits (195), Expect = 5e-17
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+V G T W V ++ R +H CGG++I ++ +LTA C +
Sbjct: 1 VVNGIPTR-TNIGWMVSLRYR-----NKHICGGSLIKESWVLTARQCFPSRDLKDYEAWL 54
Query: 136 GKHNLNGV--DKFEKTFKVE 153
G H+++G +K ++ V
Sbjct: 55 GIHDVHGRGDEKCKQVLNVS 74
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 258 bits (662), Expect = 1e-85
Identities = 80/232 (34%), Positives = 127/232 (54%), Gaps = 13/232 (5%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTF 211
+ +Q RS H CGG +I ++TAAHC+ + R++VG+HNLN + E+
Sbjct: 16 ISLQYRSG-SSWAHTCGGTLIRQNWVMTAAHCVD--RELTFRVVVGEHNLNQNNGTEQYV 72
Query: 212 KVEKAVLHHRFRKEG-THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASD-WCVVTGW 269
V+K V+H + + DIA++++ ++ N YVQ +P A++ C +TGW
Sbjct: 73 GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGW 132
Query: 270 GAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGG 329
G + ++ TL+ A + +D C SS+ +G++ + +SM+CAG +G C G
Sbjct: 133 G--LTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGST---VKNSMVCAGG-DGVRSGCQG 186
Query: 330 DSGGPLACKIGGRFVLSGVVSWGD--GCAKKNKPGVYTRVSYYTKWINDRIQ 379
DSGGPL C + G++ + GV S+ GC KP V+TRVS Y WIN+ I
Sbjct: 187 DSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA 238
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 259 bits (663), Expect = 1e-85
Identities = 87/325 (26%), Positives = 136/325 (41%), Gaps = 77/325 (23%)
Query: 59 CGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILT 118
CG+ + + ++VGG ++PWQ+ +Q H CGG +I+ +LT
Sbjct: 1 CGAPIFQPNL----SARVVGGEDAIPHSWPWQISLQYLR-DNTWRHTCGGTLITPNHVLT 55
Query: 119 AAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVIL 178
AAHC+ + R+ +GK+NL D + + + V
Sbjct: 56 AAHCIS--NTLTYRVALGKNNLEVED---EAGSLYVGVD--------------------- 89
Query: 179 TAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIR 238
I V H ++ NDIA++K+
Sbjct: 90 --------------TIFV----------------------HEKWNSF-LVRNDIALIKLA 112
Query: 239 GNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTC 297
+E +Q C+P + C VTGWG I+ L+ V+D TC
Sbjct: 113 ETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTN--GPIAAELQQGLQPVVDYATC 170
Query: 298 RSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSWGDG--C 355
+G + + ++M+CAG +G I AC GDSGGPL C+ G++ + G+VS+G G C
Sbjct: 171 SQRDWWGTT---VKETMVCAGG-DGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSC 226
Query: 356 AKKNKPGVYTRVSYYTKWINDRIQM 380
KP V+TRVS Y WIN ++Q+
Sbjct: 227 NTFKKPTVFTRVSAYIDWINQKLQL 251
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 258 bits (662), Expect = 2e-85
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQG-----ISKSKLRIIVGKHNLNGVDKFEKTFKVEKA 216
+ GGA++ D ILTAAH L S + L + +G N+ + K + +
Sbjct: 19 NIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMK-LGNHPIRRV 77
Query: 217 VLHHRFRKEG--THSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQN 273
+H +R++ DIA++++ ++ + PIC+PD D V+G+G
Sbjct: 78 SVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME 137
Query: 274 AESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGG 333
+ I++ LR + V + C + N +M CAG+ + DAC GDSGG
Sbjct: 138 ----EKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGG 193
Query: 334 PLACKI--GGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
A + R+V +G+VSWG GC++ G YT+V Y WI ++
Sbjct: 194 VFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEME 239
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 258 bits (661), Expect = 2e-85
Identities = 79/322 (24%), Positives = 135/322 (41%), Gaps = 80/322 (24%)
Query: 59 CGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILT 118
CG + +P + +IV G G++PWQV +Q ++ G H CGG++I++ ++T
Sbjct: 1 CGVPAI--QPVLSGLSRIVNGEEAVPGSWPWQVSLQDKT----GFHFCGGSLINENWVVT 54
Query: 119 AAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVIL 178
AAHC + ++ G+ + + + K+
Sbjct: 55 AAHC---GVTTSDVVVAGEFDQGSSSEKIQKLKIA------------------------- 86
Query: 179 TAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIR 238
++ + ++ T +NDI ++K+
Sbjct: 87 --------------KVFK----------------------NSKYNSL-TINNDITLLKLS 109
Query: 239 GNIEFNQYVQPICIPDR-DNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTC 297
F+Q V +C+P D+ AA CV TGWG + + + L+ A++ ++ C
Sbjct: 110 TAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTN-ANTPDRLQQASLPLLSNTNC 168
Query: 298 RSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSWGDGCAK 357
+ +G I D+M+CAG G+ +C GDSGGPL CK G + L G+VSWG
Sbjct: 169 KKY--WGTK---IKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCS 221
Query: 358 KNKPGVYTRVSYYTKWINDRIQ 379
+ PGVY RV+ W+ +
Sbjct: 222 TSTPGVYARVTALVNWVQQTLA 243
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 262 bits (672), Expect = 2e-85
Identities = 96/333 (28%), Positives = 138/333 (41%), Gaps = 92/333 (27%)
Query: 59 CGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILT 118
CG R + + +IVGG T G +PWQV ++ G H CGG+++S +LT
Sbjct: 108 CGRRKLPVD-------RIVGGRDTSLGRWPWQVSLRYD-----GAHLCGGSLLSGDWVLT 155
Query: 119 AAHCLQGISK--SKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTV 176
AAHC ++ S+ R+ G +++ V+
Sbjct: 156 AAHCFPERNRVLSRWRVFAGAVAQASPH------GLQLGVQ------------------- 190
Query: 177 ILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG-----THSND 231
++ H + +SND
Sbjct: 191 ----------------AVVY----------------------HGGYLPFRDPNSEENSND 212
Query: 232 IAVVKIRGNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQNAESIDDISNTLRAATVK 290
IA+V + + +Y+QP+C+P A C VTGWG + + L+ A V
Sbjct: 213 IALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNT--QYYGQQAGVLQEARVP 270
Query: 291 VIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG----GRFVLS 346
+I + C + YGN I M CAGY GGIDAC GDSGGP C+ R+ L
Sbjct: 271 IISNDVCNGADFYGN---QIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLC 327
Query: 347 GVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
G+VSWG GCA KPGVYT+VS + +WI I+
Sbjct: 328 GIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 257 bits (658), Expect = 6e-85
Identities = 87/311 (27%), Positives = 131/311 (42%), Gaps = 80/311 (25%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK------S 129
+VGGT G +PWQV + H CG ++IS +++AAHC +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALG----QGHICGASLISPNWLVSAAHCYIDDRGFRYSDPT 56
Query: 130 KLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK 189
+ +G H+ + E +++
Sbjct: 57 QWTAFLGLHDQSQR---SAPGVQERRLK-------------------------------- 81
Query: 190 SKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQP 249
RII H F T DIA++++ E++ V+P
Sbjct: 82 ---RIIS----------------------HPFFNDF-TFDYDIALLELEKPAEYSSMVRP 115
Query: 250 ICIPDRD-NAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQ 308
I +PD A VTGWG + + L+ ++VI+Q TC + Q
Sbjct: 116 ISLPDASHVFPAGKAIWVTGWGHT--QYGGTGALILQKGEIRVINQTTCENL--L---PQ 168
Query: 309 NILDSMLCAGYLNGGIDACGGDSGGPLAC-KIGGRFVLSGVVSWGDGCAKKNKPGVYTRV 367
I M+C G+L+GG+D+C GDSGGPL+ + GR +GVVSWGDGCA++NKPGVYTR+
Sbjct: 169 QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRL 228
Query: 368 SYYTKWINDRI 378
+ WI +
Sbjct: 229 PLFRDWIKENT 239
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 255 bits (653), Expect = 4e-84
Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 13/220 (5%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G H CGG ++ +LTAAHCL ++LR+++G H L D TF ++ A+ H R
Sbjct: 21 NGSHLCGGVLVHPKWVLTAAHCLAQ-RMAQLRLVLGLHTL---DSPGLTFHIKAAIQHPR 76
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDDI 280
++ ND+A++++ G ++ ++ ++P+ +P + AA C + GWG + +
Sbjct: 77 YKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGG--RL 134
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
S LR ++V+D C +S + ++ SM+C + C GDSGGPL C
Sbjct: 135 SRVLRELDLQVLDTRMCNNSRFWNG---SLSPSMVCLAADSKDQAPCKGDSGGPLVCG-- 189
Query: 341 GRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRIQ 379
VL+GV+S+ C KP V T V+ Y WI
Sbjct: 190 KGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTG 229
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 254 bits (651), Expect = 4e-84
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 15/215 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G CGG++++ +LTAAHC+ G ++S +I G + T + +H
Sbjct: 21 NGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSG---GITSSLSSVRVHPS 77
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNAAASDWCVVTGWGAQNAESIDDI 280
+ ++ND+A++K+ +I + + + A V GWGA +E
Sbjct: 78 YS---GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGAT-SEGGSST 133
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
L TV ++ + TCR+ YG S I + M CAG +GG D+C GDSGGP+
Sbjct: 134 PVNLLKVTVPIVSRATCRAQ--YGTSA--ITNQMFCAGVSSGGKDSCQGDSGGPIVD--- 186
Query: 341 GRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWIN 375
L G VSWG+GCA+ N GVY V +I+
Sbjct: 187 SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFID 221
Score = 87.6 bits (218), Expect = 2e-20
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGGTS G +P+ V I G CGG++++ +LTAAHC+ G ++S +I
Sbjct: 1 IVGGTSASAGDFPFIVSISRN-----GGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRA 55
Query: 136 GKHNLNG 142
G +
Sbjct: 56 GSLSRTS 62
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 253 bits (650), Expect = 6e-84
Identities = 77/218 (35%), Positives = 122/218 (55%), Gaps = 16/218 (7%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G H CGG++I+ +++AAHC + S +++ +G+ N+N V+ E+ K+++H
Sbjct: 20 SGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDIS 281
+ T +NDI ++K++ N V I +P +A + C+++GWG S
Sbjct: 76 YNSN-TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQ-CLISGWGNT-KSSGTSYP 132
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGG 341
+ L+ ++ ++C+S+ Y I +M CAGYL GG D+C GDSGGP+ C G
Sbjct: 133 DVLKCLKAPILSDSSCKSA--YPGQ---ITSNMFCAGYLEGGKDSCQGDSGGPVVCS--G 185
Query: 342 RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ G+VSWG GCA+KNKPGVYT+V Y WI I
Sbjct: 186 KLQ--GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221
Score = 79.5 bits (197), Expect = 2e-17
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P+QV + G H CGG++I+ +++AAHC + S +++ +
Sbjct: 1 IVGGYTCGANTVPYQVSLN------SGYHFCGGSLINSQWVVSAAHCYK----SGIQVRL 50
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+ N+N V+ E+
Sbjct: 51 GEDNINVVEGNEQFISAS 68
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 254 bits (650), Expect = 7e-84
Identities = 68/218 (31%), Positives = 95/218 (43%), Gaps = 16/218 (7%)
Query: 164 EHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
CGGA+ + ++LTAAHC+ G + + G +L + K + F
Sbjct: 19 SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSS--AVKVRSTKVLQAPGF 76
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISN 282
KE T+ D A++K+ I P A V GWGA
Sbjct: 77 TKE-TYGKDWALIKLAQPINQ-----PTLKIATTTAYNQGTFTVAGWGAN--REGGSQQR 128
Query: 283 TLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKI-GG 341
L A V + CRSS+ + + + M+CAGY D C GDSGGP+ K
Sbjct: 129 YLLKANVPFVSDAACRSSSSFIL----VANEMICAGYDTKQEDTCQGDSGGPMFRKDNAD 184
Query: 342 RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+V G+VSWG+GCA+K K GVYT VS + I +
Sbjct: 185 EWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAAR 222
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 257 bits (658), Expect = 8e-84
Identities = 79/331 (23%), Positives = 124/331 (37%), Gaps = 89/331 (26%)
Query: 59 CGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILT 118
CG V E +I+GG G +PWQV + + GGA++ D ILT
Sbjct: 77 CGKPVNPVEQ----RQRIIGGQKAKMGNFPWQVFTNIH-------GRGGGALLGDRWILT 125
Query: 119 AAHCLQG-----ISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIIS 173
AAH L S + L + +G N+ + K +
Sbjct: 126 AAHTLYPKEHEAQSNASLDVFLGHTNVEELMK-LGNHPIR-------------------- 164
Query: 174 DTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG--THSND 231
R+ V H +R++ D
Sbjct: 165 -------------------RVSV----------------------HPDYRQDESYNFEGD 183
Query: 232 IAVVKIRGNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQNAESIDDISNTLRAATVK 290
IA++++ ++ + PIC+PD D V+G+G + I++ LR +
Sbjct: 184 IALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME----EKIAHDLRFVRLP 239
Query: 291 VIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKI--GGRFVLSGV 348
V + C + N +M CAG+ + DAC GDSGG A + R+V +G+
Sbjct: 240 VANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGI 299
Query: 349 VSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
VSWG GC++ G YT+V Y WI ++
Sbjct: 300 VSWGIGCSR--GYGFYTKVLNYVDWIKKEME 328
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 253 bits (649), Expect = 1e-83
Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 14/231 (6%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTF 211
+ +Q +S H CGG++I ++TAAHC+ S R+++G+HNLN + E+
Sbjct: 16 ISLQYKSG-SSYYHTCGGSLIRQGWVMTAAHCVD--SARTWRVVLGEHNLNTNEGKEQIM 72
Query: 212 KVEKAVLHHRFRKEG-THSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGW 269
V +H + + DIA++++ N VQ +P + ++ C +TGW
Sbjct: 73 TVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGW 132
Query: 270 GAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGG 329
G + +S++L+ A + +D TC SS +G++ + +M+CAG G C G
Sbjct: 133 G--KTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGST---VKTTMVCAG--GGANSGCNG 185
Query: 330 DSGGPLACKIGGRFVLSGVVSW--GDGCAKKNKPGVYTRVSYYTKWINDRI 378
DSGGPL C++ G + + GV S+ GC KP V+TRVS Y W+N +
Sbjct: 186 DSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 251 bits (644), Expect = 4e-83
Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 17/218 (7%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G H CGG+++++ +++AAHC KS++ + +G+HN+ + E+ + + H
Sbjct: 20 SGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPN 75
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDIS 281
+ NDI ++K+ N YVQP+ +P A + C V+GWG N S S
Sbjct: 76 YSSY-NIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM-CTVSGWG--NTMSSTADS 131
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGG 341
N L+ + ++ + C +S Y I ++M CAGYL GG D+C GDSGGP+ C G
Sbjct: 132 NKLQCLNIPILSYSDCNNS--YPGM---ITNAMFCAGYLEGGKDSCQGDSGGPVVCN--G 184
Query: 342 RFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
GVVSWG GCA+ PGVY +V + W+ +
Sbjct: 185 ELQ--GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220
Score = 79.1 bits (196), Expect = 3e-17
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + P QV + G H CGG+++++ +++AAHC KS++ + +
Sbjct: 1 IVGGYECKAYSQPHQVSLN------SGYHFCGGSLVNENWVVSAAHCY----KSRVEVRL 50
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+HN+ + E+
Sbjct: 51 GEHNIKVTEGSEQFISSS 68
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 252 bits (645), Expect = 4e-83
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 13/220 (5%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ CGG+I++ ++TAA C+ G S + I G + T + K + R
Sbjct: 21 DEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYRTT----KGTSVMAKKIYIVR 76
Query: 222 FRKEGTHSNDIAVVKIRGNIEFN-QYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDD 279
+ T N+ AV++ I+ + + + I +P + +V+GWG+ N +
Sbjct: 77 YHPL-TMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTN-FKSLE 134
Query: 280 ISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKI 339
S L A V+D+ +C +++ I D + CAG GD+G P
Sbjct: 135 YSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQN- 193
Query: 340 GGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
L GV S+ P V+ RV YY I D I
Sbjct: 194 ---GTLVGVASYISSMP-SEFPSVFLRVGYYVLDIKDIIS 229
Score = 86.9 bits (216), Expect = 5e-20
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + PW V + V + CGG+I++ ++TAA C+ G S + I
Sbjct: 1 IIGGKKSDITKEPWAVGVLVD-----EKPFCGGSILTANFVITAAQCVDGTKPSDISIHY 55
Query: 136 GKHNLN 141
G
Sbjct: 56 GSSYRT 61
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 251 bits (644), Expect = 8e-83
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 13/230 (5%)
Query: 155 QV--RSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFK 212
Q+ + +G H CG +++S T L+A+HC+ G+ + +R+I G + +T
Sbjct: 15 QLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDTSG-TQTAN 73
Query: 213 VEKAVLHHRF-RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-AASDWCVVTGWG 270
V+ +H + ++SNDIA++ + +I +Q +P +N A CV++GWG
Sbjct: 74 VDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWG 133
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGD 330
+ +++ + L+ +++ VI C ++ + G NI D+ +C G AC GD
Sbjct: 134 RT--DGTNNLPDILQKSSIPVITTAQCTAA-MVGVGGANIWDNHICVQDPAGNTGACNGD 190
Query: 331 SGGPLACKIGGRFVLSGVVSW----GDGCAKKNKPGVYTRVSYYTKWIND 376
SGGPL C G + GV SW G G + P VYTRVS Y WI D
Sbjct: 191 SGGPLNCP-DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD 239
Score = 89.2 bits (222), Expect = 9e-21
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
++GGT+ G +PWQ+ Q +S G H CG +++S T L+A+HC+ G+ + +R+I
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQS--GSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIA 58
Query: 136 GKHNLNGVD 144
G +
Sbjct: 59 GLWQQSDTS 67
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 251 bits (643), Expect = 1e-82
Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 15/234 (6%)
Query: 155 QV--RSSTGQGEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVGKHNLNGVDKFEKT 210
QV R H CGG++I +LTAAHC+ K + LR+ + + +L ++
Sbjct: 15 QVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYY---QDQL 71
Query: 211 FKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGW 269
V + ++H +F DIA++++ + + V + +P C VTGW
Sbjct: 72 LPVSRIIVHPQFYII-QTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGW 130
Query: 270 GAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSN----QNILDSMLCAGYLNGGID 325
G + + L+ V +++ + C + G + I D MLCAG D
Sbjct: 131 GDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGN--SQRD 188
Query: 326 ACGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+C GDSGGPL CK+ G ++ +GVVSWG+GCA+ N+PG+YTRV+YY WI+ +
Sbjct: 189 SCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVP 242
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 256 bits (656), Expect = 2e-82
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 14/229 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISK--SKLRIIVGKHNLNGVDKFEKTFKVEKAVLH 219
G GA++ D +LTAAH + S L I +G E +H
Sbjct: 180 LGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPH--YTQAWSEAVFIH 237
Query: 220 HRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA---AASDWCVVTGWGAQNAES 276
+ + NDIA++K+ + N + PIC+P ++ D +GWG
Sbjct: 238 EGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-- 295
Query: 277 IDDISNTLRAATVKVIDQNTCRSS-AVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPL 335
++ L + ++D C ++ ++ +MLCAG +GG D+C GDSGG L
Sbjct: 296 -GFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 354
Query: 336 ACKI--GGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQML 381
R+ + G+VSWG C + + GVYT+V Y WI + I
Sbjct: 355 VFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISDF 403
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 256 bits (655), Expect = 2e-82
Identities = 79/331 (23%), Positives = 125/331 (37%), Gaps = 89/331 (26%)
Query: 59 CGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILT 118
CG V E + +I+GG G +PWQV + + GGA++ D ILT
Sbjct: 145 CGKPVNPVEQR----QQIIGGQKAKMGNFPWQVFTNIH-------GRGGGALLGDRWILT 193
Query: 119 AAHCLQG-----ISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIIS 173
AAH L S + L + +G N+ + K +
Sbjct: 194 AAHTLYPKEHEAQSNASLDVFLGHTNVEELMK-LGNHPIR-------------------- 232
Query: 174 DTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEG--THSND 231
R+ V H +R++ D
Sbjct: 233 -------------------RVSV----------------------HPDYRQDESYNFEGD 251
Query: 232 IAVVKIRGNIEFNQYVQPICIPDRD-NAAASDWCVVTGWGAQNAESIDDISNTLRAATVK 290
IA++++ ++ + PIC+PD D V+G+G + I++ LR +
Sbjct: 252 IALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME----EKIAHDLRFVRLP 307
Query: 291 VIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKI--GGRFVLSGV 348
V + C + N +M CAG+ + DAC GDSGG A + R+V +G+
Sbjct: 308 VANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGI 367
Query: 349 VSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
VSWG GC++ G YT+V Y WI ++
Sbjct: 368 VSWGIGCSR--GYGFYTKVLNYVDWIKKEME 396
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 250 bits (640), Expect = 4e-82
Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 14/232 (6%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTF 211
V +Q SS GQ H CGG ++ + +LTAAHC+ S R+++G+H+L+ +
Sbjct: 16 VSLQYDSS-GQWRHTCGGTLVDQSWVLTAAHCIS--SSRTYRVVLGRHSLSTNEPGSLAV 72
Query: 212 KVEKAVLHHRFRKEG-THSNDIAVVKIRGNIEFNQYVQPICIPDR-DNAAASDWCVVTGW 269
KV K V+H + ++ NDIA++K+ + +Q C+P + C VTGW
Sbjct: 73 KVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGW 132
Query: 270 GAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGG 329
G ++ + L+ + V+D TC +G+ + +M+CAG +G I +C G
Sbjct: 133 GRL--QTNGASPDILQQGQLLVVDYATCSKPGWWGS---TVKTNMICAGG-DGIISSCNG 186
Query: 330 DSGGPLACKIG-GRFVLSGVVSWGD--GCAKKNKPGVYTRVSYYTKWINDRI 378
DSGGPL C+ G++ + G+VS+G GC +KP V+TRVS Y WIN I
Sbjct: 187 DSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 249 bits (637), Expect = 8e-82
Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 24/234 (10%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG--ISKSKLRIIVGK--HNLNGVDKF 207
V ++ R G+H CGG+++ + ILTA C + + + +G N +
Sbjct: 13 VSLRNRQ----GQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPS 68
Query: 208 EKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNAAASDWCVV 266
+ V K V + + ++K+ ++ NQ V IC+P C +
Sbjct: 69 LQRVPVAKMVCG-------PSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEI 121
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDA 326
GWG L A + VI C + + +S +C L + A
Sbjct: 122 AGWGETKG---TGNDTVLNVALLNVISNQECNIK--HRGR---VRESEMCTEGLLAPVGA 173
Query: 327 CGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQM 380
C GD GGPLAC +VL G++ CA+ P V+TRVS + WI+ +++
Sbjct: 174 CEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRL 227
Score = 69.5 bits (171), Expect = 7e-14
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG--ISKSKLRI 133
+VGG G PW V ++ R G+H CGG+++ + ILTA C + + +
Sbjct: 1 VVGGHP---GNSPWTVSLRNRQ----GQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEV 53
Query: 134 IVGK--HNLNGVDKFEKTFKVE 153
+G N + + V
Sbjct: 54 WLGTLFQNPQHGEPSLQRVPVA 75
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 248 bits (635), Expect = 1e-81
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 15/218 (6%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
C G +I++ +LTAAHC + ++ +G H+ +++ E+T ++ +
Sbjct: 22 TGFFCSGTLINEEWVLTAAHCD----NTNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNK 77
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISN 282
+ + DI ++K+ + ++++ P+ +P + S C + GWG+ +
Sbjct: 78 KNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGSV-CHIMGWGSIT-PIKVTYPD 135
Query: 283 TLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGGR 342
A + ++D C++ Y LCAG L GG D CGGDSGGPL C
Sbjct: 136 VPYCAYINLLDDAVCQAG--YP--ELLTEYRTLCAGILEGGKDTCGGDSGGPLICN---- 187
Query: 343 FVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
G+VS+G C + KPGVYT+V Y WI I
Sbjct: 188 GQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225
Score = 76.1 bits (188), Expect = 4e-16
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
++GG + V C G +I++ +LTAAHC + ++ +
Sbjct: 1 VIGGDECNINEHRSLVAFFNS-----TGFFCSGTLINEEWVLTAAHCD----NTNFQMKL 51
Query: 136 GKHNLNGVDKFEKTFKVE 153
G H+ +++ E+T +
Sbjct: 52 GVHSKKVLNEDEQTRNPK 69
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 248 bits (635), Expect = 2e-81
Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 15/223 (6%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT-FKVEKAV 217
++ CGG +I+ +LTAAHC + RI +G H+ ++ E+T EK
Sbjct: 20 TSRSRTLFCGGTLINQEWVLTAAHC----DRKNFRIKLGMHSKKVPNEDEQTRVPKEKFF 75
Query: 218 LHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESI 277
DI ++++ ++ ++++ P +P + S C + GWG + +
Sbjct: 76 CLSSKNYT-LWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSVGSV-CRIMGWGRIS-PTE 132
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLAC 337
+ + +++ CR+ Y LCAG L GG D C GDSGGPL C
Sbjct: 133 GTYPDVPHCVNINLLEYEMCRAP--YPEFELPATSRTLCAGILEGGKDTCKGDSGGPLIC 190
Query: 338 KIGGRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRIQ 379
G+F G+ SWGD CA+ +KP YT+V + WI + I
Sbjct: 191 N--GQFQ--GIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIA 229
Score = 76.8 bits (190), Expect = 2e-16
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + + V + S CGG +I+ +LTAAHC + RI +
Sbjct: 1 IIGGDECNINEHRFLVALYTSRS---RTLFCGGTLINQEWVLTAAHC----DRKNFRIKL 53
Query: 136 GKHNLNGVDKFEKT-FKVE 153
G H+ ++ E+T E
Sbjct: 54 GMHSKKVPNEDEQTRVPKE 72
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 246 bits (630), Expect = 6e-81
Identities = 75/218 (34%), Positives = 111/218 (50%), Gaps = 19/218 (8%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G CGG +I +LTAAHC K L++ +GKHNL + ++ V +AV+H +
Sbjct: 22 GHLLCGGVLIHPLWVLTAAHCK----KPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDY 77
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISN 282
+H DI ++++ + ++ +QP+ + +A + C + GWG D +
Sbjct: 78 DAA-SHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTS-CHILGWGKTAD---GDFPD 132
Query: 283 TLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGGR 342
T++ A + ++ + C Y I +MLCAG G D+C GDSGGPL C
Sbjct: 133 TIQCAYIHLVSREECEH--AYPG---QITQNMLCAGDEKYGKDSCQGDSGGPLVCG---- 183
Query: 343 FVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
L G+VSWG+ C K KPGVYT V YT WI IQ
Sbjct: 184 DHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221
Score = 78.3 bits (194), Expect = 4e-17
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+V G ++P+Q + G CGG +I +LTAAHC K L++ +
Sbjct: 1 LVHGGPCDKTSHPYQAALYTS-----GHLLCGGVLIHPLWVLTAAHCK----KPNLQVFL 51
Query: 136 GKHNLNGVDKFEKTFKVE 153
GKHNL + ++ V
Sbjct: 52 GKHNLRQRESSQEQSSVV 69
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 250 bits (639), Expect = 4e-80
Identities = 79/335 (23%), Positives = 135/335 (40%), Gaps = 81/335 (24%)
Query: 58 TCGSRVVNHEPQRAANVKIVGGT-STPYGAYPWQVEIQVRS---STGQGEHQCGGAIISD 113
CG R +R + KI G T YG +PW V + + +G+ + CGG++I+
Sbjct: 117 FCGIR-----NERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAP 171
Query: 114 TVILTAAHCLQGISKS--KLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAI 171
+V+LT AHC+ + ++I G+ + E+ E ++R
Sbjct: 172 SVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEK--ERLPYQERKIR-------------- 215
Query: 172 ISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSND 231
++I+ H F T ND
Sbjct: 216 ---------------------QVII----------------------HSNF-NPKTVVND 231
Query: 232 IAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKV 291
+A++ + + + IC+P + S C +GWG + S SN L+ +
Sbjct: 232 VALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPT 291
Query: 292 IDQNTCRSSAVYGNS----NQNILDSMLCAGYLNGGIDACGGDSGGPLACKI---GGRFV 344
+D++ C++ N+ + + +CAG G D C GD G PL C R++
Sbjct: 292 VDRDKCQAD--LRNTRLGLKFVLDQTFVCAGGE-QGKDTCTGDGGSPLFCPDPRNPSRYM 348
Query: 345 LSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
G+V+WG GC +N PGVY V+++ WI+ +Q
Sbjct: 349 QMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQ 383
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 243 bits (623), Expect = 1e-79
Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 14/219 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G H CGG ++++ +L+AAHCL+ + K+++++G H+L+ + ++ + V +AV H
Sbjct: 21 NGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD 80
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDN-AAASDWCVVTGWGAQNAESIDDI 280
+ + T +D+ ++++ V+P+ D A C V GWG
Sbjct: 81 SQPD-TIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWG--IVNHAGRR 137
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
++L+ + V+D+ TC + I + ++CA + D+C GD+GGPL C
Sbjct: 138 PDSLQHVLLPVLDRATCNRRTHHDG---AITERLMCAE--SNRRDSCKGDAGGPLVCG-- 190
Query: 341 GRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRI 378
VL GVV+ G C + KPG+YTRV+ Y WI+ +
Sbjct: 191 --GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 83.8 bits (208), Expect = 8e-19
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG A P+ +Q+ G H CGG ++++ +L+AAHCL+ + K+++++
Sbjct: 1 ILGGREAEAHARPYMASVQLN-----GAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G H+L+ + ++ + V
Sbjct: 56 GAHSLSQPEPSKRLYDVL 73
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 249 bits (636), Expect = 2e-79
Identities = 79/333 (23%), Positives = 128/333 (38%), Gaps = 80/333 (24%)
Query: 58 TCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVIL 117
CG+ + ++ G + PW ++ + G+ CGGA+IS+ IL
Sbjct: 110 DCGNFLSQ---------RVSNGYEVKLSSRPWMALLRYQQF-GESRFLCGGAMISERYIL 159
Query: 118 TAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVI 177
TAAHC+ G+ I +G+H + S+ Q + V+
Sbjct: 160 TAAHCVHGLQNDLYEIRLGEHRI-----------------STEEDCRQQGRKKKCAPPVV 202
Query: 178 LTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKI 237
+EK ++H ++ +DIA++K+
Sbjct: 203 --------------------------------NVGIEKHLIHEKYDAR-HIMHDIALLKL 229
Query: 238 RGNIEFNQYVQPICIPDRDNAAASDW----CVVTGWGAQNAESIDDISNTLRAATVKVID 293
++ F ++++PIC+P D VTGWG S S+ L A V +
Sbjct: 230 NRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGS---SSDVLLQANVPLQP 286
Query: 294 QNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKI------GGRFVLSG 347
++ C + Y + S LC G D+C GDSGGPL + V G
Sbjct: 287 RSACSQA--YRR---AVPLSQLCVGG-GDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFG 340
Query: 348 VVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
+VS G C + + PG+YT V Y +WI D +
Sbjct: 341 IVSQGVVTCGQISLPGLYTNVGEYVQWITDTMA 373
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 242 bits (620), Expect = 2e-79
Identities = 73/219 (33%), Positives = 110/219 (50%), Gaps = 19/219 (8%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
G H+CG +I+ + +LTAAHC+ G+S ++L++ VG + L+ + VE AV++
Sbjct: 21 SGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNYLSES---GDVYDVEDAVVNK 77
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDI 280
+ ND+A+V + I+FN VQPI + D S+ C +TGWG+ +
Sbjct: 78 NYDDF-LLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGG--NT 134
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
N L+ + V Q C ++DS +C G AC GDSGGPL
Sbjct: 135 PNALQEIELIVHPQKQCERD--QW----RVIDSHICTLT-KRGEGACHGDSGGPLVAN-- 185
Query: 341 GRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
G+VS+G CA +P VYTRVS + WIN ++
Sbjct: 186 --GAQIGIVSFGSPCA-LGEPDVYTRVSSFVSWINANLK 221
Score = 85.7 bits (213), Expect = 1e-19
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRII 134
IVGG P G YP+QV +++ G H+CG +I+ + +LTAAHC+ G+S ++L++
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLS-----GSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVH 55
Query: 135 VGKHNLNG 142
VG + L+
Sbjct: 56 VGTNYLSE 63
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 242 bits (620), Expect = 2e-79
Identities = 73/218 (33%), Positives = 110/218 (50%), Gaps = 19/218 (8%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
+ CGG ++++ +LTAAHC ++ + +G L D+ + K K+ H +
Sbjct: 22 NQLHCGGVLVNERWVLTAAHC----KMNEYTVHLGSDTLG--DRRAQRIKASKSFRHPGY 75
Query: 223 RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDISN 282
+ TH ND+ +VK+ + V+ + +P R + C V+GWG +
Sbjct: 76 STQ-THVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTT-CTVSGWGTTT-SPDVTFPS 132
Query: 283 TLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGGR 342
L VK+I C VY + + +SMLCAG + +AC GDSGGPL C R
Sbjct: 133 DLMCVDVKLISPQDCT--KVYKDL---LENSMLCAGIPDSKKNACNGDSGGPLVC----R 183
Query: 343 FVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
L G+VSWG C + N PGVYT+V +TKWIND ++
Sbjct: 184 GTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMK 221
Score = 74.5 bits (184), Expect = 1e-15
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+ G G++PWQV + + CGG ++++ +LTAAHC ++ + +
Sbjct: 1 IIDGAPCARGSHPWQVALLSG-----NQLHCGGVLVNERWVLTAAHC----KMNEYTVHL 51
Query: 136 GKHNLNGVDKFEKTFKVE 153
G L D+ + K
Sbjct: 52 GSDTLG--DRRAQRIKAS 67
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 242 bits (619), Expect = 5e-79
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 17/235 (7%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTF 211
V +Q G H CGG++I+ ++TA HC+ + ++++G+++ + ++ E+
Sbjct: 14 VSLQYEKD-GAFHHTCGGSLIAPDWVVTAGHCIS--TSRTYQVVLGEYDRSVLEGSEQVI 70
Query: 212 --KVEKAVLHHRFRKEG-THSNDIAVVKIRGNIEFNQYVQPICIPDR-DNAAASDWCVVT 267
+H + NDIA+VK+ + + VQ +P D C ++
Sbjct: 71 PINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYIS 130
Query: 268 GWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDAC 327
GWG + + + L+ A + +D C +G + + +M+CAG C
Sbjct: 131 GWG--RLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGIT---VKKTMVCAGG--DTRSGC 183
Query: 328 GGDSGGPLACKIG-GRFVLSGVVSWGD--GCAKKNKPGVYTRVSYYTKWINDRIQ 379
GDSGGPL C G + + GV S+ GC KP V+TRVS + WI++ I
Sbjct: 184 NGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIA 238
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 241 bits (618), Expect = 5e-79
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 155 QV--RSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFK 212
V R+ G+ CGGAI+S +LTAAHC+ + I NL K+
Sbjct: 14 TVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTNLWEDP--GKSDP 71
Query: 213 VEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQY-VQPICIPDRD-NAAASDWCVVTGWG 270
V +R+E T NDIA++++ ++ + +P +PD + +V+G+G
Sbjct: 72 YVSHVYLSFYRQE-TMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYG 130
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGD 330
+++D + L++A + V+D + CR+ YG + + CA G+ GD
Sbjct: 131 DG--QTMDPKDHDLKSAQLTVVDLDECRTK--YGPI--FLSLQVFCAQK--VGVSLESGD 182
Query: 331 SGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+G P + L GV ++ + P V+T+V Y WI D I+
Sbjct: 183 AGDPTVQQ----DTLVGVAAYFPKRP-EGAPEVFTKVGSYVSWIQDIIK 226
Score = 83.0 bits (206), Expect = 1e-18
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 78 GGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGK 137
GG T PW V ++ G+ CGGAI+S +LTAAHC+ + I
Sbjct: 2 GGEKTDIKQVPWTVAVRTYP--GEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYES 59
Query: 138 HNLN 141
NL
Sbjct: 60 TNLW 63
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 242 bits (619), Expect = 2e-78
Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 23/228 (10%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
QV+ + +G+ CGG II + +LT A C I K N + K+
Sbjct: 67 QVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRN-----ITVKTYFNRTSQDPLMIKIT 121
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA----AASDWCVVTGWG 270
+H R+ + ND++++++ I+ P+C P++D A +++GW
Sbjct: 122 HVHVHMRYDAD-AGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWA 180
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGD 330
D+ N+L V +++ C N + C + A
Sbjct: 181 RNGT----DLGNSLTTRPVTLVEGEECGQV-----LNVTVTTRTYCER---SSVAAMHWM 228
Query: 331 SGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G + + G + L+GV+ + + T+VS Y+ W +
Sbjct: 229 DGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIM 275
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 240 bits (614), Expect = 3e-78
Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 26/228 (11%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
++QCGG ++ +LTAAHC K ++ +GK+N + ++ V KA+ H F
Sbjct: 25 NKYQCGGVLLDRNWVLTAAHCY----NDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDF 80
Query: 223 ----------RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQ 272
+ E +SND+ ++++ + V+PI +P + S C+ +GWG+
Sbjct: 81 NMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGST-CLASGWGST 139
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSG 332
+ L+ +K++ C + + + D+MLCAG ++GG C DSG
Sbjct: 140 T-PIKFKYPDDLQCVNLKLLPNEDCDKA--HEM---KVTDAMLCAGEMDGGSYTCEHDSG 193
Query: 333 GPLACKIGGRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
GPL C +L G+ SWG + C + +P VYT++ ++ WI + +
Sbjct: 194 GPLICD----GILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 237
Score = 75.3 bits (186), Expect = 8e-16
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
V + PW V + ++QCGG ++ +LTAAHC K ++ +
Sbjct: 4 PVQSQVDCENSQPWHVAVYRF-----NKYQCGGVLLDRNWVLTAAHCY----NDKYQVWL 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
GK+N + ++ V
Sbjct: 55 GKNNFLEDEPSDQHRLVS 72
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 239 bits (612), Expect = 4e-78
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 19/219 (8%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKT-FKVEKAVLHHR 221
CGG +I+ +LTA HC + +RI +G HNL ++K F EK +
Sbjct: 21 NGSLCGGTLINQEWVLTARHCD----RGNMRIYLGMHNLKVLNKDALRRFPKEKYFCLNT 76
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDIS 281
DI ++++ + + ++ P+ +P + S C + GWG +
Sbjct: 77 RNDT-IWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSV-CRIMGWGTIT-SPNATLP 133
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGG 341
+ A + ++D C+++ Y + + LCAG L GG D C GDSGGPL C G
Sbjct: 134 DVPHCANINILDYAVCQAA--YKG----LAATTLCAGILEGGKDTCKGDSGGPLICN--G 185
Query: 342 RFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+F G++S G + CA+ KPG+YT+V YT WI I
Sbjct: 186 QFQ--GILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIIS 222
Score = 72.2 bits (178), Expect = 9e-15
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
++GG + + + CGG +I+ +LTA HC + +RI +
Sbjct: 1 VIGGDECNINEHRFLALVY------ANGSLCGGTLINQEWVLTARHCD----RGNMRIYL 50
Query: 136 GKHNLNGVDKFEKTF 150
G HNL ++K
Sbjct: 51 GMHNLKVLNKDALRR 65
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 239 bits (611), Expect = 6e-78
Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 17/220 (7%)
Query: 161 GQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
C GA+I+ +LTAAHC + +RI +G H+ N ++ E+
Sbjct: 22 ASSTIHCAGALINREWVLTAAHCD----RRNIRIKLGMHSKNIRNEDEQIRVPRGKYFCL 77
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDI 280
+ DI ++++R + ++ ++ P+ +P R S C + GWG + +
Sbjct: 78 NTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSR-CRIMGWGKISTTTY--- 133
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
+ + ++ C Y LCAG L GG D C GDSGGPL C
Sbjct: 134 PDVPHCTNIFIVKHKWCEPL--YPWVP--ADSRTLCAGILKGGRDTCHGDSGGPLICN-- 187
Query: 341 GRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ G+V+ G + C + KP VYT+V Y WI I
Sbjct: 188 --GEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIA 225
Score = 75.3 bits (186), Expect = 8e-16
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+VGG +P+ V + C GA+I+ +LTAAHC + +RI +
Sbjct: 1 VVGGDECNINEHPFLVALYTS---ASSTIHCAGALINREWVLTAAHCD----RRNIRIKL 53
Query: 136 GKHNLNGVDKFEKTFKVEIQV 156
G H+ N ++ E+ +
Sbjct: 54 GMHSKNIRNEDEQIRVPRGKY 74
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 239 bits (611), Expect = 7e-78
Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 26/229 (11%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
Q EH CGG ++ +LTAAHC + + +GK+ L + + V K+ H
Sbjct: 21 QKEHICGGVLLDRNWVLTAAHCY----VDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPG 76
Query: 222 F----------RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGA 271
F S+D+ ++++ + V+PI +P ++ S C+ +GWG+
Sbjct: 77 FNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSK-CLASGWGS 135
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDS 331
+ + L+ + ++ C VY + D MLCAG + GG D C DS
Sbjct: 136 IT-PTRWQKPDDLQCVFITLLPNENCAK--VYLQ---KVTDVMLCAGEMGGGKDTCRDDS 189
Query: 332 GGPLACKIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
GGPL C +L G S+G C K P +YT + + WI D +
Sbjct: 190 GGPLICD----GILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234
Score = 76.5 bits (189), Expect = 3e-16
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
+VGG + + PWQV + + EH CGG ++ +LTAAHC + + +
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQ-----KEHICGGVLLDRNWVLTAAHCY----VDQYEVWL 51
Query: 136 GKHNLNGVDKFEKTFKVE 153
GK+ L + + V
Sbjct: 52 GKNKLFQEEPSAQHRLVS 69
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 239 bits (611), Expect = 8e-78
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 26/229 (11%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
E+ CGG +I + ++TAAHC + ++++G++NL + F + V ++ H
Sbjct: 19 INEYLCGGVLIDPSWVITAAHCY----SNNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPD 74
Query: 222 F----------RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGA 271
+ + HSND+ ++ + + V+ I +P ++ S C+ +GWG+
Sbjct: 75 YIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGST-CLASGWGS 133
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDS 331
N S +S+ L+ + ++ C + Y + N+ D MLCAG + GG D C GDS
Sbjct: 134 TN-PSEMVVSHDLQCVNIHLLSNEKCIET--YKD---NVTDVMLCAGEMEGGKDTCAGDS 187
Query: 332 GGPLACKIGGRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRIQ 379
GGPL C VL G+ S G CAK P +Y ++ +T WI ++
Sbjct: 188 GGPLICD----GVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232
Score = 73.4 bits (181), Expect = 3e-15
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + PWQV + E+ CGG +I + ++TAAHC + ++++
Sbjct: 1 IVGGYKCEKNSQPWQVAVI-------NEYLCGGVLIDPSWVITAAHCY----SNNYQVLL 49
Query: 136 GKHNLNGVDKFEKTFKVE 153
G++NL + F + V
Sbjct: 50 GRNNLFKDEPFAQRRLVR 67
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 249 bits (636), Expect = 1e-77
Identities = 88/329 (26%), Positives = 126/329 (38%), Gaps = 87/329 (26%)
Query: 58 TCGSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVIL 117
+CG + H ++ +IVGG G PWQV I+ CGG I IL
Sbjct: 308 SCGVKNRMHIRRK----RIVGGKRAQLGDLPWQVAIKDA-----SGITCGGIYIGGCWIL 358
Query: 118 TAAHCLQGISKSKLRIIVGKHNL-NGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTV 176
TAAHCL+ + +I + + K V+
Sbjct: 359 TAAHCLRASKTHRYQIWTTVVDWIHPDLKRIVIEYVD----------------------- 395
Query: 177 ILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVK 236
RII H + T+ NDIA+++
Sbjct: 396 ----------------RIIF----------------------HENYNAG-TYQNDIALIE 416
Query: 237 IRGNIEFN----QYVQPICIPDRDNA-AASDWCVVTGWGAQNAESIDDISNTLRAATVKV 291
++ + P C+P +D C+V+GWG + ++ +L+ VK+
Sbjct: 417 MKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKD---NERVFSLQWGEVKL 473
Query: 292 IDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACK-IGGRFVLSGVVS 350
I C YG N+ M CAG +G IDAC GDSGGPL C + GVVS
Sbjct: 474 ISN--CSK--FYG--NRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVS 527
Query: 351 WGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
WG+ C K PGVYT+V+ Y WI+ +
Sbjct: 528 WGENCGKPEFPGVYTKVANYFDWISYHVG 556
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 238 bits (609), Expect = 1e-77
Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 15/222 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ C GA+I+ +LTAAHC + ++I+G H++ + ++ V+K +
Sbjct: 21 DRKTICAGALIAKDWVLTAAHCNLN---KRSQVILGAHSITREEPTKQIMLVKKEFPYPC 77
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDR-DNAAASDWCVVTGWGAQNAESIDDI 280
+ T D+ ++++ + N+YV + +P + D+ C V GWG +
Sbjct: 78 YDPA-TREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWG--RTHNSASW 134
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
S+TLR + +ID+ C Y N N I +M+CAG L GG D+C GDSG PL C+
Sbjct: 135 SDTLREVEITIIDRKVCNDRNHY-NFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE-- 191
Query: 341 GRFVLSGVVSWG--DGCAKKNKPGVYTRVS-YYTKWINDRIQ 379
V GV S+G + C PGVY +S + WI I+
Sbjct: 192 --GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK 231
Score = 76.1 bits (188), Expect = 4e-16
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ V + + + C GA+I+ +LTAAHC + ++I+
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLD-----RKTICAGALIAKDWVLTAAHCNLN---KRSQVIL 52
Query: 136 GKHNLNGVDKFEKTFKVE 153
G H++ + ++ V+
Sbjct: 53 GAHSITREEPTKQIMLVK 70
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 240 bits (615), Expect = 2e-77
Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 23/228 (10%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
QV+ + +G+ CGG II + +LT A C R I K N + K+
Sbjct: 108 QVKLTNSEGKDFCGGVIIRENFVLTTAKCSLL-----HRNITVKTYFNRTSQDPLMIKIT 162
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA----AASDWCVVTGWG 270
+H R+ + ND++++++ I+ P+C P++D A +++GW
Sbjct: 163 HVHVHMRYDAD-AGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWA 221
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGD 330
+ N+L V +++ C N + C + A
Sbjct: 222 RNGTDL----GNSLTTRPVTLVEGEECGQV-----LNVTVTTRTYCER---SSVAAMHWM 269
Query: 331 SGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
G + + G + L+GV+ + + T+VS Y+ W +
Sbjct: 270 DGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIM 316
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 235 bits (601), Expect = 2e-76
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 17/218 (7%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+ CGG++IS ILTAAHC+ G + +++G HN+ + + T + +H
Sbjct: 21 DDMYFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAHNIREDEATQVTIQSTDFTVHEN 78
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDIS 281
+ SNDIAV+++ + + + +P + TGWG + +S IS
Sbjct: 79 YNSF-VISNDIAVIRLPVPVTLTAAIATVGLPST-DVGVGTVVTPTGWGLPS-DSALGIS 135
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGG 341
+ LR V ++ C + YG + D +C GG C GDSGGPL
Sbjct: 136 DVLRQVDVPIMSNADCDAV--YGI----VTDGNICIDS-TGGKGTCNGDSGGPLNYN--- 185
Query: 342 RFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRI 378
+ G+ S+G + P +TRV+Y+ WI +
Sbjct: 186 -GLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222
Score = 79.9 bits (198), Expect = 1e-17
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG ++P Q + + + CGG++IS ILTAAHC+ G + +++
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDM-----YFCGGSLISPEWILTAAHCMDG--AGFVDVVL 53
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HN+ + + T +
Sbjct: 54 GAHNIREDEATQVTIQST 71
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 234 bits (600), Expect = 2e-76
Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 20/225 (8%)
Query: 156 VRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEK 215
++ + G+ +CGG ++ + +LTAAHC S + + +G HN+ + ++ +
Sbjct: 18 LQIQSPAGQSRCGGFLVREDFVLTAAHCW----GSNINVTLGAHNIQRRENTQQHITARR 73
Query: 216 AVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQNA 274
A+ H ++ + T NDI ++++ + N+ V P+ +P C V GWG
Sbjct: 74 AIRHPQYNQR-TIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRV-- 130
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGP 334
S+ ++TLR ++V C +G+ +C G A GDSGGP
Sbjct: 131 -SMRRGTDTLREVQLRVQRDRQCLRI--FGS---YDPRRQICVGDRRERKAAFKGDSGGP 184
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
L C V G+VS+G P V+TRVS + WI ++
Sbjct: 185 LLCN----NVAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTTMR 223
Score = 77.9 bits (193), Expect = 7e-17
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + + P+ +Q++S GQ +CGG ++ + +LTAAHC S + + +
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQ--SRCGGFLVREDFVLTAAHCW----GSNINVTL 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HN+ + ++
Sbjct: 55 GAHNIQRRENTQQHITAR 72
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 234 bits (599), Expect = 5e-76
Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 26/228 (11%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
G CGG ++ +LTAAHC+ ++K I++G+H+L + + F+V + H +
Sbjct: 22 GRAVCGGVLVHPQWVLTAAHCI----RNKSVILLGRHSLFHPEDTGQVFQVSHSFPHPLY 77
Query: 223 ----------RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQ 272
R S+D+ ++++ E V+ + +P ++ A + C +GWG+
Sbjct: 78 DMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPALGTT-CYASGWGSI 136
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSG 332
E L+ + VI + C + + MLCAG GG C GDSG
Sbjct: 137 EPEE-FLTPKKLQCVDLHVISNDVCAQV--HPQ---KVTKFMLCAGRWTGGKSTCSGDSG 190
Query: 333 GPLACKIGGRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
GPL C VL G+ SWG + CA +P +YT+V +Y KWI D I
Sbjct: 191 GPLVCN----GVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV 234
Score = 73.8 bits (182), Expect = 2e-15
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + PWQV + R G CGG ++ +LTAAHC+ ++K I++
Sbjct: 1 IVGGWECEKHSQPWQVLVASR-----GRAVCGGVLVHPQWVLTAAHCI----RNKSVILL 51
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+H+L + + F+V
Sbjct: 52 GRHSLFHPEDTGQVFQVS 69
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 233 bits (597), Expect = 6e-76
Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 23/230 (10%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGV-DKFEKT 210
+ +R + CG ++ +LTAAHC + R+ +G ++L+ V + ++
Sbjct: 16 AALLLRP----NQLYCGAVLVHPQWLLTAAHCRK----KVFRVRLGHYSLSPVYESGQQM 67
Query: 211 FKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWG 270
F+ K++ H + HSND+ ++K+ I + V+PI + +A + C+V+GWG
Sbjct: 68 FQGVKSIPHPGYSHP-GHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTK-CLVSGWG 125
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGD 330
L+ + V+ Q C + Y I D+M CAG G D+C GD
Sbjct: 126 TTK-SPQVHFPKVLQCLNISVLSQKRCEDA--YPR---QIDDTMFCAGD-KAGRDSCQGD 178
Query: 331 SGGPLACKIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
SGGP+ C G G+VSWGD CA+ N+PGVYT + +TKWI + IQ
Sbjct: 179 SGGPVVCN--GSLQ--GLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224
Score = 76.4 bits (189), Expect = 2e-16
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+ G+ PWQ + +R + CG ++ +LTAAHC + R+ +
Sbjct: 1 IINGSDCDMHTQPWQAALLLRP----NQLYCGAVLVHPQWLLTAAHCRK----KVFRVRL 52
Query: 136 GKHNLNGV-DKFEKTFKVE 153
G ++L+ V + ++ F+
Sbjct: 53 GHYSLSPVYESGQQMFQGV 71
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 233 bits (596), Expect = 1e-75
Identities = 72/219 (32%), Positives = 111/219 (50%), Gaps = 19/219 (8%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
CGG ++ D +LTAAHC K K + +G H+L D+ E+ +V +++ H +
Sbjct: 22 ERLICGGVLVGDRWVLTAAHCK----KQKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCY 77
Query: 223 --RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDI 280
HS+DI +++++ + V+P+ + + C+++GWG ++
Sbjct: 78 NNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLC-PKVGQKCIISGWGTVT-SPQENF 135
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
NTL A VK+ QN C + Y I + M+CAG + G D C GDSGGPL C
Sbjct: 136 PNTLNCAEVKIYSQNKCERA--YPG---KITEGMVCAGS-SNGADTCQGDSGGPLVCD-- 187
Query: 341 GRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRI 378
+L G+ SWG C K KPGVYT++ YT WI +
Sbjct: 188 --GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224
Score = 74.9 bits (185), Expect = 8e-16
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+ G + PWQ + CGG ++ D +LTAAHC K K + +
Sbjct: 1 ILEGRECIPHSQPWQAALFQG-----ERLICGGVLVGDRWVLTAAHCK----KQKYSVRL 51
Query: 136 GKHNLNGVDKFEKTFKVE 153
G H+L D+ E+ +V
Sbjct: 52 GDHSLQSRDQPEQEIQVA 69
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 232 bits (595), Expect = 1e-75
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
QG H CGGA+I ++TAA C Q + +++G ++L ++ + ++ +
Sbjct: 21 QGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENG 80
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAESIDDI 280
+ + + ND+ ++++ V + +P ++ + C V GWG+Q + +
Sbjct: 81 YDPQ-QNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGG--RL 137
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
S R V V ++ CR + +C G L C GD G PL C+
Sbjct: 138 SRFPRFVNVTVTPEDQCR-------------PNNVCTGVLTRRGGICNGDGGTPLVCE-- 182
Query: 341 GRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
+ GV S+ G + P +TRV+ + WI+ +
Sbjct: 183 --GLAHGVASFSLGPCGR-GPDFFTRVALFRDWIDGVLN 218
Score = 80.3 bits (199), Expect = 1e-17
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG +P+ IQ + G H CGGA+I ++TAA C Q + +++
Sbjct: 1 IVGGRKARPRQFPFLASIQNQ-----GRHFCGGALIHARFVMTAASCFQSQNPGVSTVVL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G ++L ++ +
Sbjct: 56 GAYDLRRRERQSRQTFSI 73
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 232 bits (595), Expect = 1e-75
Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 20/220 (9%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGV-DKFEKTFKVEKAVLHH 220
+ E C G ++ +L+AAHC ++ I +G H+L + + + +V H
Sbjct: 21 ENELFCSGVLVHPQWVLSAAHCF----QNSYTIGLGLHSLEADQEPGSQMVEASLSVRHP 76
Query: 221 RFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDI 280
+ + +ND+ ++K+ ++ + ++ I I + A + C+V+GWG + +
Sbjct: 77 EYNRP-LLANDLMLIKLDESVSESDTIRSISIASQC-PTAGNSCLVSGWGLL---ANGRM 131
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
L+ V V+ + C Y SM CAG D+C GDSGGPL C
Sbjct: 132 PTVLQCVNVSVVSEEVCSKL--YDP---LYHPSMFCAGGGQDQKDSCNGDSGGPLICN-- 184
Query: 341 GRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRIQ 379
L G+VS+G C + PGVYT + +T+WI +Q
Sbjct: 185 --GYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ 222
Score = 68.7 bits (169), Expect = 1e-13
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+ G + PWQ + + E C G ++ +L+AAHC ++ I +
Sbjct: 1 IINGEDCSPHSQPWQAALVME-----NELFCSGVLVHPQWVLSAAHCF----QNSYTIGL 51
Query: 136 GKHNLNGV-DKFEKTFKVE 153
G H+L + + +
Sbjct: 52 GLHSLEADQEPGSQMVEAS 70
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 232 bits (593), Expect = 3e-75
Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 26/229 (11%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
QG QCGG ++ +LTAAHC+ +I +G+HNL+ + + +V + L +
Sbjct: 21 QGHFQCGGVLVHPQWVLTAAHCM----SDDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQ 76
Query: 222 F----------RKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGA 271
F R S+D+ ++++ V+ + +P ++ C +GWG
Sbjct: 77 FDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQE-PKLGSTCYTSGWGL 135
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDS 331
+ + S TL+ +++ C + Y + + +LCA + + C GDS
Sbjct: 136 IS-TFTNRGSGTLQCVELRLQSNEKCARA--YPE---KMTEFVLCATHRDDSGSICLGDS 189
Query: 332 GGPLACKIGGRFVLSGVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRIQ 379
GG L C V G+ SWG CA N V+T+V + KWI + I+
Sbjct: 190 GGALICD----GVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
Score = 72.2 bits (178), Expect = 9e-15
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + PWQV + + G QCGG ++ +LTAAHC+ +I +
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQ-----GHFQCGGVLVHPQWVLTAAHCM----SDDYQIWL 51
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+HNL+ + + +V
Sbjct: 52 GRHNLSKDEDTAQFHQVS 69
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 247 bits (632), Expect = 3e-75
Identities = 79/227 (34%), Positives = 111/227 (48%), Gaps = 15/227 (6%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKV 213
QV T G H CGG +IS +LTAAHCL+ + S ++I+G H ++ + +V
Sbjct: 576 QVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEV 635
Query: 214 EKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPD-RDNAAASDWCVVTGWGAQ 272
+ L DIA++K+ V P C+P A C +TGWG
Sbjct: 636 SRLFLE-------PTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET 688
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSG 332
+ L+ A + VI+ C + + LCAG+L GG D+C GDSG
Sbjct: 689 QG---TFGAGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSG 742
Query: 333 GPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
GPL C +++L GV SWG GCA+ NKPGVY RVS + WI ++
Sbjct: 743 GPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 789
Score = 69.7 bits (170), Expect = 5e-13
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 66 HEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQG 125
+ ++VGG ++PWQV ++ R G H CGG +IS +LTAAHCL+
Sbjct: 552 QVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRF----GMHFCGGTLISPEWVLTAAHCLEK 607
Query: 126 ISK-SKLRIIVGKHNLNGVDKFEKTFKVE 153
+ S ++I+G H ++ + +V
Sbjct: 608 SPRPSSYKVILGAHQEVNLEPHVQEIEVS 636
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 230 bits (590), Expect = 7e-75
Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 18/225 (8%)
Query: 156 VRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEK 215
+ + +CGG +I D +LTAAHC S + + +G HN+ + ++ V++
Sbjct: 18 LMIWDQKSLKRCGGFLIRDDFVLTAAHCW----GSSINVTLGAHNIKEQEPTQQFIPVKR 73
Query: 216 AVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQNA 274
+ H + + SNDI ++++ + + VQP+ +P C V GWG
Sbjct: 74 PIPHPAYNPK-NFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWG--QT 130
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGP 334
+ S+TL+ + V + C S + LC G + GDSGGP
Sbjct: 131 APLGKHSHTLQEVKMTVQEDRKCESD--LRH--YYDSTIELCVGDPEIKKTSFKGDSGGP 186
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
L C V G+VS+G P T+VS + WI ++
Sbjct: 187 LVCN----KVAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTMK 225
Score = 77.2 bits (191), Expect = 1e-16
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ + + +CGG +I D +LTAAHC S + + +
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSL--KRCGGFLIRDDFVLTAAHCW----GSSINVTL 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HN+ + ++ V+
Sbjct: 55 GAHNIKEQEPTQQFIPVK 72
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 229 bits (587), Expect = 2e-74
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 19/225 (8%)
Query: 156 VRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEK 215
+ T H CGG ++ + +LTAAHCL S + + +G HN+ ++ ++ V +
Sbjct: 18 LLFKTSGKSHICGGFLVREDFVLTAAHCL----GSSINVTLGAHNIMERERTQQVIPVRR 73
Query: 216 AVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDR-DNAAASDWCVVTGWGAQNA 274
+ H + E T +NDI ++K+ + V PI +P C V GWG
Sbjct: 74 PIPHPDYNDE-TLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGV 132
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGP 334
++ L+ ++V + C + + N I + +CAG + ++ GDSGGP
Sbjct: 133 NM--PSTDKLQEVDLEVQSEEKCIAR--FKNY---IPFTQICAGDPSKRKNSFSGDSGGP 185
Query: 335 LACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
L C V G+VS+G P VYTR+S + WI+ ++
Sbjct: 186 LVCN----GVAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTMR 224
Score = 77.2 bits (191), Expect = 2e-16
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ + ++S H CGG ++ + +LTAAHCL S + + +
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKS--HICGGFLVREDFVLTAAHCL----GSSINVTL 54
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HN+ ++ ++ V
Sbjct: 55 GAHNIMERERTQQVIPVR 72
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 229 bits (586), Expect = 4e-74
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 27/229 (11%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRF 222
QCGG ++ +LTAAHC+ ++ +G+HNL + + V ++ H F
Sbjct: 22 STFQCGGILVHRQWVLTAAHCI----SDNYQLWLGRHNLFDDENTAQFVHVSESFPHPGF 77
Query: 223 ----------RKEGTHSNDIAVVKIRGNIE-FNQYVQPICIPDRDNAAASDWCVVTGWGA 271
+ + +S+D+ ++++ + V+ + +P + S C+ +GWG+
Sbjct: 78 NMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEVGST-CLASGWGS 136
Query: 272 QNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDS 331
E+ + L+ +K++ + C+ + + + D MLC G+L GG D C GDS
Sbjct: 137 IEPEN-FSFPDDLQCVDLKILPNDECKKA--HVQ---KVTDFMLCVGHLEGGKDTCVGDS 190
Query: 332 GGPLACKIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
GGPL C VL GV SWG C NKP V RV Y KWI D I
Sbjct: 191 GGPLMCD----GVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA 235
Score = 74.6 bits (184), Expect = 1e-15
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG + PWQ + QCGG ++ +LTAAHC+ ++ +
Sbjct: 1 IVGGWECEQHSQPWQAALYHF-----STFQCGGILVHRQWVLTAAHCI----SDNYQLWL 51
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+HNL + + V
Sbjct: 52 GRHNLFDDENTAQFVHVS 69
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 227 bits (582), Expect = 9e-74
Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 24/220 (10%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
+G H CG +I+ +++AAHC+ ++ +R+++G HNL+ + + F V++ + +
Sbjct: 21 RGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQR-IFENG 79
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-AASDWCVVTGWGAQNAESIDDI 280
+ NDI ++++ G+ N VQ +P + C+ GWG I
Sbjct: 80 YDPV-NLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNR--GI 136
Query: 281 SNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIG 340
++ L+ V V+ + CR S +C C GDSG PL C
Sbjct: 137 ASVLQELNVTVVT-SLCR-------------RSNVCTLVRGRQAGVCFGDSGSPLVCN-- 180
Query: 341 GRFVLSGVVSWG-DGCAKKNKPGVYTRVSYYTKWINDRIQ 379
++ G+ S+ GCA P + V+ + WI+ IQ
Sbjct: 181 --GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ 218
Score = 82.2 bits (204), Expect = 2e-18
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
IVGG A+P+ V +Q+R G H CG +I+ +++AAHC+ ++ +R+++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLR-----GGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HNL+ + + F V+
Sbjct: 56 GAHNLSRREPTRQVFAVQ 73
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 228 bits (583), Expect = 9e-74
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 18/222 (8%)
Query: 159 STGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
G + CGG ++ D +LTAAHC + + +G HN+ ++ ++ V KA+
Sbjct: 22 KVGGKKMFCGGFLVRDKFVLTAAHCK----GRSMTVTLGAHNIKAKEETQQIIPVAKAIP 77
Query: 219 HHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDW-CVVTGWGAQNAESI 277
H + + SNDI ++K+ N + + V+P+ +P R+ C V GWG +
Sbjct: 78 HPDYNPD-DRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDG- 135
Query: 278 DDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLAC 337
+ TL + V C S + +S + +C G + DSGGPL C
Sbjct: 136 -EFPKTLHEVKLTVQKDQVCESQ--FQSSY--NRANEICVGDSKIKGASFEEDSGGPLVC 190
Query: 338 KIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
K +G+VS+G + P V+TRV + WI ++
Sbjct: 191 K----RAAAGIVSYGQTDG--SAPQVFTRVLSFVSWIKKTMK 226
Score = 76.4 bits (189), Expect = 2e-16
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + P+ + G + CGG ++ D +LTAAHC + + +
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGG-KKMFCGGFLVRDKFVLTAAHCK----GRSMTVTL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HN+ ++ ++ V
Sbjct: 56 GAHNIKAKEETQQIIPVA 73
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 231 bits (590), Expect = 1e-73
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 26/234 (11%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKF-EKTFKVEKAVLHHR 221
GGA+I++ +LTAAH ++G + + VG ++ K E +H
Sbjct: 101 DNPWAGGALINEYWVLTAAHVVEG--NREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPG 158
Query: 222 FRKEG------THSNDIAVVKIRGNIEFNQYVQPICIPDRD---NAAASDWCVVTGWGAQ 272
++ NDIA+V+++ ++ V PIC+P N D +++GWG
Sbjct: 159 WKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRT 218
Query: 273 NAESIDDISNTLRAATVKVIDQNTCRSS----AVYGNSNQNILDSMLCAGYLNGGIDACG 328
D + L+AA + V C+ +M+CAG G+D+C
Sbjct: 219 EK---RDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGE-KGMDSCK 274
Query: 329 GDSGGPLACKI---GGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
GDSGG A + +F +G+VSWG C G+YTRV Y WI +Q
Sbjct: 275 GDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG---TYGLYTRVKNYVDWIMKTMQ 325
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 227 bits (580), Expect = 2e-73
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 24/226 (10%)
Query: 156 VRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEK 215
++ G H CGG +I + +LTAAHCL+ I + + +++G HN+ + ++ F V +
Sbjct: 18 LQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQ 77
Query: 216 AVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASD-WCVVTGWGAQNA 274
L++ + NDI ++++ + V + +P +D C+ GWG
Sbjct: 78 VFLNNYDAE--NKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWG--RV 133
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGP 334
+ D + L+ V V+ CR +C C GDSGGP
Sbjct: 134 GAHDPPAQVLQELNVTVVT-FFCR-------------PHNICTFVPRRKAGICFGDSGGP 179
Query: 335 LACKIGGRFVLSGVVSWGD-GCAKKNKPGVYTRVSYYTKWINDRIQ 379
L C ++ G+ S+ GCA + P +TRV+ Y WI ++
Sbjct: 180 LICD----GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR 221
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 227 bits (580), Expect = 2e-73
Identities = 67/228 (29%), Positives = 102/228 (44%), Gaps = 21/228 (9%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTF 211
+ + + G CGG +IS +LTAAHC ++ +I+G H++ + ++
Sbjct: 16 AHLDIVTEKG-LRVICGGFLISRQFVLTAAHCK----GREITVILGAHDVRKRESTQQKI 70
Query: 212 KVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDR-DNAAASDWCVVTGWG 270
KVEK ++H + + +DI ++K+ +E V + +P D C GWG
Sbjct: 71 KVEKQIIHESYNSV-PNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWG 129
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGD 330
D S TLR ++++D+ C Y +C G A GD
Sbjct: 130 --KTGVRDPTSYTLREVELRIMDEKACVDYRYY------EYKFQVCVGSPTTLRAAFMGD 181
Query: 331 SGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRI 378
SGGPL C V G+VS+G AK P ++TRVS Y WIN I
Sbjct: 182 SGGPLLCA----GVAHGIVSYGHPDAK--PPAIFTRVSTYVPWINAVI 223
Score = 77.2 bits (191), Expect = 1e-16
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG + + P+ + + + G CGG +IS +LTAAHC ++ +I+
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKG-LRVICGGFLISRQFVLTAAHCK----GREITVIL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G H++ + ++ KVE
Sbjct: 56 GAHDVRKRESTQQKIKVE 73
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 225 bits (575), Expect = 1e-72
Identities = 64/229 (27%), Positives = 100/229 (43%), Gaps = 21/229 (9%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTF 211
+++ +S G CGG +I +LTAAHC + + +G HN+ + +
Sbjct: 16 AYLEIVTSNG-PSKFCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKL 70
Query: 212 KVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASD-WCVVTGWG 270
+V K H ++ T +DI ++K++ V + P + N C V GWG
Sbjct: 71 EVIKQFRHPKYNTS-TLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 129
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGD 330
+ S+TL+ ++++D C + LC G A GD
Sbjct: 130 --RTGVLKPGSDTLQEVKLRLMDPQACSHF------RDFDHNLQLCVGNPRKTKSAFKGD 181
Query: 331 SGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
SGGPL C V G+VS+G AK P V+TR+S+Y WIN +Q
Sbjct: 182 SGGPLLCA----GVAQGIVSYGRSDAK--PPAVFTRISHYRPWINQILQ 224
Score = 76.0 bits (188), Expect = 3e-16
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GGT + P+ +++ +S G CGG +I +LTAAHC + + +
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNG-PSKFCGGFLIRRNFVLTAAHCA----GRSITVTL 55
Query: 136 GKHNLNGVDKFEKTFKVE 153
G HN+ + + +V
Sbjct: 56 GAHNITEEEDTWQKLEVI 73
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 218 bits (559), Expect = 4e-70
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 25/224 (11%)
Query: 158 SSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAV 217
+ Q CGG++I + ILTAAHC+ + + +G E E+ +
Sbjct: 21 TLQDQRRVWCGGSLIDNKWILTAAHCVHDA--VSVVVYLGSAVQYEG---EAVVNSERII 75
Query: 218 LHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIP---DRDNAAASDWCVVTGWGAQNA 274
H F T+ ND+A++KI ++E+ +QPI +P + +N + W V+GWG
Sbjct: 76 SHSMF-NPDTYLNDVALIKIP-HVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQ--- 130
Query: 275 ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGP 334
+ + L+ VID + C Y I++S +C + G C GDSGGP
Sbjct: 131 --SNTDTVILQYTYNLVIDNDRCAQE--YPPG--IIVESTICGDT-SDGKSPCFGDSGGP 183
Query: 335 LACKIGGRFVLSGVVSWG--DGCAKKNKPGVYTRVSYYTKWIND 376
+ +L GVVS+ GC KP ++RV+ Y WI
Sbjct: 184 FVLS--DKNLLIGVVSFVSGAGCE-SGKPVGFSRVTSYMDWIQQ 224
Score = 77.2 bits (191), Expect = 1e-16
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+ G G +P+Q + + CGG++I + ILTAAHC+ + + +
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQ-RRVWCGGSLIDNKWILTAAHCVHDA--VSVVVYL 57
Query: 136 GKHNLNG 142
G
Sbjct: 58 GSAVQYE 64
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 224 bits (571), Expect = 9e-69
Identities = 67/327 (20%), Positives = 125/327 (38%), Gaps = 57/327 (17%)
Query: 97 SSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTF--KVEI 154
S +H C + D L Q I +S+ + G + + +I
Sbjct: 177 SKKDNEQHVC---KVKDMECLEDV-FYQMIDESQSLSLCGMVWEHRKGTDYHKQPWQAKI 232
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKV 213
V + G C GA++S+ +LTAAHC K +++ VG ++ ++
Sbjct: 233 SVIRPSK-GHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE--------KRDLEI 283
Query: 214 EKAVLHHRFRKEG--------THSNDIAVVKIRGNIEFNQYVQPICIPDRDNA-AASDWC 264
E + H + G + D+A++K++ +++ Q ++PIC+P + A
Sbjct: 284 EVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLP 343
Query: 265 VVTGWGAQ----------NAESIDDISNTLRAATVKVID---QNTCRSSAVYG------- 304
T Q A + + L V + + + +C A Y
Sbjct: 344 PTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVK 403
Query: 305 NSNQNILDSMLCAGYLNG--GIDACGGDSGGPLACKIGGRFVLSGVVSWG--DGCAKKNK 360
+ ++ + LC G ++ + C GDSGGPL RF+ GV+SWG D C + +
Sbjct: 404 DISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKR 463
Query: 361 --------PGVYTRVSYYTKWINDRIQ 379
+ + W+ +++Q
Sbjct: 464 QKQVPAHARDFHINLFQVLPWLKEKLQ 490
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 216 bits (552), Expect = 7e-66
Identities = 58/263 (22%), Positives = 99/263 (37%), Gaps = 50/263 (19%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKTFKVEKAVLHH 220
+ + C GA+ISD +LTAAHC + + S R+ VG K F +EKAV+
Sbjct: 244 KSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQW----GKEFLIEKAVISP 299
Query: 221 RFRK--------EGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAAS------DWCVV 266
F + +DIA++K+ ++ + + +PIC+P A + C
Sbjct: 300 GFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRD 359
Query: 267 TGWGAQNAESIDDISNTLRAATVKV-----IDQNTCR--------SSAVYGNSNQNILDS 313
N +S+ L + + + ++ +C + + + D
Sbjct: 360 HENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQ 419
Query: 314 MLCAGYLNGGIDACGGDSGGPLACKIGGRFVLSGVVSWG-----DGCAKKNK-------- 360
LC+G C G+SGG + + RF G+VSWG G A KN
Sbjct: 420 FLCSGTQ-EDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSK 478
Query: 361 ----PGVYTRVSYYTKWINDRIQ 379
+ + W+ +
Sbjct: 479 VPPPRDFHINLFRMQPWLRQHLG 501
Score = 85.0 bits (210), Expect = 3e-18
Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 25/138 (18%)
Query: 17 NNEIEGMSLNSITHDRVKRNGFPKFSTGFELHDLFTHRRAMT------CGSRVVNHEPQR 70
+++ LN + + LH +F H ++ CG
Sbjct: 172 KLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVG-------- 223
Query: 71 AANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-S 129
+ ++ PW V I+ + + C GA+ISD +LTAAHC + + S
Sbjct: 224 -----NMSANASDQERTPWHVTIKPK-----SQETCRGALISDQWVLTAAHCFRDGNDHS 273
Query: 130 KLRIIVGKHNLNGVDKFE 147
R+ VG +F
Sbjct: 274 LWRVNVGDPKSQWGKEFL 291
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 214 bits (545), Expect = 4e-63
Identities = 57/270 (21%), Positives = 109/270 (40%), Gaps = 51/270 (18%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLRIIVGKHNLNGVDKFEKT 210
+I V + G C GA++S+ +LTAAHC K +++ VG ++
Sbjct: 472 AKISVIRPSK-GHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE--------KRD 522
Query: 211 FKVEKAVLHHRFRKEG--------THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASD 262
++E + H + G + D+A++K++ +++ Q ++PIC+P + +
Sbjct: 523 LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRAL 582
Query: 263 ------WCVVTGWGAQNAESID-----DISNTLRAATVKVID---QNTCRSSAVYG---- 304
C A+ I + L V + + + +C A Y
Sbjct: 583 RLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYD 642
Query: 305 ---NSNQNILDSMLCAGYLNG--GIDACGGDSGGPLACKIGGRFVLSGVVSWG--DGCAK 357
+ ++ + LC G ++ + C GDSGGPL RF+ GV+SWG D C
Sbjct: 643 KVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKN 702
Query: 358 KNK--------PGVYTRVSYYTKWINDRIQ 379
+ + + + W+ +++Q
Sbjct: 703 QKRQKQVPAHARDFHINLFQVLPWLKEKLQ 732
Score = 67.8 bits (165), Expect = 2e-12
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 74 VKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISK-SKLR 132
+ T Y PWQ +I V + G C GA++S+ +LTAAHC K ++
Sbjct: 455 MVWEHRKGTDYHKQPWQAKISVIRPSK-GHESCMGAVVSEYFVLTAAHCFTVDDKEHSIK 513
Query: 133 IIVGKHNLN 141
+ VG +
Sbjct: 514 VSVGGEKRD 522
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 190 bits (485), Expect = 4e-60
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 12/155 (7%)
Query: 227 THSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGA-QNAESIDDISNTLR 285
+S+D+ +++++ + V+ + +P ++ S C +GWG+ + + + ++
Sbjct: 5 DYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGST-CEASGWGSIEPGPDDFEFPDEIQ 63
Query: 286 AATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGGRFVL 345
+ ++ C + + + + +SMLCAGYL GG D C GDSGGPL C G +
Sbjct: 64 CVQLTLLQNTFCADA--HPD---KVTESMLCAGYLPGGKDTCMGDSGGPLICN--GMWQ- 115
Query: 346 SGVVSWGDG-CAKKNKPGVYTRVSYYTKWINDRIQ 379
G+ SWG C NKP +YT++ +Y WI+D I
Sbjct: 116 -GITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 146 bits (370), Expect = 8e-44
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 279 DISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACK 338
+ + L+ A++ ++ C+ +G I D+M+CAG G+ +C GDSGGPL CK
Sbjct: 2 NTPDRLQQASLPLLSNTNCKKY--WGT---KIKDAMICAGA--SGVSSCMGDSGGPLVCK 54
Query: 339 IGGRFVLSGVVSWGDGCAKKNKPGVYTRVSYYTKWINDRIQ 379
G + L G+VSWG + PGVY RV+ W+ +
Sbjct: 55 KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 113 bits (286), Expect = 5e-31
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 152 VEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTF 211
V +Q ++ G H CGG++I++ ++TAAHC + ++ G+ + + +
Sbjct: 16 VSLQDKT----GFHFCGGSLINENWVVTAAHC---GVTTSDVVVAGEFDQGSSSEKIQKL 68
Query: 212 KVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDR-DNAAASDWCVVTGWG 270
K+ K + ++ T +NDI ++K+ F+Q V +C+P D+ AA CV TGWG
Sbjct: 69 KIAKVFKNSKYNSL-TINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWG 127
Query: 271 A 271
Sbjct: 128 L 128
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 74.9 bits (185), Expect = 3e-17
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 76 IVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIV 135
I+GG ++PWQV I QCGG +++ +LTAAHC + +
Sbjct: 1 IIGGRECEKNSHPWQVAIYHY-----SSFQCGGVLVNPKWVLTAAHCK----NDNYEVWL 51
Query: 136 GKHNLNGVDKFEKTFKVE 153
G+HNL + + F V
Sbjct: 52 GRHNLFENENTAQFFGVT 69
Score = 67.1 bits (165), Expect = 2e-14
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 162 QGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
QCGG +++ +LTAAHC + +G+HNL + + F V H
Sbjct: 21 YSSFQCGGVLVNPKWVLTAAHCK----NDNYEVWLGRHNLFENENTAQFFGVTADFPHPG 76
Query: 222 F 222
F
Sbjct: 77 F 77
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 74.6 bits (183), Expect = 1e-15
Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 34/215 (15%)
Query: 163 GEHQCGGAIISDTVILTAAHCLQ-GISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHR 221
G C G +I+ ILT HC+ S+S +N + + + +
Sbjct: 28 GGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSG 87
Query: 222 FRKEGTHSNDIAVVKIRGNIEFNQYVQPICIPDRDNAAASDWCVVTGWGAQNAESIDDIS 281
+ G D AV+K NI V I N + ++G+ S +S
Sbjct: 88 YINTGASQYDFAVIKTDTNI--GNTVGYRSIRQVTNLTGTTI-KISGYPGDKMRSTGKVS 144
Query: 282 NTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGDSGGPLACKIGG 341
+ +V D N ID G+SG + +
Sbjct: 145 QWEMSGSVTREDTN-----------------------LAYYTIDTFSGNSGSAM---LDQ 178
Query: 342 RFVLSGVVSWGDGCAKKNKPGVYTRVS-YYTKWIN 375
+ GV + G N + + + ++IN
Sbjct: 179 NQQIVGVHNAGYSNGTIN---GGPKATAAFVEFIN 210
Score = 40.0 bits (93), Expect = 6e-04
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 76 IVGGT-----STPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCL 123
+V G P+ + G C G +I+ ILT HC+
Sbjct: 1 VVIGDDGRTKVANTRVAPYNSIAYITF----GGSSCTGTLIAPNKILTNGHCV 49
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 66.3 bits (161), Expect = 7e-13
Identities = 40/219 (18%), Positives = 64/219 (29%), Gaps = 36/219 (16%)
Query: 155 QVRSSTGQGEHQCGGAIISDT---VILTAAHCL----QGISKSKLRIIVGKHNLNGVDKF 207
+V ST QG+ C I++ + TA HCL G G +
Sbjct: 11 KVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYDY--GESEH 68
Query: 208 EKTFKVEKAVLHHRFRKEGTHSNDIAVVKI--RGNIEFNQYVQPICIPDRDNAAASDWCV 265
+ E+ V + G +D A + +G Q V P N +
Sbjct: 69 G-VWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTA-SPIAFNQPRGQYYS 126
Query: 266 VTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGID 325
G+ A + + ++C +A + + C +
Sbjct: 127 AYGYPAAAPFNGQE--------------LHSCHGTATNDPMGSSTQ-GIPC--------N 163
Query: 326 ACGGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVY 364
GG SGGP G + S+G G Y
Sbjct: 164 MTGGSSGGPWFLGNGTGGAQNSTNSYGYTFLPNVMFGPY 202
Score = 35.4 bits (81), Expect = 0.016
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 86 AYPWQVEIQVRSSTGQGEHQCGGAIISDT---VILTAAHCL 123
+V ST QG+ C I++ + TA HCL
Sbjct: 3 PADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCL 43
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 55.4 bits (133), Expect = 6e-09
Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 39/185 (21%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
++ G G ++ +LT H + + +N + F E
Sbjct: 24 YIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAE 83
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIE---FNQYVQPICIPDRDNAAASDWCVVTGW-G 270
+ + D+A+VK N + + V+P + + + VTG+ G
Sbjct: 84 QITKYSG-------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPG 136
Query: 271 AQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGD 330
+ ++ + + + + Q GG+
Sbjct: 137 DKPVATMWESKGKITYLKGEAM-QYDL---------------------------STTGGN 168
Query: 331 SGGPL 335
SG P+
Sbjct: 169 SGSPV 173
Score = 47.3 bits (112), Expect = 3e-06
Identities = 8/68 (11%), Positives = 18/68 (26%)
Query: 86 AYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDK 145
+ ++ G G ++ +LT H + + +N +
Sbjct: 16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNY 75
Query: 146 FEKTFKVE 153
F E
Sbjct: 76 PNGGFTAE 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 1e-07
Identities = 69/392 (17%), Positives = 126/392 (32%), Gaps = 123/392 (31%)
Query: 5 PTFVFLCS---SILLNNEIEGMSLNSITHDRVKRNGFPKFSTGFELHDLFTHRRAMT-CG 60
P +L S S L + + H V GF +L ++ + T
Sbjct: 226 PDKDYLLSIPISCPLI------GVIQLAHYVVTAK-----LLGFTPGELRSYLKGATGHS 274
Query: 61 SRVVNHEPQRAANVKIVGGTSTP--YGAYPWQVE----IQVRSSTGQGEHQCGG------ 108
+V A V I S + + + I VR ++
Sbjct: 275 QGLV------TA-VAIAETDSWESFFVSVRKAITVLFFIGVRC------YEAYPNTSLPP 321
Query: 109 AIISDTV---------ILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEIQVRSS 159
+I+ D++ +L + +++ +++ V K N +VEI + +
Sbjct: 322 SILEDSLENNEGVPSPML----SISNLTQEQVQDYVNKTN----SHLPAGKQVEISLVNG 373
Query: 160 TGQGEHQCGGAIISDTVILT-AAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVL 218
+ ++++ L G++ + LR +G+D+ F K
Sbjct: 374 -------------AKNLVVSGPPQSLYGLNLT-LR---KAKAPSGLDQSRIPFSERKLKF 416
Query: 219 HHRFRKEGT--HSN--DIAVVKI-----RGNIEFNQYVQPICIPDRDNAAASDWCVVTGW 269
+RF + HS+ A I + N+ FN + I IP D SD V++G
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA--KDIQIPVYDTFDGSDLRVLSG- 473
Query: 270 GAQNAESIDDISNTLRAATVKVID-QNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDACG 328
SI + + + T + A + ILD G
Sbjct: 474 ------SI--SERIVDCIIRLPVKWETTTQFKATH------ILD--------------FG 505
Query: 329 --GDSG-GPLACKI----GGRFVLSGVVSWGD 353
G SG G L + G R +++G +
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 39.3 bits (91), Expect = 0.002
Identities = 43/217 (19%), Positives = 72/217 (33%), Gaps = 64/217 (29%)
Query: 125 GISKSKLR----IIVGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDT----- 175
G ++R ++ + ++G K EK FK EI S++ + G ++S T
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFK-EINEHSTSYTFRSEKG--LLSATQFTQP 1734
Query: 176 VILTAAHCLQGISKSKLRIIVGK----HNL---------NGVDKFEKTFKVEKAVLHHR- 221
+ KSK I H+L V E +V + +R
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV----VFYRG 1790
Query: 222 -------FRKEGTHSND--IAVVKIRGNIEFNQ-YVQPICIPDRDNAAASDWCVVTGW-- 269
R E SN IA+ R F+Q +Q + + TGW
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV----ERVGKR-----TGWLV 1841
Query: 270 --------GAQ-----NAESIDDISNTLRAATVKVID 293
Q + ++D ++N L ++ ID
Sbjct: 1842 EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 50.6 bits (120), Expect = 3e-07
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 16/145 (11%)
Query: 155 QVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVE 214
++ G G ++ +LT H + + +N + F E
Sbjct: 24 YIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAE 83
Query: 215 KAVLHHRFRKEGTHSNDIAVVKIRGNIE---FNQYVQPICIPDRDNAAASDWCVVTGWGA 271
+ + D+A+VK N + + V+P + + + VTG+
Sbjct: 84 QITKYSG-------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPG 136
Query: 272 QNAESIDDISNTLRAATVKVIDQNT 296
D T+ + K+
Sbjct: 137 ------DKPVATMWESKGKITYLKG 155
Score = 42.5 bits (99), Expect = 1e-04
Identities = 8/68 (11%), Positives = 18/68 (26%)
Query: 86 AYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDK 145
+ ++ G G ++ +LT H + + +N +
Sbjct: 16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNY 75
Query: 146 FEKTFKVE 153
F E
Sbjct: 76 PNGGFTAE 83
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 47.0 bits (110), Expect = 4e-06
Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 30/226 (13%)
Query: 156 VRSSTGQGEHQCGGAIISDT------VILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEK 209
V + + G C G+++++T LTA HC G + + I+V
Sbjct: 25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVY------------ 72
Query: 210 TFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIEFNQYVQP--ICIPDRDNAAASDW-CVV 266
+ + + + D ++ + + + + +NAA +
Sbjct: 73 -WNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPAFNLFW 131
Query: 267 TGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGIDA 326
GW ++ I+ K I +T + + L + G
Sbjct: 132 AGWDRRDQNYPGAIAIHHPNVAEKRISNSTS--PTSFVAWGGGAGTTHLNVQWQPSGGVT 189
Query: 327 CGGDSGGPLACKIGGRFVLSGVVSWGDG-CAKK--NKPGVYTRVSY 369
G SG P+ R + G + G C+ N+ Y RV
Sbjct: 190 EPGSSGSPI-YSPEKRVL--GQLHGGPSSCSATGTNRSDQYGRVFT 232
Score = 30.0 bits (66), Expect = 1.1
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 84 YGAYPWQVEIQ-VRSSTGQGEHQCGGAIISDT------VILTAAHCLQGISKS 129
+ I+ V + + G C G+++++T LTA HC G + +
Sbjct: 13 PEGDGRRDIIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTAST 65
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 45.3 bits (107), Expect = 1e-05
Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 14/152 (9%)
Query: 126 ISKSKLRIIVGKHNLNGVDKFEKTFKVEIQ-VRSSTGQGEHQCGGAIISDTVILTAAHCL 184
I K K + V + + V + +G G +I I+T H
Sbjct: 8 IRKLKQKFEVPPTDKELYTHITDNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVA 67
Query: 185 QGISKSKLRIIV-----GKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRG 239
+ +K+ II N F+ E+ + D+A++K++
Sbjct: 68 REAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQG-----LDLAIIKLKP 122
Query: 240 N---IEFNQYVQPICIPDRDNAAASDWCVVTG 268
N +QP IPD + A D + G
Sbjct: 123 NEKGESAGDLIQPANIPDHIDIAKGDKYSLLG 154
Score = 32.6 bits (74), Expect = 0.15
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 13/95 (13%)
Query: 74 VKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRI 133
I +PY + V + +G G +I I+T H + +K+ I
Sbjct: 26 THITDNARSPYNS--------VGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNI 77
Query: 134 IV-----GKHNLNGVDKFEKTFKVEIQVRSSTGQG 163
I N F+ E S GQG
Sbjct: 78 IFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQG 112
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 38.3 bits (89), Expect = 0.002
Identities = 12/107 (11%), Positives = 38/107 (35%), Gaps = 12/107 (11%)
Query: 169 GAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKF----EKTFKVEKAVLHHRFRK 224
G +I +LT H + + ++ + ++V++ + ++
Sbjct: 59 GVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEIL-----QE 113
Query: 225 EGTHSNDIAVVKIRGN---IEFNQYVQPICIPDRDNAAASDWCVVTG 268
D+A+++++ + + + P I ++ D + G
Sbjct: 114 PFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIG 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 43/365 (11%), Positives = 95/365 (26%), Gaps = 99/365 (27%)
Query: 39 PKFSTGFELHDL--FTHRRAMTCGSRVVNH---EPQRAANVKIVGGTSTPYGA------- 86
F F+ D+ + ++ ++H + + T
Sbjct: 27 DAFVDNFDCKDVQDMP-KSILS--KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 87 -------YPW-----QVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRII 134
Y + + E + S + + + +D +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---------------- 127
Query: 135 VGKHNLNGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRI 194
K+N++ + + K + +++R + G+ T + CL K + ++
Sbjct: 128 --KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKTW-VALDVCLS--YKVQCKM 180
Query: 195 IVGKH--NLNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGNIE---------F 243
NL + E ++ + L ++ T +D + I+ I
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSS-NIKLRIHSIQAELRRLL 238
Query: 244 NQYVQPICIPDRDNAAASDWCVVTGWGAQNAESID----------DISNT--LRAATVKV 291
C+ N V A+ + + T L AAT
Sbjct: 239 KSKPYENCLLVLLN--------V--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 292 IDQNTCRSSAVYGNSNQNILDSMLCAGYLNGGID-----ACGGDSGGPLACKIGGRFVLS 346
I + + L YL+ + P I +
Sbjct: 289 ISLDHHSMTLTPDEVKS------LLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRD 339
Query: 347 GVVSW 351
G+ +W
Sbjct: 340 GLATW 344
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 35.1 bits (81), Expect = 0.019
Identities = 30/203 (14%), Positives = 53/203 (26%), Gaps = 54/203 (26%)
Query: 141 NGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHN 200
V + K + G G ++ I+T H + K R+ +
Sbjct: 2 KNVKEITDATKEPYNSVVAFVGGT----GVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSS 57
Query: 201 LNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRG----NIEFNQYVQPICIPDRD 256
+ + D+A+V + + FN+ V D
Sbjct: 58 KGKGGGNYDVKDIVEY----------PGKEDLAIVHVHETSTEGLNFNKNVSYTKFA--D 105
Query: 257 NAAASDWCVVTG--WGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILDSM 314
A D V G GAQ + + + + + G +
Sbjct: 106 GAKVKDRISVIGYPKGAQTKYKMFESTG---------------TINHISGTFME------ 144
Query: 315 LCAGYLNGGIDAC--GGDSGGPL 335
DA G+SG P+
Sbjct: 145 ---------FDAYAQPGNSGSPV 158
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 34.3 bits (79), Expect = 0.033
Identities = 26/136 (19%), Positives = 40/136 (29%), Gaps = 25/136 (18%)
Query: 141 NGVDKFEKTFKVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHN 200
V + + T S G +I I+T H + K RI +
Sbjct: 3 KNVTQVKDTNNFPYNGVVSFKDAT----GFVIGKNTIITNKHVSKD-YKVGDRITA---H 54
Query: 201 LNGVDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKIRGN--------IEFNQYVQPICI 252
NG +K++ + DI+V+ I FN+ VQ
Sbjct: 55 PNGDKGNGGIYKIKSIS-------DYPGDEDISVMNIEEQAVERGPKGFNFNENVQA--F 105
Query: 253 PDRDNAAASDWCVVTG 268
+A D V G
Sbjct: 106 NFAKDAKVDDKIKVIG 121
Score = 27.4 bits (61), Expect = 7.4
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 82 TPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTAAHCLQGISKSKLRIIVGKHNLN 141
+P+ + + +TG +I I+T H + K RI + N
Sbjct: 9 KDTNNFPYNGVVSFKDATG--------FVIGKNTIITNKHVSKD-YKVGDRITA---HPN 56
Query: 142 GVDKFEKTFKVEI 154
G +K++
Sbjct: 57 GDKGNGGIYKIKS 69
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 32.5 bits (74), Expect = 0.15
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 21/108 (19%)
Query: 169 GAIISDTVILTAAHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEKAVLHHRFRKEGTH 228
G ++ ILT H + K RI ++ G K+
Sbjct: 26 GFVVGKNTILTNKHVSKN-YKVGDRITAHPNSDKGNGGIYSIKKIINY----------PG 74
Query: 229 SNDIAVVKIRGN--------IEFNQYVQPICIPDRDNAAASDWCVVTG 268
D++V+++ FN V P A A + V G
Sbjct: 75 KEDVSVIQVEERAIERGPKGFNFNDNVTPFKYA--AGAKAGERIKVIG 120
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 29.2 bits (65), Expect = 1.8
Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 16/131 (12%)
Query: 253 PDRDNAAASDWCVVTGWGAQNAESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNILD 312
P D A S + + + T+R +T + CRS G I
Sbjct: 60 PGNDRAWVS---LTSAQTLLPRVANGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITA 116
Query: 313 SMLCAGYLNGGI------DAC--GGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGVY 364
+ A Y G + +AC GDSGG G+ GV+S G+ + N G+
Sbjct: 117 KNVTANYAEGAVRGLTQGNACMGRGDSGGSWI-TSAGQAQ--GVMSGGNVQSNGNNCGIP 173
Query: 365 T--RVSYYTKW 373
R S + +
Sbjct: 174 ASQRSSLFERL 184
>1p5v_A CAF1M chaperone, chaperone protein CAF1M, CAF1M; chaperone-target
complex, chaperone-subunit complex, protein fiber; 1.70A
{Yersinia pestis} SCOP: b.1.11.1 b.7.2.1 PDB: 1p5u_A
1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A
Length = 235
Score = 29.0 bits (64), Expect = 2.5
Identities = 24/192 (12%), Positives = 50/192 (26%), Gaps = 15/192 (7%)
Query: 60 GSRVVNHEPQRAANVKIVGGTSTPYGAYPWQVEIQVRSSTGQGEHQCGGAIISDTVILTA 119
SR++ V + P IQ R E + + +
Sbjct: 18 ESRIIYPLDAAGVMVSVKNTQDYPVL-------IQSRIYDENKEKESEDPFVVTPPLFR- 69
Query: 120 AHCLQGISKSKLRIIVGKHNLNGVDKFEKTFKVEIQ-VRSSTGQGEHQCGGAIISDTVIL 178
L ++ LRI DK E + ++ +
Sbjct: 70 ---LDAKQQNSLRIAQAGGVFPR-DK-ESLKWLCVKGIPPKDEDIWVDDATNKQKFNPDK 124
Query: 179 TAAHCLQGISKSKLRIIVGKHNLNG-VDKFEKTFKVEKAVLHHRFRKEGTHSNDIAVVKI 237
+Q + ++++V + L G +F + + +I +
Sbjct: 125 DVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTF 184
Query: 238 RGNIEFNQYVQP 249
G + Y+ P
Sbjct: 185 GGKSIPSHYIPP 196
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 28.3 bits (63), Expect = 3.0
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 16/125 (12%)
Query: 253 PDRDNAAASDWCVVTGWGAQNA-ESIDDISNTLRAATVKVIDQNTCRSSAVYGNSNQNIL 311
P D G + + + + +A V+ Q +S + ++ +
Sbjct: 59 PTNDYGIVR---YTDGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVT 115
Query: 312 DSMLCAGYLNGGI------DAC--GGDSGGPLACKIGGRFVLSGVVSWGDGCAKKNKPGV 363
+ Y +G + AC GGDSGG G L G+ S GC+ +
Sbjct: 116 AVNVTVNYGDGPVYNMVRTTACSAGGDSGGAH---FAGSVAL-GIHSGSSGCSGTAGSAI 171
Query: 364 YTRVS 368
+ V+
Sbjct: 172 HQPVT 176
>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, thermophilic
enzyme, degenerate DNA recognition, hydrolase/DNA
complex; HET: DNA; 1.70A {Geobacillus
stearothermophilus} SCOP: c.52.1.11
Length = 323
Score = 28.2 bits (62), Expect = 4.2
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 287 ATVKVIDQNT------CRSSAVYGNSNQNILDSMLCAGYLNGGIDACGGD 330
TV ++ +N C + L G L GGID G D
Sbjct: 202 ITVSLVKKNVDICLFNCEPEIYTPQKVHQQPEKYLLLGELKGGIDPAGAD 251
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing,
translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB:
2j3m_A*
Length = 572
Score = 27.9 bits (63), Expect = 5.9
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 8/29 (27%)
Query: 131 LRIIVGKHNLNGVDKFEKTFKVEIQVRSS 159
+RI VGK ++G VE++++ +
Sbjct: 526 IRITVGKKAVDG--------VVEVKIKRT 546
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,865,952
Number of extensions: 353310
Number of successful extensions: 1638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 219
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)