Query psy1734
Match_columns 610
No_of_seqs 239 out of 386
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 19:45:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2175|consensus 100.0 2.6E-70 5.6E-75 583.3 15.6 361 116-491 3-457 (458)
2 PF04802 SMK-1: Component of I 100.0 6.4E-45 1.4E-49 356.4 2.6 160 129-291 1-187 (193)
3 cd00835 RanBD Ran-binding doma 93.6 0.13 2.8E-06 47.2 5.4 63 3-65 51-122 (122)
4 PF00568 WH1: WH1 domain; Int 93.1 0.2 4.3E-06 45.3 5.8 60 3-63 51-110 (111)
5 cd00837 EVH1 EVH1 (Enabled, Va 90.5 0.61 1.3E-05 41.8 5.7 60 2-62 43-102 (104)
6 PF00638 Ran_BP1: RanBP1 domai 74.2 3.5 7.6E-05 37.5 3.5 63 3-65 50-121 (122)
7 smart00461 WH1 WASP homology r 71.3 8.6 0.00019 34.5 5.3 50 12-62 55-104 (106)
8 cd00020 ARM Armadillo/beta-cat 63.7 15 0.00032 31.7 5.2 57 404-461 4-60 (120)
9 cd01207 Ena-Vasp Enabled-VASP- 59.4 20 0.00044 32.7 5.3 53 9-62 53-105 (111)
10 COG3479 Phenolic acid decarbox 53.8 9 0.0002 36.1 2.1 20 33-52 66-85 (175)
11 KOG2085|consensus 49.0 24 0.00052 39.1 4.7 169 103-289 147-334 (457)
12 PF10274 ParcG: Parkin co-regu 45.0 66 0.0014 32.0 6.7 78 414-499 87-181 (183)
13 smart00160 RanBD Ran-binding d 42.5 47 0.001 30.9 5.1 59 3-61 61-128 (130)
14 PF11707 Npa1: Ribosome 60S bi 35.7 1.2E+02 0.0027 32.4 7.7 79 381-460 29-110 (330)
15 smart00185 ARM Armadillo/beta- 35.0 55 0.0012 22.8 3.4 36 400-435 5-40 (41)
16 PF05804 KAP: Kinesin-associat 33.7 1.1E+02 0.0024 36.6 7.3 73 383-462 312-384 (708)
17 cd00020 ARM Armadillo/beta-cat 32.0 1.3E+02 0.0029 25.5 6.1 62 400-462 42-103 (120)
18 PF13925 Katanin_con80: con80 31.8 2.3E+02 0.005 27.3 8.1 76 383-472 45-120 (164)
19 PF00514 Arm: Armadillo/beta-c 30.6 1E+02 0.0022 22.2 4.2 35 400-434 5-39 (41)
20 cd03567 VHS_GGA VHS domain fam 28.7 2.7E+02 0.0058 26.3 7.8 94 406-503 37-132 (139)
21 PRK10167 hypothetical protein; 28.4 2E+02 0.0043 28.3 7.0 90 407-510 27-126 (169)
22 PF10257 RAI16-like: Retinoic 24.8 82 0.0018 34.3 4.0 63 401-466 3-67 (353)
23 PF08926 DUF1908: Domain of un 23.6 2E+02 0.0043 30.5 6.3 48 136-194 194-241 (282)
24 PF06334 Orthopox_A47: Orthopo 22.7 24 0.00052 34.8 -0.5 39 154-192 140-180 (244)
No 1
>KOG2175|consensus
Probab=100.00 E-value=2.6e-70 Score=583.25 Aligned_cols=361 Identities=43% Similarity=0.662 Sum_probs=331.0
Q ss_pred cCChhHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHcCchhhhHHhhccceeeeeeeecccCCCC
Q psy1734 116 LASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPAL 195 (610)
Q Consensus 116 ~~s~~~re~l~~~i~~~~Yi~kL~~lF~~cEdle~~~~Lh~L~~I~k~iillNd~~i~E~l~sDe~i~~vvG~LEYDp~~ 195 (610)
..++..|++++.+|.+++||+||+++|+.|||+++++|||++|+|+|+|+++|+..|+|.||+|++||+|+|||||||++
T Consensus 3 ~~~~~~r~~~~~~ie~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~ 82 (458)
T KOG2175|consen 3 LQTDQRREKLVLALENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAV 82 (458)
T ss_pred CccHHHHHHHHHHHhcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhcccCCeEEEEEEcCCchhhhc------------------------cccce-eeEeccccccceeEEeeccc
Q psy1734 196 TSPKRHRHYLRTNSKVKLYALNADRQWDDK------------------------GTGHV-SSIYVEKHKGMSLLVRAEAD 250 (610)
Q Consensus 196 p~~k~HR~fL~~~~~FKeVVpi~d~~~~~k------------------------~~s~l-S~I~fnq~eIV~~Lv~sq~D 250 (610)
|++|+||+||...++||+++|+.|+.+..| +++++ |+|++|+++||++| |+|
T Consensus 83 ~~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~l---qed 159 (458)
T KOG2175|consen 83 PQSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLL---QED 159 (458)
T ss_pred CChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhh---hcC
Confidence 999999999999999999999999999887 56778 99999999999999 999
Q ss_pred chhHHhhhcc-C--CchHHhhhchhhhhhhhhhhhhccCcccccc-------------------hhh------HHHHHHh
Q psy1734 251 GTLLLESKIQ-T--DTAYQKQQDTLIVWSERDNYDLALSFQEKAG-------------------CDE------IWEKICQ 302 (610)
Q Consensus 251 ~~fL~elf~~-~--~~~~~kr~d~v~fl~E~c~~~k~LQ~q~r~g-------------------~dd------i~dil~~ 302 (610)
..|+.+||++ + ++..+||++++.|++|+|.++++||+|.+++ +.| .++++..
T Consensus 160 ~~~l~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~ 239 (458)
T KOG2175|consen 160 EKFLIELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILAR 239 (458)
T ss_pred chHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999 4 8888999999999999999999999999983 111 1899999
Q ss_pred hhcCCCccchhhhhhccch-----hhhh----hcc-cCCCCCC------------CCCCCCcch--hhHHHHhhcc----
Q psy1734 303 VQGKDPSVEITQDIIEESE-----DERF----DDM-SDGSPPI------------ELPPCEINR--LEEIKEVRLN---- 354 (610)
Q Consensus 303 i~e~dPs~v~R~~i~~q~e-----d~ll----~~m-~d~d~~l------------qLdp~~~~~--~e~~~~~Fl~---- 354 (610)
+++++|.++ |++.++++- ..++ ++| +|.+|.+ ++||+++.. .++ ++|++
T Consensus 240 ~ve~~~~~i-~~~~~~~~~~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~~~~--se~l~~~~~ 316 (458)
T KOG2175|consen 240 LVEMSPSMI-RSFTLGEALDPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLASEK--SEFLNFFYK 316 (458)
T ss_pred HHhcCHHHH-HHHHHHhhcCchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCccchh--HHHhhhhhc
Confidence 999999999 999999872 2222 555 8888776 289998544 355 78887
Q ss_pred ---cccccccccCcccccccccccchHHHHHHHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHH
Q psy1734 355 ---SSLLNPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFM 431 (610)
Q Consensus 355 ---~~L~~Pll~~~~~~~~~~~~~~~~~ll~~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~ 431 (610)
+.+.+|...++.+. +.++.++.++++++||++||+|+||+|++++++++||++|++++|++|+++|+||.
T Consensus 317 ~c~~~~~~p~~~~~~s~-------~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~ 389 (458)
T KOG2175|consen 317 HCMHSLSAPLVGNTSSN-------QSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYL 389 (458)
T ss_pred cccccCCCcchhhcccc-------cccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhh
Confidence 78888887765543 56778999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccChHHHHHHHHhcCchHHHHHHHhhcCCCcchhccc----------cchHHHHHHHhhhhhcccc
Q psy1734 432 RKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSA----------EDIKVLCSHVVETYGDELE 491 (610)
Q Consensus 432 R~iv~l~Defy~ryiik~nLf~PVl~~f~~n~~r~NLlnSA----------Enik~Li~hlve~y~~~l~ 491 (610)
|++++|+|+||+|||+|+ |+|++++|.+||.||||+||| |++|+|++|+||+||+.++
T Consensus 390 ~~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~ 457 (458)
T KOG2175|consen 390 RKIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA 457 (458)
T ss_pred hccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence 999999999999999999 999999999999999999999 9999999999999998875
No 2
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=100.00 E-value=6.4e-45 Score=356.40 Aligned_cols=160 Identities=37% Similarity=0.603 Sum_probs=153.9
Q ss_pred HhhhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHcCchhhhHHhhccceeeeeeeecccCCCCCCcc-cchhhccc
Q psy1734 129 IESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPK-RHRHYLRT 207 (610)
Q Consensus 129 i~~~~Yi~kL~~lF~~cEdle~~~~Lh~L~~I~k~iillNd~~i~E~l~sDe~i~~vvG~LEYDp~~p~~k-~HR~fL~~ 207 (610)
|++++||+||+++|++||+++|+++||+||+|||+||+||+++|+|+|++|++||+|||||||||++|++| +||+||++
T Consensus 1 ~~~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~~i~e~llsde~i~~vvG~LEYDp~~~~~ka~hR~fL~~ 80 (193)
T PF04802_consen 1 IENENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDPEIFEILLSDENIMDVVGILEYDPEFPQPKANHREFLKE 80 (193)
T ss_pred CcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCchHHHHHhchHHHHHHhhhhccCCcccccccchHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCeEEEEEEcCCchhhhc----------------------cccce-eeEeccccccceeEEeecccchhHHhhhcc-C--
Q psy1734 208 NSKVKLYALNADRQWDDK----------------------GTGHV-SSIYVEKHKGMSLLVRAEADGTLLLESKIQ-T-- 261 (610)
Q Consensus 208 ~~~FKeVVpi~d~~~~~k----------------------~~s~l-S~I~fnq~eIV~~Lv~sq~D~~fL~elf~~-~-- 261 (610)
+++|||||||+|+++++| +++++ |+||+|+++||++| ++|+.||.++|.. +
T Consensus 81 ~~~FkeVIpi~~~~l~~kIhqtyRlqYLkDvvL~r~lDd~~~s~L~s~I~~n~~~Iv~~l---~~d~~fL~~Lf~~l~~~ 157 (193)
T PF04802_consen 81 KAKFKEVIPIPDPELLSKIHQTYRLQYLKDVVLPRFLDDNTFSTLNSLIFFNQVEIVNML---QDDENFLEELFAILKDP 157 (193)
T ss_pred CCCCceeeecCCHHHHHHHHHHHhHHHHHHHHcccccccHHHHHHHHHHHHhHHHHHHHH---HhCHHHHHHHHHHhcCC
Confidence 999999999999999877 88999 99999999999999 9999999999999 4
Q ss_pred CchHHhhhchhhhhhhhhhhhhccCccccc
Q psy1734 262 DTAYQKQQDTLIVWSERDNYDLALSFQEKA 291 (610)
Q Consensus 262 ~~~~~kr~d~v~fl~E~c~~~k~LQ~q~r~ 291 (610)
+++.++|++++.|+||+|+++|+||+++|.
T Consensus 158 ~~~~~~r~d~v~fL~e~c~~ak~lq~~~r~ 187 (193)
T PF04802_consen 158 STSDERRRDGVKFLHEFCSLAKNLQPQSRS 187 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCcchHH
Confidence 667899999999999999999999999884
No 3
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=93.62 E-value=0.13 Score=47.20 Aligned_cols=63 Identities=29% Similarity=0.362 Sum_probs=54.5
Q ss_pred EEEEeCCCCCcceeecccCCccchhcc--CeEEEEecCCCC-------ceeeecccccchhHHHHHHHHHhc
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQ--DTLIVWSERDNY-------DLALSFQEKAGCDEIWEKICQVQG 65 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQq--eTlIvW~e~~~~-------dlALSFQe~~GC~~iwe~I~~vQ~ 65 (610)
||+|.+..+.++|++.|.+...|++++ +.-++|+-.+.. -++|.|..++.++++++.|..+|.
T Consensus 51 ivmR~d~~~kv~lN~~i~~~~~~~~~~~~~k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~~~ 122 (122)
T cd00835 51 LLMRRDQVLKLCLNHKLVPGMKLQPMGNSDKSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEAIEEAKK 122 (122)
T ss_pred EEEEeCCccEEEEeeEecCCcEEeecCCCCcEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHHHHHhhC
Confidence 688888889999999999999999999 899999733322 289999999999999999988874
No 4
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=93.13 E-value=0.2 Score=45.28 Aligned_cols=60 Identities=17% Similarity=0.343 Sum_probs=52.2
Q ss_pred EEEEeCCCCCcceeecccCCccchhccCeEEEEecCCCCceeeecccccchhHHHHHHHHH
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQV 63 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQe~~GC~~iwe~I~~v 63 (610)
|.+.+-.+++++++..|.++-.|+++..+...|.+.+. -.+|+|++.+-+....+.|.+.
T Consensus 51 I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~~~-~~GLnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 51 IRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDDDC-VYGLNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp EEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEETTC-EEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeCCe-EEEEecCCHHHHHHHHHHHhcc
Confidence 44555568999999999999999999999999999875 8999999999999999888764
No 5
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=90.52 E-value=0.61 Score=41.76 Aligned_cols=60 Identities=12% Similarity=0.242 Sum_probs=52.7
Q ss_pred eEEEEeCCCCCcceeecccCCccchhccCeEEEEecCCCCceeeecccccchhHHHHHHHH
Q psy1734 2 SLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQ 62 (610)
Q Consensus 2 ~l~V~sE~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQe~~GC~~iwe~I~~ 62 (610)
.|.++...++.++++..|..+-.|.+-..+...|.+.++ =++|+|++.+.+....+.+++
T Consensus 43 ~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~~~-~~GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 43 RIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDDNC-VYGLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred EEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcCCc-EEEEeeCCHHHHHHHHHHHHh
Confidence 356777778999999999999999999999999999964 599999999999988777654
No 6
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=74.21 E-value=3.5 Score=37.48 Aligned_cols=63 Identities=21% Similarity=0.435 Sum_probs=47.9
Q ss_pred EEEEeCCCCCcceeecccCCccchhcc--CeEEEEe--c---CC--CCceeeecccccchhHHHHHHHHHhc
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQ--DTLIVWS--E---RD--NYDLALSFQEKAGCDEIWEKICQVQG 65 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQq--eTlIvW~--e---~~--~~dlALSFQe~~GC~~iwe~I~~vQ~ 65 (610)
||+|.+.-+.++|+++|.++..|+..+ +.-++|+ + .+ -.-+++.|..++-++++...|.+.|.
T Consensus 50 lvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~~i~e~~~ 121 (122)
T PF00638_consen 50 LVMRRDGTGKVLLNHPIFKGMKLKPMKGSEKSLVWTAIDYADEEGKPETYLIRFKSAEDADEFKKKIEEAKE 121 (122)
T ss_dssp EEEEETTTTEEEEEEE--TTC-EEESTTTTTEEEEEEEECTTSSSEEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred EEEEEcccCceeEEEEecCCceecccccCCcEEEEEeccccCCCCceEEEEEEECCHHHHHHHHHHHHHHhc
Confidence 789999889999999999999998766 4578893 2 22 23479999999999999999988774
No 7
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=71.28 E-value=8.6 Score=34.55 Aligned_cols=50 Identities=12% Similarity=0.361 Sum_probs=45.4
Q ss_pred CcceeecccCCccchhccCeEEEEecCCCCceeeecccccchhHHHHHHHH
Q psy1734 12 TLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQ 62 (610)
Q Consensus 12 ~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQe~~GC~~iwe~I~~ 62 (610)
.++++..|..+-.|.+.-.+.-.|.+. ++-..|+|++.+.+....+.+++
T Consensus 55 ~vv~e~ely~~~~y~~~~~~Fh~f~~~-~~~~GLnF~se~EA~~F~~~v~~ 104 (106)
T smart00461 55 KVIWNQELYKNFKYNQATPTFHQWADD-KCVYGLNFASEEEAKKFRKKVLK 104 (106)
T ss_pred eEEEEEeccCCCEEeecCCceEEEEeC-CeEEEeecCCHHHHHHHHHHHHh
Confidence 899999999999999999999999984 56699999999999988887764
No 8
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=63.71 E-value=15 Score=31.69 Aligned_cols=57 Identities=7% Similarity=0.078 Sum_probs=46.3
Q ss_pred HhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhh
Q psy1734 404 LNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 461 (610)
Q Consensus 404 l~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~ 461 (610)
...+++..++.++...+..++..|++.+..+.... +-+..++++.+.+.++++++..
T Consensus 4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~ 60 (120)
T cd00020 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKS 60 (120)
T ss_pred HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhC
Confidence 45667888888998888889999999999966554 5555677889999999998865
No 9
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=59.41 E-value=20 Score=32.74 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=46.4
Q ss_pred CCCCcceeecccCCccchhccCeEEEEecCCCCceeeecccccchhHHHHHHHH
Q psy1734 9 ADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQ 62 (610)
Q Consensus 9 ~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQe~~GC~~iwe~I~~ 62 (610)
.|+.+++++.|.++-.|.+.--+...|.+.+ +-..|+|+..+.+...=+.|.+
T Consensus 53 ~~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~~-~v~GLnF~Se~eA~~F~~~v~~ 105 (111)
T cd01207 53 QDHQVVINCAIVKGLKYNQATPTFHQWRDAR-QVYGLNFGSKEDATMFASAMLS 105 (111)
T ss_pred CCCcEEEEEEecCCceeeecCCcceeeecCC-eEEeeccCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999986 7899999999999876555543
No 10
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.84 E-value=9 Score=36.10 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=17.7
Q ss_pred EEEecCCCCceeeecccccc
Q psy1734 33 IVWSERDNYDLALSFQEKAG 52 (610)
Q Consensus 33 IvW~e~~~~dlALSFQe~~G 52 (610)
++|+||.|+|.||.|.-.++
T Consensus 66 vsWtEPTGTdVaL~f~pne~ 85 (175)
T COG3479 66 VSWTEPTGTDVALTFNPNEY 85 (175)
T ss_pred EEeeCCCCceEEEEeccccc
Confidence 57999999999999987665
No 11
>KOG2085|consensus
Probab=49.03 E-value=24 Score=39.12 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHhhcCChhHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCc----ccHHHHHHHH---HHHHHcCchhhhHH
Q psy1734 103 NRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENL----PGLHCLYDIL---KSIFLLNKTQLLDI 175 (610)
Q Consensus 103 ~nL~eI~~~i~~~~~s~~~re~l~~~i~~~~Yi~kL~~lF~~cEdle~~----~~Lh~L~~I~---k~iillNd~~i~E~ 175 (610)
..|..+.+.+--...||.-.-.+|+-.+++.+|-||++||+. ||-.-- .-||++|-=+ |..|..--+.||=.
T Consensus 147 phLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdS-EDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~ 225 (457)
T KOG2085|consen 147 PHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDS-EDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLR 225 (457)
T ss_pred hHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhh
Confidence 468888777666666776667888888999999999999953 322221 2356665522 22233333344433
Q ss_pred hh-ccce------eeeeeeecccCCCCCCcccchhhcccCCeEEEEEEcCCchhhhccccceeeEeccccccceeEEeec
Q psy1734 176 LF-SDDI------ILDVVGCLEYDPALTSPKRHRHYLRTNSKVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAE 248 (610)
Q Consensus 176 l~-sDe~------i~~vvG~LEYDp~~p~~k~HR~fL~~~~~FKeVVpi~d~~~~~k~~s~lS~I~fnq~eIV~~Lv~sq 248 (610)
++ +-+. +++++|...--=+.|-...|+-||. |..+|+.-+.=..-....|+ .+||+++ +
T Consensus 226 FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~-----rvLipLhk~k~l~~yh~QLa------YcivQfv---e 291 (457)
T KOG2085|consen 226 FIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLV-----RVLIPLHKPKSLSLYHKQLA------YCIVQFV---E 291 (457)
T ss_pred hcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHH-----HhhhccccCCCccccccccc------eeeeeee---c
Confidence 32 3333 3556677777777777558999995 45677764321111222233 3589999 8
Q ss_pred ccchhHHhhhcc-----CCchHHhhhchhhhhhhhhhhhhccCccc
Q psy1734 249 ADGTLLLESKIQ-----TDTAYQKQQDTLIVWSERDNYDLALSFQE 289 (610)
Q Consensus 249 ~D~~fL~elf~~-----~~~~~~kr~d~v~fl~E~c~~~k~LQ~q~ 289 (610)
.|.+....+..- +-|.- ..-|.|++|+..+-.+.++.+
T Consensus 292 Kd~kl~~~VIrglLK~WP~tnS---~KEVmFL~ElEEILe~iep~e 334 (457)
T KOG2085|consen 292 KDPKLTETVIRGLLKYWPKTNS---SKEVMFLNELEEILEVIEPSE 334 (457)
T ss_pred cCccccHHHHHHHHHhcCCCCC---cceeeeHhhHHHHHHhcCHHH
Confidence 887644333221 11211 223566676666555555433
No 12
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=44.96 E-value=66 Score=32.02 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=46.4
Q ss_pred HHhccccchhhhhHHHHHHHHhccCh------HHHHHHHHhcCchHHHHHHHhhcCCCcchhc-----cccchHHHHH--
Q psy1734 414 VLMKSCHTFLVLSSLRFMRKIIAMKD------DFYNRYIIKGHLFQPVIDTFNRNKGRYNLLD-----SAEDIKVLCS-- 480 (610)
Q Consensus 414 ~Ll~~~~k~L~L~AlRf~R~iv~l~D------efy~ryiik~nLf~PVl~~f~~n~~r~NLln-----SAEnik~Li~-- 480 (610)
.-|++++.-...++|+.++.+|...+ --|+|+| =|+++.|+... .|+=. ..+|++.+|.
T Consensus 87 ~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqL------Lp~ln~f~~k~--~n~gd~i~y~~~~~~~dlI~et 158 (183)
T PF10274_consen 87 RALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQL------LPVLNLFKNKN--VNLGDGIDYRKRKNLGDLIQET 158 (183)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH------HHHHHHHHhcc--cCCCcccccccccchhHHHHHH
Confidence 34567777777777787777754433 2366665 39999988643 22221 1167777776
Q ss_pred -HHhhhhh--cccccccc-hhhH
Q psy1734 481 -HVVETYG--DELESIHY-VQTF 499 (610)
Q Consensus 481 -hlve~y~--~~l~~i~y-v~tf 499 (610)
.+.|++| +.+..|.| |+|+
T Consensus 159 L~~lE~~GG~dA~~nIKy~IPTY 181 (183)
T PF10274_consen 159 LELLERNGGPDAFINIKYMIPTY 181 (183)
T ss_pred HHHHHHhcChhHHHHHHHhCCCC
Confidence 3556666 44555553 4554
No 13
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=42.50 E-value=47 Score=30.89 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=46.4
Q ss_pred EEEEeCCCCCcceeecccCCccchhccC--eEEEEecCC-------CCceeeecccccchhHHHHHHH
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQD--TLIVWSERD-------NYDLALSFQEKAGCDEIWEKIC 61 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQqe--TlIvW~e~~-------~~dlALSFQe~~GC~~iwe~I~ 61 (610)
||+|.+..+.++|++.|.++-.|++... .-.+|+-.+ -.-+++-|-.++.++..++-|.
T Consensus 61 ivmR~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~~~ 128 (130)
T smart00160 61 IVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNIFE 128 (130)
T ss_pred EEEEECCCceEEeccEecCCcEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHHHH
Confidence 6888888899999999999999987654 456784322 1338999999999998887664
No 14
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=35.72 E-value=1.2e+02 Score=32.44 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=52.5
Q ss_pred HHHHHHhhHH--HHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchH-HHHH
Q psy1734 381 LGVILELLSF--CVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQ-PVID 457 (610)
Q Consensus 381 l~~ileLL~F--Cv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~-PVl~ 457 (610)
+.+++..++- ....|...+-..||++. ++.+-+-+++....++.+|+|.|+.+|.-+..-+-|.+.+.-=|. |++.
T Consensus 29 L~~~l~~ls~~~~~~~~g~~l~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~ 107 (330)
T PF11707_consen 29 LALLLKKLSSDLSFQSYGLELIRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLP 107 (330)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHH
Confidence 4444444433 34455556666788887 788888899988889999999999999965555555554443333 3444
Q ss_pred HHh
Q psy1734 458 TFN 460 (610)
Q Consensus 458 ~f~ 460 (610)
-+.
T Consensus 108 kll 110 (330)
T PF11707_consen 108 KLL 110 (330)
T ss_pred HHh
Confidence 443
No 15
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=34.99 E-value=55 Score=22.83 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=29.7
Q ss_pred hHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHh
Q psy1734 400 KNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKII 435 (610)
Q Consensus 400 K~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv 435 (610)
|..+...+.++.++.|+++.+.-++-.|+..+|++.
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 556777888899999999877778889999888764
No 16
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=33.74 E-value=1.1e+02 Score=36.63 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=56.9
Q ss_pred HHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhhc
Q psy1734 383 VILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRN 462 (610)
Q Consensus 383 ~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~n 462 (610)
-+++=|+++.+. |.-+...+++.++++|+.+.+.-++-.|+|.+-++=.- .=....|++.|++.+++..+...
T Consensus 312 ~fLkkLSi~~EN-----K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd--~~~R~~mV~~GlIPkLv~LL~d~ 384 (708)
T PF05804_consen 312 TFLKKLSIFKEN-----KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD--PELRSQMVSLGLIPKLVELLKDP 384 (708)
T ss_pred HHHHHHcCCHHH-----HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC--HHHHHHHHHCCCcHHHHHHhCCC
Confidence 344555555554 77788999999999999999998999999988876433 33477999999998888888643
No 17
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=31.95 E-value=1.3e+02 Score=25.50 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=49.4
Q ss_pred hHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhhc
Q psy1734 400 KNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRN 462 (610)
Q Consensus 400 K~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~n 462 (610)
+..+++.++++.++.++...+.-++-.|+..++++..- ..-....++++++..-++.++...
T Consensus 42 ~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 42 IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-PEDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC-cHHHHHHHHHCCChHHHHHHHhcC
Confidence 55667789999999999998888999999999999764 445777778888887777766543
No 18
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=31.84 E-value=2.3e+02 Score=27.31 Aligned_cols=76 Identities=22% Similarity=0.212 Sum_probs=49.5
Q ss_pred HHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhhc
Q psy1734 383 VILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRN 462 (610)
Q Consensus 383 ~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~n 462 (610)
-+.|+|.....-.....-..=+=-.+|..+..|+.+++-.-+.+|++++|.++.. |+|++.-+...
T Consensus 45 vlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~--------------f~~~I~~~~~~ 110 (164)
T PF13925_consen 45 VLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK--------------FGPVIRSNLSA 110 (164)
T ss_pred HHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHh
Confidence 3566666655322222222223345678888999999999999999999999865 78888877665
Q ss_pred CCCcchhccc
Q psy1734 463 KGRYNLLDSA 472 (610)
Q Consensus 463 ~~r~NLlnSA 472 (610)
.+.-+-++-+
T Consensus 111 ~~~~~gVDl~ 120 (164)
T PF13925_consen 111 PSPSIGVDLS 120 (164)
T ss_pred cccccccccc
Confidence 4344444333
No 19
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=30.58 E-value=1e+02 Score=22.19 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=30.6
Q ss_pred hHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHH
Q psy1734 400 KNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKI 434 (610)
Q Consensus 400 K~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~i 434 (610)
|..|++.+.+..++.||++.+.-++-.|+..++++
T Consensus 5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56788999999999999999988998888888876
No 20
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=28.74 E-value=2.7e+02 Score=26.34 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=66.1
Q ss_pred hhHHHHHHHHhccccchhhhhHHHHHHHHhc-cChHHHHHHHHhcCchHHHHHHHhhcCCCcchhccccchHHHHHHHhh
Q psy1734 406 KDLLRKVLVLMKSCHTFLVLSSLRFMRKIIA-MKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAEDIKVLCSHVVE 484 (610)
Q Consensus 406 ~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~-l~Defy~ryiik~nLf~PVl~~f~~n~~r~NLlnSAEnik~Li~hlve 484 (610)
++.++-+.+-++++....+|-||..+-+||- +... |+..+.+.....-+++++. ++|+--.....+|.-+..++.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~-fh~evas~~Fl~el~kl~~---~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGER-FHSEVGKFRFLNELIKLVS---PKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH-HHHHHHhHHHHHHHHHHhc---cccCCCCCCHHHHHHHHHHHH
Confidence 3556666667778888899999999999995 5554 4578888888888888773 333211112788888899999
Q ss_pred hhhccccccc-chhhHHHHH
Q psy1734 485 TYGDELESIH-YVQTFRSLR 503 (610)
Q Consensus 485 ~y~~~l~~i~-yv~tf~~L~ 503 (610)
...+.|.... |..++..|+
T Consensus 113 ~W~~~f~~~p~~~~~Y~~Lk 132 (139)
T cd03567 113 SWTLELPHEPKIKEAYDMLK 132 (139)
T ss_pred HHHHHhcccchHHHHHHHHH
Confidence 9888887653 445555554
No 21
>PRK10167 hypothetical protein; Provisional
Probab=28.37 E-value=2e+02 Score=28.28 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=62.3
Q ss_pred hHHHHHHHHhccccchhhhh----HHHHHHHHhcc------ChHHHHHHHHhcCchHHHHHHHhhcCCCcchhccccchH
Q psy1734 407 DLLRKVLVLMKSCHTFLVLS----SLRFMRKIIAM------KDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAEDIK 476 (610)
Q Consensus 407 ~ll~kVl~Ll~~~~k~L~L~----AlRf~R~iv~l------~Defy~ryiik~nLf~PVl~~f~~n~~r~NLlnSAEnik 476 (610)
+.-.+-++-++++|||+.++ +-|-++.+|+- -|+++.+|. .-++.++..-.+|-+..|
T Consensus 27 ~~t~~~Lv~Fhsr~KyllMaHsq~~yr~LG~lva~~~~~~~~~~~~~~Y~------~~lm~al~~~~t~~~~~N------ 94 (169)
T PRK10167 27 GLTRGALLDYHSRYKLVFLAHSQPEYRKLGPFVADIHQWQSLDDFYNQYR------QRVIVLLSHPANVRDHTN------ 94 (169)
T ss_pred CCCHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHhcCCcCCCHHHHHHHHH------HHHHHHHcCCCCcchhHH------
Confidence 34344456688899998888 88889999973 466777775 346677777667766665
Q ss_pred HHHHHHhhhhhcccccccchhhHHHHHHHHHhhc
Q psy1734 477 VLCSHVVETYGDELESIHYVQTFRSLRLKYNQAQ 510 (610)
Q Consensus 477 ~Li~hlve~y~~~l~~i~yv~tf~~L~~ryeq~~ 510 (610)
.+.|+..-|.+.+..-+. +.|.+++.+|.+++
T Consensus 95 -vL~Hi~GYFKk~Ls~~EK-q~l~~lI~~Yr~g~ 126 (169)
T PRK10167 95 -VLMHVQGYFRPHIDSTER-QQLAALIDSYRRGE 126 (169)
T ss_pred -HHHHHHHHHHhhCCHHHH-HHHHHHHHHHHcCC
Confidence 567777777777766542 35666777776655
No 22
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=24.78 E-value=82 Score=34.27 Aligned_cols=63 Identities=11% Similarity=0.233 Sum_probs=50.1
Q ss_pred HHHHhhhHHHHHHHHhcccc-chhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHH-HhhcCCCc
Q psy1734 401 NFVLNKDLLRKVLVLMKSCH-TFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDT-FNRNKGRY 466 (610)
Q Consensus 401 ~fil~~~ll~kVl~Ll~~~~-k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~-f~~n~~r~ 466 (610)
.|+++++++.++..+-.... .-.+..++||+.++|+.-++= .+...++..||++. +...+...
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p---lL~h~~v~~pl~~L~l~~c~~~~ 67 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP---LLPHRSVHRPLQRLLLRSCGESR 67 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc---cccchhhhhhHHHHHHHHhCCCC
Confidence 48999999999998876644 348889999999999885554 55567999999999 76666544
No 23
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=23.59 E-value=2e+02 Score=30.48 Aligned_cols=48 Identities=15% Similarity=0.446 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHHcCchhhhHHhhccceeeeeeeecccCCC
Q psy1734 136 RKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPA 194 (610)
Q Consensus 136 ~kL~~lF~~cEdle~~~~Lh~L~~I~k~iillNd~~i~E~l~sDe~i~~vvG~LEYDp~ 194 (610)
.+|-.|.+.|.+--.-+....+-.+||.|+. +++-. -.++.|||+||+
T Consensus 194 EnLekLl~ea~erS~~~~~~~~~~lvrklL~---------IisRP--ARLLEcLEFdPe 241 (282)
T PF08926_consen 194 ENLEKLLQEAHERSESEEVAFVTQLVRKLLI---------IISRP--ARLLECLEFDPE 241 (282)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH---------HHSS---------------
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHHHHHH---------Hhcch--hhhhhhhccChH
Confidence 4667777788777667788899999999884 23322 246679999998
No 24
>PF06334 Orthopox_A47: Orthopoxvirus A47 protein; InterPro: IPR009402 This family consists of several Orthopoxvirus A47 proteins. The function of this family is unknown.
Probab=22.65 E-value=24 Score=34.75 Aligned_cols=39 Identities=31% Similarity=0.617 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCc--hhhhHHhhccceeeeeeeecccC
Q psy1734 154 LHCLYDILKSIFLLNK--TQLLDILFSDDIILDVVGCLEYD 192 (610)
Q Consensus 154 Lh~L~~I~k~iillNd--~~i~E~l~sDe~i~~vvG~LEYD 192 (610)
..-+-...|++++||. ..|+|+..+.+....-+.||||=
T Consensus 140 FeFi~~LLKSL~lLNtrQ~KllEy~I~NDlLY~~I~~lEYI 180 (244)
T PF06334_consen 140 FEFINSLLKSLLLLNTRQLKLLEYAINNDLLYEHINALEYI 180 (244)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHhhhhhHHHHHHHHHHHH
Confidence 5567788999999994 67999999999999999999994
Done!