Query psy1734
Match_columns 610
No_of_seqs 239 out of 386
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:45:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rrp_B Nuclear pore complex pr 95.9 0.0075 2.6E-07 55.2 4.8 64 2-65 61-133 (134)
2 3n7c_A ABR034WP; nuclear pore 80.9 1.7 5.7E-05 39.4 4.8 64 3-66 52-121 (130)
3 2ec1_A Nucleoporin 50 kDa; ran 77.1 4.6 0.00016 36.1 6.5 63 3-65 50-124 (125)
4 1xke_A RAN-binding protein 2; 71.8 4.1 0.00014 36.6 4.8 65 3-67 48-121 (130)
5 1egx_A VAsp, vasodilator-stimu 70.7 8.2 0.00028 34.0 6.3 53 10-63 57-109 (115)
6 1k5d_B RAN-specific GTPase-act 70.2 8.1 0.00028 37.5 6.8 64 3-66 88-161 (201)
7 2y8g_A Ranbp3-B, RAN-binding p 69.1 7.1 0.00024 35.5 5.8 57 3-60 59-120 (138)
8 1evh_A WH1 domain, protein (ME 67.4 10 0.00035 33.2 6.2 56 6-62 51-106 (112)
9 2jp2_A Spred-2, sprouty-relate 67.0 8.7 0.0003 34.5 5.8 53 9-62 67-119 (126)
10 2crf_A RAN binding protein 3; 66.8 7.1 0.00024 36.0 5.3 57 3-60 71-132 (150)
11 3tpo_A Importin subunit alpha- 66.2 14 0.00046 40.0 8.3 63 399-461 369-431 (529)
12 3ul1_B Importin subunit alpha- 65.7 13 0.00044 40.1 8.0 63 399-461 350-412 (510)
13 1xod_A Spred1; sprouty, EVH1, 65.1 8.6 0.00029 34.1 5.3 54 9-63 58-111 (118)
14 1qc6_A EVH1 domain from ENA/VA 64.9 11 0.00036 33.9 6.0 60 6-66 52-111 (130)
15 1ddw_A GLGF-domain protein hom 63.2 9.9 0.00034 33.8 5.4 59 7-65 49-108 (120)
16 4hat_B RAN-specific GTPase-act 56.4 15 0.00052 33.5 5.5 64 3-66 63-136 (140)
17 3m1i_B RAN-specific GTPase-act 54.1 18 0.00062 34.8 5.8 64 3-66 114-187 (191)
18 4hxt_A De novo protein OR329; 50.6 61 0.0021 29.9 9.0 79 381-461 19-97 (252)
19 1i2h_A PSD-ZIP45(homer-1C/VESL 50.1 19 0.00064 34.0 5.1 59 7-65 54-113 (168)
20 3tpo_A Importin subunit alpha- 47.8 33 0.0011 37.0 7.4 80 379-460 266-345 (529)
21 4b8j_A Importin subunit alpha- 45.0 48 0.0016 35.2 8.1 79 382-461 347-425 (528)
22 4b8j_A Importin subunit alpha- 44.9 74 0.0025 33.7 9.6 99 381-489 388-497 (528)
23 4hxt_A De novo protein OR329; 44.4 57 0.0019 30.1 7.7 79 380-460 144-222 (252)
24 4db6_A Armadillo repeat protei 42.4 1.1E+02 0.0038 27.6 9.2 80 381-462 29-108 (210)
25 1xqr_A HSPBP1 protein; armadil 41.5 58 0.002 32.8 7.7 75 384-461 60-135 (296)
26 4db8_A Armadillo-repeat protei 35.6 99 0.0034 28.8 7.9 61 400-461 47-107 (252)
27 4db6_A Armadillo repeat protei 34.0 1.4E+02 0.005 26.7 8.6 60 400-460 131-190 (210)
28 2jdq_A Importin alpha-1 subuni 30.9 1.1E+02 0.0037 31.1 7.8 60 402-461 313-372 (450)
29 3syx_A Sprouty-related, EVH1 d 30.7 66 0.0023 29.0 5.2 58 4-62 58-117 (130)
30 1wa5_B Importin alpha subunit; 30.2 1.5E+02 0.0052 31.3 9.2 97 382-488 401-510 (530)
31 2jdq_A Importin alpha-1 subuni 30.1 1.6E+02 0.0054 29.8 8.9 80 381-462 251-330 (450)
32 4db8_A Armadillo-repeat protei 29.6 99 0.0034 28.8 6.8 78 382-461 156-233 (252)
33 3ul1_B Importin subunit alpha- 28.3 46 0.0016 35.7 4.6 79 380-460 248-326 (510)
34 1wa5_B Importin alpha subunit; 28.1 98 0.0033 32.8 7.1 77 384-461 361-439 (530)
35 1xm9_A Plakophilin 1; armadill 27.0 1.2E+02 0.0043 31.8 7.7 68 395-463 32-99 (457)
36 3tt9_A Plakophilin-2; cell adh 25.9 1.5E+02 0.0052 28.8 7.5 66 397-463 42-107 (233)
37 1juq_A ADP-ribosylation factor 24.2 1.9E+02 0.0065 26.8 7.5 95 405-502 48-143 (171)
38 3g2s_A C-terminal fragment of 23.1 2.2E+02 0.0075 25.8 7.5 96 405-503 46-142 (149)
39 2crp_A RGS5, regulator of G-pr 22.6 98 0.0034 27.5 5.0 72 93-165 10-81 (150)
40 3now_A UNC-45 protein, SD10334 21.2 1.6E+02 0.0054 34.2 7.5 80 385-466 686-766 (810)
No 1
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=95.85 E-value=0.0075 Score=55.17 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=55.6
Q ss_pred eEEEEeCCCCCcceeecccCCccchhcc--CeEEEEecC-----C--CCceeeecccccchhHHHHHHHHHhc
Q psy1734 2 SLLVRAEADGTLLLESKIQTDTAYQKQQ--DTLIVWSER-----D--NYDLALSFQEKAGCDEIWEKICQVQG 65 (610)
Q Consensus 2 ~l~V~sE~d~~~LL~s~I~~~~~YqrQq--eTlIvW~e~-----~--~~dlALSFQe~~GC~~iwe~I~~vQ~ 65 (610)
-||+|.+..++++|+++|.++..|+++. +..++|+-. + ...+||.|..++.|+++|+.|.+.|.
T Consensus 61 RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~~~ 133 (134)
T 1rrp_B 61 RLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQS 133 (134)
T ss_dssp EEEEECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred EEEEEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999864 689999732 1 35699999999999999999999875
No 2
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=80.85 E-value=1.7 Score=39.40 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=53.6
Q ss_pred EEEEeCCCCCcceeecccCCccchhcc---CeEEEEec---CCCCceeeecccccchhHHHHHHHHHhcC
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQ---DTLIVWSE---RDNYDLALSFQEKAGCDEIWEKICQVQGK 66 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQq---eTlIvW~e---~~~~dlALSFQe~~GC~~iwe~I~~vQ~~ 66 (610)
||+|.+..+.++|++.|.++-.|++.. .+.+.|.. +.-.-+||.|-.++-+++.-+.|.+.|..
T Consensus 52 llmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~v~~~~~~dgk~~~~~lrfks~e~A~~f~~~iee~~~~ 121 (130)
T 3n7c_A 52 VLCRSEGMGHVLLNTSVVKSFKYQPIDADNENLIKWPIITDGKLETFIIKVKQKADGRRLVGAVADAQQA 121 (130)
T ss_dssp EEEEC-CCCCEEEEEECCTTBCCEESCTTCTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCceEEeeccccCCcEEeEcCCCCccEEEEEecCCCceEEEEEEECCHHHHHHHHHHHHHHHhh
Confidence 788998889999999999999998875 68888873 33345899999999999999999998864
No 3
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.11 E-value=4.6 Score=36.13 Aligned_cols=63 Identities=19% Similarity=0.406 Sum_probs=52.6
Q ss_pred EEEEeCCC-CCcceeecccCCccchhc-cCeEEEEecC----CCC------ceeeecccccchhHHHHHHHHHhc
Q psy1734 3 LLVRAEAD-GTLLLESKIQTDTAYQKQ-QDTLIVWSER----DNY------DLALSFQEKAGCDEIWEKICQVQG 65 (610)
Q Consensus 3 l~V~sE~d-~~~LL~s~I~~~~~YqrQ-qeTlIvW~e~----~~~------dlALSFQe~~GC~~iwe~I~~vQ~ 65 (610)
||+|.+.. +.++|++.|.++..|++. .+.+.+|.=+ ++. -+||-|-.++-++++.+.|.+.|.
T Consensus 50 llmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 50 LLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp EEEEESSSSCCBSCCEECCSSCCEECCTTTEEEEEECCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCEEEEeeEEcCCCeEEecCCCcEEEEEccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 78999976 899999999999999997 4788888522 232 389999999999999999988774
No 4
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=71.81 E-value=4.1 Score=36.63 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=54.1
Q ss_pred EEEEeCCCCCcceeecccCCccchhcc--CeEEEEe-----cCC--CCceeeecccccchhHHHHHHHHHhcCC
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQ--DTLIVWS-----ERD--NYDLALSFQEKAGCDEIWEKICQVQGKD 67 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQq--eTlIvW~-----e~~--~~dlALSFQe~~GC~~iwe~I~~vQ~~~ 67 (610)
||+|.+..+.++|++.|.++..|+... +.-++|+ |.+ -.-+||.|-.++-++++.+.|.+.|...
T Consensus 48 lvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~ 121 (130)
T 1xke_A 48 MLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLL 121 (130)
T ss_dssp EEEEETTTTEEEEEEECCTTSCEEECTTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCeEEEecEeCCCcEEeecCCCCeEEEEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 789999889999999999999998764 5678897 322 2338999999999999999999998743
No 5
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=70.66 E-value=8.2 Score=34.05 Aligned_cols=53 Identities=13% Similarity=0.300 Sum_probs=47.7
Q ss_pred CCCcceeecccCCccchhccCeEEEEecCCCCceeeecccccchhHHHHHHHHH
Q psy1734 10 DGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQV 63 (610)
Q Consensus 10 d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQe~~GC~~iwe~I~~v 63 (610)
++++++++.|.++-.|.+.-.+.-.|.+.+ +=..|.||..+-+....+.+.+.
T Consensus 57 ~~~vv~~~~l~~~l~y~~~~p~FH~w~~~~-~~~GLnF~se~eA~~F~~~v~~a 109 (115)
T 1egx_A 57 DQQVVINCAIVRGVKYNQATPNFHQWRDAR-QVWGLNFGSKEDAAQFAAGMASA 109 (115)
T ss_dssp TCCEEEEEEECSSCCCCCSSTTEEEEESSS-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCEEEEeeEEcCCceEEecCccceEEecCC-EEEEEecCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999996 78999999999988877766543
No 6
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=70.24 E-value=8.1 Score=37.46 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=53.7
Q ss_pred EEEEeCCCCCcceeecccCCccchhcc--CeEEEEe---cCC-C----CceeeecccccchhHHHHHHHHHhcC
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQ--DTLIVWS---ERD-N----YDLALSFQEKAGCDEIWEKICQVQGK 66 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQq--eTlIvW~---e~~-~----~dlALSFQe~~GC~~iwe~I~~vQ~~ 66 (610)
||+|.+.-++++|++.|.++..|+++. +.-++|+ |.. + .-+||.|-.++-++.+...|.+.|..
T Consensus 88 lvMR~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~ 161 (201)
T 1k5d_B 88 LLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKE 161 (201)
T ss_dssp EEEEETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCcceEEEeeEecCCceeeecCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 789999889999999999999999875 5678993 322 2 23899999999999999999998864
No 7
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=69.13 E-value=7.1 Score=35.49 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=45.9
Q ss_pred EEEEeCCCCCcceeecccCCccchhccCeEEEEecC-----CCCceeeecccccchhHHHHHH
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSER-----DNYDLALSFQEKAGCDEIWEKI 60 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~-----~~~dlALSFQe~~GC~~iwe~I 60 (610)
||+|.+....++|++.|.++..|++..+.-++|+-. .-.-++|.|-.++-+ ..+..+
T Consensus 59 lvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~~~~~~lirfk~~e~a-~lf~~~ 120 (138)
T 2y8g_A 59 LVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQGVKVFLISASSKDTG-QLYAAL 120 (138)
T ss_dssp EEEEETTTCCEEEEEECCTTCCEEEEETTEEEEECCC--CCCCCEEEEECCHHHHH-HHHHHH
T ss_pred EEEEEcCcceEEEeeEecCCceeecCCCCEEEEEEecCCCCceEEEEEEECCHHHH-HHHHHH
Confidence 788998888999999999999999988999999832 234689999888776 344433
No 8
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=67.38 E-value=10 Score=33.22 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=48.7
Q ss_pred EeCCCCCcceeecccCCccchhccCeEEEEecCCCCceeeecccccchhHHHHHHHH
Q psy1734 6 RAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQ 62 (610)
Q Consensus 6 ~sE~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQe~~GC~~iwe~I~~ 62 (610)
+.-.++++++++.|.++-.|.+--.+.-.|.+.+ +=..|.||..+-+....+.+.+
T Consensus 51 ~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~-~~~GLnF~se~eA~~F~~~v~~ 106 (112)
T 1evh_A 51 RKIQDHQVVINCAIPKGLKYNQATQTFHQWRDAR-QVYGLNFGSKEDANVFASAMMH 106 (112)
T ss_dssp EETTTCCEEEEEEECTTCCCBCCSSSEEEEECSS-CEEEEEESSHHHHHHHHHHHHH
T ss_pred EECCCCcEEEeeEecCCceEEecCccceeEecCC-EEEEEecCCHHHHHHHHHHHHH
Confidence 3336789999999999999999999999999996 7899999999988887766544
No 9
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=67.03 E-value=8.7 Score=34.48 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=47.1
Q ss_pred CCCCcceeecccCCccchhccCeEEEEecCCCCceeeecccccchhHHHHHHHH
Q psy1734 9 ADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQ 62 (610)
Q Consensus 9 ~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQe~~GC~~iwe~I~~ 62 (610)
.|+.+++++-|.++-.|.+--.+.-.|.+.+ +=.+|.|+..+-+....+.+.+
T Consensus 67 ~d~~vv~~~~l~~~l~Y~~~~p~FH~w~~~~-~~~GLnF~se~eA~~F~~~v~~ 119 (126)
T 2jp2_A 67 KDKLVVLECYVRKDLVYTKANPTFHHWKVDN-RKFGLTFQSPADARAFDRGVRK 119 (126)
T ss_dssp SSSCEEEEEEESSCCCEEEEETTEEEEECSS-SEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEeCCceEEecCCcceEEEcCC-EEEEEecCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999997 4499999999999887766654
No 10
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=66.80 E-value=7.1 Score=36.04 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=46.6
Q ss_pred EEEEeCCCCCcceeecccCCccchhccCeEEEEe--cCC---CCceeeecccccchhHHHHHH
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWS--ERD---NYDLALSFQEKAGCDEIWEKI 60 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQqeTlIvW~--e~~---~~dlALSFQe~~GC~~iwe~I 60 (610)
||+|.+....++|++.|.++-.|++..+.-++|+ |++ -.-++|.|-.++-+. .+..|
T Consensus 71 lvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~~~~~~lirfk~~e~a~-lf~~~ 132 (150)
T 2crf_A 71 LVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQGVKVFLISASSKDTGQ-LYAAL 132 (150)
T ss_dssp EEEEESSSCCEEEEEECCTTCCEECCSSSEEEEEEEBSSSCCEEEEEEECCHHHHHH-HHHHH
T ss_pred EEEEEcCcceEEeeeeccCCceeecCCCCEEEEEeecCCCCceEEEEEEECCHHHHH-HHHHH
Confidence 7889988889999999999999999999999998 542 234799999888874 44443
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=66.22 E-value=14 Score=40.03 Aligned_cols=63 Identities=8% Similarity=0.079 Sum_probs=55.0
Q ss_pred hhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhh
Q psy1734 399 IKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 461 (610)
Q Consensus 399 iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~ 461 (610)
.+..++..+++..++.++.+.+.-++-.|...+.++..-.+.-..+||++.+...|+++++..
T Consensus 369 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 369 QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 355678899999999999998888999999999999887788888999999999999998754
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=65.74 E-value=13 Score=40.12 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=55.7
Q ss_pred hhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhh
Q psy1734 399 IKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 461 (610)
Q Consensus 399 iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~ 461 (610)
.+..+.+.+++..++.++.+.+.-++-.|...++++..-.+.-+.+||++.+.+.|+++++..
T Consensus 350 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 350 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 356778899999999999999888999999999999888788889999999999999998754
No 13
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=65.05 E-value=8.6 Score=34.07 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=47.7
Q ss_pred CCCCcceeecccCCccchhccCeEEEEecCCCCceeeecccccchhHHHHHHHHH
Q psy1734 9 ADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQV 63 (610)
Q Consensus 9 ~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQe~~GC~~iwe~I~~v 63 (610)
.++.+++++.|.++-.|.+--.+.-.|.+.+ +=..|.|+..+-+....+.+.+.
T Consensus 58 ~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~-~~~GL~F~se~eA~~F~~~v~~a 111 (118)
T 1xod_A 58 RDKTVVLECVLRRDLVYNKVTPTFHHWRIGD-KKFGLTFQSPADARAFDRGIRRA 111 (118)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTEEEEEETT-EEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEeCCcEEEecCCcceEEEeCC-EEEEEecCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999974 55999999999998887766553
No 14
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=64.85 E-value=11 Score=33.90 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=50.6
Q ss_pred EeCCCCCcceeecccCCccchhccCeEEEEecCCCCceeeecccccchhHHHHHHHHHhcC
Q psy1734 6 RAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGK 66 (610)
Q Consensus 6 ~sE~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQe~~GC~~iwe~I~~vQ~~ 66 (610)
+...+..+++++.|.++-.|.+--.+..+|.+.+ +=++|+|++.+-....-+.+.+....
T Consensus 52 ~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~w~~~~-~~~GL~F~se~eA~~F~~~~~~al~~ 111 (130)
T 1qc6_A 52 VKLQDQQVVINYSIVKGLKYNQATPTFHQWRDAR-QVYGLNFASKEEATTFSNAMLFALNI 111 (130)
T ss_dssp ECTTTCCEEEEEECCTTCEEEEEETTEEEEECSS-CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCeEEEeeEEeCCcEEeccCCeeEEEEcCC-EEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 3346789999999999999999999999998885 78999999999888877776665543
No 15
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=63.22 E-value=9.9 Score=33.81 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=51.4
Q ss_pred eCCCCCcceeecccCCccchhccCeEEEEecCC-CCceeeecccccchhHHHHHHHHHhc
Q psy1734 7 AEADGTLLLESKIQTDTAYQKQQDTLIVWSERD-NYDLALSFQEKAGCDEIWEKICQVQG 65 (610)
Q Consensus 7 sE~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~-~~dlALSFQe~~GC~~iwe~I~~vQ~ 65 (610)
+-.++.+++++.|.++-.|.+.-.|.-.|.+.. ++-++|.||.++-+...=+.|.++..
T Consensus 49 ~~~~~~vv~n~~i~~~l~y~~a~p~FhqW~d~~~~~~~GLnF~s~~eA~~F~~~~~~~~~ 108 (120)
T 1ddw_A 49 SLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKE 108 (120)
T ss_dssp EEETTEEEEEEECCTTCCCEECSSSEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EccCCEEEEeCEecCCcEEeeCCccccEEEcCCCcEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 344789999999999999999999999999987 89999999999988887777666554
No 16
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=56.40 E-value=15 Score=33.48 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=52.7
Q ss_pred EEEEeCCCCCcceeecccCCccchhccC--eEEEEe---c-CCC----CceeeecccccchhHHHHHHHHHhcC
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQD--TLIVWS---E-RDN----YDLALSFQEKAGCDEIWEKICQVQGK 66 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQqe--TlIvW~---e-~~~----~dlALSFQe~~GC~~iwe~I~~vQ~~ 66 (610)
||+|.+.-+.++|++.|.++-.|++... .-+||+ | ++| .-+||-|-.++-+++.-+.|.+.|..
T Consensus 63 llmR~d~~~kv~lN~~i~~~m~~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~ 136 (140)
T 4hat_B 63 ILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEI 136 (140)
T ss_dssp EEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcceEEEEeEecCCeEEeEcCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 7889988899999999999999999753 467885 2 233 34899999999999999999888753
No 17
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=54.12 E-value=18 Score=34.78 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=53.0
Q ss_pred EEEEeCCCCCcceeecccCCccchhcc--CeEEEEec----CCC----CceeeecccccchhHHHHHHHHHhcC
Q psy1734 3 LLVRAEADGTLLLESKIQTDTAYQKQQ--DTLIVWSE----RDN----YDLALSFQEKAGCDEIWEKICQVQGK 66 (610)
Q Consensus 3 l~V~sE~d~~~LL~s~I~~~~~YqrQq--eTlIvW~e----~~~----~dlALSFQe~~GC~~iwe~I~~vQ~~ 66 (610)
||+|.+.-+.++|++.|.++..|++.. +.-+||+= ++| .-+||.|-.++-++...+.|.+.|..
T Consensus 114 llMR~d~~~kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~ 187 (191)
T 3m1i_B 114 ILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEI 187 (191)
T ss_dssp EEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcceEEEeeecCCCcEEeECCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 788998889999999999999999985 45788862 233 34899999999999999998888753
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=50.63 E-value=61 Score=29.88 Aligned_cols=79 Identities=9% Similarity=0.021 Sum_probs=60.8
Q ss_pred HHHHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHh
Q psy1734 381 LGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFN 460 (610)
Q Consensus 381 l~~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~ 460 (610)
....+..|.-....+. ..+..+.+.+.+..++.++++...-++..|++.+.++..- ++-....+++.+.+.+++.++.
T Consensus 19 ~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~ll~ 96 (252)
T 4hxt_A 19 QKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLT 96 (252)
T ss_dssp HHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHc
Confidence 3444555554444443 4466778889999999999999888999999999998764 4566778899999999999887
Q ss_pred h
Q psy1734 461 R 461 (610)
Q Consensus 461 ~ 461 (610)
.
T Consensus 97 ~ 97 (252)
T 4hxt_A 97 S 97 (252)
T ss_dssp C
T ss_pred C
Confidence 4
No 19
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=50.09 E-value=19 Score=34.00 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=51.5
Q ss_pred eCCCCCcceeecccCCccchhccCeEEEEecCC-CCceeeecccccchhHHHHHHHHHhc
Q psy1734 7 AEADGTLLLESKIQTDTAYQKQQDTLIVWSERD-NYDLALSFQEKAGCDEIWEKICQVQG 65 (610)
Q Consensus 7 sE~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~-~~dlALSFQe~~GC~~iwe~I~~vQ~ 65 (610)
+-.+..+++++-|.++-.|.+.-.+.-.|.+.. ++-++|.||..+-+...-+.|.++..
T Consensus 54 g~~d~kvvinc~I~~~l~Y~kasp~FHqW~d~~~~~v~GLnF~Se~eA~~F~~~~~~ale 113 (168)
T 1i2h_A 54 SLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKE 113 (168)
T ss_dssp EEETTEEEEEEECCTTCCEEEEETTEEEEEETTTTEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EccCCEEEEecEecCCcEEeeCCcccceeecCCCcEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 344789999999999999999999999999987 89999999999988887777766654
No 20
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=47.77 E-value=33 Score=36.98 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=63.1
Q ss_pred HHHHHHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHH
Q psy1734 379 QLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDT 458 (610)
Q Consensus 379 ~ll~~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~ 458 (610)
.+....|-.|+++..++..+ +..+...+++.+++.|+.+.+..++..|+|.+++++...| -....++..+.+.+++.+
T Consensus 266 ~v~~~a~~aL~~l~~~~~~~-~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~i~~~g~l~~L~~L 343 (529)
T 3tpo_A 266 EVLADSCWAISYLTDGPNER-IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSL 343 (529)
T ss_dssp HHHHHHHHHHHHHHSSCHHH-HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhh-HHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch-HHHHHHhhcccHHHHHHH
Confidence 34556677777776665554 4467788999999999999998899999999999987644 567788899999888887
Q ss_pred Hh
Q psy1734 459 FN 460 (610)
Q Consensus 459 f~ 460 (610)
+.
T Consensus 344 L~ 345 (529)
T 3tpo_A 344 LT 345 (529)
T ss_dssp TT
T ss_pred Hc
Confidence 65
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=44.97 E-value=48 Score=35.20 Aligned_cols=79 Identities=9% Similarity=0.057 Sum_probs=58.8
Q ss_pred HHHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhh
Q psy1734 382 GVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 461 (610)
Q Consensus 382 ~~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~ 461 (610)
...+-.|+-+..... .....++..+++..++.++.+.+.-++..|+..+.++..-.+.-..+|+++.+++.|++.++..
T Consensus 347 ~~A~~~L~nl~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 425 (528)
T 4b8j_A 347 KEACWTISNITAGNK-DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC 425 (528)
T ss_dssp HHHHHHHHHHHTSCH-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 334444444333222 2344667778999999999888888999999999999877566678899999999999998765
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=44.88 E-value=74 Score=33.68 Aligned_cols=99 Identities=10% Similarity=0.099 Sum_probs=66.3
Q ss_pred HHHHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHH----------HHHHHHhcC
Q psy1734 381 LGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDF----------YNRYIIKGH 450 (610)
Q Consensus 381 l~~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Def----------y~ryiik~n 450 (610)
....+..|+-+..+-....+.++...+++..++.|+...+.-++..|+..+.+++...+.. |...|...+
T Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 467 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAE 467 (528)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCC
Confidence 3444445554444422334557778899999999999988889999999999998765442 566666666
Q ss_pred chHHHHHHHhhcCCCcchhccc-cchHHHHHHHhhhhhcc
Q psy1734 451 LFQPVIDTFNRNKGRYNLLDSA-EDIKVLCSHVVETYGDE 489 (610)
Q Consensus 451 Lf~PVl~~f~~n~~r~NLlnSA-Enik~Li~hlve~y~~~ 489 (610)
.++++..+ .++. +.++.....++++|++.
T Consensus 468 ~~~~l~~L----------~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 468 GLEKIENL----------QSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHG----------GGCSSHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHH----------HcCCCHHHHHHHHHHHHHHCCC
Confidence 66555442 2333 45777777777777643
No 23
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=44.44 E-value=57 Score=30.13 Aligned_cols=79 Identities=8% Similarity=0.005 Sum_probs=59.6
Q ss_pred HHHHHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHH
Q psy1734 380 LLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTF 459 (610)
Q Consensus 380 ll~~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f 459 (610)
+....+..|+....+... .+..+...+.+..++.++.+.+.-++..|++.+.++.. .+.-..+.+++.+.+.++++++
T Consensus 144 ~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 144 VQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCHH-HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHH
Confidence 344555555554444333 34567789999999999999888899999999999886 4555677889999998888876
Q ss_pred h
Q psy1734 460 N 460 (610)
Q Consensus 460 ~ 460 (610)
.
T Consensus 222 ~ 222 (252)
T 4hxt_A 222 T 222 (252)
T ss_dssp G
T ss_pred C
Confidence 5
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=42.38 E-value=1.1e+02 Score=27.58 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=59.6
Q ss_pred HHHHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHh
Q psy1734 381 LGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFN 460 (610)
Q Consensus 381 l~~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~ 460 (610)
....+..|.....+ ....+..++..+.+..++.+|++.+.-++..|++.+.++..-+ +-....+++.+...+++.++.
T Consensus 29 ~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~ 106 (210)
T 4db6_A 29 LQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 106 (210)
T ss_dssp HHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHc
Confidence 34445555544433 2334667888999999999999988889999999999987554 445677889999999999875
Q ss_pred hc
Q psy1734 461 RN 462 (610)
Q Consensus 461 ~n 462 (610)
..
T Consensus 107 ~~ 108 (210)
T 4db6_A 107 SP 108 (210)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 25
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=41.53 E-value=58 Score=32.80 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=58.1
Q ss_pred HHHhhHHHHHhcchhhhHHHHhhhHHHHHHH-HhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhh
Q psy1734 384 ILELLSFCVEHHSYHIKNFVLNKDLLRKVLV-LMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 461 (610)
Q Consensus 384 ileLL~FCv~hH~y~iK~fil~~~ll~kVl~-Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~ 461 (610)
.++.|..+++... .++-+..-+.+..++. ||.+.+.-++-.|++.+.++.+-+ +.+.+.+++.+.+.|++.++..
T Consensus 60 Al~~L~~lv~~~d--na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 60 ALELLADLCENMD--NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHTSHH--HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh--hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHcc
Confidence 4455555555432 3444566777888888 999999999999999999998854 4577789999999999999875
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=35.61 E-value=99 Score=28.77 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=51.4
Q ss_pred hHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhh
Q psy1734 400 KNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 461 (610)
Q Consensus 400 K~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~ 461 (610)
+..++..+.+..++.++++...-++..|++.+.++..-.++ ....+++.+.+.+++.++..
T Consensus 47 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~lL~~ 107 (252)
T 4db8_A 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSS 107 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHcC
Confidence 45678889999999999998888999999999998765444 55788999999999988765
No 27
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=34.05 E-value=1.4e+02 Score=26.74 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=49.9
Q ss_pred hHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHh
Q psy1734 400 KNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFN 460 (610)
Q Consensus 400 K~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~ 460 (610)
+..++..+.+..++.++++.+.-++..|+..+.++..-.++ ....+++.+.+.+++.++.
T Consensus 131 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-HHHHHHHCCCHHHHHHHHh
Confidence 44677899999999999998888999999999999875444 4578889999988888665
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=30.87 E-value=1.1e+02 Score=31.13 Aligned_cols=60 Identities=7% Similarity=0.141 Sum_probs=49.7
Q ss_pred HHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhh
Q psy1734 402 FVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 461 (610)
Q Consensus 402 fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~ 461 (610)
-+++.+++..++.++...+.-++..|...+.++..-.+.-..+++++.+++.++++++..
T Consensus 313 ~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~ 372 (450)
T 2jdq_A 313 TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV 372 (450)
T ss_dssp HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 466778999999999888888999999999999865455567788899999999998764
No 29
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=30.71 E-value=66 Score=29.00 Aligned_cols=58 Identities=28% Similarity=0.437 Sum_probs=47.4
Q ss_pred EEEeC--CCCCcceeecccCCccchhccCeEEEEecCCCCceeeecccccchhHHHHHHHH
Q psy1734 4 LVRAE--ADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQ 62 (610)
Q Consensus 4 ~V~sE--~d~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQe~~GC~~iwe~I~~ 62 (610)
.+.++ .|..++|++.|.++-.|.|=-.|.=-|.|+. .=.-|.||.++.....=+.+.+
T Consensus 58 RIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqWrd~~-~~yGL~F~S~~dA~~F~~~~~~ 117 (130)
T 3syx_A 58 FIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHWKIDD-KKFGLTFQSPADARAFDRGIRR 117 (130)
T ss_dssp EEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEETT-EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCCCeEEEeeeecCCceEEecccccccccccC-eEeecccCCHHHHHHHHHHHHH
Confidence 44555 5678999999999999999999999999987 4489999999887765544433
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=30.24 E-value=1.5e+02 Score=31.30 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=59.6
Q ss_pred HHHHHhhHHHHHhcch--hhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHH----------HHHHHHhc
Q psy1734 382 GVILELLSFCVEHHSY--HIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDF----------YNRYIIKG 449 (610)
Q Consensus 382 ~~ileLL~FCv~hH~y--~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Def----------y~ryiik~ 449 (610)
...+..|+.+...... ....+++..+++..++.++.....-++..|+..+.+++...+.. |...+.+.
T Consensus 401 ~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (530)
T 1wa5_B 401 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKA 480 (530)
T ss_dssp HHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHc
Confidence 3444444444433222 23446668889999999999888888889999999988654433 44445555
Q ss_pred CchHHHHHHHhhcCCCcchhccc-cchHHHHHHHhhhhhc
Q psy1734 450 HLFQPVIDTFNRNKGRYNLLDSA-EDIKVLCSHVVETYGD 488 (610)
Q Consensus 450 nLf~PVl~~f~~n~~r~NLlnSA-Enik~Li~hlve~y~~ 488 (610)
+.+..+.. |+++. +.++.....+.++|..
T Consensus 481 g~~~~L~~----------L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 481 GGMEKIFN----------CQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp THHHHHHG----------GGGCSCHHHHHHHHHHHHHHSS
T ss_pred CcHHHHHH----------HHcCCCHHHHHHHHHHHHHHCC
Confidence 55444433 23333 4566666666666654
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=30.06 E-value=1.6e+02 Score=29.82 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=58.5
Q ss_pred HHHHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHh
Q psy1734 381 LGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFN 460 (610)
Q Consensus 381 l~~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~ 460 (610)
....+..|.....+... .+..++..+++..++.++.+.+..++-.|++.+.++..-.++ ..+.+++.+++.+++.++.
T Consensus 251 ~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~l~ 328 (450)
T 2jdq_A 251 VSPALRAVGNIVTGDDI-QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRA-QIQTVIDANIFPALISILQ 328 (450)
T ss_dssp HHHHHHHHHHHTTSCHH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCChH-HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHh
Confidence 34455555554444333 344677889999999999988888999999999998865444 3456788899999999887
Q ss_pred hc
Q psy1734 461 RN 462 (610)
Q Consensus 461 ~n 462 (610)
..
T Consensus 329 ~~ 330 (450)
T 2jdq_A 329 TA 330 (450)
T ss_dssp HS
T ss_pred cC
Confidence 53
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=29.63 E-value=99 Score=28.76 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=56.1
Q ss_pred HHHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhh
Q psy1734 382 GVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNR 461 (610)
Q Consensus 382 ~~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~ 461 (610)
...+..|.-...+. -..+..+...+++..++.++++.+.-++..|++.+.++..- ++-....+++.+.+.+++.++..
T Consensus 156 ~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 156 QEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp HHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHHHhCC
Confidence 33444444433322 22345677889999999999998888999999999999854 44556678899999888887754
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=28.33 E-value=46 Score=35.70 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=59.6
Q ss_pred HHHHHHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHH
Q psy1734 380 LLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTF 459 (610)
Q Consensus 380 ll~~ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f 459 (610)
+....|-.|+....+...+ +..+...+++.+++.|+.+.+.-++..|+|.+.++....| -....++..+.+.+++.++
T Consensus 248 v~~~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 248 VLADSCWAISYLTDGPNER-IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp HHHHHHHHHHHHTSSCHHH-HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGCC-CT
T ss_pred HHHHHHHHHHHHhhchhhh-HHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH-HHHHHHhhccchHHHHHHh
Confidence 4555666666666555444 3467788999999999999988899999999999887654 5567888999887776655
Q ss_pred h
Q psy1734 460 N 460 (610)
Q Consensus 460 ~ 460 (610)
.
T Consensus 326 ~ 326 (510)
T 3ul1_B 326 T 326 (510)
T ss_dssp T
T ss_pred c
Confidence 3
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=28.10 E-value=98 Score=32.85 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=55.7
Q ss_pred HHHhhHHHHHhcchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChH--HHHHHHHhcCchHHHHHHHhh
Q psy1734 384 ILELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDD--FYNRYIIKGHLFQPVIDTFNR 461 (610)
Q Consensus 384 ileLL~FCv~hH~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~De--fy~ryiik~nLf~PVl~~f~~ 461 (610)
.+-.|+-...+....++ .++..+++..++.++...+.-++-.|+..+.++..-.+. -+.+++++.+++.|++.++..
T Consensus 361 A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~ 439 (530)
T 1wa5_B 361 ACWTISNITAGNTEQIQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI 439 (530)
T ss_dssp HHHHHHHHTTSCHHHHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC
Confidence 33334333333333333 456788999999999888878899999999999865443 567889999999999998764
No 35
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=26.98 E-value=1.2e+02 Score=31.80 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=57.1
Q ss_pred cchhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhhcC
Q psy1734 395 HSYHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNK 463 (610)
Q Consensus 395 H~y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~n~ 463 (610)
|.-.+|.-|...+.+..++.+|++.+.-++..|.+.+|++..-++ -.-..|++.+...|++.++.+++
T Consensus 32 ~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~-~~k~~i~~~G~i~~Lv~lL~~~~ 99 (457)
T 1xm9_A 32 QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST-TNKLETRRQNGIREAVSLLRRTG 99 (457)
T ss_dssp SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTCHHHHHHHHTTCC
T ss_pred CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHhhCC
Confidence 445567778899999999999999888899999999999988544 46677889999999999997554
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=25.88 E-value=1.5e+02 Score=28.76 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=55.1
Q ss_pred hhhhHHHHhhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhhcC
Q psy1734 397 YHIKNFVLNKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNK 463 (610)
Q Consensus 397 y~iK~fil~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~n~ 463 (610)
...|.-|...+.+..++.||++...-++-.|+.-+|++-.-++ -.-..|++.+-..|++.++...+
T Consensus 42 ~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~-~nk~~I~~~GaI~~Lv~lL~~~~ 107 (233)
T 3tt9_A 42 SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN-DNKLEVAELNGVPRLLQVLKQTR 107 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHHCC
T ss_pred cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHcCCHHHHHHHHccCC
Confidence 3457778888999999999999988899999999999976444 46678999999999999997644
No 37
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=24.15 E-value=1.9e+02 Score=26.77 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhhcCCCcchhccccchHHHHHHHhh
Q psy1734 405 NKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAEDIKVLCSHVVE 484 (610)
Q Consensus 405 ~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~n~~r~NLlnSAEnik~Li~hlve 484 (610)
-++.++-+.+-+++++...++-||..+-+||.==-.-|++.+.+...+.-+++++. ++|+==++...+|.-+.-+++
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~---~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVS---PKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHC---CCCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhc---cccCCCCCCHHHHHHHHHHHH
Confidence 34555666666778888899999999999996555677788888888888777764 333211223677888888888
Q ss_pred hhhcccccccc-hhhHHHH
Q psy1734 485 TYGDELESIHY-VQTFRSL 502 (610)
Q Consensus 485 ~y~~~l~~i~y-v~tf~~L 502 (610)
.....|....+ ..+++.|
T Consensus 125 ~W~~~f~~~~~i~~~y~~L 143 (171)
T 1juq_A 125 SWTMALPEEAKIKDAYHML 143 (171)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHH
Confidence 88888876432 2344444
No 38
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=23.10 E-value=2.2e+02 Score=25.82 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhhcCCCcchhccccchHHHHHHHhh
Q psy1734 405 NKDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAEDIKVLCSHVVE 484 (610)
Q Consensus 405 ~~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~n~~r~NLlnSAEnik~Li~hlve 484 (610)
-++.++-+.+-++++.-..+|.||..+-+||-==-.-|++.|.+.....-+++++.. +|+=-.+-..+|.-+.-++.
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~---k~~~~~~~~~Vk~kil~li~ 122 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSP---KYLGSRTSEKVKNKILELLY 122 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCT---TTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcc---cccCCCCCHHHHHHHHHHHH
Confidence 344555566666777888999999999999854455566778887777666666643 33211122678888888888
Q ss_pred hhhccccccc-chhhHHHHH
Q psy1734 485 TYGDELESIH-YVQTFRSLR 503 (610)
Q Consensus 485 ~y~~~l~~i~-yv~tf~~L~ 503 (610)
.....|++.. |.++++.|+
T Consensus 123 ~W~~~f~~~p~i~~~Y~~Lk 142 (149)
T 3g2s_A 123 SWTVGLPEEVKIAEAYQMLK 142 (149)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHH
Confidence 8888887653 445555554
No 39
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.64 E-value=98 Score=27.53 Aligned_cols=72 Identities=13% Similarity=0.263 Sum_probs=47.0
Q ss_pred CCcCCCccCcCCHHHHHHHHHhhcCChhHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q psy1734 93 PPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIF 165 (610)
Q Consensus 93 ~~~~LP~~el~nL~eI~~~i~~~~~s~~~re~l~~~i~~~~Yi~kL~~lF~~cEdle~~~~Lh~L~~I~k~ii 165 (610)
-++.+|.|...........+...+..|.++..+..|+.++ |-...+..+..||+.+...+-..+....+.|+
T Consensus 10 ~~~~~~~~s~~~~~~w~~sl~~iL~~~~g~~~F~~Fl~~e-~s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy 81 (150)
T 2crp_A 10 KPAKTQKTSLDEALQWRDSLDKLLQNNYGLASFKSFLKSE-FSEENLEFWIACEDYKKIKSPAKMAEKAKQIY 81 (150)
T ss_dssp CCCCCCCCCHHHHTHHHHCHHHHHHSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred cCccCCCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4556666654333333334555556788999999888754 57779999999999888775444444444443
No 40
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=21.23 E-value=1.6e+02 Score=34.19 Aligned_cols=80 Identities=6% Similarity=0.017 Sum_probs=58.9
Q ss_pred HHhhHHHHHhcchhhhHHHHh-hhHHHHHHHHhccccchhhhhHHHHHHHHhccChHHHHHHHHhcCchHHHHHHHhhcC
Q psy1734 385 LELLSFCVEHHSYHIKNFVLN-KDLLRKVLVLMKSCHTFLVLSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVIDTFNRNK 463 (610)
Q Consensus 385 leLL~FCv~hH~y~iK~fil~-~~ll~kVl~Ll~~~~k~L~L~AlRf~R~iv~l~Defy~ryiik~nLf~PVl~~f~~n~ 463 (610)
+-.|+....++.-.++ .+++ .+.+..+..|+.+..--++-.|+..+.+++.-.+ -+.++|++.+.+.|+.+++....
T Consensus 686 a~ALanLt~~s~~~~~-~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~-e~~~~l~e~G~i~~L~~LL~~~d 763 (810)
T 3now_A 686 AGALAIITSVSVKCCE-KILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE-EIAKKLFETDIMELLSGLGQLPD 763 (810)
T ss_dssp HHHHHHHHHHCHHHHH-HHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHTSTHHHHHTTSCCCTT
T ss_pred HHHHHHHhCCCHHHHH-HHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHhCcc
Confidence 3334433333333344 5566 8899999999999888899999999999987544 46899999999999999887653
Q ss_pred CCc
Q psy1734 464 GRY 466 (610)
Q Consensus 464 ~r~ 466 (610)
+|+
T Consensus 764 ~~~ 766 (810)
T 3now_A 764 DTR 766 (810)
T ss_dssp STT
T ss_pred cCc
Confidence 333
Done!