RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1734
(610 letters)
>gnl|CDD|147119 pfam04802, SMK-1, Component of IIS longevity pathway SMK-1. SMK-1
is a component of the IIs longevity pathway which
regulates aging in C.elegans. Specifically, SMK-1
influences DAF-16-dependant regulation of the aging
process by regulating the transcriptional specificity of
DAF-16 activity. SMK-1 plays a role in longevity by
modulating the transcriptional specificity of DAF-16.
Length = 193
Score = 119 bits (300), Expect = 6e-31
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 129 IESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGC 188
+E+E YI KL+ +FHMCEDLENL LH L +I+K++ LLN +Q+L+I+ SD+ I+ VVGC
Sbjct: 1 LENEDYIPKLIPLFHMCEDLENLDDLHLLCNIVKTLILLNDSQILEIILSDENIMGVVGC 60
Query: 189 LEYDPALTSPK-RHRHYLRTNSKVK 212
LEYDP PK HR +L N+K K
Sbjct: 61 LEYDPEFPQPKANHRQFLTQNAKFK 85
>gnl|CDD|241324 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding domain. NUP50
acts as a cofactor for the importin-alpha:importin-beta
heterodimer, which allows for transportation of many
nuclear-targeted proteins through nuclear pore
complexes. It is thought to function primarily at the
terminal stages of nuclear protein import to coordinate
import complex disassembly and importin recycling. NUP50
is composed of a N-terminal NUP50 domain which binds the
C-terminus of importin-beta, a central domain which
binds importin-beta, and a C-terminal RanBD which binds
importin-beta through Ran-GTP. NUP50:importin-alpha then
binds cargo and can stimulate nuclear import. The
N-terminal domain of NUP50 is also able to displace
nuclear localization signals from importin-alpha. NUP50
interacts with cyclin-dependent kinase inhibitor 1B
which binds to cyclin E-CDK2 or cyclin D-CDK4 complexes
and prevents its activation, thereby controling the cell
cycle progression at G1. Ran is a Ras-like nuclear small
GTPase, which regulates receptor-mediated transport
between the nucleus and the cytoplasm. RanGTP hydrolysis
is stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. RabBD shares structural similarity to the
PH domain, but lacks detectable sequence similarity.
Length = 109
Score = 33.8 bits (78), Expect = 0.056
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 209 SKVKLYALNADRQWDDKGTGHVSSIYVEKHKGMS---LLVRAE-ADGTLLL 255
+ KL+ D +W DKG G +Y++K K S LLVRA+ + G +LL
Sbjct: 7 VRCKLFVKKDDGEWKDKGVGT---LYLKKVKDTSKARLLVRADTSLGKILL 54
>gnl|CDD|241234 cd00837, EVH1_family, EVH1 (Drosophila Enabled
(Ena)/Vasodilator-stimulated phosphoprotein (VASP)
homology 1) domain. The EVH1 domains are part of the PH
domain superfamily. EVH1 subfamilies include
Enables/VASP, Homer/Vesl, WASP, and Spred. Ligands are
known for three of the EVH1 subfamilies, all of which
bind proline-rich sequences: the Enabled/VASP family
binds to FPPPP peptides, the Homer/Vesl family binds
PPxxF peptides, and the WASP family binds LPPPEP
peptides. EVH1 has a PH-like fold, despite having
minimal sequence similarity to PH or PTB domains.
Length = 102
Score = 32.8 bits (75), Expect = 0.12
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 222 WDDKGTGHVSSIYVEKHKGMSLLVRAE--ADGTLLLESKIQTDTAYQKQQDTLIVWSERD 279
W G G YV+ S + E D +++ I+ + Y K T W++ D
Sbjct: 19 WVPAGGGASRVSYVKDTGRNSFRIHGEDIKDKKVVINCTIRKNLVYNKATQTFHQWAD-D 77
Query: 280 NYDLALSFQEKA 291
L+F +
Sbjct: 78 RTVFGLNFASEE 89
>gnl|CDD|241328 cd13174, RanBD4_RanBP2_insect-like, Ran-binding protein 2, Ran
binding domain repeat 4. RanBP2 (also called E3
SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and
nuclear pore complex (NPC) protein Nup358) is a giant
nucleoporin that localizes to the cytosolic face of the
NPC. RanBP2 contains a leucine-rich region, 8
zinc-finger motifs, a cyclophilin A homologous domain,
and 4 RanBDs. Ran is a Ras-like nuclear small GTPase,
which regulates receptor-mediated transport between the
nucleus and the cytoplasm. RanGTP hydrolysis is
stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. All eukaryotic cells contain RanBP1, but in
vertebrates however, the main RanBP seems to be RanBP2.
There is no RanBP2 ortholog in yeast. Transport complex
disassembly is accomplished by a small ubiquitin-related
modifier-1 (SUMO-1)-modified version of RanGAP that is
bound to RanBP2. RanBP1 acts as a second line of defense
against exported RanGTP-importin complexes which have
escaped from dissociation by RanBP2. RanBP2 also
interacts with the importin subunit beta-1. RabBD shares
structural similarity to the PH domain, but lacks
detectable sequence similarity. The members here include
insects and nematodes. The fourth RanBD is present in
this hierarchy.
Length = 113
Score = 30.1 bits (68), Expect = 0.97
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 212 KLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQ--KQ 268
KLY +AD ++W ++G G + +Y + LL+R E ++L I +D +
Sbjct: 10 KLYRFDADTKEWKERGVGEMKILYHPELNTYRLLMRREQVHKVVLNMLITSDLQLRPMNT 69
Query: 269 QDTLIVWSERDNYDLALSFQEKAGC 293
D W + + E
Sbjct: 70 SDKSFTWGGMNYAEADEPEVETLAV 94
>gnl|CDD|213950 TIGR04337, AmmeMemoSam_rS, AmmeMemoRadiSam system radical SAM
enzyme. Members of this protein family are
uncharacterized radical SAM enzymes that occur in a
prokaryotic three-gene system along with homologs of
mammalian proteins Memo (Mediator of ErbB2-driven cell
MOtility) and AMMERCR1 (Alport syndrome, Mental
Retardation, Midface hypoplasia, and Elliptocytosis).
Among radical SAM enzymes that have been experimentally
characterized, the most closely related in sequence
include activases of pyruvate formate-lyase and of
benzylsuccinate synthase.
Length = 349
Score = 31.1 bits (71), Expect = 1.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 24/71 (33%)
Query: 436 AMKDDFYNRYIIKGHLFQPVIDTFNRNKGRY------------NLL-----DSAEDIKVL 478
A +DFY++ + GHL QPV+DT RY LL DS +++ +
Sbjct: 178 AFTEDFYHK-LCGGHL-QPVLDTL-----RYLRHETDVWLEITTLLIPGENDSDAELEAM 230
Query: 479 CSHVVETYGDE 489
C +VE G +
Sbjct: 231 CEWIVENLGPD 241
>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain.
Length = 122
Score = 29.7 bits (67), Expect = 1.9
Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 210 KVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQ 268
+ KL+ +A+ +QW ++G G + + + + +L+R + + I D +
Sbjct: 16 RAKLFRFDAEVKQWKERGVGDIKILKNKDDGKVRILMRRDQVLKVCANHYITPDMTLKPL 75
Query: 269 QDTLIVW---------SERDNYDLALSFQEKAGCDEIWEKI 300
+ W E LA+ F+ K D +K
Sbjct: 76 AGSDRSWVWTAADFADGEGKPEQLAIRFKTKEEADSFKKKF 116
>gnl|CDD|184284 PRK13732, PRK13732, single-stranded DNA-binding protein;
Provisional.
Length = 175
Score = 29.7 bits (66), Expect = 2.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 204 YLRTNSKVKLYALNADRQWDDKG-TGHVSSIYVEKHKGMSLLVRA 247
YLR ++V + R W+D G T +V+ I V+ M +L RA
Sbjct: 71 YLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRA 115
>gnl|CDD|221802 pfam12842, DUF3819, Domain of unknown function (DUF3819). This is
an uncharacterized domain that is found on the CCR4-Not
complex component Not1. Not1 is a global regulator of
transcription that affects genes positively and
negatively and is thought to regulate transcription
factor TFIID.
Length = 147
Score = 28.3 bits (64), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 39 DNYDLALSFQEKAGCDEIWEKIC 61
DN +LA + EKA ++ +I
Sbjct: 110 DNLELACALIEKAAAEKAVREID 132
Score = 28.3 bits (64), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 279 DNYDLALSFQEKAGCDEIWEKIC 301
DN +LA + EKA ++ +I
Sbjct: 110 DNLELACALIEKAAAEKAVREID 132
>gnl|CDD|222055 pfam13339, AATF-Che1, Apoptosis antagonizing transcription factor.
The N-terminal and leucine-zipper region of the
apoptosis antagonizing transcription factor-Che1.
Length = 122
Score = 27.7 bits (62), Expect = 9.3
Identities = 10/62 (16%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 507 NQAQDKLKDLKDKSSTNLLDSVSLLRNKMTTIHRSSRAHQEPRQMDEDEEIWFNEEDSFE 566
+ Q+ LK + K+ LL+++ LR + +S + + ++ +++W + +
Sbjct: 48 EEFQEALKSAE-KALLKLLNTLLELREALLDSSGNSESKKGKKRKTSSDDLWEEMQALDK 106
Query: 567 DA 568
Sbjct: 107 RL 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,942,874
Number of extensions: 3078494
Number of successful extensions: 2721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2720
Number of HSP's successfully gapped: 32
Length of query: 610
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 507
Effective length of database: 6,369,140
Effective search space: 3229153980
Effective search space used: 3229153980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.6 bits)