RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1734
(610 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.1 bits (181), Expect = 6e-14
Identities = 78/581 (13%), Positives = 168/581 (28%), Gaps = 197/581 (33%)
Query: 2 SLLVRAEADGTLLLESKIQT-----DTAYQKQQDTL---IVWSERDNYDLALSFQEKAGC 53
S+L + E D ++ + + T KQ++ + + R NY
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---------- 93
Query: 54 DEIWEKICQVQGKDPSVEITQDIIEESEDERFDDMSDGSPPIELPPCEINRLEEIKEL-- 111
+ I + + + PS + ++R D + + + ++RL+ +L
Sbjct: 94 --LMSPI-KTEQRQPS-----MMTRMYIEQR-DRLYNDNQV--FAKYNVSRLQPYLKLRQ 142
Query: 112 ---------------M----QTCLASPV-RKEKLAEAIESE------GYIRKLVGIFHMC 145
+ +T +A V K+ ++ + + M
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 146 EDL---------------ENLP-GLHCLYDILKSIFLLNK-TQLLDILFSDDI----ILD 184
+ L N+ +H + L+ + L +L ++ +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNVQNAKAWN 260
Query: 185 V--VGCLEYDPALTSPKRHRHYLRTNSKVKLYALNADRQWDDKGTGHVSSIYV----EKH 238
+ C + L T K L+A T H+S +
Sbjct: 261 AFNLSC-------------KILLTTRFKQVTDFLSAAT------TTHISLDHHSMTLTPD 301
Query: 239 KGMSLLVRA----------EAD----------GTLLLESKIQTDTAYQ----KQQDTLIV 274
+ SLL++ E + + D ++ + T+I
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIE 360
Query: 275 WS--------ERDNY-DLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIIEESE---- 321
S R + L++ F A I + + D ++ +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSV-FPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 322 -DERFDDMSDGSPPIELPPCEIN-RLEEIKEVRLNSSLLNPL-----LDNTKKDEVQVDS 374
+++ + + I +P + +++ E L+ S+++ D+ +D
Sbjct: 417 VEKQPKEST-----ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 375 YHNAQLLGVILELLSFCVEHHSYHIKN------------------FVLNKDLLRKVLVLM 416
Y F H +H+KN F+ K +R
Sbjct: 472 Y--------------FY-SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAW 514
Query: 417 KSCHTFL-VLSSLRFMRKIIAMKDDFYNRYI--IKGHLFQP 454
+ + L L L+F + I D Y R + I L +
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Score = 69.9 bits (170), Expect = 1e-12
Identities = 77/510 (15%), Positives = 154/510 (30%), Gaps = 132/510 (25%)
Query: 143 HMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKR-H 201
HM D E + DIL S+F D D+ ++ E D + S
Sbjct: 6 HM--DFETGEHQYQYKDIL-SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 202 RHYL-------RTNSKVKLY---ALNADRQW-------DDKGTGHVSSIYVEKHKGMSLL 244
+ V+ + L + ++ + + ++ +Y+E+
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD----- 117
Query: 245 VRAEADGTLL-------LESKIQTDTAYQKQQDTLIV-----------WSERDNYDLALS 286
R D + L+ ++ A + + V W +AL
Sbjct: 118 -RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-------VALD 169
Query: 287 ------FQEKAGCDEIWEKICQVQGKDPSVEITQDI---IEESEDERFDDMSDGSPPIEL 337
Q K W + + +E+ Q + I+ + R D S+ I
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 338 PPCEINRLEEIKEVRLNSSLLNPLLDNTKKDEVQVDSY-HNAQLL------GVILELLSF 390
E+ RL +K + LL +L N + + +++ + ++L V L +
Sbjct: 230 IQAELRRL--LKSKPYENCLL--VLLNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 391 CVEHHSYHIKNFVLNKD----LLRKVL--------VLMKSCHTFLVLSSLRFMRKIIAMK 438
H S + L D LL K L + + + + S+ I
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SI-----IAESI 337
Query: 439 DDFYNRYIIKGHLFQPVIDTFNR-NKGRYNLLDSAE---------------DI--KVLCS 480
D + + D + N+L+ AE I +L
Sbjct: 338 RDGLATW---DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS- 393
Query: 481 HVVETYGDELESIHYVQTFRSLRLKYNQAQDKLKDLKDKSST--NLLDSVSLLRNKMTTI 538
++ + + + V L K K+ + + ++ + + +
Sbjct: 394 -LIWFDVIKSDVMVVVNKLHKYSLV-------EKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 539 HRSSRAH-QEPRQMDEDEEI-------WFN 560
HRS H P+ D D+ I +++
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.0 bits (163), Expect = 1e-11
Identities = 78/546 (14%), Positives = 151/546 (27%), Gaps = 202/546 (36%)
Query: 88 MSDGS--PPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIF--- 142
+S GS + +P +++E L P + + +LVG F
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA---ELVGKFLGY 67
Query: 143 --HMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKR 200
+ E + L L F L +DI + L + T K
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTE-F----EN--CYLEGNDI-HALAAKLLQENDTTLVKT 119
Query: 201 H---RHYLR------------TNS---------KVKLYAL-----NADRQWDDKGTGHVS 231
++Y+ +NS +L A+ N D +++ +
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-----LR 174
Query: 232 SIYVEKHKGMSLLVRA---EADGTL--LLESKIQTDTAYQKQQDTLIVW-----SERDNY 281
+Y + + LV + TL L+ + + + + + + ++ W + D
Sbjct: 175 DLY-QTYHV---LVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKD 229
Query: 282 DLA---LSF------QEKAGCDEIWEKICQVQGKDP---------SVEITQDII------ 317
L +S Q + ++ G P + +Q ++
Sbjct: 230 YLLSIPISCPLIGVIQ--LAH---YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 318 EESEDERFDDMSD---------GS------PPIELPPCEINRLEEIKE--------VR-L 353
E E F G P LPP + E E + L
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 354 NSSLLNPLLD--NTKKDE---VQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLN--- 405
+ ++ N+ V++ S N KN V++
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEI-SLVNGA--------------------KNLVVSGPP 383
Query: 406 KDLLRKVLVLMKSC--------------------HTFLVL-----SSLRFMRKIIAM-KD 439
+ L L L K+ + FL + S L + +
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL--LVPASDLINK 441
Query: 440 DFYNRYI-IKGH-LFQPVIDTFNRNKGRYNLLDSAEDI-KVLC----------------- 479
D + + PV DTF+ G +L + I + +
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFD---GS-DLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 480 -SHVVE 484
+H+++
Sbjct: 498 ATHILD 503
Score = 56.6 bits (136), Expect = 2e-08
Identities = 54/328 (16%), Positives = 104/328 (31%), Gaps = 91/328 (27%)
Query: 328 MSDGS--PPIELPPCEINRLEEIKEVRLNSSLLNPLLDNTKKDEVQVDSYHNAQLLGVIL 385
+S GS + +P +++E + N L P DE A+L+G L
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQE-QFNKILPEPTEGFAADDE----PTTPAELVGKFL 65
Query: 386 ELLSFCVEHHSYHIKNFVLNKDLLRKVLVLMKSC-------HTFLVLSSLRFMRKIIAMK 438
+S VE + F +L L ++C H L L+ +
Sbjct: 66 GYVSSLVEPSK--VGQF---DQVLNLCLTEFENCYLEGNDIHA-LAAKLLQENDTTLVKT 119
Query: 439 DDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAED--IKVLCSHVV-------ETYGDE 489
+ YI + + D + + L + + ++ + + Y +E
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSA----LFRAVGEGNAQL---VAIFGGQGNTDDYFEE 172
Query: 490 LESIHYVQTFRSLRLKYNQAQDKLKDLKDKSSTNLLDSVSLLRNKMTTIHRSSRAHQEPR 549
L ++ QT+ L + DL S+ L L+R + + +
Sbjct: 173 LRDLY--QTYHVL----------VGDLIKFSAETLS---ELIRTT----LDAEKVF--TQ 211
Query: 550 QMDEDEEIWFNEEDSFED----ASADTSPPSVTSSQLGN-------------------SA 586
++ E W + D S S P + QL +
Sbjct: 212 GLNILE--WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 587 AS----NVITFESIEVISLITTWQQCSF 610
A+ ++T ++ I+ +W+ SF
Sbjct: 270 ATGHSQGLVT--AV-AIAETDSWE--SF 292
Score = 47.4 bits (112), Expect = 1e-05
Identities = 58/307 (18%), Positives = 92/307 (29%), Gaps = 113/307 (36%)
Query: 274 VWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEIT--------QDIIEESEDERF 325
VW+ DN+ F++ G I + +P V +T + I E F
Sbjct: 1645 VWNRADNH-----FKDTYG-----FSILDIVINNP-VNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 326 DDMSDGSPPIELPPCEINRLEEIKEVRLNSSLLNPLLDNTKKDEVQVDSYHNAQ--LLGV 383
+ + DG E EIN E S LL T+ Q L +
Sbjct: 1694 ETIVDGKLKTEKIFKEIN--EHSTSYTFRSE--KGLLSATQ----------FTQPALTLM 1739
Query: 384 ---ILELL--SFCVEH------HS---Y----HIKNFVLN-KDLLRKVLVLMKSCHTFLV 424
E L + HS Y + + V++ + L+ +V
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD-VMSIESLVE--VV---------- 1786
Query: 425 LSSLRFMRKIIAMKDDFYNRYIIKGHLFQPVI--DTFNR--------NKGRYNLLDSAED 474
F R G Q + D R N GR S E
Sbjct: 1787 -----FYR----------------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 475 IKVLCSHVVETYGDELESIHY----VQ-----TFRSLRLKYNQAQDKLKDLKDKS--STN 523
++ + V + G +E ++Y Q R+L + + L +K +
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL----DTVTNVLNFIKLQKIDIIE 1881
Query: 524 LLDSVSL 530
L S+SL
Sbjct: 1882 LQKSLSL 1888
Score = 45.0 bits (106), Expect = 8e-05
Identities = 56/406 (13%), Positives = 103/406 (25%), Gaps = 184/406 (45%)
Query: 4 LVRA---EADGTL--LLESKIQTDTAYQKQQDTLIVW-----SERDNYDLA---LSF--- 47
LV + TL L+ + + + + + + ++ W + D L +S
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 48 ---QEKAGCDEIWEKICQVQGKDP---------SVEITQDII------EESEDERFDDMS 89
Q + ++ G P + +Q ++ E E F
Sbjct: 242 GVIQ--LAH---YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 90 D---------GS------PPIELPPCEINRLEEIKELMQTCL------ASP---VR---K 122
G P LPP +++ L SP + +
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPP----------SILEDSLENNEGVPSPMLSISNLTQ 346
Query: 123 EKLAEAIESE------------------------GYIRKLVGIFHMCEDLENLPGL---- 154
E++ + + G + L G+ + GL
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 155 ---------------------HCLY----------DILKSIFLLNKTQL----------L 173
H D++K+ N +
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 174 DI-LFSDDIILDVVGCLEYDPA---LTSPKRHRHYLRTNSKVKLYALNADRQWDDKGTGH 229
D+ + S I +V C+ P T+ + H L D G G
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL------------------DFGPGG 508
Query: 230 VSSIYVEKHKGMSLLVRAEADGT----LL---LESKIQTDTAYQKQ 268
S G+ +L DGT ++ L+ D + KQ
Sbjct: 509 AS--------GLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF-KQ 545
Score = 38.1 bits (88), Expect = 0.011
Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 33/122 (27%)
Query: 34 VWSERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEIT--------QDIIEESEDERF 85
VW+ DN+ F++ G I + +P V +T + I E F
Sbjct: 1645 VWNRADNH-----FKDTYG-----FSILDIVINNP-VNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 86 DDMSDGSPPIELPPCEIN-RLEEI------KELMQTCLASP----VRKEKLA-EAIESEG 133
+ + DG E EIN L T P + EK A E ++S+G
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM--EKAAFEDLKSKG 1751
Query: 134 YI 135
I
Sbjct: 1752 LI 1753
Score = 37.0 bits (85), Expect = 0.025
Identities = 55/393 (13%), Positives = 109/393 (27%), Gaps = 148/393 (37%)
Query: 304 QGKDPSVEITQDIIEESEDERFDDMSDGSPPIEL------------PPCEINRLEEIKEV 351
Q ++ + + + E +E DD + + P EL P ++ + +++ +
Sbjct: 32 QLQE---QFNKILPEPTEGFAADD--EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 352 RLNS------------SLLNPLLDNTKKDEVQVD----SYHNAQLLGVILELLSFCVEHH 395
L +L LL V+ +Y A+++ F + +
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR----PFDKKSN 142
Query: 396 SYHIKNFVLNKDLLRKVLVLMKSCHTFLV----------LSSLRFMRKIIAMKDDFYNRY 445
S L R V + + LR D Y Y
Sbjct: 143 S----------ALFRAVG--EGNAQLVAIFGGQGNTDDYFEELR----------DLYQTY 180
Query: 446 -IIKGHLFQPVIDTFNRNKGRYNLLDSAEDIKVLCSHVV---------ETYGDE--LESI 493
++ G L + +T + L+ + D + + + + D+ L SI
Sbjct: 181 HVLVGDLIKFSAETLS------ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 494 -------------HYVQTFRSLRLKYNQAQDKLKDLKDKSSTNLLDSV------------ 528
HYV T + L + + LK +T +
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK-----GATGHSQGLVTAVAIAETDSW 289
Query: 529 -SLLRNKMTTIHRS----SRAHQ-------EPRQMDEDEEIWFNE--------------- 561
S + I R ++ P +++ E NE
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN--NEGVPSPMLSISNLTQE 347
Query: 562 --EDSFEDASADTSPPSVTSSQLGNSAASNVIT 592
+D ++ L N A + V++
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Score = 31.2 bits (70), Expect = 1.5
Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 64/193 (33%)
Query: 437 MKDDFYNRYIIKGHLFQPVIDTFNRNKGRYNLLDSAEDIKVLCSHVVETYGDELESIHYV 496
M D Y ++ + A++ H +TYG + I V
Sbjct: 1631 MGMDLYKTS--------KAAQ---------DVWNRADN------HFKDTYGFSILDI--V 1665
Query: 497 QTFRSLRLKYNQAQDKLKDLKDKSSTNLLDSVSLLRNKMTTIHRSSRAHQEPRQMDED-E 555
+ + K K +++ S + +++ + K I ++++E
Sbjct: 1666 INNPVNLTIHFGGE-KGKRIRENYSAMIFETIVDGKLKTEKI---------FKEINEHST 1715
Query: 556 EIWFNEEDSFEDASADTSPPSVTSSQ----------------------LG-NSA---ASN 589
F E A+ T P + LG +A ++
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD 1775
Query: 590 VITFESIEVISLI 602
V++ ES ++ ++
Sbjct: 1776 VMSIES--LVEVV 1786
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH)
domain, phosphotyrosine-binding (PTB) domain, protein
transport; NMR {Homo sapiens} SCOP: b.55.1.3
Length = 130
Score = 41.5 bits (97), Expect = 1e-04
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 210 KVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQ 268
+VKL+ +A+ QW ++G G++ + E + + +L+R E + I T +
Sbjct: 14 RVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPL 73
Query: 269 Q--DTLIVWSERDNYD-------LALSFQEKAGCDEIWEKICQVQ 304
D +W D D LA F+ +E +K + Q
Sbjct: 74 SGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQ 118
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Length = 150
Score = 38.5 bits (89), Expect = 0.002
Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 19/120 (15%)
Query: 208 NSKVKLYALN-ADRQWDDKGTGHVSSIYVEKHKGMS-------LLVRAEADGTLLLESKI 259
+ KL+ + + W ++G G + + L++R + L+L +K+
Sbjct: 31 QMQCKLFVFDKTSQSWVERGRGL---LRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL 87
Query: 260 QTDTAYQKQQDTLIVWSERDNYD-----LALSFQEKAGCD---EIWEKICQVQGKDPSVE 311
K + I + D D +S K + +I ++ + S
Sbjct: 88 WAQMQIDKASEKSIHITAMDTEDQGVKVFLISASSKDTGQLYAALHHRILALRSRVESGP 147
Score = 27.3 bits (60), Expect = 9.2
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 3 LLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYD-----LALSFQEKAGCD--- 54
L++R + L+L +K+ K + I + D D +S K
Sbjct: 71 LVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQGVKVFLISASSKDTGQLYA 130
Query: 55 EIWEKICQVQGKDPSVE 71
+ +I ++ + S
Sbjct: 131 ALHHRILALRSRVESGP 147
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated
nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Length = 138
Score = 36.5 bits (84), Expect = 0.007
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 210 KVKLYALN-ADRQWDDKGTGHVSSIYVEKHKGMS-------LLVRAEADGTLLLESKIQT 261
+ KL+ + + W G G + + L++R + L+L +K+
Sbjct: 21 QCKLFVFDKTSQSWVAVGRGL---LRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWA 77
Query: 262 DTAYQKQQDTLIVWSERDNYD 282
K + I + D D
Sbjct: 78 QMQIDKASEKSIRITAMDTED 98
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal
transduction, nuclear transport, GTP hydrolysis, ground
state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3
PDB: 1k5g_B*
Length = 201
Score = 34.8 bits (79), Expect = 0.040
Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 13/127 (10%)
Query: 210 KVKLYALNADR---QWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQ 266
+ KL+ ++ +W ++GTG V + ++ + LL+R + + I +
Sbjct: 52 RAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELK 111
Query: 267 KQQ--DTLIVWSERDNYD--------LALSFQEKAGCDEIWEKICQVQGKDPSVEITQDI 316
D VW+ ++ LA+ F + K + + + E
Sbjct: 112 PNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGS 171
Query: 317 IEESEDE 323
+ E
Sbjct: 172 GKNDHAE 178
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 35.0 bits (81), Expect = 0.065
Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 21 TDTAYQKQQDTLIVWSERDNYD-LALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIIEE 79
D +K ++ ++ R L +S +K G D+I + I ++ D + D+I+
Sbjct: 150 IDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDG 209
Query: 80 SEDERFDDMSDGSPPIELPPCEINRLEEIKELMQT-CLASPVRKEKLAEAIESEGYIRKL 138
+ D + ++ I+E + +A V++ +L +E+ G KL
Sbjct: 210 GDLVILVVPID--LGAPKGRLIMPQVHAIREALDREAIALVVKERELRYVMENIGMKPKL 267
Query: 139 VG 140
V
Sbjct: 268 VI 269
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein
60 kDa-like, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 125
Score = 32.5 bits (74), Expect = 0.10
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 210 KVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEAD-GTLLLESKIQTDTAYQKQ 268
K KL+ D ++ +KG G + + ++ LLVRA+ + G +LL I + +
Sbjct: 19 KCKLFYK-KDNEFKEKGIGTL-HLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRT 76
Query: 269 Q--DTLIVWSERDNYD---------LALSFQEKAGCDEIWEKICQVQ 304
+ LIV D + + + DE+ + + + +
Sbjct: 77 GKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKK 123
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear
protein), small GTPase, nuclear transport; HET: GNP;
2.96A {Homo sapiens} SCOP: b.55.1.3
Length = 134
Score = 32.7 bits (74), Expect = 0.13
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 208 NSKVKLYALNA-DRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQ 266
++ KL+ + ++W ++G G+V + + + LL+R E + I D
Sbjct: 26 CNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLT 85
Query: 267 KQQ--DTLIVWSERDNYD-------LALSFQEKAGCDEIWEKICQVQ 304
D VW D D LA+ F+ K + Q
Sbjct: 86 PNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQ 132
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding,
nucleotide-binding, NUCL protein transport, transport,
cytoplasm, GTPase activation; HET: GTP; 2.00A
{Saccharomyces cerevisiae}
Length = 191
Score = 32.9 bits (74), Expect = 0.17
Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 209 SKVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQK 267
+ KL+ +AD ++W ++GTG + +K + +L+R + + I + +
Sbjct: 79 VRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKP 138
Query: 268 QQ--DTLIVWSERDNYD--------LALSFQEKAGCDEIWEKICQVQ 304
D V++ + A+ F K D+ E+ + Q
Sbjct: 139 NVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQ 185
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and
neural wiskott-aldrich syndrome...; verprolin,
polyproline, protein- protein complex; NMR {Homo
sapiens}
Length = 169
Score = 32.0 bits (72), Expect = 0.31
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 211 VKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQD 270
V+LYA + + W K +G + + L + DG LL E ++ + Y +
Sbjct: 65 VQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRG 124
Query: 271 TLIVWSERDNYDLALSFQEKAGCDEIWEKICQ 302
+ D +AL+F + + + +
Sbjct: 125 YFHTF-AGDTCQVALNFANEEEAKKFRKAVTD 155
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome
protein interacting protein...; polyproline,
protein-protein complex; NMR {Rattus norvegicus} SCOP:
b.55.1.4
Length = 152
Score = 31.5 bits (71), Expect = 0.37
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 211 VKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQD 270
V+LYA + + W K +G + + L + DG LL E ++ + Y +
Sbjct: 48 VQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRG 107
Query: 271 TLIVWSERDNYDLALSFQEKAGCDEIWEKICQ 302
+ D +AL+F + + + +
Sbjct: 108 YFHTF-AGDTCQVALNFANEEEAKKFRKAVTD 138
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain,
signaling protein; 1.80A {Rattus norvegicus} SCOP:
b.55.1.4
Length = 168
Score = 29.9 bits (66), Expect = 1.8
Identities = 24/178 (13%), Positives = 44/178 (24%), Gaps = 22/178 (12%)
Query: 203 HYLRTNSKVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTD 262
T + V N + W V+ Y + + ++ S I +
Sbjct: 10 PIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPN 69
Query: 263 TAYQKQQDTLIVWS-ERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQDIIEESE 321
+ K W+ R N L F + + EK + +
Sbjct: 70 MTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFK----------------- 112
Query: 322 DERFDDMSDGSPPIELPPCEINRLEEIKEVRLNSSLLNPLLDNTKKDEVQVDSYHNAQ 379
+ + + + S L P N DE D N++
Sbjct: 113 ----EAARLAKEKSQEKMELTSTPSQESAGGDLQSPLTPESINGTDDERTPDVTQNSE 166
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven
stranded anti-parallel beta barrel closed by AN alpha
helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Length = 130
Score = 28.9 bits (64), Expect = 2.3
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 202 RHYLRTNSKVKLYALNADRQW--DDKGTGHVSSIYVEKHKGMS---LLVRAEADGTLLLE 256
+ + + V +Y + ++W G S I + + S ++ D +++
Sbjct: 4 QSICQARASVMVYD-DTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVIN 62
Query: 257 SKIQTDTAYQKQQDTLIVWS-ERDNYDLALSFQEKA 291
I Y + T W R Y L+F K
Sbjct: 63 YSIVKGLKYNQATPTFHQWRDARQVY--GLNFASKE 96
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 2.3
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 489 ELESIHYVQTFRSLRLKYNQAQDKLK--DLKDKSSTNLLDSVSLLRNKMTTIHRSSRAHQ 546
E ESI + + RL+ A K+ + ++K+ +L + ++ ++R
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 547 EPRQMDEDEEI 557
+ D +I
Sbjct: 143 KAFYQQPDADI 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,296,875
Number of extensions: 560146
Number of successful extensions: 1385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 40
Length of query: 610
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 511
Effective length of database: 3,937,614
Effective search space: 2012120754
Effective search space used: 2012120754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.2 bits)