RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1734
(610 letters)
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 114
Score = 102 bits (256), Expect = 1e-26
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 207 TNSKVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQ 266
+++ V+LYA + + W K +G + + L + DG LL E ++ + Y
Sbjct: 14 SSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYN 73
Query: 267 KQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGK 306
+ + D +AL+F + + + + + G+
Sbjct: 74 SPRGYFHTF-AGDTCQVALNFANEEEAKKFRKAVTDLLGR 112
Score = 68.7 bits (168), Expect = 8e-15
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 1 MSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKI 60
L + DG LL E ++ + Y + + D +AL+F + + + +
Sbjct: 48 YFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTF-AGDTCQVALNFANEEEAKKFRKAV 106
Query: 61 CQVQGK 66
+ G+
Sbjct: 107 TDLLGR 112
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 118
Score = 59.9 bits (145), Expect = 1e-11
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 210 KVKLYALN-ADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQ 268
+VKL+ + QW ++G G++ + E + + +L+R E + I T +
Sbjct: 8 RVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPL 67
Query: 269 Q--DTLIVWSERDNYD-------LALSFQEKAGCDEIWEKICQVQ 304
D +W D D LA F+ +E +K + Q
Sbjct: 68 SGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQ 112
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 48.4 bits (115), Expect = 2e-07
Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 13/110 (11%)
Query: 210 KVKLYALNAD-RQWDDKGTGHVSSIYVEKH----KGMSLLVRAEADGTLLLESKIQTDTA 264
+ KL+ + + W ++G G + + L++R + L+L +K+
Sbjct: 26 QCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQ 85
Query: 265 YQKQQDTLIVWSERDNYD-----LALSFQEKAGCD---EIWEKICQVQGK 306
K + I + D D +S K + +I ++ +
Sbjct: 86 IDKASEKSIHITAMDTEDQGVKVFLISASSKDTGQLYAALHHRILALRSR 135
Score = 33.0 bits (75), Expect = 0.035
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 3 LLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYD-----LALSFQEKAGCD--- 54
L++R + L+L +K+ K + I + D D +S K
Sbjct: 64 LVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQGVKVFLISASSKDTGQLYA 123
Query: 55 EIWEKICQVQGK 66
+ +I ++ +
Sbjct: 124 ALHHRILALRSR 135
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 47.3 bits (112), Expect = 3e-07
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 206 RTNSKVKLYALNADRQWDDKGTGHVSSIYVEKHKGMS------LLVRAEADGTLLLESKI 259
+ + V LY + +++W GTG + V+ + + + + + D +++ I
Sbjct: 8 SSRATVMLYD-DGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAI 66
Query: 260 QTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQ 304
Y + W + L+F K + +
Sbjct: 67 VRGVKYNQATPNFHQWRD-ARQVWGLNFGSKEDAAQFAAGMASAL 110
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 38.7 bits (90), Expect = 4e-04
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 210 KVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQ 268
+ KL+ + + ++W ++G G+V + + + LL+R E + I D
Sbjct: 28 RAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPN 87
Query: 269 Q--DTLIVWSERDNYD-------LALSFQEKAGCDEIWEKICQVQ 304
D VW D D LA+ F+ K + Q
Sbjct: 88 AGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQ 132
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 33.0 bits (75), Expect = 0.042
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 210 KVKLYAL---NADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQ 266
+ KL+ N +W ++GTG V + ++ + LL+R + + I +
Sbjct: 31 RAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELK 90
Query: 267 KQ--QDTLIVWSERDNYD--------LALSFQEKAGCDEIWEKICQVQ 304
D VW+ ++ LA+ F + K + +
Sbjct: 91 PNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECR 138
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 29.2 bits (65), Expect = 1.4
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 11/134 (8%)
Query: 295 EIWEKICQVQGKDPSVEITQDIIEESEDERFDDMSDGSPPIELPPCEINRLEEIKEVRLN 354
WE C G P ++ D D+ F+ + + P + V L
Sbjct: 19 ACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF-------VDLE 71
Query: 355 SSLLNPLLDNTKKDEVQVDSYHNAQLLGVILELLSFCVEHHSYHIKNFVLNKDLLRKVLV 414
++++ + T + + + ++ H++ + L D +RK+
Sbjct: 72 PTVIDEVRTGTYRQLFHPEQLITGKEDAA----NNYARGHYTIGKEIIDLVLDRIRKLAD 127
Query: 415 LMKSCHTFLVLSSL 428
F V S
Sbjct: 128 QCTGLQGFSVFHSF 141
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase) {Escherichia
coli [TaxId: 562]}
Length = 315
Score = 29.1 bits (64), Expect = 1.4
Identities = 12/93 (12%), Positives = 31/93 (33%)
Query: 143 HMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPKRHR 202
+ LE + + + LL+ + D S+ I + + + +
Sbjct: 17 AIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPA 76
Query: 203 HYLRTNSKVKLYALNADRQWDDKGTGHVSSIYV 235
++ N ++ ++A Q D + S +
Sbjct: 77 DFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,278,859
Number of extensions: 110321
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 17
Length of query: 610
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 519
Effective length of database: 1,158,166
Effective search space: 601088154
Effective search space used: 601088154
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)