BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17340
         (200 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L9K|W Chain W, Insights Into Dynein Assembly From A Dynein Intermediate
           Cha Chain Roadblock Structure
 pdb|3L9K|X Chain X, Insights Into Dynein Assembly From A Dynein Intermediate
           Cha Chain Roadblock Structure
 pdb|3L9K|Y Chain Y, Insights Into Dynein Assembly From A Dynein Intermediate
           Cha Chain Roadblock Structure
 pdb|3L9K|Z Chain Z, Insights Into Dynein Assembly From A Dynein Intermediate
           Cha Chain Roadblock Structure
          Length = 38

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query: 151 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 187
           LSE++K  I LSE FQ FV R GRV+ER L+E  D+Y
Sbjct: 1   LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIY 37


>pdb|3G40|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A
           Prokaryotic Cation Chloride Cotransporter
          Length = 294

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 43  QEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKD 89
           QE+         D AE E+N ++ ++  T S   P IL   LP+ +D
Sbjct: 76  QEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD 122


>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
 pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
 pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
          Length = 2006

 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 90  VKPAITSLEHTEIKKEETKPTSKLPPGILPHGLPQVKDVKP---AITSLEHTEIKKEETK 146
           V+ AIT L    ++  E  P + LPP IL   L   + V     +I++L   +++    K
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355

Query: 147 PIVELSEDEKLKITLSEEFQHFV 169
               L   ++++I+L    ++ V
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLV 378


>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
           Synthase Type I Multienzyme Complex
 pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
           Synthase Type I Multienzyme Complex
 pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
           Synthase Type I Multienzyme Complex
 pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
 pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
 pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
 pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
           Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
 pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
           Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
 pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
           Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
          Length = 2051

 Score = 27.3 bits (59), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 90  VKPAITSLEHTEIKKEETKPTSKLPPGILPHGLPQVKDVKP---AITSLEHTEIKKEETK 146
           V+ AIT L    ++  E  P + LPP IL   L   + V     +I++L   +++    K
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355

Query: 147 PIVELSEDEKLKITLSEEFQHFV 169
               L   ++++I+L    ++ V
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLV 378


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.135    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,268,126
Number of Sequences: 62578
Number of extensions: 267618
Number of successful extensions: 495
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 14
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)