BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17340
(200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24246|DYIN_DROME Cytoplasmic dynein 1 intermediate chain OS=Drosophila melanogaster
GN=sw PE=1 SV=3
Length = 663
Score = 103 bits (258), Expect = 6e-22, Method: Composition-based stats.
Identities = 56/92 (60%), Positives = 66/92 (71%), Gaps = 7/92 (7%)
Query: 110 TSKLPPGILPHGLPQVKDVKPAITSLE---HTEIKKEETKPIVELSEDEKLKITLSEEFQ 166
TSKLPPG L HGLP VKDV PAIT LE TE+KKE + ELSE++K I LSE FQ
Sbjct: 202 TSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKE----VNELSEEQKQMIILSENFQ 257
Query: 167 HFVARTGRVMERLLAEKSDMYKDYMGLGDADE 198
FV R GRV+ER L+E D+Y DY+G GD++E
Sbjct: 258 RFVVRAGRVIERALSENVDIYTDYIGGGDSEE 289
>sp|O88485|DC1I1_MOUSE Cytoplasmic dynein 1 intermediate chain 1 OS=Mus musculus
GN=Dync1i1 PE=1 SV=2
Length = 628
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 6/70 (8%)
Query: 128 VKPAI---TSLEHTEIKKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAE 182
V+P I + LE+ E KK+ETK P EL+E+EK +I SEEF F RT RV+ER LAE
Sbjct: 172 VEPKIGHDSELENQE-KKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAE 230
Query: 183 KSDMYKDYMG 192
SD++ DY G
Sbjct: 231 DSDIFFDYSG 240
>sp|Q63100|DC1I1_RAT Cytoplasmic dynein 1 intermediate chain 1 OS=Rattus norvegicus
GN=Dync1i1 PE=1 SV=1
Length = 643
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 141 KKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMG 192
KK+ETK P EL+E+EK +I SEEF F RT RV+ER LAE SD++ DY G
Sbjct: 202 KKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG 255
>sp|Q29RQ3|DC1I1_BOVIN Cytoplasmic dynein 1 intermediate chain 1 OS=Bos taurus GN=DYNC1I1
PE=1 SV=1
Length = 608
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 134 SLEHTEIKKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYM 191
S + E KK+E K P EL+E+EK +I SEEF F RT RV+ER LAE SD++ DY
Sbjct: 160 SEQENEDKKQEVKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYS 219
Query: 192 G 192
G
Sbjct: 220 G 220
>sp|O14576|DC1I1_HUMAN Cytoplasmic dynein 1 intermediate chain 1 OS=Homo sapiens
GN=DYNC1I1 PE=1 SV=2
Length = 645
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 141 KKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMG 192
KK+E K P EL+E+EK +I SEEF F RT RV+ER LAE SD++ DY G
Sbjct: 204 KKQEVKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG 257
>sp|O88487|DC1I2_MOUSE Cytoplasmic dynein 1 intermediate chain 2 OS=Mus musculus
GN=Dync1i2 PE=2 SV=1
Length = 612
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 140 IKKEETK----PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGD 195
+KK+E P EL+E+EK +I SEEF F + R++ER L+E+ +++ DY G
Sbjct: 167 LKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDL 226
Query: 196 ADEIG 200
D+ G
Sbjct: 227 EDKEG 231
>sp|Q62871|DC1I2_RAT Cytoplasmic dynein 1 intermediate chain 2 OS=Rattus norvegicus
GN=Dync1i2 PE=1 SV=1
Length = 638
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 140 IKKEETK----PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGD 195
+KK+E P EL+E+EK +I SEEF F + R++ER L+E+ +++ DY G
Sbjct: 193 LKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDL 252
Query: 196 ADEIG 200
D+ G
Sbjct: 253 EDKEG 257
>sp|Q5NVM2|DC1I2_PONAB Cytoplasmic dynein 1 intermediate chain 2 OS=Pongo abelii
GN=DYNC1I2 PE=2 SV=1
Length = 638
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 140 IKKEETK----PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGD 195
+KK+E P EL+E+EK +I SEEF F + R++ER L+E+ +++ DY G
Sbjct: 193 LKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDL 252
Query: 196 ADEIG 200
D+ G
Sbjct: 253 EDKEG 257
>sp|Q13409|DC1I2_HUMAN Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens
GN=DYNC1I2 PE=1 SV=3
Length = 638
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 140 IKKEETK----PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGD 195
+KK+E P EL+E+EK +I SEEF F + R++ER L+E+ +++ DY G
Sbjct: 193 LKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDL 252
Query: 196 ADEIG 200
D+ G
Sbjct: 253 EDKEG 257
>sp|Q0III3|DC1I2_BOVIN Cytoplasmic dynein 1 intermediate chain 2 OS=Bos taurus GN=DYNC1I2
PE=1 SV=1
Length = 612
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 140 IKKEETK----PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGD 195
+KK+E P EL+E+EK +I SEEF F + R++ER L+E+ +++ DY G
Sbjct: 167 LKKDEESDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDL 226
Query: 196 ADEIG 200
D+ G
Sbjct: 227 EDKEG 231
>sp|P54703|DYIN_DICDI Cytoplasmic dynein 1 intermediate chain OS=Dictyostelium discoideum
GN=dicA PE=2 SV=2
Length = 654
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 150 ELSEDEKLKITLSEEFQHFVARTGRVMERLLA--EKSDMYKDY 190
EL E+EK I S+ F+ F R+ RV+ER L + D+ DY
Sbjct: 209 ELDENEKKDILESDSFKSFFGRSSRVIERALCLDDSIDILVDY 251
>sp|Q867X0|PME3_CAEEL Poly(ADP-ribose) glycohydrolase pme-3 OS=Caenorhabditis elegans
GN=pme-3 PE=2 SV=1
Length = 781
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Query: 3 PIGICRI-----SSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSY---------- 47
P CRI S VEK+ + TY + G V L + ++
Sbjct: 454 PFSFCRILSSDKSICVEKLKFLFTYFDKMSMDPPDGAVSFRLTKMDKDTFNEEWKDKKLR 513
Query: 48 -LPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQ 86
LP+V +DE ED +L F L G+L HG Q
Sbjct: 514 SLPEVEFFDEMLIEDTALCTQVDFANEHLGGGVLNHGSVQ 553
>sp|A2VDJ0|T131L_HUMAN Transmembrane protein 131-like OS=Homo sapiens GN=KIAA0922 PE=1 SV=2
Length = 1609
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Query: 43 QEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEI 102
Q+ LPK L E N+++ + + + GI P+ D+K + + E E
Sbjct: 1043 QKNLTLPKNLLNKEENTLKNTIVFSNPSSECSMKEGIQTCMFPKETDIKTSENTAEFKER 1102
Query: 103 KKEETKPTSKLPPGILPHGLPQVKDVK-PAITSLEHTEIKKEETKPIVELSEDEKLKITL 161
+ K + KLP LP PQ P I+ + ++ K V+ E+ K K+
Sbjct: 1103 ELCPLKTSKKLPENHLPRNSPQYHQPDLPEISRKNNGNNQQVPVKNEVDHCENLK-KVDT 1161
Query: 162 SEEFQHFVARTGRVMERLLAEKSDM 186
+ + +T R E + +EK D+
Sbjct: 1162 KPSSEKKIHKTSR--EDMFSEKQDI 1184
>sp|Q99161|SEC62_YARLI Translocation protein SEC62 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=SEC62 PE=3 SV=2
Length = 396
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 77 PGILPHGLPQVKDVKPAITSLEHTEIKKEETKPTSKLPP 115
PGIL VK AI +LE + K+ ++KP SKLPP
Sbjct: 43 PGILNGKRSDFFRVKRAIRALEDPKYKQLQSKPNSKLPP 81
>sp|A5UJ98|SYM_METS3 Methionine--tRNA ligase OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=metG PE=3 SV=1
Length = 660
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 124 QVKDVKPAITSLEHTEI--KKEETKPIVELSEDEKLKITLS-EEFQHFVARTGRVMERLL 180
++ KP T +E I +KEE + ++ SEDE + +S ++F V + G+V E
Sbjct: 520 KINKAKPLFTKIEDDVINKQKEELQKNLKESEDENMSDLISIDDFDKVVIKIGQVKEAEK 579
Query: 181 AEKSD-MYKDYMGLGD 195
EKSD + K + +GD
Sbjct: 580 IEKSDKLLKLQVDIGD 595
>sp|Q1GCG7|SECA_RUEST Protein translocase subunit SecA OS=Ruegeria sp. (strain TM1040)
GN=secA PE=3 SV=1
Length = 895
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 23/124 (18%)
Query: 61 DNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPTSKLPPGILPH 120
D +++ ID FT +P L GL Q AI + E T+I+ E T S +
Sbjct: 320 DGNVVLIDEFTGRMMPGRRLSEGLHQ------AIEAKEGTDIQPENTTLAS-----VTFQ 368
Query: 121 GLPQVKDVKPAITSLEHTEIKKEE------------TKPIVELSEDEKLKITLSEEFQHF 168
++ D +T TE ++ +PI + ED+K+ T +E++
Sbjct: 369 NYFRLYDKLSGMTGTAMTEAEEFAEIYGLGVVEVPTNRPIARIDEDDKVYRTANEKYAAM 428
Query: 169 VART 172
+A T
Sbjct: 429 IAET 432
>sp|P41685|P53_FELCA Cellular tumor antigen p53 OS=Felis catus GN=TP53 PE=2 SV=1
Length = 386
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 2 PPIGIC-RISSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQ 43
PP G C R +I +K + + +R CP H+ D GL P Q
Sbjct: 143 PPPGTCVRAMAIYKKSEFMTEVVRRCPHHERCPDSSDGLAPPQ 185
>sp|O46043|PARG_DROME Poly(ADP-ribose) glycohydrolase OS=Drosophila melanogaster GN=Parg
PE=1 SV=2
Length = 768
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 20/95 (21%)
Query: 11 SIVEKVDLVETYLR-VCPLHKSSGDVPQGLFPAQEQSYLPK-VLTYDEA----------- 57
+++EK+ + Y R VCP + + +VP G+ +S LP+ ++ + ++
Sbjct: 291 AVLEKLKCIMHYFRRVCPTERDASNVPTGVVTFVRRSGLPEHLIDWSQSAAPLGDVPLHV 350
Query: 58 ------EDEDNSLINIDGFTTSKLPPGILPHGLPQ 86
EDE L+ +D F L G+L HG Q
Sbjct: 351 DAEGTIEDEGIGLLQVD-FANKYLGGGVLGHGCVQ 384
>sp|P65289|LIP1_STAAN Lipase 1 OS=Staphylococcus aureus (strain N315) GN=lip1 PE=3 SV=2
Length = 680
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 34 DVPQGLFPAQEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVK--DVK 91
DV QGL A KV + ++++ DNS D + LP L P + D
Sbjct: 133 DVNQGLEQAINDGKQSKVASQQQSKEVDNSQ---DSNANNNLPSQSLTKEAPSLNKSDQT 189
Query: 92 PAITSLEHTEIKKEETKPTSKLPPGILPHGLPQVKDVKPAI--TSLEHTEIKKEETKPIV 149
+ TEI+K + + ++ I H ++VKP +L +++K + P+
Sbjct: 190 SQREIVNETEIEKVQPQQNNQANDKITNHNFNNEQEVKPQKDEKTLSVSDLKNNQKSPVE 249
Query: 150 ELSEDEK 156
+++K
Sbjct: 250 PTKDNDK 256
>sp|P65288|LIP1_STAAM Lipase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=lip1 PE=3 SV=2
Length = 680
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 34 DVPQGLFPAQEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVK--DVK 91
DV QGL A KV + ++++ DNS D + LP L P + D
Sbjct: 133 DVNQGLEQAINDGKQSKVASQQQSKEVDNSQ---DSNANNNLPSQSLTKEAPSLNKSDQT 189
Query: 92 PAITSLEHTEIKKEETKPTSKLPPGILPHGLPQVKDVKPAI--TSLEHTEIKKEETKPIV 149
+ TEI+K + + ++ I H ++VKP +L +++K + P+
Sbjct: 190 SQREIVNETEIEKVQPQQNNQANDKITNHNFNNEQEVKPQKDEKTLSVSDLKNNQKSPVE 249
Query: 150 ELSEDEK 156
+++K
Sbjct: 250 PTKDNDK 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,157,311
Number of Sequences: 539616
Number of extensions: 3593474
Number of successful extensions: 9373
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 9311
Number of HSP's gapped (non-prelim): 107
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)