Query psy17340
Match_columns 200
No_of_seqs 90 out of 101
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 19:46:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11540 Dynein_IC2: Cytoplasm 98.9 1.9E-10 4.1E-15 74.7 -1.4 31 24-54 1-32 (33)
2 KOG1587|consensus 97.9 2.4E-05 5.2E-10 75.1 6.6 123 20-194 40-163 (555)
3 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 50.0 20 0.00044 25.0 2.9 35 150-184 4-45 (50)
4 PF09670 Cas_Cas02710: CRISPR- 49.9 18 0.00038 33.2 3.3 40 155-194 41-81 (379)
5 TIGR01441 GPR GPR endopeptidas 35.7 57 0.0012 31.1 4.3 93 79-181 225-341 (358)
6 PF13998 MgrB: MgrB protein 24.0 37 0.0008 21.9 0.7 10 4-13 18-27 (29)
7 cd01277 HINT_subgroup HINT (hi 23.6 2.1E+02 0.0046 20.1 4.7 40 143-188 43-83 (103)
8 PF08920 SF3b1: Splicing facto 22.8 28 0.00062 28.8 0.0 25 141-165 77-101 (144)
9 PRK03430 hypothetical protein; 20.8 79 0.0017 26.6 2.3 35 147-181 69-112 (157)
10 COG3048 DsdA D-serine dehydrat 20.6 47 0.001 32.1 1.0 25 148-172 137-161 (443)
No 1
>PF11540 Dynein_IC2: Cytoplasmic dynein 1 intermediate chain 2; PDB: 2PG1_L 3FM7_D 2P2T_C.
Probab=98.86 E-value=1.9e-10 Score=74.74 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=16.0
Q ss_pred ccccccccccCCCCcCCCCccce-eccccccc
Q psy17340 24 RVCPLHKSSGDVPQGLFPAQEQS-YLPKVLTY 54 (200)
Q Consensus 24 ~r~pl~ls~~~v~~~~ippke~~-Y~k~tqT~ 54 (200)
+|+|.+|++++|+++||||||.+ |+|+|||+
T Consensus 1 ~rk~~~L~~s~v~~~dipPkE~v~YsK~TQT~ 32 (33)
T PF11540_consen 1 GRKPKKLGVSKVTQTDIPPKETVSYSKETQTP 32 (33)
T ss_dssp ------EEEB-EEEEEE------EEEEEEE--
T ss_pred CCCcceeeEEEEEEeccCCccceeEecccccc
Confidence 58999999999999999999999 99999996
No 2
>KOG1587|consensus
Probab=97.90 E-value=2.4e-05 Score=75.05 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=90.5
Q ss_pred hhccccccccccccCCCCcCCCCccce-eccccccccccccccccccccCCccccCCCCCCcCCCCCCccccCCcccccc
Q psy17340 20 ETYLRVCPLHKSSGDVPQGLFPAQEQS-YLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLE 98 (200)
Q Consensus 20 ~~~~~r~pl~ls~~~v~~~~ippke~~-Y~k~tqT~~~~~~e~~~~~~~d~~~~~~lppgilphg~p~Vk~v~pavt~~e 98 (200)
.-.+++..+++...+..+..+|+++.+ |++++++.+..........+- .+ ..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~s~~~~~~~~~~~~~~~~~~~--~~------------------------~~- 92 (555)
T KOG1587|consen 40 DEDVRRGSLKPELIETTQYRNPPKTSVQYSKQTASSVIEQENPTSTSTG--WT------------------------HY- 92 (555)
T ss_pred hhhccccCCchhhhhhhhccCcccceeEeccccccccccccCCcccccc--ee------------------------ec-
Confidence 345688899999999999999999999 999999987433222211111 01 10
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhccccCCCCCCHHHHhhccCchHHHHHHHhhhHHHHH
Q psy17340 99 HTEIKKEETKPTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFVARTGRVMER 178 (200)
Q Consensus 99 ~~~~~k~~~~~~~~~~~g~~p~~~p~~~~v~~~~te~e~~EkekE~e~~irELSEEEk~~I~~SeeF~~FfeRSSRVIER 178 (200)
.|..++|++. +...++++...++..+..+++++++.+....|..|++++.++|.|
T Consensus 93 ---------------------~~~~~~k~~~----~~~eee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 147 (555)
T KOG1587|consen 93 ---------------------EGGWTDKDLE----ELDEEEKKRTKKKKPKDDTEEEKSMSLEIEMMLNFFQNNAIDIYR 147 (555)
T ss_pred ---------------------cccCcccccc----ccchhhhcccccccCccCcHHHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 1222344442 233344444556778899999999999999999999999999999
Q ss_pred hhccCcceeeccCCCC
Q psy17340 179 LLAEKSDMYKDYMGLG 194 (200)
Q Consensus 179 ALsE~yDI~~DYT~~~ 194 (200)
||+++.+++.||+...
T Consensus 148 ~l~~~~~~~~~~~~~~ 163 (555)
T KOG1587|consen 148 ALAEDINVFGDYTDRP 163 (555)
T ss_pred Hhhcccccccccccch
Confidence 9999999999998754
No 3
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=50.00 E-value=20 Score=24.99 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCHHHHhhc-------cCchHHHHHHHhhhHHHHHhhccCc
Q psy17340 150 ELSEDEKLKI-------TLSEEFQHFVARTGRVMERLLAEKS 184 (200)
Q Consensus 150 ELSEEEk~~I-------~~SeeF~~FfeRSSRVIERALsE~y 184 (200)
.||+.|+.+| ++.-+...++.||-.+|-|.|.+..
T Consensus 4 ~Lt~~Eqaqid~m~qlG~s~~~isr~i~RSr~~Ir~yl~dP~ 45 (50)
T PF11427_consen 4 TLTDAEQAQIDVMHQLGMSLREISRRIGRSRTCIRRYLKDPV 45 (50)
T ss_dssp ---HHHHHHHHHHHHTT--HHHHHHHHT--HHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhchhHHHHHHHhCccHHHHHHHhcChh
Confidence 5888888876 3456788999999999999998764
No 4
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.87 E-value=18 Score=33.17 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=33.0
Q ss_pred HHhhccCchHHHHHHHhhhHHHHHhhc-cCcceeeccCCCC
Q psy17340 155 EKLKITLSEEFQHFVARTGRVMERLLA-EKSDMYKDYMGLG 194 (200)
Q Consensus 155 Ek~~I~~SeeF~~FfeRSSRVIERALs-E~yDI~~DYT~~~ 194 (200)
+...+...++|.++++...++++++.. ...+|++|||||.
T Consensus 41 ~~~~~~d~dD~~~~y~~l~~~l~~~~~~~~~~v~vDiTGGT 81 (379)
T PF09670_consen 41 EEIVIVDPDDPLECYRKLREVLEKLRDFPGHEVAVDITGGT 81 (379)
T ss_pred ceEeeCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCCH
Confidence 555667789999999999999999943 2478999999983
No 5
>TIGR01441 GPR GPR endopeptidase. This model describes a tetrameric protease that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs.
Probab=35.73 E-value=57 Score=31.06 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=51.8
Q ss_pred CcCCCCCCccccCCcccccc--------hhhh-ccccCCCCCCCCCCCCCCCCCccccccccccchhhhh--hhhccccC
Q psy17340 79 ILPHGLPQVKDVKPAITSLE--------HTEI-KKEETKPTSKLPPGILPHGLPQVKDVKPAITSLEHTE--IKKEETKP 147 (200)
Q Consensus 79 ilphg~p~Vk~v~pavt~~e--------~~~~-~k~~~~~~~~~~~g~~p~~~p~~~~v~~~~te~e~~E--kekE~e~~ 147 (200)
+..=|.|+|.+. .|=+. |... .++...+..+|+|+.+.-| -+. +|+..... +++.--.-
T Consensus 225 VIAIGVPTVVdA---~tI~~Dtid~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~r~~~~~~ 294 (358)
T TIGR01441 225 VIAVGVPTVVDA---VTIASDTIDYVLKHFGREVSEDKPSRALAPAGMTFGE------RRE-LTDEDLPPEEKRKTFLGL 294 (358)
T ss_pred EEEEcCCeeech---HHHHHHHHHHHHHHHHhhhhccCcccccccccccccc------ccc-cccccccchhhhhhhhhh
Confidence 456689999873 22211 1111 1222235566666665543 122 44433332 22222355
Q ss_pred CCCCCHHHHhhcc-------------CchHHHHHHHhhhHHHHHhhc
Q psy17340 148 IVELSEDEKLKIT-------------LSEEFQHFVARTGRVMERLLA 181 (200)
Q Consensus 148 irELSEEEk~~I~-------------~SeeF~~FfeRSSRVIERALs 181 (200)
++.|+++||.+++ .--|--.|++|-|+||-.+|+
T Consensus 295 ~~~~~~~Ek~~li~EvL~P~~~~L~VTPKeID~~i~~~a~iIa~giN 341 (358)
T TIGR01441 295 LGTLDEEEKRQLIYEVLNPLGHNLMVTPKEVDMFIEDMANVIASGLN 341 (358)
T ss_pred hccCCHHHHHHHHHHHhCcccCcceECcHhHHHHHHHHHHHHHHHHH
Confidence 7899999998754 223556899999999766654
No 6
>PF13998 MgrB: MgrB protein
Probab=24.03 E-value=37 Score=21.93 Aligned_cols=10 Identities=40% Similarity=0.982 Sum_probs=8.0
Q ss_pred ceeeeeechh
Q psy17340 4 IGICRISSIV 13 (200)
Q Consensus 4 ~~~~~~~~~~ 13 (200)
.|||+|.+++
T Consensus 18 ~GiC~it~~i 27 (29)
T PF13998_consen 18 SGICSITRFI 27 (29)
T ss_pred eeeeEEeeec
Confidence 4999998764
No 7
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=23.57 E-value=2.1e+02 Score=20.14 Aligned_cols=40 Identities=13% Similarity=0.304 Sum_probs=30.6
Q ss_pred ccccCCCCCCHHHHhhccCchHHHHHHHhhhHHHHHhhc-cCcceee
Q psy17340 143 EETKPIVELSEDEKLKITLSEEFQHFVARTGRVMERLLA-EKSDMYK 188 (200)
Q Consensus 143 E~e~~irELSEEEk~~I~~SeeF~~FfeRSSRVIERALs-E~yDI~~ 188 (200)
.....+.+||++|+. +|...+.+.++.+++.+. +.|.++.
T Consensus 43 ~H~~~~~~l~~~e~~------~l~~~~~~v~~~l~~~~~~~~~n~~~ 83 (103)
T cd01277 43 KHYENLLDLDPEELA------ELILAAKKVARALKKALKADGLNILQ 83 (103)
T ss_pred cccCChhhCCHHHHH------HHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 334457789999876 788899999999999985 3576654
No 8
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=22.84 E-value=28 Score=28.81 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=16.0
Q ss_pred hhccccCCCCCCHHHHhhccCchHH
Q psy17340 141 KKEETKPIVELSEDEKLKITLSEEF 165 (200)
Q Consensus 141 ekE~e~~irELSEEEk~~I~~SeeF 165 (200)
++|....-|.||+||+.+||-|+-|
T Consensus 77 ~~eid~RNrpLTDEELD~mLPseGY 101 (144)
T PF08920_consen 77 EKEIDERNRPLTDEELDAMLPSEGY 101 (144)
T ss_dssp HHHHHHCTS-S-HHHHHHTS--SSE
T ss_pred ccchhhccCcCCHHHHHHhCCcCCc
Confidence 3455566789999999999977654
No 9
>PRK03430 hypothetical protein; Validated
Probab=20.85 E-value=79 Score=26.61 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=29.6
Q ss_pred CCCCCCHHHHhhc-cCchHHHHHHHhhh--------HHHHHhhc
Q psy17340 147 PIVELSEDEKLKI-TLSEEFQHFVARTG--------RVMERLLA 181 (200)
Q Consensus 147 ~irELSEEEk~~I-~~SeeF~~FfeRSS--------RVIERALs 181 (200)
.+|-.|++|.+.+ ..+-.|.-|++++. -||+||++
T Consensus 69 s~RIYt~~E~~~L~~e~rGFL~fLEq~gvL~~~~RE~VIdR~Ma 112 (157)
T PRK03430 69 SMRIYTPEECERLDASCRGFLLFLEQIQVLNLETREMVIDRVMA 112 (157)
T ss_pred ceeeeCHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence 4788899999887 45778999999974 59999997
No 10
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=20.58 E-value=47 Score=32.10 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=21.1
Q ss_pred CCCCCHHHHhhccCchHHHHHHHhh
Q psy17340 148 IVELSEDEKLKITLSEEFQHFVART 172 (200)
Q Consensus 148 irELSEEEk~~I~~SeeF~~FfeRS 172 (200)
..-|+.++-=.|+.|++|.+||.|=
T Consensus 137 ~Gll~~~DDYs~L~~~~f~~FFs~y 161 (443)
T COG3048 137 AGLLTLEDDYSILLSEEFKDFFSRY 161 (443)
T ss_pred cCcccccchHHHhhcHHHHHHHHhh
Confidence 3457888888999999999999983
Done!