Query psy17340
Match_columns 200
No_of_seqs 90 out of 101
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 19:47:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l9k_W Dynein intermediate cha 99.8 7.1E-20 2.4E-24 120.3 3.5 38 151-188 1-38 (38)
2 2pg1_I Cytoplasmic dynein 1 in 98.9 2.1E-10 7.1E-15 73.6 -0.2 32 24-55 1-33 (33)
3 3fm7_C Dynein intermediate cha 98.7 2.5E-09 8.5E-14 66.1 0.8 26 29-54 1-27 (27)
4 3glw_Z Dynein intermediate cha 98.1 7E-07 2.4E-11 55.6 0.7 23 32-54 3-26 (28)
5 2kxw_B Sodium channel protein 24.8 34 0.0011 20.5 1.5 11 170-180 6-16 (27)
6 3o65_A Putative ataxin-3-like 23.0 17 0.0006 30.2 -0.0 35 148-182 38-87 (191)
7 3lqv_P Splicing factor 3B subu 20.6 38 0.0013 22.2 1.2 20 142-161 14-33 (39)
8 2fho_A Spliceosomal protein SF 18.4 37 0.0013 22.9 0.8 19 143-161 14-32 (47)
9 2l53_B CAM, voltage-gated sodi 16.4 64 0.0022 19.9 1.5 11 170-180 6-16 (31)
10 4g26_A Pentatricopeptide repea 16.4 61 0.0021 28.6 2.0 32 149-189 283-328 (501)
No 1
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=99.78 E-value=7.1e-20 Score=120.34 Aligned_cols=38 Identities=58% Similarity=0.899 Sum_probs=37.0
Q ss_pred CCHHHHhhccCchHHHHHHHhhhHHHHHhhccCcceee
Q psy17340 151 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYK 188 (200)
Q Consensus 151 LSEEEk~~I~~SeeF~~FfeRSSRVIERALsE~yDI~~ 188 (200)
||+|||++|++|++|++||+||||||||||+|+||||+
T Consensus 1 LseEEk~~I~~S~~F~~F~~rsskviERAL~e~yDi~~ 38 (38)
T 3l9k_W 1 LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYT 38 (38)
T ss_dssp CCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred CCHHHHHHHhcCHHHHHHHHHHHHHHHHHHcccccccC
Confidence 89999999999999999999999999999999999985
No 2
>2pg1_I Cytoplasmic dynein 1 intermediate chain 2; dynein light chain, LC8, PIN, tctex1, structural protein; 2.80A {Rattus norvegicus}
Probab=98.87 E-value=2.1e-10 Score=73.61 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=25.5
Q ss_pred ccccccccccCCCCcCCCCccce-ecccccccc
Q psy17340 24 RVCPLHKSSGDVPQGLFPAQEQS-YLPKVLTYD 55 (200)
Q Consensus 24 ~r~pl~ls~~~v~~~~ippke~~-Y~k~tqT~~ 55 (200)
+|+|++|++++|+++||||||.+ |+|+|||.+
T Consensus 1 ~rk~~~L~~s~v~~~~ipPkE~v~YsK~TQT~~ 33 (33)
T 2pg1_I 1 GRGPIKLGMAKITQVDFPPREIVTYTKETQTPV 33 (33)
T ss_dssp -----CCEECCCEEEEECCCCCCEEEEEEECC-
T ss_pred CCccceeeEEEEEEeccCCcceeEEecccccCC
Confidence 57899999999999999999999 999999963
No 3
>3fm7_C Dynein intermediate chain, cytosolic; cytoplasmic dynein, light chain tctex-1, tctex, light chain intermediate chain; 3.50A {Drosophila melanogaster}
Probab=98.70 E-value=2.5e-09 Score=66.13 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=24.7
Q ss_pred cccccCCCCcCCCCccce-eccccccc
Q psy17340 29 HKSSGDVPQGLFPAQEQS-YLPKVLTY 54 (200)
Q Consensus 29 ~ls~~~v~~~~ippke~~-Y~k~tqT~ 54 (200)
+|++++|+++||||||.+ |+|+|||+
T Consensus 1 kL~~s~v~~~nipPkE~V~YsKeTQT~ 27 (27)
T 3fm7_C 1 NLSVYNVQATNIPPKETLVYTKQTQTT 27 (27)
T ss_dssp CEEECCCCCCEECCCCCCCEEEEEECC
T ss_pred CcceeEEEEeccCCcceeEEeeecccC
Confidence 689999999999999999 99999995
No 4
>3glw_Z Dynein intermediate chain; LC8, tctex, tctex-1, IC, dynein chain, entropy, allostery, chelate effect, multivalent., microtubule; 3.15A {Drosophila melanogaster}
Probab=98.07 E-value=7e-07 Score=55.62 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=21.3
Q ss_pred ccCCCCcCCCCccce-eccccccc
Q psy17340 32 SGDVPQGLFPAQEQS-YLPKVLTY 54 (200)
Q Consensus 32 ~~~v~~~~ippke~~-Y~k~tqT~ 54 (200)
+++++++||||||.+ |+|+|||.
T Consensus 3 ~~~~~~tniPPKE~v~YsKqTQT~ 26 (28)
T 3glw_Z 3 VYTKQTQTTPPKETLVYTKQTQTT 26 (28)
T ss_pred eeeeeeccCCCcceeEEEeeeeec
Confidence 468999999999999 99999996
No 5
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=24.79 E-value=34 Score=20.49 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=9.6
Q ss_pred HhhhHHHHHhh
Q psy17340 170 ARTGRVMERLL 180 (200)
Q Consensus 170 eRSSRVIERAL 180 (200)
+.|.+||+||.
T Consensus 6 e~aA~vIQrA~ 16 (27)
T 2kxw_B 6 EVSAIVIQRAY 16 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67899999996
No 6
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=23.03 E-value=17 Score=30.17 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=25.7
Q ss_pred CCCCCHHHHhh----ccCchHHHHHHHhhhH-----------HHHHhhcc
Q psy17340 148 IVELSEDEKLK----ITLSEEFQHFVARTGR-----------VMERLLAE 182 (200)
Q Consensus 148 irELSEEEk~~----I~~SeeF~~FfeRSSR-----------VIERALsE 182 (200)
.++|+++||.. =+.|.||..|+...++ ||++||..
T Consensus 38 a~~Ld~~e~~~m~e~g~~~~d~~~~~~~ps~n~~~~GnfsInVl~~AL~~ 87 (191)
T 3o65_A 38 AHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISNALKF 87 (191)
T ss_dssp HHHHHHHHHHHHGGGCTTSHHHHHHHTSCCSSBCTTCCBBHHHHHHHHHT
T ss_pred HHHcCHHHHHHHhhcCCChHHHHHHhcCCCCCcccCCCccHHHHHHHHHH
Confidence 35677777753 3678899999855554 99999964
No 7
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=20.56 E-value=38 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=15.8
Q ss_pred hccccCCCCCCHHHHhhccC
Q psy17340 142 KEETKPIVELSEDEKLKITL 161 (200)
Q Consensus 142 kE~e~~irELSEEEk~~I~~ 161 (200)
++....-|.||+||..+++-
T Consensus 14 ~ei~~RNrpltDEeLD~mLP 33 (39)
T 3lqv_P 14 REIDERNRPLSDEELDAMFP 33 (39)
T ss_dssp HHHHHTTCCCCHHHHHHTCC
T ss_pred ccchhhcCCCCHHHHHHhCC
Confidence 34555678999999999886
No 8
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=18.44 E-value=37 Score=22.93 Aligned_cols=19 Identities=21% Similarity=0.048 Sum_probs=15.2
Q ss_pred ccccCCCCCCHHHHhhccC
Q psy17340 143 EETKPIVELSEDEKLKITL 161 (200)
Q Consensus 143 E~e~~irELSEEEk~~I~~ 161 (200)
+....-|.||+||+.+|+-
T Consensus 14 ei~~rnrpltDEeLD~~LP 32 (47)
T 2fho_A 14 EIDERNRPLSDEELDAMFP 32 (47)
T ss_dssp CCCCCCCCSCTTHHHHHSC
T ss_pred ccccccCCCCHHHHHHhCC
Confidence 4444568999999999986
No 9
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=16.40 E-value=64 Score=19.92 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=9.4
Q ss_pred HhhhHHHHHhh
Q psy17340 170 ARTGRVMERLL 180 (200)
Q Consensus 170 eRSSRVIERAL 180 (200)
+.|.+||+||.
T Consensus 6 e~aA~vIQrA~ 16 (31)
T 2l53_B 6 EVSAMVIQRAF 16 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56889999996
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=16.39 E-value=61 Score=28.64 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=20.0
Q ss_pred CCCCHHHHhhccCc--------------hHHHHHHHhhhHHHHHhhccCcceeec
Q psy17340 149 VELSEDEKLKITLS--------------EEFQHFVARTGRVMERLLAEKSDMYKD 189 (200)
Q Consensus 149 rELSEEEk~~I~~S--------------eeF~~FfeRSSRVIERALsE~yDI~~D 189 (200)
-.||++|++.+..+ ..|+.|++|. -.||+++|
T Consensus 283 i~l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~---------~p~d~vID 328 (501)
T 4g26_A 283 IDINPVETETFAASLTRLACEREVKANFNQFQEWLERH---------GPFDAVID 328 (501)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTS---------CCCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhc---------CCchhhhc
Confidence 36777777654332 3566665542 36999998
Done!